BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14063
(531 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P50532|SMC4_XENLA Structural maintenance of chromosomes protein 4 OS=Xenopus laevis
GN=smc4 PE=1 SV=1
Length = 1290
Score = 215 bits (547), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 105/258 (40%), Positives = 170/258 (65%), Gaps = 2/258 (0%)
Query: 126 TRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESE 185
R + D+A+SEL+I+LS + +L + L TL ER+ +EL T++P E +
Sbjct: 489 ARSKMDVAQSELDIYLSRHNSALSQLNKAKEALNTASATLKERRAAIKELETKLPKDEGD 548
Query: 186 IAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSG 245
+ + L L EE + +QV +L ++V E R S+ +RS +++D ++Q K ++ G
Sbjct: 549 LKKREKELESLVSEEGNIKNQVRELRQKVEEARSSLSANRSRGKVLDALIQQKKSGKIPG 608
Query: 246 ILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKM 305
I GRLGDLG ID+KYD+A+S++CGAL++IV +T++ + + +K+QNVG I LDKM
Sbjct: 609 IFGRLGDLGAIDEKYDVAISSSCGALDHIVVDTIDTAQECVNFLKKQNVGVATFIGLDKM 668
Query: 306 QQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGG 365
+ + + +K +TPEN+PRL D+++V+DE+I+ AFYFA R+T+VA +L+QA R+ +
Sbjct: 669 KVW-EKGLNKIQTPENIPRLFDMVKVKDEQIKPAFYFALRDTIVANNLDQATRVAFQKDK 727
Query: 366 -YRMVTLEGAIIEPSETL 382
+R+VTL+G IIE S T+
Sbjct: 728 RWRVVTLQGQIIEQSGTM 745
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 400 YRMVTLEGAIIEPS------ETLVAQDLNQAKRIGYSGGG-YRMVTLEGAIIEPSGTMSG 452
+ MV ++ I+P+ +T+VA +L+QA R+ + +R+VTL+G IIE SGTM+G
Sbjct: 688 FDMVKVKDEQIKPAFYFALRDTIVANNLDQATRVAFQKDKRWRVVTLQGQIIEQSGTMTG 747
Query: 453 GGSNPIRGLMGRKATVSTDTSLVKDLEVKEKRLASLETELR 493
GG ++G MG V ++ +E K K + TE++
Sbjct: 748 GGGKVMKGRMGSSVMVEISDDQLQKMENKLKTDTTRATEIQ 788
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%)
Query: 9 DEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEH 68
+E+R EKL RV++VE + ALE E KA+ FL +EN +K N++ QY + K +
Sbjct: 272 NEQRGEKLNRVKMVEKEKDALEGEKNKAIEFLTVENETFKKKNQLCQYYIHDLQKRSRDK 331
Query: 69 ETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKK 106
E + ++++++ E + M+ LK VEK+
Sbjct: 332 EAQKEKIQEDTKDISEKSNTLLETMKEKNKALKDVEKQ 369
>sp|Q8CG47|SMC4_MOUSE Structural maintenance of chromosomes protein 4 OS=Mus musculus
GN=Smc4 PE=1 SV=1
Length = 1286
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/314 (38%), Positives = 192/314 (61%), Gaps = 21/314 (6%)
Query: 93 MESAKSELKTV--EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKK 150
M+S K E + + EK+ +E ++G F SV A+++ E +A+SEL+I+LS + +
Sbjct: 462 MDSLKQETQGLQKEKEIQEKELMG--FNKSVNEARSKME--VAQSELDIYLSRHNTAVSQ 517
Query: 151 LADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKL 210
L+ + L TL ERK +++ T++P + E+ E L LT+EE L V L
Sbjct: 518 LSKAKEALITASETLKERKAAIKDINTKLPQTQQELKEKEKELQKLTQEEINLKSLVHDL 577
Query: 211 AREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGA 270
++V E + S+ +RS +++D ++Q K R+ GI GRLGDLG ID+KYDIA+S+ C A
Sbjct: 578 FQKVEEAKSSLAMNRSRGKVLDAIIQEKKSGRIPGIYGRLGDLGAIDEKYDIAISSCCHA 637
Query: 271 LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQ 330
L+YIV ++++ + + +K+ N+G I LDKM + ++ K +TPEN PRL DL++
Sbjct: 638 LDYIVVDSIDTAQECVNFLKKHNIGIATFIGLDKMTVW-AKKMSKIQTPENTPRLFDLVK 696
Query: 331 VQDEKIRLAFYFATRETLVAQDLNQAKRIGYS-GGGYRMVTLEGAIIEPSETLVAQDLNQ 389
V++E+IR AFYFA R+TLVA +L+QA R+ Y +R+VTL+G IIE S T+
Sbjct: 697 VKNEEIRQAFYFALRDTLVANNLDQATRVAYQRDRRWRVVTLQGQIIEQSGTM------- 749
Query: 390 AKRIGYSGGGYRMV 403
SGGG +++
Sbjct: 750 ------SGGGSKVM 757
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 61/93 (65%), Gaps = 11/93 (11%)
Query: 414 ETLVAQDLNQAKRIGYSGGG-YRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVSTDT 472
+TLVA +L+QA R+ Y +R+VTL+G IIE SGTMSGGGS +RG MG +
Sbjct: 712 DTLVANNLDQATRVAYQRDRRWRVVTLQGQIIEQSGTMSGGGSKVMRGRMG--------S 763
Query: 473 SLVKDLEVKEKRLASLETELRILSQQKMEVETQ 505
S++ ++ V+E + +E++L S+Q M+++ Q
Sbjct: 764 SVIDEISVEE--VNKMESQLERHSKQAMQIQEQ 794
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 12/175 (6%)
Query: 9 DEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEH 68
+E R EKL RV++VE + ALE E A+ FL LEN + +K N I QY Y + E
Sbjct: 276 NEHRGEKLNRVKMVEKEKDALEGEKNIAIEFLTLENEMFKKKNHICQYYIYDLQNRIAEI 335
Query: 69 ETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSAKTRF 128
T+ +++ ++ E ++EM++ S +K VEKK + +KF + K +F
Sbjct: 336 TTQKEKIHEDTKEITEKSNVLSNEMKAKNSAVKDVEKKLNKV----TKF---IEQNKEKF 388
Query: 129 -ECDIAKSELEIFLSTQSKETKKL-ADLEANLEKVQ---TTLTERKTLCEELTTR 178
+ D+ ++ L + + KKL L+ + EKV+ + + KT+ E TTR
Sbjct: 389 TQLDLEDVQVREKLKHATSKAKKLEKQLQKDKEKVEELKSVPAKSKTVINETTTR 443
>sp|Q9ERA5|SMC4_MICAR Structural maintenance of chromosomes protein 4 (Fragment)
OS=Microtus arvalis GN=SMC4 PE=2 SV=1
Length = 1243
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/293 (40%), Positives = 183/293 (62%), Gaps = 8/293 (2%)
Query: 93 MESAKSELKTV--EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKK 150
M+S K E + + EK+ +E ++G F SV A+++ E +A+SEL+I+LS + +
Sbjct: 419 MDSLKQETQGLQKEKEDQEKELMG--FNKSVNEARSKME--VAQSELDIYLSRHNTAVSQ 474
Query: 151 LADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKL 210
L+ + L TL ERK E+ T++P + E+ E L LT+EE L V L
Sbjct: 475 LSKAKETLITASETLKERKAAIGEINTKLPQTQQELKEKEKELQKLTQEEINLKSLVHDL 534
Query: 211 AREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGA 270
++V E + S+ +RS +++D ++Q K R+ GI GRLGDLG ID+KYDIA+S+ C A
Sbjct: 535 FQKVEEAKSSLAMNRSRGKVLDAIIQEKKSGRIPGIYGRLGDLGAIDEKYDIAISSCCHA 594
Query: 271 LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQ 330
L+YIV ++++ + + +KR N+G I LDKM + ++ K +TPEN PRL DL++
Sbjct: 595 LDYIVVDSIDTAQECVNFLKRHNIGVATFIGLDKMTVW-AKKMAKIQTPENTPRLFDLVK 653
Query: 331 VQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGG-GYRMVTLEGAIIEPSETL 382
++E+IR AFYFA R+TLVA +L+QA R+ Y +R+VTL+G IIE S T+
Sbjct: 654 AKNEEIRQAFYFALRDTLVADNLDQATRVAYQKDRRWRVVTLQGQIIEQSGTM 706
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 9 DEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEH 68
+E R EKL RV++VE + A+E E A+ FL LE + +K N + QY Y K + E
Sbjct: 233 NENRGEKLNRVKMVEKEKDAVEGEKNIAIEFLTLEKEMFKKKNHVCQYYIYDLQKRIDEM 292
Query: 69 ETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKK 106
+T+ +++ ++ E ++EM++ S +K +EKK
Sbjct: 293 KTQKEKIHEDTKEITEKSNMLSNEMKAKNSAVKDIEKK 330
>sp|Q9NTJ3|SMC4_HUMAN Structural maintenance of chromosomes protein 4 OS=Homo sapiens
GN=SMC4 PE=1 SV=2
Length = 1288
Score = 203 bits (516), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 119/293 (40%), Positives = 181/293 (61%), Gaps = 8/293 (2%)
Query: 93 MESAKSELKTV--EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKK 150
M+S K E + + EK+ +E ++G F SV A+++ D+A+SEL+I+LS + +
Sbjct: 464 MDSLKQETQGLQKEKESREKELMG--FSKSVNEARSKM--DVAQSELDIYLSRHNTAVSQ 519
Query: 151 LADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKL 210
L + L TL ERK ++ ++P E E+ E L LT+EE V L
Sbjct: 520 LTKAKEALIAASETLKERKAAIRDIEGKLPQTEQELKEKEKELQKLTQEETNFKSLVHDL 579
Query: 211 AREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGA 270
++V E + S+ +RS +++D ++Q K R+ GI GRLGDLG ID+KYD+A+S+ C A
Sbjct: 580 FQKVEEAKSSLAMNRSRGKVLDAIIQEKKSGRIPGIYGRLGDLGAIDEKYDVAISSCCHA 639
Query: 271 LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQ 330
L+YIV ++++ + + +KRQN+G I LDKM + + + +TPEN PRL DL++
Sbjct: 640 LDYIVVDSIDIAQECVNFLKRQNIGVATFIGLDKMAVWAKKMTE-IQTPENTPRLFDLVK 698
Query: 331 VQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGG-GYRMVTLEGAIIEPSETL 382
V+DEKIR AFYFA R+TLVA +L+QA R+ Y +R+VTL+G IIE S T+
Sbjct: 699 VKDEKIRQAFYFALRDTLVADNLDQATRVAYQKDRRWRVVTLQGQIIEQSGTM 751
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 62/93 (66%), Gaps = 11/93 (11%)
Query: 414 ETLVAQDLNQAKRIGYSGGG-YRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVSTDT 472
+TLVA +L+QA R+ Y +R+VTL+G IIE SGTM+GGGS ++G MG +
