Query psy14063
Match_columns 531
No_of_seqs 354 out of 2397
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 18:37:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0996|consensus 100.0 9.4E-43 2E-47 361.1 49.5 448 3-525 274-827 (1293)
2 COG1196 Smc Chromosome segrega 100.0 4.4E-35 9.6E-40 331.4 49.9 381 5-456 181-658 (1163)
3 TIGR02169 SMC_prok_A chromosom 100.0 4.7E-32 1E-36 313.6 50.2 116 243-360 520-636 (1164)
4 KOG0964|consensus 100.0 9.2E-32 2E-36 274.0 44.8 244 140-457 416-662 (1200)
5 KOG0018|consensus 100.0 1.9E-29 4.2E-34 260.9 44.2 213 172-456 432-646 (1141)
6 KOG0933|consensus 100.0 4.1E-27 9E-32 241.4 39.0 362 25-460 206-671 (1174)
7 KOG0250|consensus 99.9 2.9E-22 6.3E-27 210.0 48.4 361 5-375 223-631 (1074)
8 TIGR02168 SMC_prok_B chromosom 99.9 1.8E-19 3.9E-24 209.4 48.3 119 243-362 518-640 (1179)
9 PF06470 SMC_hinge: SMC protei 99.8 1.4E-19 3E-24 151.7 12.1 117 244-360 2-120 (120)
10 KOG0979|consensus 99.7 1.1E-14 2.3E-19 151.7 34.8 331 4-344 189-551 (1072)
11 TIGR02169 SMC_prok_A chromosom 99.7 4.2E-14 9E-19 164.4 36.6 127 319-455 521-660 (1164)
12 TIGR02168 SMC_prok_B chromosom 99.7 3.8E-13 8.2E-18 156.7 42.6 41 319-360 519-562 (1179)
13 KOG0964|consensus 99.7 2.2E-13 4.8E-18 140.9 33.8 126 318-461 521-659 (1200)
14 COG1196 Smc Chromosome segrega 99.7 5.6E-13 1.2E-17 152.1 39.1 425 7-460 176-655 (1163)
15 KOG0018|consensus 99.5 3.4E-10 7.4E-15 119.3 40.1 95 5-99 169-263 (1141)
16 KOG0996|consensus 99.4 3.8E-09 8.1E-14 112.5 40.2 191 317-525 614-820 (1293)
17 KOG0250|consensus 99.4 2.7E-08 5.8E-13 106.2 45.5 449 12-526 223-711 (1074)
18 KOG0933|consensus 99.3 5.4E-08 1.2E-12 102.3 39.1 133 321-462 521-666 (1174)
19 PRK04863 mukB cell division pr 99.1 1.5E-07 3.3E-12 107.8 34.9 48 243-292 682-731 (1486)
20 PF00261 Tropomyosin: Tropomyo 98.7 2.9E-05 6.4E-10 72.6 26.9 211 5-224 3-216 (237)
21 TIGR02680 conserved hypothetic 98.6 0.0031 6.7E-08 73.8 44.6 94 10-103 223-323 (1353)
22 PF00261 Tropomyosin: Tropomyo 98.5 6.1E-05 1.3E-09 70.5 24.5 32 5-36 10-41 (237)
23 PRK04863 mukB cell division pr 98.4 0.011 2.4E-07 68.9 43.1 98 4-101 301-400 (1486)
24 PRK02224 chromosome segregatio 98.3 0.00092 2E-08 75.7 31.0 43 7-49 472-514 (880)
25 PRK02224 chromosome segregatio 98.3 0.00066 1.4E-08 76.9 28.9 22 202-223 409-430 (880)
26 KOG0161|consensus 98.1 0.0027 5.9E-08 74.3 30.2 78 7-84 905-985 (1930)
27 KOG0161|consensus 98.1 0.0029 6.4E-08 74.0 29.9 81 141-221 1061-1141(1930)
28 PRK03918 chromosome segregatio 98.1 0.004 8.6E-08 70.7 30.8 22 11-32 460-481 (880)
29 COG1340 Uncharacterized archae 98.1 0.0095 2.1E-07 55.9 28.8 91 129-219 159-249 (294)
30 PRK11637 AmiB activator; Provi 98.1 0.009 2E-07 61.4 29.7 44 57-100 83-126 (428)
31 PF06470 SMC_hinge: SMC protei 98.1 3.6E-06 7.7E-11 70.1 3.9 104 319-427 2-119 (120)
32 KOG0979|consensus 98.1 0.009 1.9E-07 64.4 29.4 165 57-223 182-357 (1072)
33 PHA02562 46 endonuclease subun 98.0 0.005 1.1E-07 66.0 27.7 62 163-224 337-398 (562)
34 PRK04778 septation ring format 98.0 0.012 2.5E-07 62.8 29.8 14 42-55 170-183 (569)
35 PRK03918 chromosome segregatio 98.0 0.0085 1.8E-07 68.0 30.6 17 7-23 463-479 (880)
36 PHA02562 46 endonuclease subun 98.0 0.005 1.1E-07 66.0 26.9 70 151-220 332-401 (562)
37 PF07888 CALCOCO1: Calcium bin 97.9 0.019 4.2E-07 58.9 28.5 18 19-36 159-176 (546)
38 TIGR00606 rad50 rad50. This fa 97.9 0.011 2.4E-07 69.4 30.4 43 58-100 883-925 (1311)
39 PF06160 EzrA: Septation ring 97.8 0.032 6.8E-07 59.3 29.7 12 42-53 166-177 (560)
40 PF07888 CALCOCO1: Calcium bin 97.8 0.038 8.2E-07 56.8 28.3 16 21-36 154-169 (546)
41 PRK11637 AmiB activator; Provi 97.8 0.038 8.2E-07 56.9 28.9 41 55-95 88-128 (428)
42 KOG0977|consensus 97.8 0.017 3.7E-07 59.2 24.8 145 3-155 42-189 (546)
43 TIGR00606 rad50 rad50. This fa 97.8 0.024 5.2E-07 66.8 29.5 24 167-190 988-1011(1311)
44 PF10174 Cast: RIM-binding pro 97.7 0.1 2.3E-06 56.6 31.2 102 127-228 300-401 (775)
45 PF00038 Filament: Intermediat 97.7 0.068 1.5E-06 52.6 32.2 34 3-36 4-37 (312)
46 KOG1029|consensus 97.6 0.064 1.4E-06 56.2 26.2 39 127-165 478-516 (1118)
47 PF00038 Filament: Intermediat 97.6 0.086 1.9E-06 51.8 30.2 14 23-36 53-66 (312)
48 COG1340 Uncharacterized archae 97.6 0.066 1.4E-06 50.5 29.7 81 144-224 167-247 (294)
49 KOG0994|consensus 97.6 0.1 2.2E-06 57.2 27.8 38 3-40 1511-1548(1758)
50 PF05701 WEMBL: Weak chloropla 97.5 0.15 3.2E-06 53.8 28.9 32 5-36 160-191 (522)
51 PF10174 Cast: RIM-binding pro 97.5 0.14 3E-06 55.7 28.4 31 6-36 227-257 (775)
52 PF09726 Macoilin: Transmembra 97.5 0.077 1.7E-06 57.3 26.4 35 140-174 543-577 (697)
53 PRK04778 septation ring format 97.5 0.024 5.1E-07 60.5 22.5 25 117-143 315-339 (569)
54 COG1579 Zn-ribbon protein, pos 97.4 0.046 1E-06 50.2 20.6 30 154-183 94-123 (239)
55 PF12718 Tropomyosin_1: Tropom 97.4 0.031 6.7E-07 47.6 18.3 13 156-168 80-92 (143)
56 KOG0971|consensus 97.4 0.18 4E-06 53.9 26.9 8 259-266 577-584 (1243)
57 PRK01156 chromosome segregatio 97.4 0.22 4.8E-06 56.6 30.6 7 436-442 865-871 (895)
58 KOG0971|consensus 97.4 0.28 6E-06 52.6 30.6 13 282-294 712-724 (1243)
59 PF12128 DUF3584: Protein of u 97.3 0.17 3.6E-06 59.2 28.8 36 65-100 354-389 (1201)
60 PF09726 Macoilin: Transmembra 97.3 0.27 5.8E-06 53.3 27.5 18 21-38 422-439 (697)
61 PF05701 WEMBL: Weak chloropla 97.3 0.33 7.1E-06 51.2 30.4 6 44-49 179-184 (522)
62 KOG4674|consensus 97.3 0.52 1.1E-05 55.3 30.6 52 92-147 1244-1297(1822)
63 COG4942 Membrane-bound metallo 97.3 0.25 5.4E-06 49.2 27.5 72 17-93 38-110 (420)
64 TIGR02680 conserved hypothetic 97.2 0.74 1.6E-05 54.4 41.2 29 324-352 606-639 (1353)
65 PF05667 DUF812: Protein of un 97.2 0.27 5.8E-06 52.2 26.3 104 117-222 424-529 (594)
66 PF06160 EzrA: Septation ring 97.2 0.41 8.9E-06 51.0 30.1 10 259-268 531-540 (560)
67 PF15619 Lebercilin: Ciliary p 97.2 0.17 3.7E-06 45.4 20.9 92 4-103 13-108 (194)
68 COG4477 EzrA Negative regulato 97.1 0.37 8E-06 48.9 25.6 44 181-224 379-422 (570)
69 KOG0977|consensus 97.0 0.17 3.7E-06 52.1 21.1 21 64-84 57-77 (546)
70 KOG0980|consensus 96.9 0.77 1.7E-05 49.4 26.6 15 68-82 422-436 (980)
71 KOG0995|consensus 96.8 0.75 1.6E-05 47.2 29.3 48 54-101 278-325 (581)
72 PF15070 GOLGA2L5: Putative go 96.8 1 2.2E-05 48.1 27.0 35 19-53 31-66 (617)
73 KOG4643|consensus 96.7 1.3 2.7E-05 48.5 26.2 89 131-219 470-558 (1195)
74 KOG0612|consensus 96.7 1.4 3.1E-05 49.2 29.3 37 53-89 491-527 (1317)
75 KOG0980|consensus 96.7 1.2 2.5E-05 48.1 27.8 13 22-34 363-375 (980)
76 PRK09039 hypothetical protein; 96.7 0.49 1.1E-05 46.9 21.2 7 285-291 246-252 (343)
77 KOG0994|consensus 96.6 1.6 3.5E-05 48.4 27.8 23 203-225 1715-1737(1758)
78 COG4372 Uncharacterized protei 96.6 0.78 1.7E-05 44.5 28.7 28 9-36 66-93 (499)
79 COG4372 Uncharacterized protei 96.6 0.82 1.8E-05 44.3 29.5 28 65-92 132-159 (499)
80 KOG0976|consensus 96.4 1.7 3.6E-05 46.3 25.7 39 60-98 267-305 (1265)
81 KOG0946|consensus 96.4 1.2 2.7E-05 47.5 22.6 30 67-96 682-711 (970)
82 COG4942 Membrane-bound metallo 96.4 1.3 2.8E-05 44.3 26.8 28 61-88 64-91 (420)
83 KOG0995|consensus 96.3 1.7 3.6E-05 44.8 27.8 18 22-39 264-281 (581)
84 KOG1003|consensus 96.3 0.7 1.5E-05 40.5 24.5 15 22-36 9-23 (205)
85 PF15070 GOLGA2L5: Putative go 96.3 2.1 4.5E-05 45.8 28.3 28 5-32 38-65 (617)
86 TIGR03185 DNA_S_dndD DNA sulfu 96.2 2.4 5.3E-05 46.3 30.4 25 58-82 264-288 (650)
87 KOG4674|consensus 96.2 3.9 8.4E-05 48.5 30.3 76 127-202 390-465 (1822)
88 PF04111 APG6: Autophagy prote 96.2 0.07 1.5E-06 52.1 12.2 123 146-269 47-176 (314)
89 KOG1003|consensus 96.0 1 2.2E-05 39.6 24.0 94 128-221 88-181 (205)
90 KOG0612|consensus 95.9 4 8.6E-05 45.9 26.1 28 148-175 622-649 (1317)
91 KOG0978|consensus 95.9 3.1 6.7E-05 44.5 24.7 91 133-223 529-619 (698)
92 COG5185 HEC1 Protein involved 95.9 2.1 4.5E-05 42.8 20.0 27 57-83 265-291 (622)
93 KOG4673|consensus 95.8 3 6.5E-05 43.7 25.7 22 202-223 577-598 (961)
94 PF08317 Spc7: Spc7 kinetochor 95.8 2.2 4.8E-05 42.1 24.9 34 63-96 142-175 (325)
95 PF05276 SH3BP5: SH3 domain-bi 95.8 1.7 3.6E-05 40.4 26.7 76 6-81 3-88 (239)
96 PF08317 Spc7: Spc7 kinetochor 95.7 2.4 5.2E-05 41.8 27.9 16 153-168 213-228 (325)
97 PF04849 HAP1_N: HAP1 N-termin 95.6 2.2 4.8E-05 40.8 21.5 26 23-48 96-122 (306)
98 KOG4643|consensus 95.6 4.8 0.0001 44.3 26.8 30 127-156 529-558 (1195)
99 COG3883 Uncharacterized protei 95.5 2.1 4.6E-05 40.0 26.8 37 58-94 61-97 (265)
100 KOG0946|consensus 95.5 2.8 6.2E-05 44.9 20.7 26 6-31 653-678 (970)
101 smart00787 Spc7 Spc7 kinetocho 95.4 2.9 6.4E-05 40.7 26.1 33 63-95 137-169 (312)
102 KOG4673|consensus 95.2 5 0.00011 42.2 27.2 28 24-51 409-437 (961)
103 KOG4360|consensus 95.0 3.6 7.7E-05 41.7 18.7 35 17-51 90-125 (596)
104 KOG0999|consensus 94.9 5.2 0.00011 40.9 24.3 29 75-103 105-133 (772)
105 PF05911 DUF869: Plant protein 94.9 7.6 0.00016 42.6 24.6 44 477-520 597-640 (769)
106 COG4477 EzrA Negative regulato 94.8 5.4 0.00012 40.9 26.8 33 187-219 378-410 (570)
107 PF10168 Nup88: Nuclear pore c 94.6 8 0.00017 42.4 22.1 45 57-101 573-617 (717)
108 PF09728 Taxilin: Myosin-like 94.6 4.8 0.0001 39.2 29.5 16 21-36 54-69 (309)
109 TIGR03007 pepcterm_ChnLen poly 94.6 5 0.00011 42.3 20.4 6 119-124 254-259 (498)
110 PF14662 CCDC155: Coiled-coil 94.5 3.1 6.7E-05 36.7 24.1 15 22-36 20-34 (193)
111 TIGR00634 recN DNA repair prot 94.4 8.6 0.00019 41.2 22.6 30 55-84 167-196 (563)
112 TIGR00634 recN DNA repair prot 94.4 8.6 0.00019 41.2 21.8 23 62-84 181-203 (563)
113 PF10481 CENP-F_N: Cenp-F N-te 94.2 4.6 0.0001 37.5 17.2 18 478-495 280-297 (307)
114 KOG0962|consensus 94.2 13 0.00029 42.7 28.0 39 184-222 1041-1079(1294)
115 PF04111 APG6: Autophagy prote 94.1 1.3 2.8E-05 43.4 13.4 78 149-226 43-120 (314)
116 PF08614 ATG16: Autophagy prot 94.0 1.2 2.5E-05 40.4 12.3 19 197-215 150-168 (194)
117 COG5185 HEC1 Protein involved 93.8 8.1 0.00017 38.8 25.4 84 17-100 271-360 (622)
118 PF14915 CCDC144C: CCDC144C pr 93.8 6.3 0.00014 37.3 28.0 47 57-103 57-103 (305)
119 TIGR01843 type_I_hlyD type I s 93.6 9.6 0.00021 39.0 24.0 7 246-252 278-284 (423)
120 KOG0243|consensus 93.6 8.1 0.00018 43.2 19.4 12 70-81 411-422 (1041)
121 KOG0249|consensus 93.5 6.5 0.00014 41.6 17.6 19 61-79 110-128 (916)
122 PF06818 Fez1: Fez1; InterPro 93.4 2.9 6.2E-05 37.4 13.1 97 127-223 9-105 (202)
123 smart00787 Spc7 Spc7 kinetocho 93.2 8.8 0.00019 37.4 26.0 8 208-215 249-256 (312)
124 PF01576 Myosin_tail_1: Myosin 93.2 0.026 5.6E-07 63.0 0.0 39 182-220 466-504 (859)
125 PF05622 HOOK: HOOK protein; 93.1 0.026 5.7E-07 62.0 0.0 38 63-100 246-283 (713)
126 PRK11281 hypothetical protein; 92.8 23 0.00049 41.0 25.2 68 18-85 74-150 (1113)
127 PRK10929 putative mechanosensi 92.8 23 0.00049 40.9 27.6 27 195-221 283-309 (1109)
128 KOG0978|consensus 92.7 17 0.00036 39.2 30.5 98 127-224 502-606 (698)
129 PF10146 zf-C4H2: Zinc finger- 92.6 7.7 0.00017 35.9 15.3 64 154-217 37-100 (230)
130 PRK11281 hypothetical protein; 92.5 25 0.00053 40.7 29.1 18 204-221 312-329 (1113)
131 KOG4360|consensus 91.9 14 0.0003 37.7 16.8 15 54-68 109-123 (596)
132 PF09789 DUF2353: Uncharacteri 91.8 13 0.00029 36.0 23.1 15 20-34 12-26 (319)
133 PF12325 TMF_TATA_bd: TATA ele 91.4 7 0.00015 32.1 13.9 10 206-215 97-106 (120)
134 PF13851 GAS: Growth-arrest sp 91.4 11 0.00024 34.2 22.3 76 141-216 92-168 (201)
135 PF12777 MT: Microtubule-bindi 91.4 17 0.00036 36.3 22.7 74 148-221 220-293 (344)
136 PRK10869 recombination and rep 91.3 23 0.00049 37.8 21.8 29 55-83 163-191 (553)
137 PF13514 AAA_27: AAA domain 91.2 36 0.00079 39.9 27.8 32 71-102 802-833 (1111)
138 COG2433 Uncharacterized conser 91.2 22 0.00047 37.3 20.5 10 272-281 546-555 (652)
139 PRK10884 SH3 domain-containing 90.9 6 0.00013 35.9 12.4 27 196-222 137-163 (206)
140 COG0419 SbcC ATPase involved i 90.7 36 0.00078 39.0 33.4 6 255-260 466-471 (908)
141 PF10186 Atg14: UV radiation r 90.7 15 0.00034 35.5 16.5 8 262-269 195-202 (302)
142 PRK10884 SH3 domain-containing 90.5 6.8 0.00015 35.6 12.5 39 182-220 130-168 (206)
143 KOG1937|consensus 90.3 21 0.00047 35.8 24.3 35 183-217 388-422 (521)
144 KOG0999|consensus 90.3 24 0.00052 36.4 28.2 20 60-79 54-73 (772)
145 PF10498 IFT57: Intra-flagella 90.2 21 0.00046 35.5 17.4 9 41-49 195-203 (359)
146 PF11932 DUF3450: Protein of u 90.1 8.1 0.00018 36.5 13.3 7 294-300 189-195 (251)
147 PF09730 BicD: Microtubule-ass 89.7 34 0.00074 37.3 29.0 10 258-267 359-368 (717)
148 KOG0962|consensus 89.0 51 0.0011 38.2 25.3 27 63-89 230-256 (1294)
149 PF05622 HOOK: HOOK protein; 88.9 0.12 2.6E-06 56.8 0.0 38 66-103 242-279 (713)
150 PRK12704 phosphodiesterase; Pr 88.8 34 0.00075 36.1 22.9 9 261-269 233-241 (520)
151 COG0497 RecN ATPase involved i 88.5 36 0.00077 35.9 18.7 23 12-34 159-181 (557)
152 KOG2751|consensus 88.4 21 0.00045 35.7 14.7 62 160-221 194-255 (447)
153 PF13851 GAS: Growth-arrest sp 88.4 19 0.00042 32.6 23.8 71 152-222 89-167 (201)
154 COG4026 Uncharacterized protei 88.1 8.7 0.00019 34.5 10.8 43 163-205 142-184 (290)
155 PF09789 DUF2353: Uncharacteri 87.9 28 0.0006 33.9 25.3 19 203-221 201-219 (319)
156 PF15290 Syntaphilin: Golgi-lo 87.9 19 0.00042 33.7 13.2 36 64-99 69-104 (305)
157 PRK10929 putative mechanosensi 87.8 60 0.0013 37.6 27.3 28 21-48 62-90 (1109)
158 PF09728 Taxilin: Myosin-like 87.7 29 0.00063 33.9 28.8 14 81-94 139-152 (309)
159 KOG0249|consensus 87.7 43 0.00093 35.9 17.0 6 29-34 33-38 (916)
160 KOG0288|consensus 87.6 32 0.00069 34.2 16.2 14 256-269 163-176 (459)
161 COG2433 Uncharacterized conser 87.6 16 0.00034 38.3 13.7 6 294-299 544-549 (652)
162 COG4913 Uncharacterized protei 87.0 48 0.001 35.7 34.6 26 250-275 470-498 (1104)
163 PF11802 CENP-K: Centromere-as 86.8 24 0.00052 33.2 13.4 42 55-96 29-71 (268)
164 COG4026 Uncharacterized protei 86.8 9.9 0.00021 34.2 10.3 69 152-220 138-206 (290)
165 PF05483 SCP-1: Synaptonemal c 86.7 48 0.001 35.4 29.8 23 483-505 746-768 (786)
166 PRK10869 recombination and rep 86.6 49 0.0011 35.4 21.8 17 68-84 183-199 (553)
167 PF13514 AAA_27: AAA domain 86.3 76 0.0016 37.3 29.3 16 68-83 748-763 (1111)
168 PF10234 Cluap1: Clusterin-ass 86.3 30 0.00066 32.7 14.9 25 38-62 58-82 (267)
169 PF12795 MscS_porin: Mechanose 86.3 29 0.00063 32.5 21.3 17 205-221 192-208 (240)
170 PF11559 ADIP: Afadin- and alp 86.2 21 0.00045 30.7 14.7 51 152-202 62-112 (151)
171 PF06785 UPF0242: Uncharacteri 86.2 33 0.00072 33.0 16.1 16 281-296 284-299 (401)
172 PF12795 MscS_porin: Mechanose 86.1 30 0.00065 32.4 23.1 10 85-94 53-62 (240)
173 KOG0804|consensus 85.9 42 0.0009 33.9 15.6 12 206-217 436-447 (493)
174 TIGR03319 YmdA_YtgF conserved 85.8 51 0.0011 34.8 22.5 30 261-290 227-268 (514)
175 KOG1899|consensus 85.7 42 0.0009 35.3 15.5 27 58-84 134-160 (861)
176 PRK03947 prefoldin subunit alp 85.5 21 0.00046 30.2 13.8 22 195-216 105-126 (140)
177 PF04582 Reo_sigmaC: Reovirus 85.5 1.8 4E-05 41.7 5.7 81 144-224 72-152 (326)
178 PF05557 MAD: Mitotic checkpoi 85.3 6.3 0.00014 43.6 10.8 14 259-272 635-649 (722)
179 PF05483 SCP-1: Synaptonemal c 85.1 58 0.0013 34.8 29.4 27 8-34 181-207 (786)
180 PF00769 ERM: Ezrin/radixin/mo 84.9 35 0.00075 32.1 15.4 30 185-214 83-112 (246)
181 PF12777 MT: Microtubule-bindi 84.9 44 0.00095 33.3 21.7 53 163-215 228-280 (344)
182 PF04582 Reo_sigmaC: Reovirus 83.4 2.5 5.4E-05 40.8 5.6 105 127-231 48-152 (326)
183 KOG0804|consensus 83.3 54 0.0012 33.1 14.8 9 213-221 436-444 (493)
184 KOG1853|consensus 82.3 41 0.00089 31.0 18.9 9 441-449 297-305 (333)
185 KOG2991|consensus 81.8 44 0.00095 30.9 18.7 73 148-220 235-307 (330)
186 TIGR03017 EpsF chain length de 81.6 69 0.0015 33.1 21.1 21 73-93 174-194 (444)
187 KOG4302|consensus 81.5 83 0.0018 34.0 16.8 37 130-166 105-141 (660)
188 COG3096 MukB Uncharacterized p 80.8 88 0.0019 33.8 28.2 49 127-175 997-1045(1480)
189 PRK12704 phosphodiesterase; Pr 80.7 81 0.0018 33.4 16.2 11 243-253 221-232 (520)
190 PF05557 MAD: Mitotic checkpoi 80.6 1.7 3.6E-05 48.1 4.0 15 334-348 634-648 (722)
191 KOG4809|consensus 80.5 76 0.0017 32.9 24.1 33 57-89 353-385 (654)
192 TIGR01000 bacteriocin_acc bact 80.2 79 0.0017 32.9 20.9 15 156-170 243-257 (457)
193 PF06785 UPF0242: Uncharacteri 79.9 60 0.0013 31.4 15.9 8 276-283 257-264 (401)
194 PF04012 PspA_IM30: PspA/IM30 79.7 50 0.0011 30.4 17.7 11 207-217 121-131 (221)
195 PRK09841 cryptic autophosphory 79.6 1.1E+02 0.0023 34.1 20.5 32 65-96 262-293 (726)
196 KOG1899|consensus 79.2 90 0.002 33.0 19.1 26 26-51 127-153 (861)
197 PF09755 DUF2046: Uncharacteri 79.2 63 0.0014 31.2 23.5 8 192-199 157-164 (310)
198 PF05276 SH3BP5: SH3 domain-bi 78.7 57 0.0012 30.4 23.7 29 57-85 78-106 (239)
199 PRK11519 tyrosine kinase; Prov 77.6 1.2E+02 0.0026 33.6 18.5 25 70-94 267-291 (719)
200 TIGR03319 YmdA_YtgF conserved 77.6 1E+02 0.0022 32.6 16.2 6 263-268 263-268 (514)
201 KOG1853|consensus 77.5 60 0.0013 30.0 20.9 12 210-221 169-180 (333)
202 PRK03947 prefoldin subunit alp 76.9 44 0.00096 28.2 14.0 40 178-217 95-134 (140)
203 PF05266 DUF724: Protein of un 76.3 58 0.0013 29.2 13.4 13 200-212 161-173 (190)
204 COG0497 RecN ATPase involved i 76.3 1.1E+02 0.0024 32.4 21.1 9 347-355 456-464 (557)
205 PF11932 DUF3450: Protein of u 76.2 71 0.0015 30.1 15.1 7 258-264 149-155 (251)
206 KOG2264|consensus 76.0 27 0.00059 36.1 10.3 48 173-220 103-150 (907)
207 PRK09343 prefoldin subunit bet 75.8 44 0.00094 27.5 11.1 36 66-101 74-109 (121)
208 PF02994 Transposase_22: L1 tr 74.2 11 0.00024 37.9 7.3 10 347-356 282-291 (370)
209 KOG1937|consensus 73.9 1.1E+02 0.0023 31.1 19.7 40 176-215 388-427 (521)
210 PF05377 FlaC_arch: Flagella a 73.6 16 0.00035 25.1 5.7 34 480-513 4-37 (55)
211 TIGR02338 gimC_beta prefoldin, 73.4 47 0.001 26.8 13.0 34 182-215 72-105 (110)
212 PF10212 TTKRSYEDQ: Predicted 72.8 1.3E+02 0.0027 31.5 19.6 17 8-24 307-323 (518)
213 KOG2264|consensus 72.5 39 0.00085 35.0 10.5 52 172-223 95-146 (907)
214 PRK00106 hypothetical protein; 72.4 1.4E+02 0.003 31.7 23.9 30 261-290 248-289 (535)
215 PF13166 AAA_13: AAA domain 72.1 1.6E+02 0.0036 32.5 27.2 29 185-213 425-453 (712)
216 KOG4403|consensus 71.2 1.2E+02 0.0026 30.5 19.4 45 54-99 230-274 (575)
217 PRK00106 hypothetical protein; 71.1 1.5E+02 0.0032 31.5 16.2 6 263-268 284-289 (535)
218 KOG2751|consensus 71.0 93 0.002 31.4 12.4 19 250-269 291-309 (447)
219 PF14073 Cep57_CLD: Centrosome 70.8 74 0.0016 28.0 20.8 33 117-151 62-94 (178)
220 PHA01750 hypothetical protein 70.7 35 0.00075 24.2 6.8 48 37-84 23-70 (75)
221 KOG3647|consensus 70.4 95 0.002 29.0 13.7 98 123-222 102-199 (338)
222 TIGR02231 conserved hypothetic 69.7 63 0.0014 34.3 12.2 42 182-223 129-170 (525)
223 TIGR02231 conserved hypothetic 68.5 96 0.0021 32.9 13.3 43 175-217 129-171 (525)
224 KOG0982|consensus 68.5 1.4E+02 0.003 30.1 22.8 16 17-32 222-237 (502)
225 PF02994 Transposase_22: L1 tr 68.4 19 0.0004 36.3 7.5 42 177-218 144-185 (370)
226 TIGR03017 EpsF chain length de 65.7 1.7E+02 0.0037 30.2 23.8 22 63-84 178-199 (444)
227 KOG2129|consensus 65.7 1.5E+02 0.0033 29.7 20.7 18 22-39 112-129 (552)
228 KOG2991|consensus 65.7 1.2E+02 0.0025 28.3 20.8 42 180-221 253-294 (330)
229 PF15397 DUF4618: Domain of un 65.5 1.2E+02 0.0027 28.5 19.6 22 150-171 194-215 (258)
230 KOG0239|consensus 65.5 2.1E+02 0.0046 31.3 17.9 6 213-218 308-313 (670)
231 PF14282 FlxA: FlxA-like prote 65.2 35 0.00077 27.3 7.1 51 476-526 19-73 (106)
232 PF10267 Tmemb_cc2: Predicted 64.8 1.6E+02 0.0036 29.7 14.9 21 64-84 63-83 (395)
233 PLN02939 transferase, transfer 63.7 2.7E+02 0.0059 31.8 24.7 35 2-36 141-175 (977)
234 KOG0982|consensus 63.6 1.7E+02 0.0037 29.5 24.2 13 23-35 221-233 (502)
235 PF07851 TMPIT: TMPIT-like pro 63.4 81 0.0017 30.9 10.3 6 256-261 119-124 (330)
236 PRK09841 cryptic autophosphory 63.2 1.4E+02 0.003 33.3 13.7 12 364-375 559-570 (726)
237 PF06810 Phage_GP20: Phage min 63.0 1E+02 0.0022 26.7 10.0 31 262-293 100-132 (155)
238 PF04728 LPP: Lipoprotein leuc 62.8 49 0.0011 23.0 7.7 47 476-522 3-49 (56)
239 TIGR03752 conj_TIGR03752 integ 62.1 1.3E+02 0.0029 30.9 11.9 13 392-404 345-359 (472)
240 PRK11519 tyrosine kinase; Prov 61.9 1.9E+02 0.0042 32.1 14.5 11 365-375 555-565 (719)
241 COG3096 MukB Uncharacterized p 61.3 2.5E+02 0.0054 30.6 25.6 35 5-39 787-821 (1480)
242 KOG1850|consensus 60.7 1.6E+02 0.0035 28.3 25.5 32 137-168 224-255 (391)
243 PRK09343 prefoldin subunit bet 59.8 98 0.0021 25.5 13.9 24 196-219 83-106 (121)
244 cd00632 Prefoldin_beta Prefold 59.8 87 0.0019 24.9 12.2 28 193-220 72-99 (105)
245 COG1730 GIM5 Predicted prefold 59.3 1.1E+02 0.0024 26.0 14.4 32 181-212 98-129 (145)
246 TIGR03752 conj_TIGR03752 integ 59.3 1.5E+02 0.0033 30.5 11.8 14 206-219 124-137 (472)
247 COG1842 PspA Phage shock prote 59.2 1.5E+02 0.0033 27.4 19.4 37 177-213 99-135 (225)
248 PF01920 Prefoldin_2: Prefoldi 58.9 87 0.0019 24.6 12.8 32 189-220 67-98 (106)
249 PF15456 Uds1: Up-regulated Du 58.9 1E+02 0.0022 25.5 12.0 7 149-155 36-42 (124)
250 PRK10803 tol-pal system protei 58.6 83 0.0018 29.9 9.6 21 338-358 180-201 (263)
251 PRK00736 hypothetical protein; 58.5 69 0.0015 23.3 7.5 49 476-524 5-53 (68)
252 PF05278 PEARLI-4: Arabidopsis 58.3 1.7E+02 0.0037 27.7 14.8 57 151-207 202-258 (269)
253 PF15397 DUF4618: Domain of un 57.9 1.7E+02 0.0037 27.6 27.3 26 78-103 82-107 (258)
254 PF13863 DUF4200: Domain of un 56.7 1.1E+02 0.0024 25.1 15.5 28 196-223 79-106 (126)
255 PF12761 End3: Actin cytoskele 56.6 1.3E+02 0.0028 27.0 9.6 27 148-174 166-192 (195)
256 KOG2008|consensus 55.9 1.9E+02 0.0042 27.7 24.5 31 9-39 12-43 (426)
257 PF05377 FlaC_arch: Flagella a 54.9 68 0.0015 22.2 7.0 37 485-521 2-38 (55)
258 TIGR01010 BexC_CtrB_KpsE polys 53.9 2.4E+02 0.0052 28.2 17.4 8 262-269 336-343 (362)
259 PF04949 Transcrip_act: Transc 53.8 1.4E+02 0.003 25.3 16.2 7 180-186 129-135 (159)
260 KOG2010|consensus 53.8 1.8E+02 0.004 28.1 10.5 8 249-256 226-233 (405)
261 PF13874 Nup54: Nucleoporin co 53.7 1.2E+02 0.0026 25.7 8.8 6 248-253 131-136 (141)
262 KOG3091|consensus 53.4 2.1E+02 0.0045 29.6 11.5 110 105-222 336-445 (508)
263 PRK13729 conjugal transfer pil 53.3 42 0.00092 34.4 6.8 45 477-521 77-121 (475)
264 PRK13729 conjugal transfer pil 52.4 62 0.0013 33.3 7.8 8 436-443 315-322 (475)
265 KOG1103|consensus 51.8 2.4E+02 0.0052 27.5 20.0 13 419-431 500-512 (561)
266 TIGR03495 phage_LysB phage lys 51.6 1.5E+02 0.0032 25.0 11.2 11 207-217 77-87 (135)
267 PF10205 KLRAQ: Predicted coil 51.5 1.2E+02 0.0026 24.0 11.0 25 191-215 47-71 (102)
268 PF00170 bZIP_1: bZIP transcri 50.9 84 0.0018 22.3 6.4 36 483-518 26-61 (64)
269 PF14992 TMCO5: TMCO5 family 50.5 2.3E+02 0.0051 27.0 17.5 21 82-102 23-43 (280)
270 PF04912 Dynamitin: Dynamitin 49.8 2.9E+02 0.0064 28.0 17.9 17 37-53 209-225 (388)
271 PF14915 CCDC144C: CCDC144C pr 49.0 2.5E+02 0.0055 27.0 30.0 31 57-87 64-94 (305)
272 PRK10803 tol-pal system protei 48.6 1.4E+02 0.003 28.4 9.3 7 260-266 146-152 (263)
273 PF06120 Phage_HK97_TLTM: Tail 48.5 2.7E+02 0.0058 27.1 19.2 40 57-96 68-107 (301)
274 COG5283 Phage-related tail pro 48.0 5.1E+02 0.011 30.2 21.0 17 478-494 519-535 (1213)
275 KOG0288|consensus 47.6 3.1E+02 0.0068 27.6 15.0 9 438-446 396-404 (459)
276 smart00338 BRLZ basic region l 47.2 87 0.0019 22.3 6.0 35 484-518 27-61 (65)
277 TIGR03495 phage_LysB phage lys 47.1 1.7E+02 0.0038 24.5 11.2 23 193-215 70-92 (135)
278 PF05529 Bap31: B-cell recepto 46.8 2.1E+02 0.0046 25.6 9.9 8 188-195 165-172 (192)
279 PRK13182 racA polar chromosome 46.2 1.5E+02 0.0033 26.2 8.5 58 27-84 88-146 (175)
280 PF08172 CASP_C: CASP C termin 45.8 2.6E+02 0.0057 26.3 13.1 43 180-222 82-124 (248)