Sbjct: 714 DTLVADNLDQATRVAYQKDRRWRVVTLQGQIIEQSGTMTGGGSKVMKGRMG--------S 765
Query: 473 SLVKDLEVKEKRLASLETELRILSQQKMEVETQ 505
SLV +E+ E+ + +E++L+ S++ M+++ Q
Sbjct: 766 SLV--IEISEEEVNKMESQLQNDSKKAMQIQEQ 796
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 56/98 (57%)
Query: 9 DEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEH 68
+E R EKL RV++VE + ALE E A+ FL LEN + RK N + QY Y K + E
Sbjct: 278 NEHRGEKLNRVKMVEKEKDALEGEKNIAIEFLTLENEIFRKKNHVCQYYIYELQKRIAEM 337
Query: 69 ETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKK 106
ET+ +++ ++ E ++EM++ ++K EKK
Sbjct: 338 ETQKEKIHEDTKEINEKSNILSNEMKAKNKDVKDTEKK 375
>sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4 OS=Arabidopsis
thaliana GN=SMC4 PE=2 SV=1
Length = 1241
Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 151/259 (58%), Gaps = 4/259 (1%)
Query: 127 RFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEI 186
R + D+A SE E+ K D + L + T E+ + + E
Sbjct: 438 RGKLDVASSESELLSKKHEAALKAFTDAQKQLSDISTRKKEKAAATTSWKADIKKKKQEA 497
Query: 187 AESRARLADLTREEAKLLDQVEKLARE-VSEKRESMQTSRSNNRLIDFVMQLKSENRVSG 245
E+R + +E+ L+ Q E+ ARE V+E + +M + +S N ++ V++ K N++ G
Sbjct: 498 IEARKVEEESLKEQETLVPQ-EQAAREKVAELKSAMNSEKSQNEVLKAVLRAKENNQIEG 556
Query: 246 ILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKM 305
I GR+GDLG ID KYD+A+STAC L+YIV ET + +A + +++ N+G + L+K
Sbjct: 557 IYGRMGDLGAIDAKYDVAISTACAGLDYIVVETTSSAQACVELLRKGNLGFATFMILEKQ 616
Query: 306 QQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGG- 364
+ + +K +TPE+VPRL DL++V+DE+++LAFY A T+VA+DL+QA RI Y G
Sbjct: 617 TDHIHKLKEKVKTPEDVPRLFDLVRVKDERMKLAFYAALGNTVVAKDLDQATRIAYGGNR 676
Query: 365 -GYRMVTLEGAIIEPSETL 382
R+V L+GA+ E S T+
Sbjct: 677 EFRRVVALDGALFEKSGTM 695
>sp|Q54LV0|SMC4_DICDI Structural maintenance of chromosomes protein 4 OS=Dictyostelium
discoideum GN=smc4 PE=3 SV=1
Length = 1415
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 153/285 (53%), Gaps = 16/285 (5%)
Query: 119 WSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTR 178
WS ++ + D+ SEL + + T+ L D LE +T + RK +
Sbjct: 570 WSKKHSEAKAVVDLKTSELAVLSKDFNGATQNLDDAIKALEDAKTISSTRKNNITKSKKE 629
Query: 179 VPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLK 238
+ ++++ I + RLA E L R++ + + ++ + S N ++D ++++K
Sbjct: 630 LESVKAIIVDLEKRLASGKVTEENLYRNTMDAKRQLEQIKTNLSENSSRNTILDRLLKIK 689
Query: 239 SENRVSGILGRLGDLGGIDQKYDIAVSTAC-GALNYIVTETVEAGEAVIAAVKRQNVGRV 297
++SGI GRLGDLG IDQKYD+A+STA ++ I+ ET A EA + ++++N+GR
Sbjct: 690 ESGQISGIHGRLGDLGAIDQKYDVAISTAAFSQMDNIIVETTAAAEACVELLRKENLGRA 749
Query: 298 NVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDE-KIRLAFYFATRETLVAQDLNQA 356
+ L+ + +Y Q +TP N PRL DLI+++DE K AF+ A TLVA L++A
Sbjct: 750 TFMILENL-EYQRQNLGPVQTPNNTPRLFDLIKMKDEKKYATAFFTAVGHTLVADTLDEA 808
Query: 357 KRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYR 401
+I Y +R+VTL+G++I+ S + SGGG +
Sbjct: 809 TKIAYGAKRHRVVTLDGSLIDTSGAM-------------SGGGLK 840
>sp|P41004|SMC4_SCHPO Structural maintenance of chromosomes protein 4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cut3 PE=1 SV=2
Length = 1324
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 114/187 (60%), Gaps = 16/187 (8%)
Query: 216 EKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIV 275
E + S+ +SRS +++ + +L + ++G GRLGDL ID+ YD+A+STAC ALN+IV
Sbjct: 623 EMKASLSSSRSRGNVLESLQRLHESDNLNGFFGRLGDLATIDEAYDVAISTACPALNHIV 682
Query: 276 TETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEK 335
+ +E G+ +A ++ N+GR + I L ++ Q + + +TPENVPRL DL++ D+K
Sbjct: 683 VDNIETGQKCVAFLRSNNLGRASFIILKELAQKN---LARIQTPENVPRLFDLLRFNDQK 739
Query: 336 IRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGY 395
AFY + TLVA++L QA RI Y +R+VTL G +I+ S T+
Sbjct: 740 FAPAFYNVLQNTLVAKNLEQANRIAYGKTRWRVVTLSGQLIDKSGTM------------- 786
Query: 396 SGGGYRM 402
+GGG R+
Sbjct: 787 TGGGTRV 793
Score = 59.3 bits (142), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 10/118 (8%)
Query: 415 TLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVSTDTSL 474
TLVA++L QA RI Y +R+VTL G +I+ SGTM+GGG+ +G G + +++D S
Sbjct: 751 TLVAKNLEQANRIAYGKTRWRVVTLSGQLIDKSGTMTGGGTRVKKG--GMSSAITSDVSP 808
Query: 475 V------KDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTCLID 526
K +++++ R +EL L+Q+ E+ ++ EL+ K + D D
Sbjct: 809 ASVETCDKQVQLEDTRYRQHLSELESLNQRFTEISERIPSA--ELEISKLQLDVSACD 864
>sp|Q12267|SMC4_YEAST Structural maintenance of chromosomes protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC4 PE=1
SV=1
Length = 1418
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 180/348 (51%), Gaps = 31/348 (8%)
Query: 64 NLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEK--KGKESNVIGSKFR--- 118
++ E E ++++ + T + IK T +E +S L ++ K K N+ R
Sbjct: 497 SISEAENMLEELRGQQTEHETEIKDLTQLLEKERSILDDIKLSLKDKTKNISAEIIRHEK 556
Query: 119 ----WSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEE 174
W + + + +A+SEL + TQ+K K + LE + +T E + L +
Sbjct: 557 ELEPWDLQLQEKESQIQLAESELSLLEETQAKLKKNVETLEEKILAKKTHKQELQDLILD 616
Query: 175 LTTRVPAMESEIAESRARLADLT---REEAKLLDQVEKLAREVSEKRESMQTSRSNNRLI 231
L ++ +++ E ++ +E K+L+ + A E R S+ +++ ++++
Sbjct: 617 LKKKLNSLKDERSQGEKNFTSAHLKLKEMQKVLNAHRQRAMEA---RSSLSKAQNKSKVL 673
Query: 232 DFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKR 291
+ +L+ R++G GRLGDLG ID +D+A+STAC L+ +V +TVE + I +++
Sbjct: 674 TALSRLQKSGRINGFHGRLGDLGVIDDSFDVAISTACPRLDDVVVDTVECAQHCIDYLRK 733
Query: 292 QNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQ 351
+G I LD+++Q++ Q TPENVPRL DL++ ++ K AFY R+TLVAQ
Sbjct: 734 NKLGYARFILLDRLRQFNLQPIS---TPENVPRLFDLVKPKNPKFSNAFYSVLRDTLVAQ 790
Query: 352 DLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGG 399
+L QA + Y +R+VT++G +I+ S T+ SGGG
Sbjct: 791 NLKQANNVAYGKKRFRVVTVDGKLIDISGTM-------------SGGG 825
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 11/123 (8%)
Query: 386 DLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIE 445
DL + K +S Y ++ +TLVAQ+L QA + Y +R+VT++G +I+
Sbjct: 766 DLVKPKNPKFSNAFYSVL---------RDTLVAQNLKQANNVAYGKKRFRVVTVDGKLID 816
Query: 446 PSGTMSGGGSNPIRGLM--GRKATVSTDTSLVKDLEVKEKRLASLETELRILSQQKMEVE 503
SGTMSGGG++ +GLM G + D ++++ E+ L+ E R+ S E+E
Sbjct: 817 ISGTMSGGGNHVAKGLMKLGTNQSDKVDDYTPEEVDKIERELSERENNFRVASDTVHEME 876
Query: 504 TQL 506
+L
Sbjct: 877 EEL 879
>sp|Q20060|SMC4_CAEEL Structural maintenance of chromosomes protein 4 OS=Caenorhabditis
elegans GN=smc-4 PE=1 SV=1
Length = 1549
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 103/351 (29%), Positives = 160/351 (45%), Gaps = 46/351 (13%)
Query: 73 QQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSA---KTRFE 129
Q +E E TAN E+ K DE E K +KK +E+ W+ S K R E
Sbjct: 454 QLLEIEKTANEEADKNL-DEFEKRSEAPKEEQKKIQET--------WAQKSNEFNKVRGE 504
Query: 130 CDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAES 189
IA+ + E + T KL +L+ LE + + + K +EL P +S
Sbjct: 505 ARIAREDFEDLKKLANSGTDKLIELKKRLESSEESYAKEK---DELDKLKPEFDS----W 557
Query: 190 RARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNN-------RLIDFVMQLKSENR 242
+L L+ E L + + +++++ R+ ++T R N ++I +M+ K R
Sbjct: 558 NDKLKQLSTELPTLRNTARQKNQDLAKTRDRLETLRQQNSSCSSSNKVIQALMKEKEAGR 617
Query: 243 VSGILGRLGDLGGIDQKYDIAVSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIP 301
+ GRLGDLG ID KY+ A+ T GA LNY++ E + VI + + R V P
Sbjct: 618 IKSFHGRLGDLGVIDPKYEGAICTNFGARLNYLIVGKEEDAKNVINFLVANKLPRQTVQP 677
Query: 302 LDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGY 361
LDK++ P PRLIDLI D ++ AFY R +V +A+R+
Sbjct: 678 LDKIKCDKRDLAPNPTNPLPAPRLIDLIDC-DPVLKPAFYDMVRSAIVGDSTQEAQRMHR 736
Query: 362 SGG--GYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAII 410
G + TLEG++I PS + ++GGG T++G I+
Sbjct: 737 MPACRGVTVCTLEGSMIHPSGS-------------FTGGGK---TVKGLIL 771
>sp|Q9HK21|SMC_THEAC Chromosome partition protein Smc OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=smc PE=3 SV=1