281 COG0216 PrfA Protein chain rel 45.6 1.5E+02 0.0032 29.1 8.7 19 85-103 84-102 (363)
282 PHA03011 hypothetical protein; 45.0 1.5E+02 0.0032 23.1 7.3 52 22-78 62-114 (120)
283 KOG3564|consensus 44.9 3.4E+02 0.0074 28.0 11.3 53 137-189 30-82 (604)
284 PF07111 HCR: Alpha helical co 44.9 4.5E+02 0.0097 28.6 29.8 10 479-488 702-711 (739)
285 PF12252 SidE: Dot/Icm substra 44.8 5.4E+02 0.012 29.6 23.5 85 15-99 1129-1222(1439)
286 KOG0972|consensus 44.4 2.9E+02 0.0063 26.4 15.3 19 196-214 340-358 (384)
287 PF11180 DUF2968: Protein of u 44.4 2.3E+02 0.0051 25.3 15.4 54 169-222 125-178 (192)
288 PF03961 DUF342: Protein of un 44.3 2E+02 0.0043 29.9 10.5 21 199-219 383-403 (451)
289 KOG3433|consensus 44.0 2.3E+02 0.0049 25.0 12.5 8 133-140 86-93 (203)
290 PF06156 DUF972: Protein of un 43.6 1.6E+02 0.0034 23.7 7.4 49 476-524 8-56 (107)
291 KOG4809|consensus 43.3 4.2E+02 0.009 27.9 23.3 21 16-36 330-350 (654)
292 PF01920 Prefoldin_2: Prefoldi 42.9 1.6E+02 0.0035 23.0 12.9 26 187-212 72-97 (106)
293 KOG3809|consensus 42.6 3.8E+02 0.0082 27.2 11.3 34 70-103 479-512 (583)
294 TIGR00293 prefoldin, archaeal 42.6 1.9E+02 0.0041 23.7 10.6 20 194-213 96-115 (126)
295 smart00338 BRLZ basic region l 41.5 1.1E+02 0.0024 21.8 5.8 38 476-513 26-63 (65)
296 PF04912 Dynamitin: Dynamitin 41.3 4E+02 0.0086 27.0 18.1 21 68-88 207-227 (388)
297 PF15294 Leu_zip: Leucine zipp 41.2 3.3E+02 0.0071 26.1 16.2 15 68-82 137-151 (278)
298 TIGR01069 mutS2 MutS2 family p 41.2 5.6E+02 0.012 28.8 14.3 6 249-254 626-631 (771)
299 PF03961 DUF342: Protein of un 41.2 1.8E+02 0.004 30.1 9.7 24 192-215 383-406 (451)
300 PF15188 CCDC-167: Coiled-coil 40.6 1.6E+02 0.0036 22.4 6.9 9 152-160 15-23 (85)
301 PHA03011 hypothetical protein; 40.4 1.8E+02 0.0038 22.7 6.9 55 476-530 64-118 (120)
302 PRK14011 prefoldin subunit alp 39.9 2.4E+02 0.0052 24.1 14.5 10 147-156 22-31 (144)
303 KOG0972|consensus 39.8 3.4E+02 0.0075 25.9 13.0 6 152-157 251-256 (384)
304 COG1730 GIM5 Predicted prefold 39.7 2.4E+02 0.0052 24.1 14.3 39 184-222 94-132 (145)
305 PF00957 Synaptobrevin: Synapt 39.3 1.7E+02 0.0037 22.3 7.3 57 2-58 9-66 (89)
306 PF10267 Tmemb_cc2: Predicted 38.4 4.4E+02 0.0096 26.7 14.9 28 52-79 58-85 (395)
307 PF11180 DUF2968: Protein of u 38.1 2.9E+02 0.0064 24.6 15.0 70 152-221 115-184 (192)
308 PF04977 DivIC: Septum formati 38.0 1.2E+02 0.0026 22.3 5.9 34 476-509 17-50 (80)
309 PRK10636 putative ABC transpor 37.8 2.3E+02 0.0051 30.9 10.2 29 193-221 600-628 (638)
310 cd00890 Prefoldin Prefoldin is 37.2 2.3E+02 0.005 23.1 10.6 102 65-168 1-127 (129)
311 PF10212 TTKRSYEDQ: Predicted 36.8 5.2E+02 0.011 27.1 22.6 18 57-74 310-327 (518)
312 PF15450 DUF4631: Domain of un 36.5 5.2E+02 0.011 27.0 25.2 20 15-34 263-282 (531)
313 COG4717 Uncharacterized conser 36.1 6.7E+02 0.015 28.2 28.6 23 14-36 561-583 (984)
314 PF07303 Occludin_ELL: Occludi 36.1 2.2E+02 0.0048 22.6 8.3 76 4-81 23-98 (101)
315 PF10205 KLRAQ: Predicted coil 36.1 2.2E+02 0.0048 22.6 10.7 59 134-192 11-69 (102)
316 KOG4572|consensus 35.4 6.6E+02 0.014 27.9 23.8 18 205-222 1092-1109(1424)
317 PF06009 Laminin_II: Laminin D 32.6 15 0.00032 31.1 0.0 12 210-221 88-99 (138)
318 PF05008 V-SNARE: Vesicle tran 32.6 2E+02 0.0044 21.2 8.2 17 152-168 28-44 (79)
319 PLN03229 acetyl-coenzyme A car 32.6 7.2E+02 0.016 27.5 23.1 30 23-52 461-494 (762)
320 PF15254 CCDC14: Coiled-coil d 32.5 7.2E+02 0.016 27.5 23.4 7 285-291 595-601 (861)
321 COG5283 Phage-related tail pro 32.5 8.7E+02 0.019 28.4 20.1 95 65-163 45-141 (1213)
322 PRK13169 DNA replication intia 32.0 2.7E+02 0.0059 22.4 7.4 48 476-523 8-55 (110)
323 PF09766 FimP: Fms-interacting 31.8 5.3E+02 0.012 25.8 14.4 12 92-103 41-52 (355)
324 PLN02678 seryl-tRNA synthetase 31.4 4.5E+02 0.0097 27.3 10.4 8 283-290 178-185 (448)
325 PRK00409 recombination and DNA 31.3 8E+02 0.017 27.6 15.5 8 249-256 650-657 (782)
326 PF04201 TPD52: Tumour protein 31.3 2.9E+02 0.0062 24.0 7.4 38 475-512 28-65 (162)
327 PF11471 Sugarporin_N: Maltopo 30.7 1.3E+02 0.0028 21.3 4.4 31 481-511 30-60 (60)
328 PRK11020 hypothetical protein; 30.6 2.9E+02 0.0062 22.3 8.0 62 37-98 5-67 (118)
329 PF08172 CASP_C: CASP C termin 30.3 4.7E+02 0.01 24.6 12.2 86 137-222 1-131 (248)
330 PF15294 Leu_zip: Leucine zipp 30.1 5E+02 0.011 24.9 15.9 143 61-214 130-276 (278)
331 PF05837 CENP-H: Centromere pr 29.9 2.9E+02 0.0062 22.1 10.5 83 154-237 1-83 (106)
332 PF12252 SidE: Dot/Icm substra 29.9 9.2E+02 0.02 27.9 18.7 189 38-236 1071-1292(1439)
333 PF10392 COG5: Golgi transport 29.8 3.3E+02 0.0071 22.7 13.7 91 146-236 30-124 (132)
334 PRK05431 seryl-tRNA synthetase 29.7 4.5E+02 0.0099 27.0 10.2 76 135-214 28-103 (425)
335 PF09787 Golgin_A5: Golgin sub 29.3 7.1E+02 0.015 26.4 27.4 225 1-230 114-362 (511)
336 PF05064 Nsp1_C: Nsp1-like C-t 29.2 1.6E+02 0.0034 24.0 5.5 89 143-231 16-104 (116)
337 TIGR00414 serS seryl-tRNA synt 29.0 4.4E+02 0.0095 27.1 9.9 73 119-193 30-106 (418)
338 PF05008 V-SNARE: Vesicle tran 28.9 2.4E+02 0.0052 20.8 7.7 78 137-216 1-79 (79)
339 PF01519 DUF16: Protein of unk 28.9 2.9E+02 0.0064 21.8 7.1 68 152-219 33-102 (102)
340 PRK11546 zraP zinc resistance 28.8 3.6E+02 0.0079 22.9 7.6 67 156-222 47-113 (143)
341 PF14193 DUF4315: Domain of un 28.3 2.3E+02 0.0049 21.6 5.7 35 477-511 2-36 (83)
342 PF06476 DUF1090: Protein of u 28.3 3.3E+02 0.0071 22.2 8.9 80 43-124 23-115 (115)
343 PLN02678 seryl-tRNA synthetase 28.1 5.4E+02 0.012 26.7 10.3 73 149-221 33-108 (448)
344 cd00584 Prefoldin_alpha Prefol 27.8 3.4E+02 0.0075 22.3 13.0 87 131-217 2-127 (129)
345 PF13094 CENP-Q: CENP-Q, a CEN 27.6 4E+02 0.0087 23.0 9.3 67 137-203 22-88 (160)
346 PF07989 Microtub_assoc: Micro 27.5 2.6E+02 0.0056 20.8 8.9 72 130-201 2-74 (75)
347 PF05615 THOC7: Tho complex su 27.3 3.7E+02 0.0081 22.5 14.0 96 138-234 42-138 (139)
348 TIGR00414 serS seryl-tRNA synt 27.2 5.9E+02 0.013 26.1 10.5 73 149-221 30-106 (418)
349 PRK00888 ftsB cell division pr 27.2 2.5E+02 0.0055 22.4 6.2 42 477-518 28-69 (105)
350 PRK15396 murein lipoprotein; P 27.1 2.7E+02 0.0059 20.9 7.5 53 477-529 26-78 (78)
351 cd00890 Prefoldin Prefoldin is 27.0 3.5E+02 0.0075 22.0 12.1 81 130-210 1-127 (129)
352 PF13815 Dzip-like_N: Iguana/D 27.0 2.5E+02 0.0055 22.8 6.4 43 479-521 76-118 (118)
353 PF03148 Tektin: Tektin family 27.0 6.7E+02 0.015 25.4 29.1 217 1-221 62-368 (384)
354 PF14712 Snapin_Pallidin: Snap 26.9 2.9E+02 0.0063 21.1 11.1 83 121-205 9-92 (92)
355 PF14817 HAUS5: HAUS augmin-li 26.8 8.6E+02 0.019 26.5 13.9 92 138-229 75-166 (632)
356 PF13747 DUF4164: Domain of un 26.8 3E+02 0.0065 21.2 12.2 82 136-217 5-86 (89)
357 PRK03598 putative efflux pump 26.7 6.1E+02 0.013 24.8 15.8 105 114-222 78-202 (331)
358 KOG4572|consensus 26.6 9.3E+02 0.02 26.9 17.7 172 1-181 934-1110(1424)
359 PHA01750 hypothetical protein 26.5 2.4E+02 0.0053 20.1 6.1 41 117-165 32-72 (75)
360 PF02183 HALZ: Homeobox associ 26.1 2E+02 0.0043 19.0 6.1 42 181-222 2-43 (45)
361 PF06156 DUF972: Protein of un 26.0 3.5E+02 0.0076 21.7 8.1 54 166-219 4-57 (107)
362 TIGR03794 NHPM_micro_HlyD NHPM 25.8 7.3E+02 0.016 25.3 18.7 146 73-222 92-251 (421)
363 PF04508 Pox_A_type_inc: Viral 25.8 1.3E+02 0.0028 16.7 2.9 21 477-497 2-22 (23)
364 PRK12705 hypothetical protein; 25.3 8.3E+02 0.018 25.8 24.2 191 72-278 25-236 (508)
365 PRK05431 seryl-tRNA synthetase 25.1 7E+02 0.015 25.7 10.6 73 149-221 28-103 (425)
366 PRK03598 putative efflux pump 25.1 6.6E+02 0.014 24.6 15.1 125 80-210 77-204 (331)
367 PLN02320 seryl-tRNA synthetase 24.9 4.1E+02 0.0088 28.0 8.8 71 119-196 93-163 (502)
368 PF07544 Med9: RNA polymerase 24.6 3.1E+02 0.0068 20.7 6.6 56 145-200 24-82 (83)
369 KOG0998|consensus 24.4 2.8E+02 0.0061 31.4 8.1 159 55-217 434-594 (847)
370 KOG3091|consensus 24.3 8.2E+02 0.018 25.5 17.2 170 39-222 336-508 (508)
371 PF09486 HrpB7: Bacterial type 24.3 4.7E+02 0.01 22.7 15.3 114 106-223 18-139 (158)
372 PF04880 NUDE_C: NUDE protein, 24.1 1.3E+02 0.0028 26.3 4.3 46 172-221 2-47 (166)
373 PLN02320 seryl-tRNA synthetase 24.1 6.6E+02 0.014 26.5 10.1 75 135-214 93-167 (502)
374 PRK14160 heat shock protein Gr 23.9 3.5E+02 0.0075 24.8 7.1 50 473-522 51-100 (211)
375 PF14817 HAUS5: HAUS augmin-li 23.6 9.8E+02 0.021 26.1 14.0 89 122-212 75-163 (632)
376 PF02388 FemAB: FemAB family; 23.4 5.6E+02 0.012 26.1 9.6 58 148-209 241-298 (406)
377 PRK09973 putative outer membra 23.4 3.4E+02 0.0074 20.7 7.0 47 164-210 25-71 (85)
378 PF04859 DUF641: Plant protein 22.9 3.9E+02 0.0085 22.3 6.7 52 476-527 80-131 (131)
379 KOG3990|consensus 22.9 6E+02 0.013 23.7 8.3 69 150-219 226-295 (305)
380 PF14257 DUF4349: Domain of un 22.7 4.7E+02 0.01 24.7 8.4 64 138-201 128-193 (262)
381 TIGR02971 heterocyst_DevB ABC 22.7 7.2E+02 0.016 24.2 17.9 141 68-215 53-203 (327)
382 KOG3647|consensus 22.7 6.6E+02 0.014 23.8 18.8 155 59-217 42-201 (338)
383 PF06103 DUF948: Bacterial pro 22.6 3.5E+02 0.0076 20.6 10.3 69 144-212 21-89 (90)
384 PF08581 Tup_N: Tup N-terminal 22.6 3.4E+02 0.0074 20.4 11.6 71 153-223 1-71 (79)
385 PF15035 Rootletin: Ciliary ro 22.5 5.6E+02 0.012 22.8 14.8 119 109-231 1-135 (182)
386 PRK13182 racA polar chromosome 22.3 5.4E+02 0.012 22.7 7.9 61 17-77 85-146 (175)
387 PF07111 HCR: Alpha helical co 22.3 1.1E+03 0.023 26.0 29.0 219 2-236 139-411 (739)
388 PF04100 Vps53_N: Vps53-like, 22.1 8.3E+02 0.018 24.7 13.3 95 141-235 17-115 (383)
389 PHA02047 phage lambda Rz1-like 22.1 3.9E+02 0.0084 20.9 6.7 49 482-530 33-81 (101)
390 PF14257 DUF4349: Domain of un 22.0 6.7E+02 0.015 23.6 9.7 86 91-180 105-193 (262)
391 KOG3335|consensus 22.0 1.2E+02 0.0027 26.4 3.7 89 437-531 66-154 (181)
392 PRK11578 macrolide transporter 22.0 8E+02 0.017 24.5 12.3 85 131-215 95-182 (370)
393 TIGR02132 phaR_Bmeg polyhydrox 21.8 5.6E+02 0.012 22.6 9.9 83 134-216 71-153 (189)
394 PF04201 TPD52: Tumour protein 21.8 5.3E+02 0.011 22.4 7.3 48 176-223 28-80 (162)
395 PF04880 NUDE_C: NUDE protein, 21.8 2E+02 0.0043 25.2 4.9 58 144-206 2-59 (166)
396 PF04645 DUF603: Protein of un 21.7 3.5E+02 0.0075 23.6 6.2 51 477-527 106-161 (181)
397 KOG3433|consensus 21.6 5.7E+02 0.012 22.7 11.9 92 137-228 76-167 (203)
398 PF05064 Nsp1_C: Nsp1-like C-t 21.3 3.6E+02 0.0077 21.9 6.2 53 478-530 52-104 (116)
399 PRK10476 multidrug resistance 21.3 8E+02 0.017 24.2 16.5 114 117-232 84-207 (346)
400 KOG3850|consensus 21.3 8.4E+02 0.018 24.4 14.1 101 72-176 262-373 (455)
401 PF13815 Dzip-like_N: Iguana/D 21.2 3.2E+02 0.007 22.2 5.9 43 486-528 76-118 (118)
402 PF04420 CHD5: CHD5-like prote 21.0 2.5E+02 0.0055 24.4 5.6 63 34-96 37-99 (161)
403 PF07544 Med9: RNA polymerase 21.0 3.8E+02 0.0081 20.3 6.2 55 173-227 24-81 (83)
404 TIGR00998 8a0101 efflux pump m 20.8 7.9E+02 0.017 23.9 15.5 112 107-222 77-203 (334)
405 PF14073 Cep57_CLD: Centrosome 20.8 5.9E+02 0.013 22.5 21.7 172 16-204 3-175 (178)
406 PHA02047 phage lambda Rz1-like 20.7 4.2E+02 0.009 20.7 6.6 41 475-515 33-73 (101)
407 PF04129 Vps52: Vps52 / Sac2 f 20.6 9.9E+02 0.021 25.3 10.9 69 149-217 14-82 (508)
408 PF08657 DASH_Spc34: DASH comp 20.5 3.9E+02 0.0085 25.3 7.1 73 146-218 177-259 (259)
409 PF13747 DUF4164: Domain of un 20.5 4.1E+02 0.0088 20.5 11.9 82 120-203 5-86 (89)
410 PF08946 Osmo_CC: Osmosensory 20.4 2.7E+02 0.0058 18.4 4.0 32 481-512 10-41 (46)
411 PF02996 Prefoldin: Prefoldin 20.1 4.6E+02 0.01 21.0 9.2 74 140-213 1-120 (120)
No 1
>KOG0996|consensus
Probab=100.00 E-value=9.4e-43 Score=361.11 Aligned_cols=448 Identities=38% Similarity=0.591 Sum_probs=346.2
Q ss_pred hhhhhHHHHHhHHhhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy14063 3 VLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTAN 82 (531)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (531)
..++.|++.+.++.++++.++++...||..++.+.+|+.+++++..+++.+++..+++...++......+..+++.+...