Length = 1140
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 143/289 (49%), Gaps = 28/289 (9%)
Query: 152 ADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLA-------DLTREEAKLL 204
ADL L+K + L ERK E+L ++ E + E+ + DL + ++
Sbjct: 408 ADLAVLLQK-KAALEERK---EDLDLKIRTSEWKAKETSEDMGKYSRKYYDLKAKYDQIN 463
Query: 205 DQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKS-ENRVSGILGRLGDLGGIDQKYDIA 263
D++ L E+SEK S + + S R+ ++V +K E V G++G + DL +KY A
Sbjct: 464 DRISDLKSEISEKEASAKIASS--RVPEYVRNVKMLEESVEGVIGLVRDLISYGEKYVKA 521
Query: 264 VSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQ--CYDKYRTPE 320
V +A G LN +V + + I +K + + + +PL+KM+ +Q + P
Sbjct: 522 VESAGGGRLNAVVVKDDAVAKECIQILKDRKISPMTFLPLNKMRDPPAQRDVGKISKDPG 581
Query: 321 NVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSE 380
+ L+D + +D+ R A Y+A R+T++ QD++ +R+ G +R+VTL+G I +P
Sbjct: 582 YLGILMDFVDFEDQ-YRSAVYYAIRDTILVQDIDAGRRL---MGIFRLVTLDGDIFDPGG 637
Query: 381 TLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETL-----VAQDLNQA 424
++ N A Y+ LEG I+ S + + ++++QA
Sbjct: 638 SITGGYRNYAS--DYASALRMQHDLEGMKIQLSSLMDDRSRIKREMDQA 684
Score = 40.0 bits (92), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 30/43 (69%), Gaps = 3/43 (6%)
Query: 414 ETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSN 456
+T++ QD++ +R+ G +R+VTL+G I +P G+++GG N
Sbjct: 606 DTILVQDIDAGRRLM---GIFRLVTLDGDIFDPGGSITGGYRN 645
>sp|Q59037|SMC_METJA Chromosome partition protein Smc OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=smc PE=3 SV=2
Length = 1169
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 5/143 (3%)
Query: 243 VSGILGRLGDLGGIDQKYDIAVSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIP 301
+ GI+ +G+LG +Y A+ A G LN+IV + ++ I +K + +GR +P
Sbjct: 522 LPGIIDIVGNLGKTKIEYKTAIEVAAGNRLNHIVVKRMDDAVRAIKYLKERKLGRATFLP 581
Query: 302 LDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGY 361
LD+++ + D+ + R IDL++ DEK R F + T+V ++++ AK +
Sbjct: 582 LDRIEGREAYYIDEDGV---IGRAIDLVEF-DEKYRRVFEYVFGNTVVVENIDIAKELAK 637
Query: 362 SGGGYRMVTLEGAIIEPSETLVA 384
R VTL+G +IEPS ++
Sbjct: 638 KYRKVRFVTLDGDVIEPSGAMIG 660
>sp|P48996|DPY27_CAEEL Chromosome condensation protein dpy-27 OS=Caenorhabditis elegans
GN=dpy-27 PE=1 SV=1
Length = 1469
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 116/265 (43%), Gaps = 6/265 (2%)
Query: 123 SAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAM 182
S + + E D+++SEL+ + K++ +L+ L+ + T +TT +
Sbjct: 501 SMRAKAELDVSESELKDMTIMMEQGQKRVDELKGTLQTMMAENIRDNTELNAVTTELQDR 560
Query: 183 ESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENR 242
+ + ++ +L L E L + +L +EV E + + + + + +LK
Sbjct: 561 KLKFDKAVEKLPHLKSTEQLLRSKKYELDQEVIEASNTQEVTYRHQATAK-LHELKEAGL 619
Query: 243 VSGILGRLGDLGGIDQKYDIAVSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIP 301
G GRLGDL I K+D A+ST A L+Y V +T + I + R +
Sbjct: 620 FPGFKGRLGDLASIPIKFDTAISTVFFAQLDYHVVQTSDECRIGIGFCHEYKLPRTTFVF 679
Query: 302 LDKMQQYHSQCYDK-YRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIG 360
LD ++ + D + P RL D I + +IR FYF + LV L +A RI
Sbjct: 680 LDHLKDTDTSGMDSTMKFP--AERLFDKIHCVNPEIRREFYFLIHDILVVDSLEEATRID 737
Query: 361 YS-GGGYRMVTLEGAIIEPSETLVA 384
G +R TL G+I+ S L
Sbjct: 738 KKYPGRHRYCTLNGSILNRSGALTG 762
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 16/129 (12%)
Query: 414 ETLVAQDLNQAKRIGYS-GGGYRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVSTDT 472
+ LV L +A RI G +R TL G+I+ SG ++GGG P G + + + +
Sbjct: 723 DILVVDSLEEATRIDKKYPGRHRYCTLNGSILNRSGALTGGGK-PTTGRI--RNDNNPNM 779
Query: 473 SLVKDLEV------KEKRLASLETELRI-LSQQKMEVET-----QLNCTGNELKYKKQEY 520
S VK +++ +EK +LE L++ L Q+++ + QL EL +E
Sbjct: 780 SGVKKVDLSKLRAAQEKHNHALEAHLKLQLKQEEIRADNGPIIKQLEIRKRELIMSTKEQ 839
Query: 521 DTCLIDVKS 529
T + ++KS
Sbjct: 840 KTRIAELKS 848
>sp|Q5N0D2|SMC_SYNP6 Chromosome partition protein Smc OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=smc PE=3 SV=2
Length = 1195
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 100/194 (51%), Gaps = 18/194 (9%)
Query: 188 ESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGIL 247
E+R RL R++ + LD+ E L R++MQ ++ +L + + G+
Sbjct: 498 ETRDRLLKEQRDKQRQLDRQESL-------RQAMQETQGTA-----AARLILDTGLPGVH 545
Query: 248 GRLGDLGGIDQKYDIAVSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQ 306
G + LG ++ +Y +A+ A G L Y+V + A I +K++ GR+ +PL++++
Sbjct: 546 GLVAQLGRVEPRYQLALEVAAGGRLGYLVVDDDGVASAGIELLKQKKAGRITFLPLNRIR 605
Query: 307 QYHSQCYDKYRTPENVPRL-IDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGG 365
+++ PE + L I L+ D++ R F F T+V + L+QA+R G
Sbjct: 606 AGKQPEIPRWQQPEGLVDLAIALVDC-DDRYREVFKFVLGGTVVFERLDQARRY---MGQ 661
Query: 366 YRMVTLEGAIIEPS 379
YR+VTL+G ++E S
Sbjct: 662 YRIVTLDGELLETS 675
>sp|Q24U48|SMC_DESHY Chromosome partition protein Smc OS=Desulfitobacterium hafniense
(strain Y51) GN=smc PE=3 SV=1
Length = 1198
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 6/159 (3%)
Query: 234 VMQLKSENRVS--GILGRLGDLGGIDQKYDIAVSTACGA-LNYIVTETVEAGEAVIAAVK 290
+M K +N+ S + G L DL ++++Y++AV A GA + IVTET + + +K
Sbjct: 519 LMLAKKKNQPSCGDLCGTLADLLQVEERYEVAVEVALGAGIQNIVTETERGAKEAVHYLK 578
Query: 291 RQNVGRVNVIPLDKMQQYHSQ-CYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLV 349
N+GR +PLD +Q + + + P + +DLI EK R AF TL+
Sbjct: 579 SHNLGRATFLPLDVIQGGKATVAKEAAQDPGFIGVAVDLITFA-EKYRKAFESQLGRTLI 637
Query: 350 AQDLNQAKRIG-YSGGGYRMVTLEGAIIEPSETLVAQDL 387
D+ A R+ SG R+VTLEG + P +L L
Sbjct: 638 VTDMEAATRVARASGYRARIVTLEGDQVHPGGSLTGGSL 676
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 10/56 (17%)
Query: 415 TLVAQDLNQAKRIGYSGG-GYRMVTLEGAIIEPSGTMSGG-----GSNPIRGLMGR 464
TL+ D+ A R+ + G R+VTLEG + P G+++GG GSN L+GR
Sbjct: 635 TLIVTDMEAATRVARASGYRARIVTLEGDQVHPGGSLTGGSLQRKGSN----LLGR 686
>sp|O66878|SMC_AQUAE Chromosome partition protein Smc OS=Aquifex aeolicus (strain VF5)
GN=smc PE=3 SV=1
Length = 1156
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Query: 243 VSGILGRLGDLGGIDQKYDI-AVSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVI 300
+ G+ G + +L + I A+ A G L +IV E E + I KR N+GR + I
Sbjct: 508 IKGVYGSVSELIRVKNPEHITAIEVAGGGRLKFIVVEDEEVAKECIQLAKRMNLGRFSFI 567
Query: 301 PLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIG 360
PL+++ + + RT V ++L++ D K F +TL+ ++ AK IG
Sbjct: 568 PLNRV-RVEERPLRYPRTKGAVDFAVNLVEY-DPKFEKVVKFVFGDTLIVENFESAKAIG 625
Query: 361 YSGGGYRMVTLEGAIIEPS 379
G YRMVTLEG + E S
Sbjct: 626 I--GNYRMVTLEGELFEKS 642
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 414 ETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNP 457
+TL+ ++ AK IG G YRMVTLEG + E SG ++GG P
Sbjct: 611 DTLIVENFESAKAIGI--GNYRMVTLEGELFEKSGVITGGAVKP 652
>sp|Q69GZ5|SMC_METVO Chromosome partition protein Smc OS=Methanococcus voltae GN=smc
PE=3 SV=1
Length = 1199
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 33/240 (13%)
Query: 149 KKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVE 208
K+L D+ LE + L E+ T + +++ + SE + AR+ L E LD
Sbjct: 478 KELEDIAVELEFSKKKLQEKITERNDSQSKLDNLHSEYVKENARIKTLKDMENFSLD--- 534
Query: 209 KLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTAC 268
R + V+ K + G++ G+L +Y A+ A
Sbjct: 535 --------------------RAVKGVLDAK----LPGVVDIAGNLAKTKGEYKTAIEVAG 570
Query: 269 GA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLID 327
GA LN+IV + ++ G I +K++ +GR +P+D+++ ++ + + ID
Sbjct: 571 GARLNHIVVKKMDDGSRAINYLKQKRLGRATFLPMDRIKGMDAKDISDTGI---IGKAID 627
Query: 328 LIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDL 387
L++ D K F F T + +L AK++ R VTLEG +IEPS +V ++
Sbjct: 628 LVEF-DIKYTNVFKFIFGNTHIVDNLENAKKLSLKYKA-RFVTLEGEVIEPSGAMVGGNI 685
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 21/114 (18%)
Query: 415 TLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVSTDTSL 474
T + +L AK++ R VTLEG +IEPSG M GG IR R + + D +
Sbjct: 646 THIVDNLENAKKLSLKYKA-RFVTLEGEVIEPSGAMVGGN---IR----RNSAIKVDIDM 697
Query: 475 VKDLEVKEKRLASLETELR----ILSQQKMEVETQLNCTGNELKYKKQEYDTCL 524
K+L +L +++ ILS K E+E +LN N +K E D L
Sbjct: 698 --------KKLTNLSEDIKELEQILSNVKDEIE-RLNNKINTCSTRKLELDNRL 742
>sp|Q7NG51|SMC_GLOVI Chromosome partition protein Smc OS=Gloeobacter violaceus (strain
PCC 7421) GN=smc PE=3 SV=1
Length = 1165
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 91/362 (25%), Positives = 161/362 (44%), Gaps = 46/362 (12%)
Query: 70 TKVQQMEQEL----TANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSAK 125
++ QQ +Q L TA LES ++ +E+++++L+ + S RW ++
Sbjct: 340 SRRQQDQQALVAQWTARLESDRQV---LETSRNDLEQLS---------ASSRRWVEEQSQ 387
Query: 126 TRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESE 185
R D +SE + T + +L E+ + L + +L T +
Sbjct: 388 LRRRLDQLQSEHDPLQRTLDRLGDRLVQATGEGERHREELARIEAGHAQLATEAKVAQER 447
Query: 186 IAESRARL----ADLTREEAKLL-DQV--EKLAREVSEKR---ESMQTSRSNNRLID--F 233
+A +R RL ADL E A++L D+ +L +E +EK + ++T R R +
Sbjct: 448 LAAARTRLEQTRADLEAERAQILADRTTQRRLEKERTEKARELDRLETQRQVWREAEGSR 507
Query: 234 VMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQ 292
Q + + G+ G + LG ++ +Y A+ A G LN +V E I +K +
Sbjct: 508 ATQEVLGSGIQGVHGLISQLGRVEAQYQGALEVAAGNRLNNVVVEDDAVAAQAIELLKSR 567
Query: 293 NVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQD 352
GR +PL+K++ + ++ + +DLI+ D + AF +T+V +
Sbjct: 568 RAGRATFLPLNKLRS--GRYLERLHEEGAIGYALDLIEF-DRRYEAAFVQVFGDTVVFRS 624
Query: 353 LNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEP 412
L A+R G YRMVT+ G ++E S + L+ A+R G G+ A+ EP
Sbjct: 625 LELARR---QLGRYRMVTMAGELLEKSGAMTGGSLD-ARR---GGSGF-------ALSEP 670
Query: 413 SE 414
E
Sbjct: 671 PE 672
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 414 ETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRGLMG 463
+T+V + L A+R G YRMVT+ G ++E SG M+GG + RG G
Sbjct: 618 DTVVFRSLELARR---QLGRYRMVTMAGELLEKSGAMTGGSLDARRGGSG 664
>sp|P51834|SMC_BACSU Chromosome partition protein Smc OS=Bacillus subtilis (strain 168)
GN=smc PE=1 SV=3
Length = 1186
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 116/271 (42%), Gaps = 36/271 (13%)
Query: 134 KSELEIFLSTQSKETKKLADLEANLEKV---QTTLTERKTLCEELTTRVPAMESEIAESR 190
++EL++ S+ L L N EK + ++ RK CE T +E EI
Sbjct: 396 RNELQLLDDQMSQSAVTLQRLADNNEKHLQERHDISARKAACE---TEFARIEQEIHSQV 452
Query: 191 ARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQ-------------L 237
D+ + + Q EK + + + +Q +RS +++ MQ L
Sbjct: 453 GAYRDMQTKYEQKKRQYEKNESALYQAYQYVQQARSKKDMLE-TMQGDFSGFYQGVKEVL 511
Query: 238 KSENRVSGILGRLGDLGGIDQKYDIAVSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGR 296
K++ R+ GI G + +L +QKY+ A+ A GA ++VT+ ++ I +K+ + GR
Sbjct: 512 KAKERLGGIRGAVLELISTEQKYETAIEIALGASAQHVVTDDEQSARKAIQYLKQNSFGR 571
Query: 297 VNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRE--------TL 348
+PL ++ Q R E R + V E + F A R L
Sbjct: 572 ATFLPLSVIRDRQLQS----RDAETAARHSSFLGVASELV--TFDPAYRSVIQNLLGTVL 625
Query: 349 VAQDLNQAKRIG-YSGGGYRMVTLEGAIIEP 378
+ +DL A + G YR+VTLEG ++ P
Sbjct: 626 ITEDLKGANELAKLLGHRYRIVTLEGDVVNP 656
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 390 AKRIGYSGGGYRMVTLEGA---IIEP--SETLVAQDLNQAKRIG-YSGGGYRMVTLEGAI 443
A+ + G +VT + A +I+ L+ +DL A + G YR+VTLEG +
Sbjct: 594 ARHSSFLGVASELVTFDPAYRSVIQNLLGTVLITEDLKGANELAKLLGHRYRIVTLEGDV 653
Query: 444 IEPSGTMSGGG-SNPIRGLMGRKATVSTDTSLVKDLEVKEKRLASLETELRILSQQKMEV 502
+ P G+M+GG L+GR + + K L E++ A LE E++ L ++
Sbjct: 654 VNPGGSMTGGAVKKKNNSLLGRSRELE---DVTKRLAEMEEKTALLEQEVKTLKHSIQDM 710
Query: 503 ETQ---LNCTGNELKYKKQE 519
E + L TG L+ K+Q+
Sbjct: 711 EKKLADLRETGEGLRLKQQD 730
>sp|Q7ZAK1|SMC_THEEB Chromosome partition protein Smc OS=Thermosynechococcus elongatus
(strain BP-1) GN=smc PE=3 SV=1
Length = 1168
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 27/201 (13%)
Query: 184 SEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRV 243
S E+ RL R++ + LDQ+E +++++Q ++ F +L +
Sbjct: 473 SRTEETYQRLEREQRQKQRELDQLEA-------RQQAVQETQGG-----FAARLILSADL 520
Query: 244 SGILGRLGDLGGIDQKYDIAVSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPL 302
G+LG + LG ++ +Y +A+ A GA L IV A IA +KR+ GR +PL
Sbjct: 521 PGVLGLVAQLGQVEPRYQLALEIAAGARLGNIVVADDSVAAAAIALLKREQAGRATFLPL 580
Query: 303 DKMQQYHSQCYDKYRTPENVPRLID----LIQVQDEKIRLAFYFATRETLVAQDLNQAKR 358
+KM K +P + ID L+ + + + F + TLV + L A+
Sbjct: 581 NKM------ARPKPLSPIALAGCIDYALNLVTFEPQYAPI-FAYVFGSTLVFESLEAARE 633
Query: 359 IGYSGGGYRMVTLEGAIIEPS 379
G YRMVTLEG ++EPS
Sbjct: 634 YL---GQYRMVTLEGELLEPS 651
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 432 GGYRMVTLEGAIIEPSGTMSGGG---SNPIRGLMGRKATVSTDTSLVKD 477
G YRMVTLEG ++EPSG M+GG N +R G S + V+D
Sbjct: 636 GQYRMVTLEGELLEPSGAMTGGSQRRPNTLRFAQGVPPQESAEVQQVRD 684
>sp|O42649|SMC3_SCHPO Structural maintenance of chromosomes protein 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=psm3 PE=1 SV=1
Length = 1194
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 90/176 (51%), Gaps = 27/176 (15%)
Query: 134 KSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARL 193
K E+EI L +Q +++ L AN+ T++ ERK E LT + +
Sbjct: 434 KKEIEISLESQGD---RMSQLLANI----TSINERK---ENLTDKRKS------------ 471
Query: 194 ADLTREEAKLLDQVEKLAREVSEKRESMQTS--RSNNRLIDFVMQLKSENRVSGILGRLG 251
L REEAKL +E + ++S +++ T+ R+ + I V + ++ G G L
Sbjct: 472 --LWREEAKLKSSIENVKDDLSRSEKALGTTMDRNTSNGIRAVKDIAERLKLEGYYGPLC 529
Query: 252 DLGGIDQKYDIAV-STACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQ 306
+L +D ++ +AV +TA +L +IV + E ++ + ++N GRV +PL+K++
Sbjct: 530 ELFKVDNRFKVAVEATAGNSLFHIVVDNDETATQILDVIYKENAGRVTFMPLNKLR 585
>sp|Q9Z1M9|SMC1A_RAT Structural maintenance of chromosomes protein 1A OS=Rattus
norvegicus GN=Smc1a PE=1 SV=1
Length = 1233
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 121/246 (49%), Gaps = 18/246 (7%)
Query: 141 LSTQSKETKKLADLEAN---LEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLT 197
+ T++K +KL ++E N +EK++ +T K EE + E+ ++ R+ ++
Sbjct: 415 VETEAKIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRIDEIN 474
Query: 198 REEAKLLDQV-EKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGI 256
+E L+QV E+L +++ES + R +++ + +L + GRL DL
Sbjct: 475 KE----LNQVMEQLGDARIDRQESSRQQRKAE-IMESIKRLYP----GSVYGRLIDLCQP 525
Query: 257 DQK-YDIAVSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYD 314
QK Y IAV+ G ++ I+ ++ + G I +K Q +PLD ++ + +
Sbjct: 526 TQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTD--E 583
Query: 315 KYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGG-YRMVTLEG 373
K R + +ID+I+ + I+ A +A LV ++ A+RI + G ++ V L+G
Sbjct: 584 KLRELKGAKLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTVALDG 643
Query: 374 AIIEPS 379
+ + S
Sbjct: 644 TLFQKS 649
Score = 36.2 bits (82), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 415 TLVAQDLNQAKRIGYSGGG-YRMVTLEGAIIEPSGTMSGGGSN 456
LV ++ A+RI + G ++ V L+G + + SG +SGG S+
Sbjct: 616 ALVCDNVEDARRIAFGGHQRHKTVALDGTLFQKSGVISGGASD 658
>sp|Q9CU62|SMC1A_MOUSE Structural maintenance of chromosomes protein 1A OS=Mus musculus
GN=Smc1a PE=1 SV=4
Length = 1233
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 121/246 (49%), Gaps = 18/246 (7%)
Query: 141 LSTQSKETKKLADLEAN---LEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLT 197
+ T++K +KL ++E N +EK++ +T K EE + E+ ++ R+ ++
Sbjct: 415 VETEAKIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRIDEIN 474
Query: 198 REEAKLLDQV-EKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGI 256
+E L+QV E+L +++ES + R +++ + +L + GRL DL
Sbjct: 475 KE----LNQVMEQLGDARIDRQESSRQQRKAE-IMESIKRLYP----GSVYGRLIDLCQP 525
Query: 257 DQK-YDIAVSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYD 314
QK Y IAV+ G ++ I+ ++ + G I +K Q +PLD ++ + +