T Consensus 274 ~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~ 353 (1293)
T KOG0996|consen 274 RRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDE 353 (1293)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 35788999999999999999999999999999999999999999999999999998888888888777777777666554
Q ss_pred HHHHH---------------------------------------------------------HhHHHHHHHHH-------
Q psy14063 83 LESIK---------------------------------------------------------KCTDEMESAKS------- 98 (531)
Q Consensus 83 ~~~~~---------------------------------------------------------~~~~~~~~~~~------- 98 (531)
...+. .+.++++....
T Consensus 354 ~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~ 433 (1293)
T KOG0996|consen 354 NEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEK 433 (1293)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 33111 00111111110
Q ss_pred --------------HHHHH---------------------------HHhchhhcccccchHHHHHhHHhHhHHHHHHHHH
Q psy14063 99 --------------ELKTV---------------------------EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSEL 137 (531)
Q Consensus 99 --------------~~~~~---------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (531)
++..+ ++...+.++.+ +..++.++ +.+++.+++++
T Consensus 434 ~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~--~~~~~n~~--~~e~~vaesel 509 (1293)
T KOG0996|consen 434 APEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMP--LLKQVNEA--RSELDVAESEL 509 (1293)
T ss_pred CchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHH
Confidence 11111 33455556666 66666666 77777777777
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 138 EIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEK 217 (531)
Q Consensus 138 ~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~ 217 (531)
+.+.........+...++..+......+.+....+..+...+..+..++.+....+..+......+...+..+.+++.++
T Consensus 510 ~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ 589 (1293)
T KOG0996|consen 510 DILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEA 589 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777788888888888888888888888888888888888888888888888888888888888999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhhcCCCCcccccccccccCcchHHHHHHHhccCCcEEecchHHHHHHHHHHHHcCCCce
Q psy14063 218 RESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRV 297 (531)
Q Consensus 218 ~~~~~~~~~~~~~l~~l~~~~~~~~~~gv~g~l~~li~v~~~y~~Aie~~lg~l~~ivv~~~~~a~~~i~~Lk~~~~gr~ 297 (531)
++.++...++..++++|++.+..+.++|++|+||||..||++|..||.+||+.|++|||++.++|..||+||+.+++||+
T Consensus 590 ks~~~~~~s~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~kYDvAIsTac~~LdyiVVdt~e~aq~cI~fl~~~nLgra 669 (1293)
T KOG0996|consen 590 KSSLSSSRSRNKVLDALMRLKESGRIPGFYGRLGDLGAIDEKYDVAISTACARLDYIVVDTIETAQECINFLKKNNLGRA 669 (1293)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHcCCCCccccccccccccchHHHHHHHHhccccceEEeccHHHHHHHHHHHHHcCCCce
Confidence 98888888889999999988777789999999999999999999999998889999999999999999999999999999
Q ss_pred eEEeCcCCCcccccccCcCCCCccccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhhCCCccEEccCCceec
Q psy14063 298 NVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIE 377 (531)
Q Consensus 298 tflpl~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~~~~~~~vt~~G~~~~ 377 (531)
||++||.+........ +...|-.+++++|+|.|.||.++++|+++|++++||++++.|.++++..+
T Consensus 670 TFi~LDki~~~~~~l~-~i~tpenvPRLfDLv~~~d~~~r~aFYfaLrdtLV~d~LeQAtRiaygk~------------- 735 (1293)
T KOG0996|consen 670 TFIILDKIKDHQKKLA-PITTPENVPRLFDLVKCKDEKFRPAFYFALRDTLVADNLEQATRIAYGKD------------- 735 (1293)
T ss_pred eEEehHhhhhhhhccC-CCCCCCCcchHhhhhccCCHHHHHHHHHHHhhhhhhcCHHHHHHHhhcCC-------------
Confidence 9999999874321111 23445578899999999889999999999999999999999999887532
Q ss_pred CCCceecccccccccccccCCccccccccccccccCchhHHhhHHHHHhccccCCceeEEccccccccccccccCCCccc
Q psy14063 378 PSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNP 457 (531)
Q Consensus 378 ~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~~~~g~~~gg~~~~ 457 (531)
-++++||++|.+|+++|+|+||+...
T Consensus 736 ------------------------------------------------------rr~RVvTL~G~lIe~SGtmtGGG~~v 761 (1293)
T KOG0996|consen 736 ------------------------------------------------------RRWRVVTLDGSLIEKSGTMTGGGKKV 761 (1293)
T ss_pred ------------------------------------------------------CceEEEEecceeecccccccCCCCcC
Confidence 24889999999999999999988666
Q ss_pred cccccccccccc-ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhh
Q psy14063 458 IRGLMGRKATVS-TDTSLVKDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTCLI 525 (531)
Q Consensus 458 ~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 525 (531)
.+|.++.. .. +..+ ......+++++.........+..+..+++.+...+...+..++..++.+..
T Consensus 762 ~~g~mg~~--~~~t~~s-~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~ 827 (1293)
T KOG0996|consen 762 KGGRMGTS--IRVTGVS-KESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTA 827 (1293)
T ss_pred CCCCCCCc--cccCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHH
Confidence 66655544 21 1111 345566666666665555555555555555555555555554444444433
No 2
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.4e-35 Score=331.37 Aligned_cols=381 Identities=24% Similarity=0.355 Sum_probs=232.5
Q ss_pred hhhHHHHHhHHhhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy14063 5 YGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLE 84 (531)
Q Consensus 5 ~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (531)
++...+.+......+..++.+++.|+.+++.+.+|..++.++..++..++|.++.....++..+...+..++..+..+..
T Consensus 181 L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 260 (1163)
T COG1196 181 LERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQE 260 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555799999999999999999999999999999999999999998888888888888777777666
Q ss_pred HHHHhHHHHHHHHHHHHHH-------------------------------------HHh-------chhhccccc-----
Q psy14063 85 SIKKCTDEMESAKSELKTV-------------------------------------EKK-------GKESNVIGS----- 115 (531)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~-------------------------------------~~~-------~~~~~l~~~----- 115 (531)
.+......+..++.++..+ ... ..+..+...
T Consensus 261 ~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1163)
T COG1196 261 ELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELE 340 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433333322211111 000 000000000
Q ss_pred c----------hHHHHHhH-----H--------hHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 116 K----------FRWSVFSA-----K--------TRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLC 172 (531)
Q Consensus 116 ~----------~~~~~~~~-----~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l 172 (531)
. ....+... . .......+++++..+.........++..++.++..++..+..+...+
T Consensus 341 ~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~ 420 (1163)
T COG1196 341 ERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERL 420 (1163)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000000 0 00111111222222222222223333333333333333333333222
Q ss_pred HHHhhhhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-----
Q psy14063 173 EELTTRVPAMESEIA--------------ESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDF----- 233 (531)
Q Consensus 173 ~~l~~~~~~~~~~l~--------------~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~----- 233 (531)
..+..++..+..++. .+...++.+...+..+...+..++..+..+...+.....+...+..
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 500 (1163)
T COG1196 421 EDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRAS 500 (1163)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 222222222222222 2222222222222222222222222233333322222222222211
Q ss_pred -----HHHHHhhcCCCCcccccccccccCcchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCCc
Q psy14063 234 -----VMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQ 307 (531)
Q Consensus 234 -----l~~~~~~~~~~gv~g~l~~li~v~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~~ 307 (531)
++..... .++|++|+|+++++|+++|..||++++| .+++|||++..+|..||++|+.++.||+||+|++.+++
T Consensus 501 ~~~~~~~~~~~~-~~~Gv~G~v~~li~v~~~y~~Aie~alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~ 579 (1163)
T COG1196 501 QGVRAVLEALES-GLPGVYGPVAELIKVKEKYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKP 579 (1163)
T ss_pred hhHHHHHHHHhc-cCCCccchHHHhcCcChHHHHHHHHHcccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhcc
Confidence 1211122 2799999999999999999999999999 99999999999999999999999999999999999986
Q ss_pred ccccccCcCCCCccccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhhCCCccEEccCCceecCCCceecccc
Q psy14063 308 YHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDL 387 (531)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~~~~~~~vt~~G~~~~~~~~~~~~~~ 387 (531)
.....+ . ..+|++++++|+|+| ||.|++++.++||+++||++++.|..+.+...
T Consensus 580 ~~~~~~-~-~~~g~~~~a~dli~~-d~~~~~~~~~~l~~t~Iv~~l~~A~~l~~~~~----------------------- 633 (1163)
T COG1196 580 LRSLKS-D-AAPGFLGLASDLIDF-DPKYEPAVRFVLGDTLVVDDLEQARRLARKLR----------------------- 633 (1163)
T ss_pred cccccc-c-cccchhHHHHHHhcC-CHHHHHHHHHHhCCeEEecCHHHHHHHHHhcC-----------------------
Confidence 532111 1 157889999999999 78999999999999999999999998876531
Q ss_pred cccccccccCCccccccccccccccCchhHHhhHHHHHhccccCCceeEEccccccccccccccCCCcc
Q psy14063 388 NQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSN 456 (531)
Q Consensus 388 ~~~~~~g~~~~~~~~v~~~~~~~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~~~~g~~~gg~~~ 456 (531)
+++++||++|+++.++|+|+||+..
T Consensus 634 --------------------------------------------~~~riVTl~G~~~~~~G~~tGG~~~ 658 (1163)
T COG1196 634 --------------------------------------------IKYRIVTLDGDLVEPSGSITGGSRN 658 (1163)
T ss_pred --------------------------------------------CCceEEecCCcEEeCCeeeecCCcc
Confidence 5788999999999999999999543
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=100.00 E-value=4.7e-32 Score=313.59 Aligned_cols=116 Identities=28% Similarity=0.520 Sum_probs=100.3
Q ss_pred CCCcccccccccccCcchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCCcccccccCcCCCCcc
Q psy14063 243 VSGILGRLGDLGGIDQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPEN 321 (531)
Q Consensus 243 ~~gv~g~l~~li~v~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~~~~~~~~~~~~~~~~ 321 (531)
++|++|+|+++|+|+++|+.||++++| .+++|||++..+|..||.||+.+++||+||+||+.+++...+. ..+..+|+
T Consensus 520 ~~g~~g~l~dli~v~~~y~~Aie~~lg~~l~~ivv~~~~~a~~~i~~l~~~~~gr~tflpl~~~~~~~~~~-~~~~~~~~ 598 (1164)
T TIGR02169 520 IQGVHGTVAQLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDL-SILSEDGV 598 (1164)
T ss_pred CCCceecHHHhcCcCHHHHHHHHHHhhhhhCCEEECCHHHHHHHHHHHHhcCCCCeeeccHhhcCCCCCCc-ccccCCCc
Confidence 589999999999999999999999999 9999999999999999999999999999999999886421111 11122456
Q ss_pred ccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHH
Q psy14063 322 VPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIG 360 (531)
Q Consensus 322 ~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~ 360 (531)
++++.|+|.| ++.|.+++.++||+++||++++.|..++
T Consensus 599 ~~~~~~~i~~-~~~~~~~~~~~lg~~~v~~~l~~a~~~~ 636 (1164)
T TIGR02169 599 IGFAVDLVEF-DPKYEPAFKYVFGDTLVVEDIEAARRLM 636 (1164)
T ss_pred hHHHHHHccC-cHHHHHHHHHHCCCeEEEcCHHHHHHHh
Confidence 7778899999 7899999999999999999999998764
No 4
>KOG0964|consensus
Probab=100.00 E-value=9.2e-32 Score=274.03 Aligned_cols=244 Identities=21% Similarity=0.366 Sum_probs=191.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 140 FLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRE 219 (531)
Q Consensus 140 ~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~ 219 (531)
++.++..++..+....++++.+...+.+...++.++......+..++.++......++.+...++..+..+...+...+.
T Consensus 416 lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~ 495 (1200)
T KOG0964|consen 416 LQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEK 495 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444555555555555556666666777777788888888888888999999999999999988888
Q ss_pred HHHhhhhh--HHHHHHHHHHHhhcCCCCcccccccccccCcchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcCCCc
Q psy14063 220 SMQTSRSN--NRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGR 296 (531)
Q Consensus 220 ~~~~~~~~--~~~l~~l~~~~~~~~~~gv~g~l~~li~v~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~~gr 296 (531)
.+.....+ ...+..+.+.....+..|++|||++++.||+.|-+|||+..| +|+++||++.++|..++..|..-+.||
T Consensus 496 ~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~~~f~tavEvtaGNsLF~iVVdndevATkIl~~~n~m~~Gr 575 (1200)
T KOG0964|consen 496 NLRATMNRSVANGIDSVRKIKEELKPNGVFGTVYELIKVPNKFKTAVEVTAGNSLFNIVVDNDEVATKILRKLNKMKGGR 575 (1200)
T ss_pred HHHHhccchhhhhhHHHHHHHHHhcccccceehhhhhcCCHHHHhHHhhhcccceEEEEecccHHHHHHHHHHHhccCCe
Confidence 88765443 344444444333334579999999999999999999999999 999999999999999999999988999
Q ss_pred eeEEeCcCCCcccccccCcCCCCccccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhhCCCccEEccCCcee
Q psy14063 297 VNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAII 376 (531)
Q Consensus 297 ~tflpl~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~~~~~~~vt~~G~~~ 376 (531)
+||+||+.++++...+ +..+.+.|+++.+.| +|.|.+++.++||+++||.|++.|...++.
T Consensus 576 VTF~PLNrl~~r~v~y----p~~sdaiPli~kl~y-~p~fdka~k~Vfgktivcrdl~qa~~~ak~-------------- 636 (1200)
T KOG0964|consen 576 VTFMPLNRLKARDVEY----PKDSDAIPLISKLRY-EPQFDKALKHVFGKTIVCRDLEQALRLAKK-------------- 636 (1200)
T ss_pred eEEeecccCchhhccC----CCCCCccchHHHhCc-chhhHHHHHHHhCceEEeccHHHHHHHHHh--------------
Confidence 9999999998743222 222344678999999 799999999999999999999999988765
Q ss_pred cCCCceecccccccccccccCCccccccccccccccCchhHHhhHHHHHhccccCCceeEEccccccccccccccCCCcc
Q psy14063 377 EPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSN 456 (531)
Q Consensus 377 ~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~~~~g~~~gg~~~ 456 (531)
+.+.+||++|+.++..|.|+||+..
T Consensus 637 -------------------------------------------------------~~ln~ITl~GDqvskkG~lTgGy~D 661 (1200)
T KOG0964|consen 637 -------------------------------------------------------HELNCITLSGDQVSKKGVLTGGYED 661 (1200)
T ss_pred -------------------------------------------------------cCCCeEEeccceecccCCccccchh
Confidence 3467889999999999999999954
Q ss_pred c
Q psy14063 457 P 457 (531)
Q Consensus 457 ~ 457 (531)
.
T Consensus 662 ~ 662 (1200)
T KOG0964|consen 662 Q 662 (1200)
T ss_pred h
Confidence 3
No 5
>KOG0018|consensus
Probab=100.00 E-value=1.9e-29 Score=260.95 Aligned_cols=213 Identities=24% Similarity=0.404 Sum_probs=153.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCCcccccc
Q psy14063 172 CEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLG 251 (531)
Q Consensus 172 l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~gv~g~l~ 251 (531)
+..+......+...+..+.........+...++.++.....++.++........++......+...+ .+|||++|+|.