Sbjct: 526 TQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTD--E 583
Query: 315 KYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGG-YRMVTLEG 373
K R + +ID+I+ + I+ A +A LV ++ A+RI + G ++ V L+G
Sbjct: 584 KLRELKGAKLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTVALDG 643
Query: 374 AIIEPS 379
+ + S
Sbjct: 644 TLFQKS 649
Score = 36.2 bits (82), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 415 TLVAQDLNQAKRIGYSGGG-YRMVTLEGAIIEPSGTMSGGGSN 456
LV ++ A+RI + G ++ V L+G + + SG +SGG S+
Sbjct: 616 ALVCDNVEDARRIAFGGHQRHKTVALDGTLFQKSGVISGGASD 658
>sp|Q14683|SMC1A_HUMAN Structural maintenance of chromosomes protein 1A OS=Homo sapiens
GN=SMC1A PE=1 SV=2
Length = 1233
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 121/246 (49%), Gaps = 18/246 (7%)
Query: 141 LSTQSKETKKLADLEAN---LEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLT 197
+ T++K +KL ++E N +EK++ +T K EE + E+ ++ R+ ++
Sbjct: 415 VETEAKIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRIDEIN 474
Query: 198 REEAKLLDQV-EKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGI 256
+E L+QV E+L +++ES + R +++ + +L + GRL DL
Sbjct: 475 KE----LNQVMEQLGDARIDRQESSRQQRKAE-IMESIKRLYP----GSVYGRLIDLCQP 525
Query: 257 DQK-YDIAVSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYD 314
QK Y IAV+ G ++ I+ ++ + G I +K Q +PLD ++ + +
Sbjct: 526 TQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTD--E 583
Query: 315 KYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGG-YRMVTLEG 373
K R + +ID+I+ + I+ A +A LV ++ A+RI + G ++ V L+G
Sbjct: 584 KLRELKGAKLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTVALDG 643
Query: 374 AIIEPS 379
+ + S
Sbjct: 644 TLFQKS 649
Score = 36.6 bits (83), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 415 TLVAQDLNQAKRIGYSGGG-YRMVTLEGAIIEPSGTMSGGGSN 456
LV ++ A+RI + G ++ V L+G + + SG +SGG S+
Sbjct: 616 ALVCDNVEDARRIAFGGHQRHKTVALDGTLFQKSGVISGGASD 658
>sp|O97593|SMC1A_BOVIN Structural maintenance of chromosomes protein 1A OS=Bos taurus
GN=SMC1A PE=1 SV=1
Length = 1233
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 121/246 (49%), Gaps = 18/246 (7%)
Query: 141 LSTQSKETKKLADLEAN---LEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLT 197
+ T++K +KL ++E N +EK++ +T K EE + E+ ++ R+ ++
Sbjct: 415 VETEAKIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRIDEIN 474
Query: 198 REEAKLLDQV-EKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGI 256
+E L+QV E+L +++ES + R +++ + +L + GRL DL
Sbjct: 475 KE----LNQVMEQLGDARIDRQESSRQQRKAE-IMESIKRLYP----GSVYGRLIDLCQP 525
Query: 257 DQK-YDIAVSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYD 314
QK Y IAV+ G ++ I+ ++ + G I +K Q +PLD ++ + +
Sbjct: 526 TQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTD--E 583
Query: 315 KYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGG-YRMVTLEG 373
K R + +ID+I+ + I+ A +A LV ++ A+RI + G ++ V L+G
Sbjct: 584 KLRELKGAKLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTVALDG 643
Query: 374 AIIEPS 379
+ + S
Sbjct: 644 TLFQKS 649
Score = 36.2 bits (82), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 415 TLVAQDLNQAKRIGYSGGG-YRMVTLEGAIIEPSGTMSGGGSN 456
LV ++ A+RI + G ++ V L+G + + SG +SGG S+
Sbjct: 616 ALVCDNVEDARRIAFGGHQRHKTVALDGTLFQKSGVISGGASD 658
>sp|P73340|SMC_SYNY3 Chromosome partition protein Smc OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=smc PE=3 SV=1
Length = 1200
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 111/245 (45%), Gaps = 10/245 (4%)
Query: 151 LADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKL 210
LA+L L KV L E++ + + A+ S+I + LA L +E + L + +L
Sbjct: 444 LAELTPLLTKVSVELEEKQFAQGQFNFQGEALTSQIQTLASDLAQLEQERSLLQETQTRL 503
Query: 211 AREVSEKRESMQTSRSNNRLID-----FVMQLKSENRVSGILGRLGDLGGIDQKYDIAVS 265
+E EK+ + + ++ + ++ ++ + G+ G + LG ++ +Y +A+
Sbjct: 504 LKEQQEKQRQLDKLEAASQAQQEVQGTYATKVILQSDLPGVCGLVAQLGQVEPQYQLALE 563
Query: 266 TACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPR 324
A G L ++V E A I +K+ GR +PL+K++ Q + +
Sbjct: 564 IAAGGRLGFLVVEDDGVAAAGIEILKQAKAGRATFLPLNKIRPPKGQNPNLSYAHGYIDL 623
Query: 325 LIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVA 384
++LI D + F F T+V L A+ G +R+VTLEG ++E S +
Sbjct: 624 AVNLIDG-DRRYADIFAFIFGNTIVFDTLVNARN---HLGKHRIVTLEGDLLEASGAMSG 679
Query: 385 QDLNQ 389
NQ
Sbjct: 680 GSRNQ 684
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 432 GGYRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRKAT-VSTDTSLVKDL 478
G +R+VTLEG ++E SG MSGG N GL R T VS DT+ VK L
Sbjct: 659 GKHRIVTLEGDLLEASGAMSGGSRNQRSGL--RFGTMVSEDTAEVKQL 704
>sp|Q8TZY2|SMC_PYRFU Chromosome partition protein Smc OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=smc PE=1 SV=2
Length = 1177
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 89/359 (24%), Positives = 167/359 (46%), Gaps = 66/359 (18%)
Query: 63 KNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSEL-----------KTVEKKGKESN 111
+N+ + +++ ++ L E ++K E+E +K + ++KK +E N
Sbjct: 312 RNIEVAKEELEDAQRRLAKTKEELRKVLSEIEKSKGAITRWKKRRDALINEIKKKEEERN 371
Query: 112 VIGSKFRW--SVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERK 169
V+ K F A R E D ELE + T+K+ ++E N+ ++Q +
Sbjct: 372 VLVVKLGEIDKTFGA-AREEFDSVVKELE-------ETTRKMYEIEGNIRRLQEEKEKLH 423
Query: 170 TLCEELTTRVPAMESEIAESRA----RLADLTREEAKL-----------------LDQVE 208
+ L ++P ++ +I E +A + A+++ E KL +++E
Sbjct: 424 SRILFLRAKLPGIKEKINEFKAVVEDKRAEISEIEGKLSTIQAKRIKVEKEIEAKSNELE 483
Query: 209 KLAREV-SEKRESM----QTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGI-DQKYDI 262
K+++E+ S +RE + Q NR + +LK + GI G L +L + D+ Y +
Sbjct: 484 KVSKELESSERELIAAEAQREVRGNRAAE---ELKRSG-IGGIYGTLAELIKVKDEAYAL 539
Query: 263 AVSTACG--ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPE 320
A+ A G A N +V + + A E I +K +GR+ +PL+K++ H +
Sbjct: 540 AIEVALGNRADNVVVEDELVA-EKAIKYLKEHKLGRLTFLPLNKIKPKHVD------SSV 592
Query: 321 NVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPS 379
+P +D+I+ D+KI A FA +T++ + +A+ G RMVT+EG + E S
Sbjct: 593 GLP-AVDVIEY-DQKIENAVKFALGDTVIVNSMEEAR---PHIGKVRMVTIEGELYERS 646
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 432 GGYRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVSTDT-SLVKDLEVKEKRLASLET 490
G RMVT+EG + E SG ++GG RGL + SL + E E L SL+
Sbjct: 631 GKVRMVTIEGELYERSGAITGGHFRA-RGLAVDTTKLREKVESLRRRKEALEGELNSLKI 689
Query: 491 ELRILSQQKMEVETQLNCTGNELKYKKQEYDTCL 524
ELR L E+ +L+ EL+ ++ + L
Sbjct: 690 ELRSLENASFELRIKLSDEKKELELASKDLNRLL 723
>sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1 OS=Arabidopsis
thaliana GN=SMC1 PE=2 SV=2
Length = 1218
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 106/450 (23%), Positives = 196/450 (43%), Gaps = 89/450 (19%)
Query: 7 KYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQR--------KHN------E 52
K +E EK R+Q +LKAL+ E R +EN +++ K N E
Sbjct: 210 KAQKEEAEKHLRLQ---EELKALKRE-RFLWQLYNIENDIEKANEDVDSEKSNRKDVMRE 265
Query: 53 IYQYERYVNM----------------KNLGEHETKVQQMEQELTANLESIKKCTDEMESA 96
+ ++ER K + E +K+ +++ EL E I + ++E+
Sbjct: 266 LEKFEREAGKRKVEQAKYLKEIAQREKKIAEKSSKLGKIQPELLRFKEEIARIKAKIETN 325
Query: 97 KSEL-KTVEKKGKESNVIGS--------KFRWSVFSAK---TRFECDIAKSELEIFLSTQ 144
+ ++ K ++KGK S I + +F+ K + + + S+L+ + +
Sbjct: 326 RKDVDKRKKEKGKHSKEIEQMQKSIKELNKKMELFNKKRQDSSGKLPMLDSQLQDYFRLK 385
Query: 145 SK---------------ETKKLADLEA--NLEKVQTTLTERKTLCEELTTRVPAMESEIA 187
+ E ++ DLEA NLE+ L RK +E R + EI
Sbjct: 386 EEAGMKTIKLRDEHEVLERQRRTDLEALRNLEENYQQLINRKNDLDEQIKRFKDRQGEIE 445
Query: 188 ESRARLADLT-----------------RE-EAKLLDQVEKLAREVSEKRESMQTSRSNNR 229
S ++ + T RE AKL ++ +L ++S+ + ++R
Sbjct: 446 TSSSKYKNETTSLKTELRALQEKHVNAREASAKLKTRIAELEDQLSDLTAERYENERDSR 505
Query: 230 LIDFVMQLKSENRVSGILGRLGDLGGID-QKYDIAVSTACGA-LNYIVTETVEAGEAVIA 287
L V LK G+ GR+ DL + +KY++AV+ A G ++ +V E G+ I