T Consensus 432 i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e~sR~~~~~eave~lK--r~fPgv~Grvi 509 (1141)
T KOG0018|consen 432 ITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRHEGSRRSRKQEAVEALK--RLFPGVYGRVI 509 (1141)
T ss_pred HHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHH--HhCCCccchhh
Confidence 3333333333333333333333344444444444444444444444333332222222222222222 36899999999
Q ss_pred cccccC-cchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCCcccccccCcCCCCccccccccce
Q psy14063 252 DLGGID-QKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLI 329 (531)
Q Consensus 252 ~li~v~-~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~~~~~~~~~~~~~~~~~~~~~d~i 329 (531)
|+|+.. .+|..|+.++|| .+++|||++..+|..||.||+.+++|..||+|||.+...+. ...++.++++..++|+|
T Consensus 510 DLc~pt~kkyeiAvt~~Lgk~~daIiVdte~ta~~CI~ylKeqr~~~~TFlPld~i~v~~~--~e~lr~~~g~rlv~Dvi 587 (1141)
T KOG0018|consen 510 DLCQPTQKKYEIAVTVVLGKNMDAIIVDTEATARDCIQYLKEQRLEPMTFLPLDSIRVKPV--NEKLRELGGVRLVIDVI 587 (1141)
T ss_pred hcccccHHHHHHHHHHHHhcccceEEeccHHHHHHHHHHHHHhccCCccccchhhhhcCcc--cccccCcCCeEEEEEec
Confidence 999985 789999999999 99999999999999999999999999999999999875432 12355677888999999
Q ss_pred ecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhhCCCccEEccCCceecCCCceecccccccccccccCCccccccccccc
Q psy14063 330 QVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAI 409 (531)
Q Consensus 330 ~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~~~~~~~vt~~G~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~ 409 (531)
+| +|+|+.++.|++|+++||++++.|+.+++..+
T Consensus 588 ~y-e~e~eka~~~a~gn~Lvcds~e~Ar~l~y~~~--------------------------------------------- 621 (1141)
T KOG0018|consen 588 NY-EPEYEKAVQFACGNALVCDSVEDARDLAYGGE--------------------------------------------- 621 (1141)
T ss_pred CC-CHHHHHHHHHHhccceecCCHHHHHHhhhccc---------------------------------------------
Confidence 99 68999999999999999999999998876521
Q ss_pred cccCchhHHhhHHHHHhccccCCceeEEccccccccccccccCCCcc
Q psy14063 410 IEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSN 456 (531)
Q Consensus 410 ~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~~~~g~~~gg~~~ 456 (531)
.++++||+||.+++.+|.|+||+..
T Consensus 622 ----------------------~r~k~valdGtl~~ksGlmsGG~s~ 646 (1141)
T KOG0018|consen 622 ----------------------IRFKVVALDGTLIHKSGLMSGGSSG 646 (1141)
T ss_pred ----------------------ccceEEEeeeeEEeccceecCCccC
Confidence 3578999999999999999999865
No 6
>KOG0933|consensus
Probab=99.97 E-value=4.1e-27 Score=241.44 Aligned_cols=362 Identities=22% Similarity=0.330 Sum_probs=211.6
Q ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-
Q psy14063 25 DLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTV- 103 (531)
Q Consensus 25 ~~~~Le~~~~~a~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~- 103 (531)
.+..|..+...+.+|......+..+...+..++|.............+...+..+..+.+.......+++.++.++.++
T Consensus 206 ~l~KLR~Ers~~lE~q~~~~dle~l~R~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~ 285 (1174)
T KOG0933|consen 206 RLEKLREERSQYLEYQKINRDLERLSRICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIE 285 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3455677777778888888999999999999999999999998888888888888888887777777777776666555
Q ss_pred ---------HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---------
Q psy14063 104 ---------EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTL--------- 165 (531)
Q Consensus 104 ---------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l--------- 165 (531)
....++..+.. ++...... ...+......+...+...+.+...|...+..+...+...
T Consensus 286 ~~rd~em~~~~~~L~~~~~~--~~~~~tr~--~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~ 361 (1174)
T KOG0933|consen 286 QQRDAEMGGEVKALEDKLDS--LQNEITRE--ETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEK 361 (1174)
T ss_pred HHHHHHhchhhhhHHHHHHH--HHHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 12222222222 22222222 222222222222222222222222211111111111111
Q ss_pred -----------------------------------------------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy14063 166 -----------------------------------------------TERKTLCEELTTRVPAMESEIAESRARLADLTR 198 (531)
Q Consensus 166 -----------------------------------------------~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~ 198 (531)
.....++....-+++.+..++...+.+......
T Consensus 362 ~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~ 441 (1174)
T KOG0933|consen 362 LKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASA 441 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhH
Confidence 111111111112222222222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------hHH-------HH---HHHHHH--------H-hhcCCC--Cc
Q psy14063 199 EEAKLLDQVEKLAREVSEKRESMQTSRS-----------NNR-------LI---DFVMQL--------K-SENRVS--GI 246 (531)
Q Consensus 199 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~-----------~~~-------~l---~~l~~~--------~-~~~~~~--gv 246 (531)
+.......+..++..+..++.++..+.. +.. +. +.+... . ..+.|. .|
T Consensus 442 ~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~~~f~Y~dP~~nfdrs~V 521 (1174)
T KOG0933|consen 442 EYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHEDIGRLKDELDRLLARLANYEFTYQDPEPNFDRSKV 521 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCccchHHHH
Confidence 2222222333333333333333332211 000 00 111100 0 001232 28
Q ss_pred cccccccccc-CcchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCCccccccc--C--cCCCCc
Q psy14063 247 LGRLGDLGGI-DQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCY--D--KYRTPE 320 (531)
Q Consensus 247 ~g~l~~li~v-~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~~~~~~~~--~--~~~~~~ 320 (531)
.|.|+.+|.| |..|.+|+++++| .++++||++..++..+++- .+--.|+|+|||+.|..+..++. . ....++
T Consensus 522 ~G~Va~Li~vkd~~~~tAle~~aGgrLynvVv~te~tgkqLLq~--g~l~rRvTiIPLnKI~s~~~s~~v~~~ak~v~~~ 599 (1174)
T KOG0933|consen 522 KGLVAKLIKVKDRSYATALETTAGGRLYNVVVDTEDTGKQLLQR--GNLRRRVTIIPLNKIQSFVLSPNVLQAAKNVGND 599 (1174)
T ss_pred HHHHHHHheeCcchHHHHHHHHhcCcceeEEeechHHHHHHhhc--ccccceeEEEechhhhhccCCHhHHHHHHHhcCc
Confidence 8999999999 6679999999999 9999999999999987751 11235899999999876432211 0 112345
Q ss_pred cccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhhCCCccEEccCCceecCCCceecccccccccccccCCcc
Q psy14063 321 NVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGY 400 (531)
Q Consensus 321 ~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~~~~~~~vt~~G~~~~~~~~~~~~~~~~~~~~g~~~~~~ 400 (531)
.+..+.++|.| |+.+.+++.|+||+++||++++.|..+++...
T Consensus 600 ~v~~al~Li~y-d~~l~~amefvFG~tlVc~~~d~AKkVaf~~~------------------------------------ 642 (1174)
T KOG0933|consen 600 NVELALSLIGY-DDELKKAMEFVFGSTLVCDSLDVAKKVAFDPK------------------------------------ 642 (1174)
T ss_pred hHHHHHHHhcC-CHHHHHHHHHHhCceEEecCHHHHHHhhcccc------------------------------------
Confidence 66788999999 79999999999999999999999998876421
Q ss_pred ccccccccccccCchhHHhhHHHHHhccccCCceeEEccccccccccccccCCCcccccc
Q psy14063 401 RMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRG 460 (531)
Q Consensus 401 ~~v~~~~~~~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~~~~g~~~gg~~~~~~~ 460 (531)
.+.+.||++||+++|+|+++||+...+++
T Consensus 643 -------------------------------i~~rsVTl~GDV~dP~GtlTGGs~~~~a~ 671 (1174)
T KOG0933|consen 643 -------------------------------IRTRSVTLEGDVYDPSGTLTGGSRSKGAD 671 (1174)
T ss_pred -------------------------------cccceeeecCceeCCCCcccCCCCCCccc
Confidence 35677999999999999999999665544
No 7
>KOG0250|consensus
Probab=99.94 E-value=2.9e-22 Score=209.97 Aligned_cols=361 Identities=15% Similarity=0.241 Sum_probs=204.8
Q ss_pred hhhHHHHHhHHhhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy14063 5 YGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLE 84 (531)
Q Consensus 5 ~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (531)
++...+.+....+.+..+++++...+...........+.+.+..++..++|+.|++.+.++......+...++++..+.+
T Consensus 223 ~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ 302 (1074)
T KOG0250|consen 223 LDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQE 302 (1074)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666666666666666678899999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHH--HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy14063 85 SIKKCTDEMESAKSELKTV--EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQ 162 (531)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e 162 (531)
+++....++..++.++.+. .+..+..+... ...++..+ +..+..+..+...++....+..+.+...+.....++
T Consensus 303 ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~--~d~Ei~~~--r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~ 378 (1074)
T KOG0250|consen 303 KIEEKQGKIEEARQKLTEIEAKIGELKDEVDA--QDEEIEEA--RKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLE 378 (1074)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh--hhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777777554433 22222222222 22233333 333333333333333333333333333333333333
Q ss_pred HHHHHH---------------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q psy14063 163 TTLTER---------------KTLCEELTTRVPAMESEIAESRARLADLTREEAK-------LLDQVEKLAREVSEKRES 220 (531)
Q Consensus 163 ~~l~~~---------------~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~-------~~~~l~~l~~~l~~~~~~ 220 (531)
..|... +.+++.+..+++.++..+..+..+.+.+...+.. .+..+.++...++.....
T Consensus 379 k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~ 458 (1074)
T KOG0250|consen 379 KQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEE 458 (1074)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322 2233333333333333333333333333222222 222222222222222222
Q ss_pred HHhhh------------hhHHHHHHHHHHHhhcCCCC-ccccccccccc-CcchHHHHHHHhc-cCCcEEecchHHHHHH
Q psy14063 221 MQTSR------------SNNRLIDFVMQLKSENRVSG-ILGRLGDLGGI-DQKYDIAVSTACG-ALNYIVTETVEAGEAV 285 (531)
Q Consensus 221 ~~~~~------------~~~~~l~~l~~~~~~~~~~g-v~g~l~~li~v-~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~ 285 (531)
+..+. ....+|..|-+... .|.+ +.||+|.++++ +|+|+.|||.+|| .+++|+|.+..|+..+
T Consensus 459 l~~lk~~k~dkvs~FG~~m~~lL~~I~r~~~--~f~~~P~GPlG~~Vtl~~~KWa~aIE~~L~n~lnaFiv~sh~D~~~L 536 (1074)
T KOG0250|consen 459 LKDLKKTKTDKVSAFGPNMPQLLRAIERRKR--RFQTPPKGPLGKYVTLKEPKWALAIERCLGNLLNAFIVTSHKDARIL 536 (1074)
T ss_pred HHHHHhcccchhhhcchhhHHHHHHHHHHHh--cCCCCCCCCccceeEecCcHHHHHHHHHHHHhhhhheeCCHhhHHHH
Confidence 22221 22445555544322 2433 88999999997 8899999999999 8999999999999988
Q ss_pred HHHHHHcCCC--ceeEEeCcCCCcccccccCcCCCCcc-ccccccceecCchHHHHHHHHhh--CCeEEEcCHHHHHHHH
Q psy14063 286 IAAVKRQNVG--RVNVIPLDKMQQYHSQCYDKYRTPEN-VPRLIDLIQVQDEKIRLAFYFAT--RETLVAQDLNQAKRIG 360 (531)
Q Consensus 286 i~~Lk~~~~g--r~tflpl~~~~~~~~~~~~~~~~~~~-~~~~~d~i~~~~~~~~~~~~~ll--g~~~v~~~l~~A~~~~ 360 (531)
-+.++..+.+ +.|++.- ...+. .++ ....|+. ++++.+++.+++|.+..++--.. ..+++++|-.+|..+.
T Consensus 537 r~i~~~~~~~~~~ptIvvs-~~~~~--~y~-~~~~p~~~~pTil~~le~ddp~V~N~LID~s~iE~~lLiEdk~Ea~~~m 612 (1074)
T KOG0250|consen 537 RAIMRRLKIPGNRPTIVVS-SFTPF--DYS-VGRNPGYEFPTILDALEFDDPEVLNVLIDKSGIEQVLLIEDKKEAREFM 612 (1074)
T ss_pred HHHHHHcCCCCCCCcEEEe-cCCcc--ccc-cccCCCCCCCceeeeeecCChHHHHHhhhhccceeEEEecchHHHHHHH
Confidence 8888887665 3444321 11111 111 1122333 57888999997653332222222 3589999988888777
Q ss_pred hhC--C--CccEEccCCce
Q psy14063 361 YSG--G--GYRMVTLEGAI 375 (531)
Q Consensus 361 ~~~--~--~~~~vt~~G~~ 375 (531)
... | -..+.|+||..
T Consensus 613 ~s~~~p~n~~~aytldg~~ 631 (1074)
T KOG0250|consen 613 QSDKPPANVTKAYTLDGRQ 631 (1074)
T ss_pred hcCCCCccceeeeccCccc
Confidence 542 2 12345555554
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.90 E-value=1.8e-19 Score=209.41 Aligned_cols=119 Identities=31% Similarity=0.469 Sum_probs=95.2
Q ss_pred CCCcccccccccccCcchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCCccccc--ccC-cCCC
Q psy14063 243 VSGILGRLGDLGGIDQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQ--CYD-KYRT 318 (531)
Q Consensus 243 ~~gv~g~l~~li~v~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~~~~~~--~~~-~~~~ 318 (531)
++|++|.+.+++.+++.|..|++.++| .+.++||++..+|..++.+++....|+++|+|++.+...... ... ....
T Consensus 518 ~~~~~g~~~~li~~~~~~~~a~~~~~g~~~~~ivv~~~~~a~~~~~~l~~~~~g~~~~l~l~~i~~~~~~~~~~~~~~~~ 597 (1179)
T TIGR02168 518 LSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNI 597 (1179)
T ss_pred cCCCccchhceeeeChhHHHHHHHHHHHHhcCeEECCHHHHHHHHHHhcccCCCcEEEeeccccccccccccchhhcccc
Confidence 467889999999999999999999999 888899999999999999999988999999999887542101 000 1122
Q ss_pred CccccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhh
Q psy14063 319 PENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYS 362 (531)
Q Consensus 319 ~~~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~ 362 (531)
.|++..+.|++.| ++.+..++.+.+|++.+|.+++.|..+.+.
T Consensus 598 ~~~~~~~~dl~~~-~~~~~~~~~~~~~~~~ivt~l~~a~~~~~~ 640 (1179)
T TIGR02168 598 EGFLGVAKDLVKF-DPKLRKALSYLLGGVLVVDDLDNALELAKK 640 (1179)
T ss_pred CchhHHHHHHhcc-cHhHHHHHHHHhCCceEeCCHHHHHHHHHH
Confidence 3556677788888 688888888889998899999999887654
No 9
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=99.82 E-value=1.4e-19 Score=151.73 Aligned_cols=117 Identities=38% Similarity=0.612 Sum_probs=101.2
Q ss_pred CCcccccccccccCcchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCCcccccccC-cCCCCcc
Q psy14063 244 SGILGRLGDLGGIDQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYD-KYRTPEN 321 (531)
Q Consensus 244 ~gv~g~l~~li~v~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~~~~~~~~~-~~~~~~~ 321 (531)
+|++|+|+++++|+++|+.||+++|| .++++||++.++|..+++++++++.|+++|+|++.+.+....... ....+++
T Consensus 2 ~gv~G~l~dli~v~~~~~~Ave~~LG~~l~~iVV~~~~~a~~~i~~l~~~~~gr~~~i~l~~~~~~~~~~~~~~~~~~~~ 81 (120)
T PF06470_consen 2 PGVLGRLADLIEVDPKYEKAVEAALGGRLQAIVVEDEETAKKIIEFLKENKLGRATFIPLDKIRSRSSASSADQIRPPGG 81 (120)
T ss_dssp TTEEEEGGGSEEESGGGHHHHHHHHGGGGGSEEESSHHHHHHHHHHHHHTTSCEEEEEETTTTGGGTTSCCCGGHHSTTS
T ss_pred CCeeeeHHhceecCHHHHHHHHHHHHHhhceEEECcHHHHHHHHHHHhhccCCeEEEEECccccccccccchhhccCCcc
Confidence 58999999999999999999999999 999999999999999999999999999999999987654311100 0012467
Q ss_pred ccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHH
Q psy14063 322 VPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIG 360 (531)
Q Consensus 322 ~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~ 360 (531)
..++.|+|+|+++.|++++.++||++++|+|+++|.+++
T Consensus 82 ~~~l~d~i~~~d~~~~~~~~~llg~~~vv~~l~~A~~la 120 (120)
T PF06470_consen 82 AGPLIDLIEFPDEEYRPALEFLLGDVVVVDDLEEARKLA 120 (120)
T ss_dssp EEEGGGGEEESCGGGHHHHHHHHTTEEEESSHHHHHHHH
T ss_pred hHHHHHhcccCcHHHHHHHHHHcCCEEEECCHHHHHHhC
Confidence 789999999977899999999999999999999998763
No 10
>KOG0979|consensus
Probab=99.74 E-value=1.1e-14 Score=151.74 Aligned_cols=331 Identities=13% Similarity=0.112 Sum_probs=215.6
Q ss_pred hhhhHHHHHhHHhhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy14063 4 LYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANL 83 (531)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (531)
.-.+|...+..+.+.++.++.+...|+++++.+.++..+...+..+..+++|..|.....++..++...+.+...++.+.
T Consensus 189 ~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~ 268 (1072)
T KOG0979|consen 189 DEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLE 268 (1072)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHH---------HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy14063 84 ESIKKCTDEMESAKSELKTV---------EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADL 154 (531)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 154 (531)
+.+..+...++.++++.... .+......+.. ....+..+ ..++......++.++......+.+|..+
T Consensus 269 k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~--~~ek~~~~--~~~v~~~~~~le~lk~~~~~rq~~i~~~ 344 (1072)
T KOG0979|consen 269 KEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQE--KFEKLKEI--EDEVEEKKNKLESLKKAAEKRQKRIEKA 344 (1072)
T ss_pred HhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888888777755444 23333333333 44444555 6666666777777777777777777777
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH-
Q psy14063 155 EANLEKVQTTLTERK------TLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRES-----MQ- 222 (531)
Q Consensus 155 ~~~i~~~e~~l~~~~------~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~-----~~- 222 (531)
+..|...+..+.+.. .+..++..+..+.......-..+....+.........+.+....+...... ..
T Consensus 345 ~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~l~~~kr~~~~~~~~~~~k~~~~ 424 (1072)
T KOG0979|consen 345 KKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSSKLRDSRQEIDAEQLKSQKLRDLENKKRKLKQNSDLNRQKRYRV 424 (1072)
T ss_pred HHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 777777777776542 333333333222222211111111122222222222222222222111111 11
Q ss_pred ---hhhhhHHHHHHHHHHHhhcCCCC-ccccccccccc-CcchHHHHHHHhc--cCCcEEecchHHHHHHHHHHHHcCCC
Q psy14063 223 ---TSRSNNRLIDFVMQLKSENRVSG-ILGRLGDLGGI-DQKYDIAVSTACG--ALNYIVTETVEAGEAVIAAVKRQNVG 295 (531)
Q Consensus 223 ---~~~~~~~~l~~l~~~~~~~~~~g-v~g~l~~li~v-~~~y~~Aie~~lg--~l~~ivv~~~~~a~~~i~~Lk~~~~g 295 (531)
.....++++.|+.++.+ .|++ +|||+.--+.| +++|+.+||.++| .+..|||.+.+|...++..++.....
T Consensus 425 l~~~~~d~~dAy~wlrenr~--~FK~~vyeP~~m~l~~k~~~~A~~lEn~v~~~~~~~Fi~~~~eD~~lf~~~i~d~k~~ 502 (1072)
T KOG0979|consen 425 LRQGSSDAYDAYQWLRENRS--EFKDEVYEPPIMTLNVKNAEFAKYLENFVGFNDLKAFICCDSEDYLLFVKKIKDEKWR 502 (1072)
T ss_pred hccCchHHHHHHHHHHHCHH--HhcccccCCceEEEecCChHHHHHHHcccCccccceeeeechHHHHHHHHHhhhccee
Confidence 11234667788877533 4666 99996666666 8899999999999 78999999999999998888875322
Q ss_pred ceeE--EeCcCCCccc-cc-ccCcCCCCccccccccceecCchHHHHHHHHhh
Q psy14063 296 RVNV--IPLDKMQQYH-SQ-CYDKYRTPENVPRLIDLIQVQDEKIRLAFYFAT 344 (531)
Q Consensus 296 r~tf--lpl~~~~~~~-~~-~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~ll 344 (531)
-.+. +|-+..-+.. ++ +++.+...||.|.+.+++++|+ +++.+++
T Consensus 503 vn~~~~~~~~~k~~d~~p~~sre~l~~lGF~gyls~f~~~p~----~vm~~Lc 551 (1072)
T KOG0979|consen 503 VNASEVIPREKKYADKIPAQSREELKRLGFEGYLSNFIEAPE----PVMSYLC 551 (1072)
T ss_pred eeceeccccccccccCCCccCHHHHHhcChHHHhhhhhcCcH----HHHHHHH
Confidence 1111 1211110100 00 1112345688899999999953 4565555
No 11
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.70 E-value=4.2e-14 Score=164.36 Aligned_cols=127 Identities=27% Similarity=0.305 Sum_probs=94.6
Q ss_pred CccccccccceecCchHHHHHHHHhhCC---eEEEcCHHHHHHHHhh-----CCCccEEccCCceecCCCceeccccccc
Q psy14063 319 PENVPRLIDLIQVQDEKIRLAFYFATRE---TLVAQDLNQAKRIGYS-----GGGYRMVTLEGAIIEPSETLVAQDLNQA 390 (531)
Q Consensus 319 ~~~~~~~~d~i~~~~~~~~~~~~~llg~---~~v~~~l~~A~~~~~~-----~~~~~~vt~~G~~~~~~~~~~~~~~~~~ 390 (531)
+|.+|++.+++.+ ++.|..++..++|+ .+||++.++|..++.. .|+..|++++-. .+.. +. ... +
T Consensus 521 ~g~~g~l~dli~v-~~~y~~Aie~~lg~~l~~ivv~~~~~a~~~i~~l~~~~~gr~tflpl~~~--~~~~-~~-~~~--~ 593 (1164)
T TIGR02169 521 QGVHGTVAQLGSV-GERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKM--RDER-RD-LSI--L 593 (1164)
T ss_pred CCceecHHHhcCc-CHHHHHHHHHHhhhhhCCEEECCHHHHHHHHHHHHhcCCCCeeeccHhhc--CCCC-CC-ccc--c
Confidence 5677789999999 69999999999995 6799999999776632 256777776522 1110 00 001 1
Q ss_pred ccccccCCccccccccccc-----cccCchhHHhhHHHHHhccccCCceeEEccccccccccccccCCCc
Q psy14063 391 KRIGYSGGGYRMVTLEGAI-----IEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGS 455 (531)
Q Consensus 391 ~~~g~~~~~~~~v~~~~~~-----~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~~~~g~~~gg~~ 455 (531)
..+|.++++.++|.|++.+ +++|+++||++++.|..++. ++++||++|++++++|+|+||+.
T Consensus 594 ~~~~~~~~~~~~i~~~~~~~~~~~~~lg~~~v~~~l~~a~~~~~---~~~~vTldG~~~~~~G~~tgG~~ 660 (1164)
T TIGR02169 594 SEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMG---KYRMVTLEGELFEKSGAMTGGSR 660 (1164)
T ss_pred cCCCchHHHHHHccCcHHHHHHHHHHCCCeEEEcCHHHHHHHhc---CCcEEEeCceeEcCCcCccCCCC
Confidence 1245566667788876644 78999999999999998653 67899999999999999999973
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.69 E-value=3.8e-13 Score=156.72 Aligned_cols=41 Identities=32% Similarity=0.282 Sum_probs=33.0
Q ss_pred CccccccccceecCchHHHHHHHHhhCCe---EEEcCHHHHHHHH
Q psy14063 319 PENVPRLIDLIQVQDEKIRLAFYFATRET---LVAQDLNQAKRIG 360 (531)
Q Consensus 319 ~~~~~~~~d~i~~~~~~~~~~~~~llg~~---~v~~~l~~A~~~~ 360 (531)
+|++|.+.+++.+ ++.|..++.+++|+. +||++.+.|....
T Consensus 519 ~~~~g~~~~li~~-~~~~~~a~~~~~g~~~~~ivv~~~~~a~~~~ 562 (1179)
T TIGR02168 519 SGILGVLSELISV-DEGYEAAIEAALGGRLQAVVVENLNAAKKAI 562 (1179)
T ss_pred CCCccchhceeee-ChhHHHHHHHHHHHHhcCeEECCHHHHHHHH
Confidence 3456778899988 689999999999875 8999999876543
No 13
>KOG0964|consensus
Probab=99.68 E-value=2.2e-13 Score=140.86 Aligned_cols=126 Identities=20% Similarity=0.181 Sum_probs=81.3
Q ss_pred CCccccccccceecCchHHHHHHHHhhCC---eEEEcCHHHHHHHHhh-----CCCccEEccCCceecCCCceecccccc
Q psy14063 318 TPENVPRLIDLIQVQDEKIRLAFYFATRE---TLVAQDLNQAKRIGYS-----GGGYRMVTLEGAIIEPSETLVAQDLNQ 389 (531)
Q Consensus 318 ~~~~~~~~~d~i~~~~~~~~~~~~~llg~---~~v~~~l~~A~~~~~~-----~~~~~~vt~~G~~~~~~~~~~~~~~~~ 389 (531)
..|.+|++.++++| |+.|..|++..-|+ .+||++.+.|..++.. .|++.|++++-.-. +. ..+|.
T Consensus 521 ~ngv~G~v~eL~~v-~~~f~tavEvtaGNsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~-r~-----v~yp~ 593 (1200)
T KOG0964|consen 521 PNGVFGTVYELIKV-PNKFKTAVEVTAGNSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKA-RD-----VEYPK 593 (1200)
T ss_pred ccccceehhhhhcC-CHHHHhHHhhhcccceEEEEecccHHHHHHHHHHHhccCCeeEEeecccCch-hh-----ccCCC
Confidence 45788999999999 68999999999998 4799999999988853 24566776652211 00 11221
Q ss_pred cccccccCCccccccccc----cc-cccCchhHHhhHHHHHhccccCCceeEEccccccccccccccCCCccccccc
Q psy14063 390 AKRIGYSGGGYRMVTLEG----AI-IEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRGL 461 (531)
Q Consensus 390 ~~~~g~~~~~~~~v~~~~----~~-~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~~~~g~~~gg~~~~~~~~ 461 (531)
++.++ +.+..++|++ ++ .+++.++||.|++.|.+. . + ..+-+.|+.+|......|...+|-
T Consensus 594 --~sdai-Pli~kl~y~p~fdka~k~Vfgktivcrdl~qa~~~----a--k--~~~ln~ITl~GDqvskkG~lTgGy 659 (1200)
T KOG0964|consen 594 --DSDAI-PLISKLRYEPQFDKALKHVFGKTIVCRDLEQALRL----A--K--KHELNCITLSGDQVSKKGVLTGGY 659 (1200)
T ss_pred --CCCcc-chHHHhCcchhhHHHHHHHhCceEEeccHHHHHHH----H--H--hcCCCeEEeccceecccCCccccc
Confidence 12221 1222334444 44 899999999999999873 2 2 345556777777554333334443
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.66 E-value=5.6e-13 Score=152.10 Aligned_cols=425 Identities=17% Similarity=0.235 Sum_probs=214.4
Q ss_pred hHHHHHhHHhhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy14063 7 KYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESI 86 (531)
Q Consensus 7 ~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (531)
+....+..-...+..+..-+..|+.+.+....=.+.-.+...+...+-+.+......++..+..++..+.+.+..+...+
T Consensus 176 ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 255 (1163)
T COG1196 176 EAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEEL 255 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455556666666666655556667777777888888888889999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHH--HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHH
Q psy14063 87 KKCTDEMESAKSELKTV--EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKL-------ADLEAN 157 (531)
Q Consensus 87 ~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-------~~~~~~ 157 (531)
..+...+......+..+ ++..+...+.. ++...... ...+..+..++..+..+......++ ..+...
T Consensus 256 ~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~--~~~~~~~~--~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1163)
T COG1196 256 EELQEELEEAEKEIEELKSELEELREELEE--LQEELLEL--KEEIEELEGEISLLRERLEELENELEELEERLEELKEK 331 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888877 67777777666 54544444 4344444444444444433333333 333333
Q ss_pred HHHHHHHHHHH-------HHHHHHHhhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Q psy14063 158 LEKVQTTLTER-------KTLCEELTTRVPAMESEIA----ESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTS-- 224 (531)
Q Consensus 158 i~~~e~~l~~~-------~~~l~~l~~~~~~~~~~l~----~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~-- 224 (531)
+...+..+... ......+.......+.... .....+..++..+..+...+.....++..++.++..+
T Consensus 332 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~ 411 (1163)
T COG1196 332 IEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEE 411 (1163)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333222 1111111111111111111 1112222222333333333333333333333332222
Q ss_pred -----hhhHHHH-HHHHHHHhhcCCCCccccccc---cc-ccCcchHHHHHHH--hc-cCCcEEecchHHHHH-------
Q psy14063 225 -----RSNNRLI-DFVMQLKSENRVSGILGRLGD---LG-GIDQKYDIAVSTA--CG-ALNYIVTETVEAGEA------- 284 (531)
Q Consensus 225 -----~~~~~~l-~~l~~~~~~~~~~gv~g~l~~---li-~v~~~y~~Aie~~--lg-~l~~ivv~~~~~a~~------- 284 (531)
..+...+ ..+..... .+...-..+.+ .+ .....+..+.... +. .+..+ -.....+..
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 488 (1163)
T COG1196 412 RLERLSERLEDLKEELKELEA--ELEELQTELEELNEELEELEEQLEELRDRLKELERELAEL-QEELQRLEKELSSLEA 488 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 2111111 00000000 00000000000 00 0011111110000 00 00000 000000000
Q ss_pred HHHHHHHcCCCceeEEeCcCCCcccccccCcCCCCccccccccceecCchHHHHHHHHhhCC---eEEEcCHHHHHHHH-
Q psy14063 285 VIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRE---TLVAQDLNQAKRIG- 360 (531)
Q Consensus 285 ~i~~Lk~~~~gr~tflpl~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~llg~---~~v~~~l~~A~~~~- 360 (531)
-+.-|... .+. +-+ +.+.. ... ....+|.+|++.+++.| +++|..|+..++|+ .+||+|..+|..+.
T Consensus 489 ~~~~l~~~--~~~-~~~---~~~~~-~~~-~~~~~Gv~G~v~~li~v-~~~y~~Aie~alG~~l~~vVV~~~~~a~~~i~ 559 (1163)
T COG1196 489 RLDRLEAE--QRA-SQG---VRAVL-EAL-ESGLPGVYGPVAELIKV-KEKYETALEAALGNRLQAVVVENEEVAKKAIE 559 (1163)
T ss_pred HHHHHHHH--hhh-hhh---HHHHH-HHH-hccCCCccchHHHhcCc-ChHHHHHHHHHcccccCCeeeCChHHHHHHHH
Confidence 00111100 000 000 00000 000 11257889999999999 67999999999995 68999987776554
Q ss_pred --hh--CCCccEEccCCceecCCCceecccccccccccccCCccccccccccc-----cccCchhHHhhHHHHHhccccC
Q psy14063 361 --YS--GGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAI-----IEPSETLVAQDLNQAKRIGYSG 431 (531)
Q Consensus 361 --~~--~~~~~~vt~~G~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~-----~l~~~~~~~~~l~~a~~~~~~~ 431 (531)
+. .+...|+++++..-.+.. +....+|+++.++++|+|++.+ ++|++++||++++.|+.+
T Consensus 560 ~lk~~~~gr~tflpl~~i~~~~~~-------~~~~~~g~~~~a~dli~~d~~~~~~~~~~l~~t~Iv~~l~~A~~l---- 628 (1163)
T COG1196 560 FLKENKAGRATFLPLDRIKPLRSL-------KSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDTLVVDDLEQARRL---- 628 (1163)
T ss_pred HHhhcCCCccccCchhhhcccccc-------ccccccchhHHHHHHhcCCHHHHHHHHHHhCCeEEecCHHHHHHH----
Confidence 32 245667666654311111 1111578888899999998744 899999999999999874
Q ss_pred CceeEEccccccccccccccCCCcccccc
Q psy14063 432 GGYRMVTLEGAIIEPSGTMSGGGSNPIRG 460 (531)
Q Consensus 432 ~~~~~vt~~g~~~~~~g~~~gg~~~~~~~ 460 (531)
.........+|+..|.+.-++|...+|
T Consensus 629 --~~~~~~~~riVTl~G~~~~~~G~~tGG 655 (1163)
T COG1196 629 --ARKLRIKYRIVTLDGDLVEPSGSITGG 655 (1163)
T ss_pred --HHhcCCCceEEecCCcEEeCCeeeecC
Confidence 223346778999999866555444455
No 15
>KOG0018|consensus
Probab=99.53 E-value=3.4e-10 Score=119.34 Aligned_cols=95 Identities=15% Similarity=0.231 Sum_probs=74.9
Q ss_pred hhhHHHHHhHHhhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy14063 5 YGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLE 84 (531)
Q Consensus 5 ~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (531)
...+-..+.....+.+.+..+...-+.+.+++..|..+.++....+..+.-.++...+..+..+..++..++..+..+..
T Consensus 169 ~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~ 248 (1141)
T KOG0018|consen 169 MAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKE 248 (1141)
T ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHh
Confidence 34445556666677777888888888888889999999999988888876668888999999999999999999988888
Q ss_pred HHHHhHHHHHHHHHH
Q psy14063 85 SIKKCTDEMESAKSE 99 (531)
Q Consensus 85 ~~~~~~~~~~~~~~~ 99 (531)
..+....++.....+
T Consensus 249 ~~d~~e~ei~~~k~e 263 (1141)
T KOG0018|consen 249 RMDKKEREIRVRKKE 263 (1141)
T ss_pred hhhHHHHHHHHHHHH
Confidence 777776666665543
No 16
>KOG0996|consensus
Probab=99.44 E-value=3.8e-09 Score=112.51 Aligned_cols=191 Identities=20% Similarity=0.208 Sum_probs=129.9
Q ss_pred CCCccccccccceecCchHHHHHHHHhhC--CeEEEcCHHHHHHHHh---h--CCCccEEccCCceecCCCceecccccc
Q psy14063 317 RTPENVPRLIDLIQVQDEKIRLAFYFATR--ETLVAQDLNQAKRIGY---S--GGGYRMVTLEGAIIEPSETLVAQDLNQ 389 (531)
Q Consensus 317 ~~~~~~~~~~d~i~~~~~~~~~~~~~llg--~~~v~~~l~~A~~~~~---~--~~~~~~vt~~G~~~~~~~~~~~~~~~~ 389 (531)
..|||+|.+.|+-.+ |+.|+.|+..+++ +.+||++.++|...+. . .|+.+|+++|-.--+....+.
T Consensus 614 ~i~Gf~GRLGDLg~I-d~kYDvAIsTac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~~~l~~------ 686 (1293)
T KOG0996|consen 614 RIPGFYGRLGDLGAI-DEKYDVAISTACARLDYIVVDTIETAQECINFLKKNNLGRATFIILDKIKDHQKKLAP------ 686 (1293)
T ss_pred CCCcccccccccccc-chHHHHHHHHhccccceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhhhccCC------
Confidence 357899999999999 7999999999887 4799999999976653 2 378889988743211111010
Q ss_pred cccccccCCcccccccc-ccc-----cccCchhHHhhHHHHHhccccCCceeEEccccccccccccccCCCccccccc--
Q psy14063 390 AKRIGYSGGGYRMVTLE-GAI-----IEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRGL-- 461 (531)
Q Consensus 390 ~~~~g~~~~~~~~v~~~-~~~-----~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~~~~g~~~gg~~~~~~~~-- 461 (531)
...|--+...+++|.+. +.+ +.+++++||++|+.|.+++| .. +-.+.+++..|.|..-+|+.+||.