Sbjct: 506 LTQAVESLK--RLFQGVHGRMTDLCRPNRKKYNLAVTVAMGRFMDAVVVEDENTGKDCIK 563
Query: 288 AVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLI-DLIQVQDEKIRLAFYFATRE 346
+K Q + + IPL ++ Q +++ R +L+ D+IQ D ++ A +A
Sbjct: 564 YLKEQRLPPMTFIPLQSVR--VKQVFERLRNLGGTAKLVFDVIQF-DPELEKAVLYAVGN 620
Query: 347 TLVAQDLNQAKRIGYSGGGYRMVTLEGAII 376
TLV +L +AK + +SG +++VT++G ++
Sbjct: 621 TLVCDELEEAKVLSWSGERFKVVTVDGILL 650
>sp|P47540|SMC_MYCGE Chromosome partition protein Smc OS=Mycoplasma genitalium (strain
ATCC 33530 / G-37 / NCTC 10195) GN=smc PE=3 SV=1
Length = 982
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 107/223 (47%), Gaps = 36/223 (16%)
Query: 177 TRVPAMESEIAESRARLADLTR---EEAKLLDQV----EKLAREVSEKRE-----SMQTS 224
T++ E++++ S+ + DL + E+ L+DQ+ EK ++ +R +QT+
Sbjct: 338 TQLDGFENQLSNSKTTITDLEKLINEQKSLVDQIKLQIEKNTADLIYQRSLKTIIELQTN 397
Query: 225 ---RSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACG-ALNYIVTETVE 280
++NN I +K+ N ++GIL LG D++Y+ A+ A G ++ Y+V
Sbjct: 398 ELKKTNNANI----LVKNANALTGILNTLGTFLKFDKQYEKAILKALGKSIGYLVVNNNN 453
Query: 281 AGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPEN---VPRLIDLIQVQDEKIR 337
A I + + +G+V +PLD + D T E+ + +L + V + ++
Sbjct: 454 AAIQAIDFLVKNEIGKVTFLPLDDV------ASDTKITNEHMEILKQLDGFLGVCSDHVK 507
Query: 338 LAFYFAT------RETLVAQDLNQAKRI-GYSGGGYRMVTLEG 373
F + ++A+DLN A + Y+ YR+VTL+G
Sbjct: 508 CDPLFQPVVNTLLAQVIIAKDLNSAINLSNYTYKLYRIVTLDG 550
Score = 37.4 bits (85), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 15/106 (14%)
Query: 413 SETLVAQDLNQAKRI-GYSGGGYRMVTLEGAIIEPSGTMSGG--GSNPIRGLMGRKATVS 469
++ ++A+DLN A + Y+ YR+VTL+G + G ++GG +N G + ++ S
Sbjct: 521 AQVIIAKDLNSAINLSNYTYKLYRIVTLDGETVYAGGIINGGFEKTNLSDGYL---SSAS 577
Query: 470 TDTSLVKDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKY 515
D E+ + LE R L ++ E+E +L+ +LKY
Sbjct: 578 LDN---------EQNINKLENNERELKKELTELEVKLDEMNRKLKY 614
>sp|Q00737|SUDA_EMENI Chromosome segregation protein sudA OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=sudA PE=2 SV=3
Length = 1215
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 18/178 (10%)
Query: 195 DLTREEAKLLDQVEKLAREV--SEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGD 252
+L REEAKL + + EV +E+ S + +R I V ++K ++ + G+ G L +
Sbjct: 487 ELWREEAKLDSILINASNEVDRAERNLSQMMDHNTSRGIAAVRRIKRQHNLEGVYGTLAE 546
Query: 253 LGGIDQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQ 311
L ++ +Y AV G +L + V +T + V+ ++ + GRV +PL++++
Sbjct: 547 LFEVNDRYRTAVEVTAGQSLFHYVVDTDDTATKVLEILQHEKAGRVTFMPLNRLRT---- 602
Query: 312 CYDKYRTPENVPRLIDLIQV-----QDEKIRLAFYFATRETLVAQDLNQAKRIGYSGG 364
P N+P+ D I + D AF +T++ +L A + S G
Sbjct: 603 ------KPLNMPKASDTIPMIEKLQYDRAYEKAFQHVFGKTIICPNLQVASQYARSHG 654
>sp|Q56YN8|SMC3_ARATH Structural maintenance of chromosomes protein 3 OS=Arabidopsis
thaliana GN=SMC3 PE=2 SV=1
Length = 1204
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 96/451 (21%), Positives = 192/451 (42%), Gaps = 83/451 (18%)
Query: 1 MEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYV 60
+EV K EE T+ RV+ + D K+L+ L++ EL+ + K E + ++
Sbjct: 242 VEVARTKASEESTKMYDRVEKAQDDSKSLDESLKELTK--ELQTLYKEK--ETVEAQQTK 297
Query: 61 NMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKT---------------VEK 105
+K + E V+ + +T N++S +++ + + E++ V+K
Sbjct: 298 ALKKKTKLELDVKDFQDRITGNIQSKNDALEQLNTVEREMQDSLRELEAIKPLYESQVDK 357
Query: 106 KGKESNVIG-----------SKFRWSVFSAKTRFECDIAKS--ELEIFLSTQSKETKKLA 152
+ + S I + R + FS K + + K +L+ L + + + +KL
Sbjct: 358 ENQTSKRINELEKTLSILYQKQGRATQFSNKAARDKWLRKEIEDLKRVLDSNTVQEQKLQ 417
Query: 153 DLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTR-------------- 198
D + ++ T LTER ++ + +ES I++S R
Sbjct: 418 D---EILRLNTDLTERDEHIKKHEVEIGELESRISKSHELFNTKKRERDEEQRKRKEKWG 474
Query: 199 EEAKLLDQVEKLAREVSEKRESMQTSRSNN--RLIDFVMQLKSENRVSGILGRLGDLGGI 256
EE++L +++KL E+ ++++ + + R ++ + ++ ++ R++G+ G L +L
Sbjct: 475 EESQLSSEIDKLKTELERAKKNLDHATPGDVRRGLNSIRRICADYRINGVFGPLVELVDC 534
Query: 257 DQKYDIAVS-TACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDK 315
D+K+ AV TA +L +V E + +I + GRV +PL+++
Sbjct: 535 DEKFFTAVEVTAGNSLFNVVVENDDISTKIIRHLNSLKGGRVTFLPLNRI---------- 584
Query: 316 YRTPE-NVPRLIDLIQVQ-----DEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMV 369
+ P N P+ D I + D K A T+V +DLN A R+ +
Sbjct: 585 -KAPRVNYPKDSDAIPLLKKLKFDSKFEPALGQVFGRTVVCRDLNVATRVA-KNDDLDCI 642
Query: 370 TLEGAIIEPSETLVAQDLNQAKRIGYSGGGY 400
T+EG + +++ G +GG Y
Sbjct: 643 TMEGDQV-------------SRKGGMTGGFY 660
>sp|B8CW13|SMC_HALOH Chromosome partition protein Smc OS=Halothermothrix orenii (strain
H 168 / OCM 544 / DSM 9562) GN=smc PE=3 SV=1
Length = 1185
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 123/275 (44%), Gaps = 42/275 (15%)
Query: 154 LEANLEKVQTT----------LTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKL 203
LE +++++TT L ER+ ++L T + +++++I E R+ L DL EE L
Sbjct: 412 LEEEIKRIKTTRDKISSEYDALNERE---DKLRTYLKSVDNKIEEKRSVLTDLKEEELNL 468
Query: 204 LDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQ------------LKSENRVSGILGRLG 251
++E+ + + R + S+ ++ + LK+ ++++GI+G +
Sbjct: 469 QARLEEAKKRFNRTRNKLNEKNSHLSILHEMEDSLEGYYRGVKNILKARSKLTGIIGVVA 528
Query: 252 DLGGIDQKYDIAVSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHS 310
D +D+KY++A+ TA G L I+ + ++ + +K G+ +P++ +
Sbjct: 529 DQIEVDKKYELAIETALGGRLQNIIVKDDKSARECVDYLKETKGGQATFLPVNMVNGR-- 586
Query: 311 QCYDKYRTPENVPRLID--------LIQVQDEKIRLAFYFATRETLVAQDLNQAKRIG-Y 361
K N + +D + +D + Y R T+++ DL A I
Sbjct: 587 ----KVNFKNNQVKKVDGFLGIASSFVDCEDYLKPVIEYLLGR-TIISTDLKSAIEIARL 641
Query: 362 SGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYS 396
G+++VTLEG +I + N K++ S
Sbjct: 642 RKRGFKIVTLEGDVINSGGAITGGSKNSNKKMLLS 676
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 388 NQAKRI-GYSGGGYRMVTLEG---AIIE--PSETLVAQDLNQAKRIG-YSGGGYRMVTLE 440
NQ K++ G+ G V E +IE T+++ DL A I G+++VTLE
Sbjct: 593 NQVKKVDGFLGIASSFVDCEDYLKPVIEYLLGRTIISTDLKSAIEIARLRKRGFKIVTLE 652
Query: 441 GAIIEPSGTMSGGGSNPIRGLM 462
G +I G ++GG N + ++
Sbjct: 653 GDVINSGGAITGGSKNSNKKML 674
>sp|O93308|SMC1A_XENLA Structural maintenance of chromosomes protein 1A OS=Xenopus laevis
GN=smc1a PE=1 SV=1
Length = 1232
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 119/246 (48%), Gaps = 18/246 (7%)
Query: 141 LSTQSKETKKLADLEAN---LEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLT 197
+ T++K +KL +LE N +EK++ + K EE + E+ ++ R+ ++
Sbjct: 415 VETEAKIKQKLRELEENQKRIEKLEEYIATSKQSLEEQKNLEETLTEEVEMAKRRIDEIN 474
Query: 198 REEAKLLDQV-EKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGI 256
E L+QV E+L +++ES + R +++ + +L + GRL DL
Sbjct: 475 SE----LNQVMEQLGDARIDRQESSRQQRKAE-IMESIKRLYP----GSVYGRLIDLCQP 525
Query: 257 DQK-YDIAVSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYD 314
QK Y IAV+ G ++ I+ ++ + G I +K Q +PLD ++ + +
Sbjct: 526 TQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTD--E 583
Query: 315 KYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGG-YRMVTLEG 373
+ R + +ID+I+ + I+ A +A LV ++ A+RI + G ++ V L+G
Sbjct: 584 RLRELKGAKLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTVALDG 643
Query: 374 AIIEPS 379
+ + S
Sbjct: 644 TLFQKS 649
Score = 36.2 bits (82), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 415 TLVAQDLNQAKRIGYSGGG-YRMVTLEGAIIEPSGTMSGGGSN 456
LV ++ A+RI + G ++ V L+G + + SG +SGG S+
Sbjct: 616 ALVCDNVEDARRIAFGGHQRHKTVALDGTLFQKSGVISGGASD 658
>sp|P32908|SMC1_YEAST Structural maintenance of chromosomes protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC1 PE=1
SV=1
Length = 1225
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 110/230 (47%), Gaps = 17/230 (7%)
Query: 154 LEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLARE 213
L+ L ++ +L E+ L E + ++S+I + + DL + + L +++ L+
Sbjct: 446 LDTQLNDLRVSLNEKNALHTERLHELKKLQSDIESANNQEYDLNFKLRETLVKIDDLS-- 503