T Consensus 687 i~tpenvPRLfDLv~~~d~~~r~aFYfaLrdtLV~d~LeQAtRiay--gk----~rr~RVvTL~G~lIe~SGtmtGGG~~ 760 (1293)
T KOG0996|consen 687 ITTPENVPRLFDLVKCKDEKFRPAFYFALRDTLVADNLEQATRIAY--GK----DRRWRVVTLDGSLIEKSGTMTGGGKK 760 (1293)
T ss_pred CCCCCCcchHhhhhccCCHHHHHHHHHHHhhhhhhcCHHHHHHHhh--cC----CCceEEEEecceeecccccccCCCCc
Confidence 11122233567888764 444 67999999999999988644 22 333678999999887665554442
Q ss_pred -ccccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhh
Q psy14063 462 -MGRKATVSTDTSLVKDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTCLI 525 (531)
Q Consensus 462 -~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 525 (531)
.++. ..+..+ -...-......++.+++........+..+...+.+.+..+...+..+.-
T Consensus 761 v~~g~--mg~~~~---~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~ 820 (1293)
T KOG0996|consen 761 VKGGR--MGTSIR---VTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELEN 820 (1293)
T ss_pred CCCCC--CCCccc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 1222 222211 1122345778888888888888888888888888888888777766543
No 17
>KOG0250|consensus
Probab=99.42 E-value=2.7e-08 Score=106.21 Aligned_cols=449 Identities=15% Similarity=0.203 Sum_probs=211.0
Q ss_pred HhHHhhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy14063 12 RTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTD 91 (531)
Q Consensus 12 ~~~~~~~~~~~e~~~~~Le~~~~~a~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (531)
+..-.+.+...+..+..++++..++.+.+.--+.++.+...+-+..-.-.=..+.....++..+...+...+++...+..
T Consensus 223 ~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ 302 (1074)
T KOG0250|consen 223 LDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQE 302 (1074)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556777777777777776665544444444333333222222233444555555555555555556556655
Q ss_pred HHHHHHHHHHHH--HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 92 EMESAKSELKTV--EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERK 169 (531)
Q Consensus 92 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~ 169 (531)
+++.....+..+ .+...+..+.. +..+.+.. ..+++.+...+...+.+..+++.++..+...+.........++
T Consensus 303 ki~~~~~k~~~~r~k~teiea~i~~--~~~e~~~~--d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~ 378 (1074)
T KOG0250|consen 303 KIEEKQGKIEEARQKLTEIEAKIGE--LKDEVDAQ--DEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLE 378 (1074)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHH--HHHhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544443 33344444444 44444444 5555555555555555555555555555555555555555555
Q ss_pred HHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCCccc
Q psy14063 170 TLCEELTTRV-PAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILG 248 (531)
Q Consensus 170 ~~l~~l~~~~-~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~gv~g 248 (531)
..+.+++.+. ..+..++.+...++..+..+...++..+..+..+++.....+.........+ -
T Consensus 379 k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i---------------~- 442 (1074)
T KOG0250|consen 379 KQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHI---------------E- 442 (1074)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---------------H-
Confidence 5555555544 4444445555555555555555555544444444444444433322111001 0
Q ss_pred ccccccccCc--ch-HHHHHHHhc----cCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCCcccccccCcCCCCcc
Q psy14063 249 RLGDLGGIDQ--KY-DIAVSTACG----ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPEN 321 (531)
Q Consensus 249 ~l~~li~v~~--~y-~~Aie~~lg----~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~~~~~~~~~~~~~~~~ 321 (531)
+...++.. .+ ..-|...-. .+..|= .+. -.++..+..... -| ..+.
T Consensus 443 --~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG-~~m---~~lL~~I~r~~~---~f------------------~~~P 495 (1074)
T KOG0250|consen 443 --GEILQLRKKIENISEELKDLKKTKTDKVSAFG-PNM---PQLLRAIERRKR---RF------------------QTPP 495 (1074)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcccchhhhcc-hhh---HHHHHHHHHHHh---cC------------------CCCC
Confidence 01111100 00 000000000 000110 000 011111111000 00 0112
Q ss_pred ccccccceecCchHHHHHHHHhhCC---eEEEcCHHHHHHHH---hh--CCC--ccEEcc--CCceecCCCceecccccc
Q psy14063 322 VPRLIDLIQVQDEKIRLAFYFATRE---TLVAQDLNQAKRIG---YS--GGG--YRMVTL--EGAIIEPSETLVAQDLNQ 389 (531)
Q Consensus 322 ~~~~~d~i~~~~~~~~~~~~~llg~---~~v~~~l~~A~~~~---~~--~~~--~~~vt~--~G~~~~~~~~~~~~~~~~ 389 (531)
.||+..+|.+++|.|..+++..||+ .+||.+..++..+. +. .|+ +.+|+. +|..+..+
T Consensus 496 ~GPlG~~Vtl~~~KWa~aIE~~L~n~lnaFiv~sh~D~~~Lr~i~~~~~~~~~~ptIvvs~~~~~~y~~~---------- 565 (1074)
T KOG0250|consen 496 KGPLGKYVTLKEPKWALAIERCLGNLLNAFIVTSHKDARILRAIMRRLKIPGNRPTIVVSSFTPFDYSVG---------- 565 (1074)
T ss_pred CCCccceeEecCcHHHHHHHHHHHHhhhhheeCCHhhHHHHHHHHHHcCCCCCCCcEEEecCCccccccc----------
Confidence 3456667777688999999999986 57888887765432 22 232 444432 22222111
Q ss_pred cccccc-cCCcccccccc-ccc-c------ccCchhHHhhHHHHHh-cccc--CCc-eeEEcccccccccccc---ccCC
Q psy14063 390 AKRIGY-SGGGYRMVTLE-GAI-I------EPSETLVAQDLNQAKR-IGYS--GGG-YRMVTLEGAIIEPSGT---MSGG 453 (531)
Q Consensus 390 ~~~~g~-~~~~~~~v~~~-~~~-~------l~~~~~~~~~l~~a~~-~~~~--~~~-~~~vt~~g~~~~~~g~---~~gg 453 (531)
..||. ..-.++.+.++ +.+ + =...+++..|-..|.+ +.+. .+. ..+-|++|..+...|- ++.+
T Consensus 566 -~~p~~~~pTil~~le~ddp~V~N~LID~s~iE~~lLiEdk~Ea~~~m~s~~~p~n~~~aytldg~~~~~~g~~~~~ySt 644 (1074)
T KOG0250|consen 566 -RNPGYEFPTILDALEFDDPEVLNVLIDKSGIEQVLLIEDKKEAREFMQSDKPPANVTKAYTLDGRQIFAGGPNYRVYST 644 (1074)
T ss_pred -cCCCCCCCceeeeeecCChHHHHHhhhhccceeEEEecchHHHHHHHhcCCCCccceeeeccCccccccCCCCcceecc
Confidence 11122 11112233442 222 1 1356677777666665 3333 222 2355899987766554 2222
Q ss_pred Cccccc--ccccccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhh
Q psy14063 454 GSNPIR--GLMGRKATVSTDTSLVKDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTCLID 526 (531)
Q Consensus 454 ~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 526 (531)
.+.... +. +.... ...+..++.++..++.++..+..++.+.+..+.++...+..+...+...+..
T Consensus 645 ~~~~~r~~~~------~~~s~--d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~ 711 (1074)
T KOG0250|consen 645 RGTRARRPGV------DEFSF--DDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRR 711 (1074)
T ss_pred CCCCCCCccc------cchhH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211111 11 11111 2667777777777777766666666666666666666666655555544443
No 18
>KOG0933|consensus
Probab=99.32 E-value=5.4e-08 Score=102.26 Aligned_cols=133 Identities=14% Similarity=0.132 Sum_probs=87.5
Q ss_pred cccccccceecCchHHHHHHHHhhCC---eEEEcCHHHHHHHHhh---CCCccEEccCCceecCCCceecccccc--ccc
Q psy14063 321 NVPRLIDLIQVQDEKIRLAFYFATRE---TLVAQDLNQAKRIGYS---GGGYRMVTLEGAIIEPSETLVAQDLNQ--AKR 392 (531)
Q Consensus 321 ~~~~~~d~i~~~~~~~~~~~~~llg~---~~v~~~l~~A~~~~~~---~~~~~~vt~~G~~~~~~~~~~~~~~~~--~~~ 392 (531)
..|.+..+|++.|..|..|+....|+ -+||+|-+.+..++.. ..++.+|+++-....+ +++...+. .-.
T Consensus 521 V~G~Va~Li~vkd~~~~tAle~~aGgrLynvVv~te~tgkqLLq~g~l~rRvTiIPLnKI~s~~---~s~~v~~~ak~v~ 597 (1174)
T KOG0933|consen 521 VKGLVAKLIKVKDRSYATALETTAGGRLYNVVVDTEDTGKQLLQRGNLRRRVTIIPLNKIQSFV---LSPNVLQAAKNVG 597 (1174)
T ss_pred HHHHHHHHheeCcchHHHHHHHHhcCcceeEEeechHHHHHHhhcccccceeEEEechhhhhcc---CCHhHHHHHHHhc
Confidence 45677788888778898899988886 4788998999888763 2567788877443211 11111111 122
Q ss_pred ccccCCccccccccccc-----cccCchhHHhhHHHHHhccccCCceeEEccccccccccccccCCCcccccccc
Q psy14063 393 IGYSGGGYRMVTLEGAI-----IEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRGLM 462 (531)
Q Consensus 393 ~g~~~~~~~~v~~~~~~-----~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~~~~g~~~gg~~~~~~~~~ 462 (531)
++-+.+++++|.|++.+ |+||.++||++++.|++++| .+ + ..-..|+..|.+...+|...||..
T Consensus 598 ~~~v~~al~Li~yd~~l~~amefvFG~tlVc~~~d~AKkVaf--~~-~---i~~rsVTl~GDV~dP~GtlTGGs~ 666 (1174)
T KOG0933|consen 598 NDNVELALSLIGYDDELKKAMEFVFGSTLVCDSLDVAKKVAF--DP-K---IRTRSVTLEGDVYDPSGTLTGGSR 666 (1174)
T ss_pred CchHHHHHHHhcCCHHHHHHHHHHhCceEEecCHHHHHHhhc--cc-c---cccceeeecCceeCCCCcccCCCC
Confidence 44555777888888766 89999999999999988533 11 1 111236777777766666555543
No 19
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.14 E-value=1.5e-07 Score=107.76 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=43.1
Q ss_pred CCCcccccccccc-cCcchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHc
Q psy14063 243 VSGILGRLGDLGG-IDQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQ 292 (531)
Q Consensus 243 ~~gv~g~l~~li~-v~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~ 292 (531)
++|++ |+++++ |+++|+.|+++++| .+++|||++..+|..+|++|..+
T Consensus 682 ~~Gvl--vsel~~~v~~~~~~~~~A~lg~~~~~iVv~d~~~A~~ai~~L~~~ 731 (1486)
T PRK04863 682 FGGVL--LSEIYDDVSLEDAPYFSALYGPARHAIVVPDLSDAAEQLAGLEDC 731 (1486)
T ss_pred cCCee--hhHhhhccCcchHHHHHHHHHhhhCeEEeCCHHHHHHHHHhccCC
Confidence 45555 899998 99999999999999 89999999999999999999763
No 20
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.70 E-value=2.9e-05 Score=72.64 Aligned_cols=211 Identities=18% Similarity=0.194 Sum_probs=98.6
Q ss_pred hhhHHHHHhHHhhhhHHHHHHHhhccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy14063 5 YGKYDEERTEKLTRVQLVETDLKALEPELRKA-VNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANL 83 (531)
Q Consensus 5 ~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a-~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (531)
+..+...+.....++..++..+.........+ .++..+..++..+ -..+......+.....++..+.....+.+
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~l-----E~~le~~eerL~~~~~kL~~~e~~~de~e 77 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLL-----EEELERAEERLEEATEKLEEAEKRADESE 77 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555444 3444444444444 22233333333344444444444443333
Q ss_pred HHHHHhHHHHHHHHHHHHHH--HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy14063 84 ESIKKCTDEMESAKSELKTV--EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKV 161 (531)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~ 161 (531)
...+.+..........+..+ .+......... ....+.++ ..++..+...++....+...+..++..+..++...
T Consensus 78 r~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee--~e~k~~E~--~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~ 153 (237)
T PF00261_consen 78 RARKVLENREQSDEERIEELEQQLKEAKRRAEE--AERKYEEV--ERKLKVLEQELERAEERAEAAESKIKELEEELKSV 153 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH--HHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH
Confidence 33333333333333333222 22222333333 44444445 55555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14063 162 QTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTS 224 (531)
Q Consensus 162 e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 224 (531)
...+..++............++..+..+..++.............+..+...+..+...+...
T Consensus 154 ~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~ 216 (237)
T PF00261_consen 154 GNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKE 216 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554444444444444444444444444444444444444445555554444444433
No 21
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.58 E-value=0.0031 Score=73.78 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=57.9
Q ss_pred HHHhHHhhhhHHHHHHHhhccHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy14063 10 EERTEKLTRVQLVETDLKALEPELRKAVNFL-------ELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTAN 82 (531)
Q Consensus 10 ~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~~-------~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (531)
..+.+++..++.++..+..++.....+..+. ..........-......+......+..+..+++....++..+
T Consensus 223 ~~l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1353)
T TIGR02680 223 TDVADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEEREL 302 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666665554444 333333333334456666777777777777777777777777
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q psy14063 83 LESIKKCTDEMESAKSELKTV 103 (531)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ 103 (531)
+..+..++.+++.+..++..+
T Consensus 303 ~~~~~~le~~~~~l~~~~~~l 323 (1353)
T TIGR02680 303 DARTEALEREADALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777776666655
No 22
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.54 E-value=6.1e-05 Score=70.53 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=13.6
Q ss_pred hhhHHHHHhHHhhhhHHHHHHHhhccHHHHHH
Q psy14063 5 YGKYDEERTEKLTRVQLVETDLKALEPELRKA 36 (531)
Q Consensus 5 ~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a 36 (531)
++.+.+.+......++.........+.++...
T Consensus 10 ld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l 41 (237)
T PF00261_consen 10 LDEAEERLEEAEEKLKEAEKRAEKAEAEVASL 41 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444
No 23
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.39 E-value=0.011 Score=68.86 Aligned_cols=98 Identities=18% Similarity=0.210 Sum_probs=56.5
Q ss_pred hhhhHHHHHhHHhhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy14063 4 LYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHN--EIYQYERYVNMKNLGEHETKVQQMEQELTA 81 (531)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~~~~~~~l~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (531)
.++..+..+.+-...+..++..+..|+.+++.+.+|..+..++..+.. ......+.+....+......+..+..++..
T Consensus 301 kLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeelee 380 (1486)
T PRK04863 301 QLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEE 380 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555566789999999999999999888776333211 223334444455555555555555555555
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q psy14063 82 NLESIKKCTDEMESAKSELK 101 (531)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~ 101 (531)
+...+..+..++..++.++.
T Consensus 381 leeEleelEeeLeeLqeqLa 400 (1486)
T PRK04863 381 NEARAEAAEEEVDELKSQLA 400 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554444443
No 24
>PRK02224 chromosome segregation protein; Provisional
Probab=98.30 E-value=0.00092 Score=75.70 Aligned_cols=43 Identities=21% Similarity=0.331 Sum_probs=22.0
Q ss_pred hHHHHHhHHhhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Q psy14063 7 KYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRK 49 (531)
Q Consensus 7 ~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~~~~~~~l~~l 49 (531)
.+...+......+..++.++..++..++.+....+...++..+
T Consensus 472 ~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~~~~l~~l 514 (880)
T PRK02224 472 EDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERL 514 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555666666666555554444444444443
No 25
>PRK02224 chromosome segregation protein; Provisional
Probab=98.27 E-value=0.00066 Score=76.85 Aligned_cols=22 Identities=32% Similarity=0.285 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy14063 202 KLLDQVEKLAREVSEKRESMQT 223 (531)
Q Consensus 202 ~~~~~l~~l~~~l~~~~~~~~~ 223 (531)
.....+..++..+..++..+..
T Consensus 409 ~~e~~l~~l~~~~~~l~~~~~~ 430 (880)
T PRK02224 409 NAEDFLEELREERDELREREAE 430 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 26
>KOG0161|consensus
Probab=98.15 E-value=0.0027 Score=74.31 Aligned_cols=78 Identities=17% Similarity=0.234 Sum_probs=36.4
Q ss_pred hHHHHHhHHhhhhHHHHHHHhhccHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy14063 7 KYDEERTEKLTRVQLVETDLKALEPELRKA-VNFLELENCVQRKHNEI--YQYERYVNMKNLGEHETKVQQMEQELTANL 83 (531)
Q Consensus 7 ~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a-~~~~~~~~~l~~l~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (531)
.+...+.+...++...+.....|+.++.++ .+...++..+..+...+ ...+....+.++..++.++..+++.+..+.
T Consensus 905 ~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~ 984 (1930)
T KOG0161|consen 905 ELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLS 984 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555554 33344444444443332 233444444444444444444444444443
Q ss_pred H
Q psy14063 84 E 84 (531)
Q Consensus 84 ~ 84 (531)
.