Query: 214 VSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDL-GGIDQKYDIAVSTACGA-L 271
+ +RE+M+ + L + + LK G+ G + DL +KY +AVST G
Sbjct: 504 -ANQRETMKERK----LRENIAMLKR--FFPGVKGLVHDLCHPKKEKYGLAVSTILGKNF 556
Query: 272 NYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQV 331
+ ++ E + + IA +K+Q G + IPLD ++ P++ ++ + +
Sbjct: 557 DSVIVENLTVAQECIAFLKKQRAGTASFIPLDTIETELPTL----SLPDSQDYILSINAI 612
Query: 332 QDE-KIRLAFYFATRETLVAQDLNQAKRIGYSGGGY-RMVTLEGAIIEPS 379
E + A + ++++ LN AK + + G ++VT+EGA+I +
Sbjct: 613 DYEPEYEKAMQYVCGDSIICNTLNIAKDLKWKKGIRGKLVTIEGALIHKA 662
>sp|Q88WJ9|SMC_LACPL Chromosome partition protein Smc OS=Lactobacillus plantarum (strain
ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=smc PE=3 SV=1
Length = 1185
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 84/163 (51%), Gaps = 8/163 (4%)
Query: 150 KLADLEANLEKVQTTLT----ERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLD 205
+LA +ANL++VQTT+ E++ L +++ + + ++ A+ + + ++ + LD
Sbjct: 420 RLAQAQANLKRVQTTVDVHNREQRDLENQVSQQQATLTAQQAQVKTNAERIDEQQQRWLD 479
Query: 206 QVEKLAREVSEKRESMQT--SRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIA 263
+ RE S + E++Q R N M L+ + SG+ G + +L + +Y A
Sbjct: 480 AAGLMQREKS-RLEALQAVQERYTNFYAGVRMVLQHRQQFSGVAGAVSELLTVPDQYTKA 538
Query: 264 VSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKM 305
V A G L IV +T + + V+ +K+ + GR +P++++
Sbjct: 539 VEVALGGQLQNIVCDTQQTAKTVVNFLKQNHAGRATFLPIERI 581
>sp|P47037|SMC3_YEAST Structural maintenance of chromosomes protein 3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC3 PE=1
SV=1
Length = 1230
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 82/368 (22%), Positives = 164/368 (44%), Gaps = 47/368 (12%)
Query: 57 ERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSK 116
+R ++ L E ++ ++Q +Q+L+ L ++ T E K +L ++++K ++ +I K
Sbjct: 330 QRNLDSATLKEIKSIIEQRKQKLSKILPRYQELTKEEAMYKLQLASLQQKQRD--LILKK 387
Query: 117 FRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTER-------- 168
++ F +K + I SE+E S+ + L +LE+ L+ +T+L ++
Sbjct: 388 GEYARFKSKDERDTWI-HSEIEELKSS----IQNLNELESQLQMDRTSLRKQYSAIDEEI 442
Query: 169 ------------KTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSE 216
K E+ + + ++ +++ES +L R+E KL +E L +V++
Sbjct: 443 EELIDSINGPDTKGQLEDFDSELIHLKQKLSESLDTRKELWRKEQKLQTVLETLLSDVNQ 502
Query: 217 KR----ESMQTSRSNNRLIDFVMQLKSENRVS--GILGRLGDLGGIDQKYDIAVSTACG- 269
+ E+M S +N I V ++ + ++S + G LG+L ++ KY G
Sbjct: 503 NQRNVNETMSRSLANG--IINVKEITEKLKISPESVFGTLGELIKVNDKYKTCAEVIGGN 560
Query: 270 ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLI 329
+L +IV +T E ++ + R GRV IPL+++ + P N I
Sbjct: 561 SLFHIVVDTEETATLIMNELYRMKGGRVTFIPLNRL-----SLDSDVKFPSNTTTQIQFT 615
Query: 330 QV-----QDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVA 384
+ + + A +T+V +DL Q ++ +TL+G + L
Sbjct: 616 PLIKKIKYEPRFEKAVKHVFGKTIVVKDLGQGLKLA-KKHKLNAITLDGDRADKRGVLTG 674
Query: 385 QDLNQAKR 392
L+Q KR
Sbjct: 675 GYLDQHKR 682
>sp|Q8NDV3|SMC1B_HUMAN Structural maintenance of chromosomes protein 1B OS=Homo sapiens
GN=SMC1B PE=1 SV=2
Length = 1235
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 96/232 (41%), Gaps = 18/232 (7%)
Query: 161 VQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRES 220
VQ L + K E+ R+ +E L + ++E L+D++EK +SE E
Sbjct: 417 VQGNLKQIKEQIEDHKKRIEKLEEYTKTCMDCLKEKKQQEETLVDEIEKTKSRMSEFNEE 476
Query: 221 MQTSRS--NNRLIDFVMQLKSENRV-----------SGILGRLGDL-GGIDQKYDIAVST 266
+ RS N ID + + R + GRL DL I +KY +AV+
Sbjct: 477 LNLIRSELQNAGIDTHEGKRQQKRAEVLEHLKRLYPDSVFGRLFDLCHPIHKKYQLAVTK 536
Query: 267 ACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRL 325
G + IV + + + I +K + + LD + ++ R + +
Sbjct: 537 VFGRFITAIVVASEKVAKDCIRFLKEERAEPETFLALDYLDI--KPINERLRELKGCKMV 594
Query: 326 IDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGG-GYRMVTLEGAII 376
ID+I+ Q +++ F LV + + +A+ I SG + V L+G +
Sbjct: 595 IDVIKTQFPQLKKVIQFVCGNGLVCETMEEARHIALSGPERQKTVALDGTLF 646
>sp|P41508|SMC_MYCHR Chromosome partition protein Smc OS=Mycoplasma hyorhinis GN=smc
PE=1 SV=2
Length = 979
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 10/145 (6%)
Query: 245 GILGRLGDLGGIDQKYDIAVSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLD 303
G +G +L ++ ++ +A+ T GA LN IV +T E I +K+ G+ IPL
Sbjct: 420 GYIGLASELFKVESEFSLAIETVLGAALNQIVMKTSEDVLQAIDFLKKNLSGKATFIPLT 479
Query: 304 KMQQY-----HSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKR 358
+++ H + V + +LI+ D + F F LV +++ A R
Sbjct: 480 SIKEREVREDHLLVLKGQKGFLGVAK--ELIEF-DTQFNKLFGFLLGNILVVDNVDNANR 536
Query: 359 IG-YSGGGYRMVTLEGAIIEPSETL 382
I Y +V+LEG + P T+
Sbjct: 537 IAKILDHKYTIVSLEGDLFRPGGTI 561
Score = 35.8 bits (81), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 12/110 (10%)
Query: 416 LVAQDLNQAKRIG-YSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVSTDTSL 474
LV +++ A RI Y +V+LEG + P GT++GG ++ + T+
Sbjct: 526 LVVDNVDNANRIAKILDHKYTIVSLEGDLFRPGGTITGGSKLERTSILNYDIKIKEHTNT 585
Query: 475 VK-------DLEVKEKRLAS-LETELRILSQQKME---VETQLNCTGNEL 513
+K DL++K++ + + +ET + Q K+E + ++LN EL
Sbjct: 586 LKFAEDQIHDLKIKQQTIYNEIETVNSTIQQVKIEANSINSKLNILNEEL 635
>sp|P41003|SMC2_SCHPO Structural maintenance of chromosomes protein 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cut14 PE=1 SV=2
Length = 1172
Score = 41.2 bits (95), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 111/237 (46%), Gaps = 26/237 (10%)
Query: 172 CEELTTRVPAMESEIAESRARL----ADLTREEAKLLDQVEKLAREVSEKRESMQTSRSN 227
C++L + +++ + + + L +D+T E+ L ++++LA++ + +S
Sbjct: 444 CDQLNREIDILQNHVEKLKMSLKNTNSDITGEDV-LQQKLKQLAKDRGNLLNELDALKSK 502
Query: 228 NRLIDFVMQLKSEN----RVSGILGRLGDLGGIDQKYDIAVS---TACGALNYIVTETVE 280
++F + N +V G++ +L L ++ YD + TA G L ++ ET +
Sbjct: 503 LAYMEFTYTDPTPNFDRSKVKGLVAQLLTLN--EENYDKQTALEITAGGRLYNLIVETEK 560
Query: 281 AGEAVI--AAVKRQNVGRVNVIPLDKMQQYHSQCY---DKYRTPENVPRL-IDLIQVQDE 334
G ++ +KR RV +IPL+K+ + + + N +L ++LI DE
Sbjct: 561 IGAQLLQKGNLKR----RVTIIPLNKITSFVASAERVGAAKKISNNKAQLALELIGYDDE 616
Query: 335 KIRLAFYFATRETLVAQDLNQAKRIGYSGG-GYRMVTLEGAIIEPSETLVAQDLNQA 390
+ A + TLV AK++ + + VTL+G + +PS TL +N++
Sbjct: 617 LLP-AMQYVFGSTLVCDTPESAKKVTFHPSVKLKSVTLDGDVYDPSGTLTGGSVNKS 672
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 415 TLVAQDLNQAKRIGYSGG-GYRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVSTDTS 473
TLV AK++ + + VTL+G + +PSGT++GG N G + + S
Sbjct: 628 TLVCDTPESAKKVTFHPSVKLKSVTLDGDVYDPSGTLTGGSVNKSAGPL---LQIQKLNS 684
Query: 474 LVKDLEVKEKRLASLETELRILSQQ-----KMEVETQL 506
L L+V LET+L+ L Q ++E E QL
Sbjct: 685 LQLKLQVVTSEYEKLETQLKDLKTQNANFHRLEQEIQL 722
>sp|O95347|SMC2_HUMAN Structural maintenance of chromosomes protein 2 OS=Homo sapiens
GN=SMC2 PE=1 SV=2
Length = 1197
Score = 40.8 bits (94), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 12/83 (14%)
Query: 415 TLVAQDLNQAKRIGYSGG-GYRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVSTDTS 473
T V +++ AK++ + R VTL G + +P GT+SGG + A++ T
Sbjct: 627 TFVCDNMDNAKKVAFDKRIMTRTVTLGGDVFDPHGTLSGGAR-------SQAASILTKFQ 679
Query: 474 LVKD----LEVKEKRLASLETEL 492
+KD L +KE L +LE EL
Sbjct: 680 ELKDVQDELRIKENELRALEEEL 702
>sp|Q8CG48|SMC2_MOUSE Structural maintenance of chromosomes protein 2 OS=Mus musculus
GN=Smc2 PE=1 SV=2
Length = 1191
Score = 40.8 bits (94), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Query: 415 TLVAQDLNQAKRIGYSGG-GYRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVSTDTS 473
T V +++ AK++ + R VTL G + +P GT+SGG + A++ T
Sbjct: 627 TFVCNNMDNAKKVAFDKRIMTRTVTLGGDVFDPHGTLSGGAR-------SQAASILTKFQ 679
Query: 474 LVKD----LEVKEKRLASLETEL 492
VKD L KE L +LE EL
Sbjct: 680 EVKDVQDELRTKENELRALEEEL 702
>sp|Q8IED2|SMC2_PLAF7 Structural maintenance of chromosomes protein 2 OS=Plasmodium
falciparum (isolate 3D7) GN=MAL13P1.96 PE=3 SV=1
Length = 1218
Score = 40.4 bits (93), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 415 TLVAQDLNQAKRIGYSGG---GYRMVTLEGAIIEPSGTMSGGGSNPIRGLM-------GR 464
TL+ +++ K+I Y+ Y +TLEG + SG+MSGG + I + +
Sbjct: 642 TLICSNVDLCKKITYNPNKKLSYTTITLEGDKFDTSGSMSGGSNKNINLFLLNYEKYKHK 701
Query: 465 KATVSTDTSLVKDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNEL 513
K + + +K++ K K L E + +I+S++ E LN N +
Sbjct: 702 KEQYHDNENKLKEVSEKLKSLEKAEEKKKIISKELQIYENNLNNIENRM 750
>sp|Q9C5Y4|SMC21_ARATH Structural maintenance of chromosomes protein 2-1 OS=Arabidopsis
thaliana GN=SMC2-1 PE=2 SV=2
Length = 1175
Score = 40.4 bits (93), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 21/148 (14%)
Query: 266 TACGALNYIVTETVEAGEAVI--AAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTP---- 319
TA G L +V ++ + G+ ++ A++R RV +IPL+K+Q Y Q + T
Sbjct: 542 TAGGKLYDVVVDSEDTGKQLLQNGALRR----RVTIIPLNKIQSYVVQPRVQQATARLVG 597
Query: 320 -ENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGG-GYRMVTLEGAIIE 377
+N + L+ DE ++ A + T V + + AK + ++ VTLEG I +
Sbjct: 598 KDNAELALSLVGYSDE-LKNAMEYVFGSTFVCKTTDVAKEVAFNRDIRTPSVTLEGDIFQ 656
Query: 378 PSETLVAQDLNQAKRIGYSGGGYRMVTL 405
PS L GGG R+ L
Sbjct: 657 PSGLLTGG--------SRKGGGDRLRKL 676
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 11/68 (16%)
Query: 437 VTLEGAIIEPSGTMSG----GGSNPIRGLMGRKATVSTDTSLVKDLEVKEKRLASLETEL 492
VTLEG I +PSG ++G GG + +R L S +L+ +KRLA +E+++
Sbjct: 648 VTLEGDIFQPSGLLTGGSRKGGGDRLRKLHDLAEAES-------ELQGHQKRLADVESQI 700
Query: 493 RILSQQKM 500
+ L +M
Sbjct: 701 KELQPLQM 708
>sp|Q8REH4|SMC_FUSNN Chromosome partition protein Smc OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=smc PE=3 SV=2
Length = 1183
Score = 39.3 bits (90), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 243 VSGILGRLGDLGGIDQKYDIAVSTAC-GALNYIVTETVEAGEAVIAAVKRQNVGRVNVIP 301
+SGI G L L D+KY+ AV A G L I+ E E + IA + + +GR + +
Sbjct: 518 ISGIDGVLISLINFDEKYEKAVEAAIPGNLQDIIVEDKEVAKKCIAFLTEKKLGRTSFLA 577
Query: 302 LDKMQ 306
LD ++
Sbjct: 578 LDTIK 582
>sp|Q552D9|SMC3_DICDI Structural maintenance of chromosome protein 3 OS=Dictyostelium
discoideum GN=smc3 PE=3 SV=1
Length = 1437
Score = 38.1 bits (87), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 16/148 (10%)
Query: 236 QLKSENRVSGILGRLGDLGGI-DQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQN 293
Q++ E ++ GI G L +L I + + +A+ G L ++V +T + ++ + +N
Sbjct: 514 QIRQEGKIKGIHGPLVELFDIVEPEATLALEVVGGNGLFHVVVDTDDTASKILEILNTEN 573
Query: 294 VGRVNVIPLDKMQQYHSQCYDKYRTPEN-----VPRLIDLIQVQDEKIRLAFYFATRETL 348
+GR++ IPL++++ K+ EN + ++I + E ++L F +TL
Sbjct: 574 IGRLSFIPLNRVRTKPP----KFPILENDLVCPLIKVISFDPIYTEAMKLVF----GKTL 625
Query: 349 VAQDLNQAKRIGYSGGGYRMVTLEGAII 376
+ +D A+++ S +T EG +
Sbjct: 626 ICKDEATAEQVRKS-SHVDCITFEGDVF 652
>sp|Q292S8|COS_DROPS Kinesin-like protein costa OS=Drosophila pseudoobscura
pseudoobscura GN=cos PE=3 SV=2
Length = 1223
Score = 35.8 bits (81), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 17/151 (11%)
Query: 86 IKKCTDEMESAKSELKTVEKKGK-ESNVIG-----------SKFRWSVFSAKTRFECDIA 133
++K E+E + +LK +E+ + + N+I +K R+ AK ECD A
Sbjct: 671 LRKLHAEIEGRQRQLKEIEQTMQVKQNIISELVKNSDTRSHAKQRFQKKKAKLEAECDKA 730
Query: 134 KSELE--IFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRA 191
K L + + ET++ + + A++E L+ K + E ++ ++ +AESR
Sbjct: 731 KKHLAKALIQGREKGETERWSAIIAHIEHRLEDLSSMKHIAGESGQKLKKLQQSMAESRK 790
Query: 192 RLADL---TREEAKLLDQVEKLAREVSEKRE 219
+ +L R+E+KL DQ+E ++ E R+
Sbjct: 791 QQEELEKKIRKESKLRDQLETELAKLKESRD 821
>sp|P91349|SPD5_CAEEL Spindle-defective protein 5 OS=Caenorhabditis elegans GN=spd-5 PE=1
SV=2
Length = 1198
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 16/155 (10%)
Query: 79 LTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSAKT-RFECDIAKSEL 137
T+N + ++K +E+ K+EL+ + S + GS R S T R D+ SE
Sbjct: 695 FTSNSDIVEKLQNEVSELKNELEMARTRDMRSPLNGSSGRLSDVQINTNRMFEDLEVSEA 754
Query: 138 EIFLSTQSKETKK--LADLEANLEKVQTTLTERKTLCE----------ELTTRVPAMESE 185
+ + + T K A+LEANL +V + L E + CE E TRV A E+
Sbjct: 755 TLQKAKEENSTLKSQFAELEANLHQVNSKLGEVR--CELNEALARVDGEQETRVKA-ENA 811
Query: 186 IAESRARLADLTREEAKLLDQVEKLAREVSEKRES 220
+ E+R ++ L EE +L + + ++E ++S
Sbjct: 812 LEEARQLISSLKHEENELKKTITDMGMRLNEAKKS 846
>sp|Q65NQ9|CWLO_BACLD Peptidoglycan DL-endopeptidase CwlO OS=Bacillus licheniformis
(strain DSM 13 / ATCC 14580) GN=cwlO PE=3 SV=1
Length = 452
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 14/69 (20%)
Query: 149 KKLADLEANLEKVQTTLTERKTL--------------CEELTTRVPAMESEIAESRARLA 194
K ++DL L+++Q TL + KTL ++L T+ A ESE+++ +
Sbjct: 179 KAMSDLNTKLDEIQKTLADLKTLKSDLDKQLKEQANLSKQLQTKQAAAESELSDLKKEAG 238
Query: 195 DLTREEAKL 203
LT+EEA L
Sbjct: 239 SLTKEEAAL 247
>sp|Q8KBS6|SMC_CHLTE Chromosome partition protein Smc OS=Chlorobium tepidum (strain ATCC
49652 / DSM 12025 / TLS) GN=smc PE=3 SV=1
Length = 1183
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 91/208 (43%), Gaps = 25/208 (12%)
Query: 186 IAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRS-----NNR--LIDFVMQLK 238
I E + L +L +EE +L+ + + +K+E + + +S NNR L + +++ K
Sbjct: 444 IEEKKIALDELKKEEERLVALKASITEQSEKKKEELLSLKSEHNHLNNRIALCNSILE-K 502
Query: 239 SENRVSGI------------LGRLGDLGGIDQKYDIAVSTACG-ALNYIVTETVEAGEAV 285
E G+ LG L DL + + A++ A G +L Y + +E
Sbjct: 503 FEGLPEGVAFLEKQRAGKPGLGCLSDLISVRENDKKAINAALGESLGYYLCRNLEEARLA 562
Query: 286 IAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATR 345
++++ + + G+V+ + LD + Y E R IDL++ E + A +
Sbjct: 563 VSSLAKADKGKVHFLILDLID---GGAKIDYAEIEGARRAIDLVETPAE-LSKALNLLLQ 618
Query: 346 ETLVAQDLNQAKRIGYSGGGYRMVTLEG 373
V DL+ A+++G +T +G
Sbjct: 619 HCYVVADLDAAEQLGKKHPEALFITEKG 646
>sp|Q8VDD5|MYH9_MOUSE Myosin-9 OS=Mus musculus GN=Myh9 PE=1 SV=4
Length = 1960
Score = 33.5 bits (75), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 80/165 (48%), Gaps = 13/165 (7%)
Query: 68 HETKVQQMEQ-------ELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWS 120
HE ++Q+M Q EL LE K+ +E AK L+ ++G+ +N + + +
Sbjct: 1183 HEAQIQEMRQKHSQAVEELADQLEQTKRVKATLEKAKQTLEN--ERGELANEVKALLQGK 1240
Query: 121 VFSAKTRFECDIAKSELEIFLSTQSKETKKLAD----LEANLEKVQTTLTERKTLCEELT 176
S R + + EL++ S + +LAD L+ L+ V L++ + +LT
Sbjct: 1241 GDSEHKRKKVEAQLQELQVKFSEGERVRTELADKVTKLQVELDSVTGLLSQSDSKSSKLT 1300
Query: 177 TRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESM 221
A+ES++ +++ L + R++ L +++++ E + RE +
Sbjct: 1301 KDFSALESQLQDTQELLQEENRQKLSLSTKLKQMEDEKNSFREQL 1345
>sp|Q62812|MYH9_RAT Myosin-9 OS=Rattus norvegicus GN=Myh9 PE=1 SV=3
Length = 1961
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 79/165 (47%), Gaps = 13/165 (7%)
Query: 68 HETKVQQMEQ-------ELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWS 120
HE ++Q+M Q EL LE K+ +E AK L+ ++G+ +N + + +
Sbjct: 1183 HEAQIQEMRQKHSQAVEELAEQLEQTKRVKATLEKAKQTLEN--ERGELANEVKALLQGK 1240
Query: 121 VFSAKTRFECDIAKSELEIFLSTQSKETKKLAD----LEANLEKVQTTLTERKTLCEELT 176
S R + + EL++ S + +LAD L+ L+ V L + + +LT
Sbjct: 1241 GDSEHKRKKVEAQLQELQVKFSEGERVRTELADKVSKLQVELDSVTGLLNQSDSKSSKLT 1300
Query: 177 TRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESM 221
A+ES++ +++ L + R++ L +++++ E + RE +
Sbjct: 1301 KDFSALESQLQDTQELLQEENRQKLSLSTKLKQMEDEKNSFREQL 1345
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,627,235
Number of Sequences: 539616
Number of extensions: 7016671
Number of successful extensions: 32167
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 1230
Number of HSP's that attempted gapping in prelim test: 27691
Number of HSP's gapped (non-prelim): 4671
length of query: 531
length of database: 191,569,459
effective HSP length: 122
effective length of query: 409
effective length of database: 125,736,307
effective search space: 51426149563
effective search space used: 51426149563
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)