T Consensus 985 k 985 (1930)
T KOG0161|consen 985 K 985 (1930)
T ss_pred H
Confidence 3
No 27
>KOG0161|consensus
Probab=98.12 E-value=0.0029 Score=74.02 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=33.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 141 LSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRES 220 (531)
Q Consensus 141 ~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~ 220 (531)
.....++...+.....++..+...+......+..+...+.++...+.++...++.-+.....+......+...+.+++.+
T Consensus 1061 ~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~ 1140 (1930)
T KOG0161|consen 1061 KKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEE 1140 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444444444444444444444444444444444444444444444444333
Q ss_pred H
Q psy14063 221 M 221 (531)
Q Consensus 221 ~ 221 (531)
+
T Consensus 1141 L 1141 (1930)
T KOG0161|consen 1141 L 1141 (1930)
T ss_pred H
Confidence 3
No 28
>PRK03918 chromosome segregation protein; Provisional
Probab=98.11 E-value=0.004 Score=70.67 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=8.3
Q ss_pred HHhHHhhhhHHHHHHHhhccHH
Q psy14063 11 ERTEKLTRVQLVETDLKALEPE 32 (531)
Q Consensus 11 ~~~~~~~~~~~~e~~~~~Le~~ 32 (531)
.+.+..+++..+..++..++..
T Consensus 460 ei~~l~~~~~~l~~~~~~l~~~ 481 (880)
T PRK03918 460 ELKRIEKELKEIEEKERKLRKE 481 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 29
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.09 E-value=0.0095 Score=55.94 Aligned_cols=91 Identities=14% Similarity=0.260 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 129 ECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVE 208 (531)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~ 208 (531)
++..+..++..++....++.++|..+-..++.+-..+...-.+.+++....+.+...+-........+...+..+...+.
T Consensus 159 ~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elr 238 (294)
T COG1340 159 KLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELR 238 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHH
Q psy14063 209 KLAREVSEKRE 219 (531)
Q Consensus 209 ~l~~~l~~~~~ 219 (531)
.+...+..++.
T Consensus 239 e~~k~ik~l~~ 249 (294)
T COG1340 239 ELEKKIKALRA 249 (294)
T ss_pred HHHHHHHHHHH
Confidence 55544444443
No 30
>PRK11637 AmiB activator; Provisional
Probab=98.07 E-value=0.009 Score=61.45 Aligned_cols=44 Identities=16% Similarity=0.196 Sum_probs=19.7
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy14063 57 ERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSEL 100 (531)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 100 (531)
++.....++...+.++..++.++..++..+..+...+......+
T Consensus 83 qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 83 AISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444433
No 31
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=98.06 E-value=3.6e-06 Score=70.15 Aligned_cols=104 Identities=25% Similarity=0.303 Sum_probs=73.8
Q ss_pred CccccccccceecCchHHHHHHHHhhCC---eEEEcCHHHHHHHHhh-----CCCccEEccCCceecCCCceeccccccc
Q psy14063 319 PENVPRLIDLIQVQDEKIRLAFYFATRE---TLVAQDLNQAKRIGYS-----GGGYRMVTLEGAIIEPSETLVAQDLNQA 390 (531)
Q Consensus 319 ~~~~~~~~d~i~~~~~~~~~~~~~llg~---~~v~~~l~~A~~~~~~-----~~~~~~vt~~G~~~~~~~~~~~~~~~~~ 390 (531)
+|.+|.+.+++++ +++|..+++.+||+ .+||++.+.|..+... .++..|++++.......... .+..
T Consensus 2 ~gv~G~l~dli~v-~~~~~~Ave~~LG~~l~~iVV~~~~~a~~~i~~l~~~~~gr~~~i~l~~~~~~~~~~~----~~~~ 76 (120)
T PF06470_consen 2 PGVLGRLADLIEV-DPKYEKAVEAALGGRLQAIVVEDEETAKKIIEFLKENKLGRATFIPLDKIRSRSSASS----ADQI 76 (120)
T ss_dssp TTEEEEGGGSEEE-SGGGHHHHHHHHGGGGGSEEESSHHHHHHHHHHHHHTTSCEEEEEETTTTGGGTTSCC----CGGH
T ss_pred CCeeeeHHhceec-CHHHHHHHHHHHHHhhceEEECcHHHHHHHHHHHhhccCCeEEEEECccccccccccc----hhhc
Confidence 4678899999999 89999999999995 7999999999776642 24566777664321111000 0000
Q ss_pred ccccccCCccccccc-cccc-----cccCchhHHhhHHHHHhc
Q psy14063 391 KRIGYSGGGYRMVTL-EGAI-----IEPSETLVAQDLNQAKRI 427 (531)
Q Consensus 391 ~~~g~~~~~~~~v~~-~~~~-----~l~~~~~~~~~l~~a~~~ 427 (531)
..+|.+.++.++|++ ++.+ ++|+++++|+|+++|.++
T Consensus 77 ~~~~~~~~l~d~i~~~d~~~~~~~~~llg~~~vv~~l~~A~~l 119 (120)
T PF06470_consen 77 RPPGGAGPLIDLIEFPDEEYRPALEFLLGDVVVVDDLEEARKL 119 (120)
T ss_dssp HSTTSEEEGGGGEEESCGGGHHHHHHHHTTEEEESSHHHHHHH
T ss_pred cCCcchHHHHHhcccCcHHHHHHHHHHcCCEEEECCHHHHHHh
Confidence 124556677788888 6555 899999999999999864
No 32
>KOG0979|consensus
Probab=98.05 E-value=0.009 Score=64.39 Aligned_cols=165 Identities=17% Similarity=0.214 Sum_probs=74.0
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHhchhhccccc-chHHHHHhHHhHhHHHH
Q psy14063 57 ERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTV---EKKGKESNVIGS-KFRWSVFSAKTRFECDI 132 (531)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~ 132 (531)
++.++....+.+........+.+..++..+..+.+..+...+..... ++-.....+..+ +...++... ....+.
T Consensus 182 eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~--k~~~~r 259 (1072)
T KOG0979|consen 182 ELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAY--KQAKDR 259 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHH--HHHHHH
Confidence 44444444445555555555555555555555544444443322111 111111111110 144444444 444444
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 133 AKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTL-------CEELTTRVPAMESEIAESRARLADLTREEAKLLD 205 (531)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~-------l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~ 205 (531)
++.++..+.+....+...+..++.+......++...... ..+.-..+......+..+...+..++.+....+.
T Consensus 260 ~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~ 339 (1072)
T KOG0979|consen 260 AKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQK 339 (1072)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554444444444444444444444444444433333 3333344444444444555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy14063 206 QVEKLAREVSEKRESMQT 223 (531)
Q Consensus 206 ~l~~l~~~l~~~~~~~~~ 223 (531)
.+......+.+++..++.
T Consensus 340 ~i~~~~k~i~~~q~el~~ 357 (1072)
T KOG0979|consen 340 RIEKAKKMILDAQAELQE 357 (1072)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 555555555555555543
No 33
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.00 E-value=0.005 Score=66.05 Aligned_cols=62 Identities=15% Similarity=0.152 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14063 163 TTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTS 224 (531)
Q Consensus 163 ~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 224 (531)
..+.+++..+......+..+..+...++.++..++........++..+..++.++.......
T Consensus 337 ~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 337 KKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444444444444444444444444433
No 34
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.00 E-value=0.012 Score=62.81 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q psy14063 42 LENCVQRKHNEIYQ 55 (531)
Q Consensus 42 ~~~~l~~l~~~l~~ 55 (531)
+++.|..+......
T Consensus 170 le~~l~~~e~~f~~ 183 (569)
T PRK04778 170 LEKQLENLEEEFSQ 183 (569)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555554433
No 35
>PRK03918 chromosome segregation protein; Provisional
Probab=97.99 E-value=0.0085 Score=68.02 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=6.3
Q ss_pred hHHHHHhHHhhhhHHHH
Q psy14063 7 KYDEERTEKLTRVQLVE 23 (531)
Q Consensus 7 ~l~~~~~~~~~~~~~~e 23 (531)
.+...+..-.+++..++
T Consensus 463 ~l~~~~~~l~~~~~~l~ 479 (880)
T PRK03918 463 RIEKELKEIEEKERKLR 479 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 36
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.97 E-value=0.005 Score=66.05 Aligned_cols=70 Identities=21% Similarity=0.312 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 151 LADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRES 220 (531)
Q Consensus 151 i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~ 220 (531)
+..+..++..+...+......+..+......++.++..+......+..++..+..++..+...+.++...
T Consensus 332 ~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 332 FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444444444444444444443
No 37
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.94 E-value=0.019 Score=58.89 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=7.6
Q ss_pred hHHHHHHHhhccHHHHHH
Q psy14063 19 VQLVETDLKALEPELRKA 36 (531)
Q Consensus 19 ~~~~e~~~~~Le~~~~~a 36 (531)
...++.++..|+.++++.
T Consensus 159 ~~~Le~e~~~l~~~v~~l 176 (546)
T PF07888_consen 159 NEQLEEEVEQLREEVERL 176 (546)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 38
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.91 E-value=0.011 Score=69.44 Aligned_cols=43 Identities=23% Similarity=0.155 Sum_probs=19.1
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy14063 58 RYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSEL 100 (531)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 100 (531)
....+..+..+...+..+...+..++..+..+...+..+...+
T Consensus 883 r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1311)
T TIGR00606 883 RQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEK 925 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443333
No 39
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.85 E-value=0.032 Score=59.31 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q psy14063 42 LENCVQRKHNEI 53 (531)
Q Consensus 42 ~~~~l~~l~~~l 53 (531)
+++.+..+....
T Consensus 166 Le~~L~~ie~~F 177 (560)
T PF06160_consen 166 LEKQLENIEEEF 177 (560)
T ss_pred HHHHHHHHHHHH
Confidence 455555554443
No 40
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.83 E-value=0.038 Score=56.81 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=6.4
Q ss_pred HHHHHHhhccHHHHHH
Q psy14063 21 LVETDLKALEPELRKA 36 (531)
Q Consensus 21 ~~e~~~~~Le~~~~~a 36 (531)
.+.+....|+.+....
T Consensus 154 eL~~~~~~Le~e~~~l 169 (546)
T PF07888_consen 154 ELLKENEQLEEEVEQL 169 (546)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 41
>PRK11637 AmiB activator; Provisional
Probab=97.81 E-value=0.038 Score=56.89 Aligned_cols=41 Identities=2% Similarity=0.046 Sum_probs=19.8
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy14063 55 QYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMES 95 (531)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 95 (531)
...+......+...+.++..++.+|..++..+......+..
T Consensus 88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555544444444433
No 42
>KOG0977|consensus
Probab=97.77 E-value=0.017 Score=59.24 Aligned_cols=145 Identities=17% Similarity=0.201 Sum_probs=76.0
Q ss_pred hhhhhHHHHHhHHhhhhHHHHHHHhhccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy14063 3 VLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELE-NCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTA 81 (531)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~~~~~-~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (531)
+++-.||+.+...+++++.++.+...|+.++..+..-.... ..+..+ +-.++....+-+.........++.++..
T Consensus 42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~----ye~El~~ar~~l~e~~~~ra~~e~ei~k 117 (546)
T KOG0977|consen 42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAK----YEAELATARKLLDETARERAKLEIEITK 117 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHH----hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999886554322 222222 2334444444444444444444444444
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH--HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy14063 82 NLESIKKCTDEMESAKSELKTV--EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLE 155 (531)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 155 (531)
+...++.+...+.+........ .+..+...+.. ++.++..+ ...+..+..++..++.+...+...|..++
T Consensus 118 l~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~--leAe~~~~--krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 118 LREELKELRKKLEKAEKERRGAREKLDDYLSRLSE--LEAEINTL--KRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhh--hhhHHHHH--HHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4444444444444433322222 22333333334 44444444 33434344444444333333333333333
No 43
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.75 E-value=0.024 Score=66.76 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=8.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Q psy14063 167 ERKTLCEELTTRVPAMESEIAESR 190 (531)
Q Consensus 167 ~~~~~l~~l~~~~~~~~~~l~~l~ 190 (531)
.++.++..+...+..+..++....
T Consensus 988 ~le~e~~~l~~~i~~l~kel~~~~ 1011 (1311)
T TIGR00606 988 ECEKHQEKINEDMRLMRQDIDTQK 1011 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 44
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.72 E-value=0.1 Score=56.65 Aligned_cols=102 Identities=17% Similarity=0.265 Sum_probs=56.4
Q ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 127 RFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQ 206 (531)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~ 206 (531)
..++..+.+++........+....|+.++..+...+.....+..+++.+...++.....+......+..+..+......+
T Consensus 300 ~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~E 379 (775)
T PF10174_consen 300 KSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGE 379 (775)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555666666666655555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH
Q psy14063 207 VEKLAREVSEKRESMQTSRSNN 228 (531)
Q Consensus 207 l~~l~~~l~~~~~~~~~~~~~~ 228 (531)
+..+...++.....+..+.++.
T Consensus 380 i~~l~d~~d~~e~ki~~Lq~ki 401 (775)
T PF10174_consen 380 IEDLRDMLDKKERKINVLQKKI 401 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555544443
No 45
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.68 E-value=0.068 Score=52.58 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=29.7
Q ss_pred hhhhhHHHHHhHHhhhhHHHHHHHhhccHHHHHH
Q psy14063 3 VLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 36 (531)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a 36 (531)
..+..||+.+...++++..++.+...|+.++...
T Consensus 4 ~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~ 37 (312)
T PF00038_consen 4 EELQSLNDRLASYIEKVRFLEQENKRLESEIEEL 37 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3567899999999999999999999999998876
No 46
>KOG1029|consensus
Probab=97.62 E-value=0.064 Score=56.21 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=18.0
Q ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy14063 127 RFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTL 165 (531)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l 165 (531)
...++...+++..++.++.+.++.+..+--+.+.+...+
T Consensus 478 ~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ql 516 (1118)
T KOG1029|consen 478 TKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQL 516 (1118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 444444444555555555555444444444444444333
No 47
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.61 E-value=0.086 Score=51.84 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=5.7
Q ss_pred HHHHhhccHHHHHH
Q psy14063 23 ETDLKALEPELRKA 36 (531)
Q Consensus 23 e~~~~~Le~~~~~a 36 (531)
+.++..|...++.+
T Consensus 53 e~el~~lr~~id~~ 66 (312)
T PF00038_consen 53 EEELRELRRQIDDL 66 (312)
T ss_dssp HHHHHCHHHHHHHH
T ss_pred hhHHHHhHHhhhhH
Confidence 34444444444433
No 48
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.60 E-value=0.066 Score=50.45 Aligned_cols=81 Identities=14% Similarity=0.236 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14063 144 QSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQT 223 (531)
Q Consensus 144 ~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~ 223 (531)
...+......+...+..+..+......++..+-...+.+..+.+.+...+..+......+...+.+++..+.++...+..
T Consensus 167 i~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~ 246 (294)
T COG1340 167 IDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKA 246 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444445555555555555555555555555555555555555555555544
Q ss_pred h
Q psy14063 224 S 224 (531)
Q Consensus 224 ~ 224 (531)
+
T Consensus 247 l 247 (294)
T COG1340 247 L 247 (294)
T ss_pred H
Confidence 3
No 49
>KOG0994|consensus
Probab=97.57 E-value=0.1 Score=57.16 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=24.6
Q ss_pred hhhhhHHHHHhHHhhhhHHHHHHHhhccHHHHHHHHHH
Q psy14063 3 VLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFL 40 (531)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~~ 40 (531)
+.|..|-..+++....+..++.-+..-..++.+|..+.
T Consensus 1511 eqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~ 1548 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQ 1548 (1758)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHH
Confidence 35666777777777777777666666666665554443
No 50
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.54 E-value=0.15 Score=53.79 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=21.6
Q ss_pred hhhHHHHHhHHhhhhHHHHHHHhhccHHHHHH
Q psy14063 5 YGKYDEERTEKLTRVQLVETDLKALEPELRKA 36 (531)
Q Consensus 5 ~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a 36 (531)
.+........+..++..+..++..|+...+.+
T Consensus 160 aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~ 191 (522)
T PF05701_consen 160 AEEAVSAAEENEEKVEELSKEIIALKESLESA 191 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556677777777777777777776654
No 51
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.50 E-value=0.14 Score=55.74 Aligned_cols=31 Identities=26% Similarity=0.277 Sum_probs=20.1
Q ss_pred hhHHHHHhHHhhhhHHHHHHHhhccHHHHHH
Q psy14063 6 GKYDEERTEKLTRVQLVETDLKALEPELRKA 36 (531)
Q Consensus 6 ~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a 36 (531)
+.++..+..+-+++..+++.+..|+.++...
T Consensus 227 ~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L 257 (775)
T PF10174_consen 227 EALQTVIEEKDTKIASLERMLRDLEDEIYRL 257 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777766666666666655
No 52
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.49 E-value=0.077 Score=57.31 Aligned_cols=35 Identities=14% Similarity=0.205 Sum_probs=19.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 140 FLSTQSKETKKLADLEANLEKVQTTLTERKTLCEE 174 (531)
Q Consensus 140 ~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~ 174 (531)
.+.+..+++.++..++.++...++.+..++.+..+
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~ 577 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQE 577 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555554433
No 53
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.48 E-value=0.024 Score=60.51 Aligned_cols=25 Identities=12% Similarity=-0.020 Sum_probs=10.9
Q ss_pred hHHHHHhHHhHhHHHHHHHHHHHHHhh
Q psy14063 117 FRWSVFSAKTRFECDIAKSELEIFLST 143 (531)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (531)
+...+..+ ......+..+++.+...
T Consensus 315 l~~~l~~~--~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 315 LPDFLEHA--KEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHc
Confidence 33344444 44444444444444443
No 54
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.44 E-value=0.046 Score=50.23 Aligned_cols=30 Identities=13% Similarity=0.255 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q psy14063 154 LEANLEKVQTTLTERKTLCEELTTRVPAME 183 (531)
Q Consensus 154 ~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~ 183 (531)
+..++..++.++..++.++.++...+..++
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 55
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.44 E-value=0.031 Score=47.56 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q psy14063 156 ANLEKVQTTLTER 168 (531)
Q Consensus 156 ~~i~~~e~~l~~~ 168 (531)
.++..++.++...
T Consensus 80 rriq~LEeele~a 92 (143)
T PF12718_consen 80 RRIQLLEEELEEA 92 (143)
T ss_pred hhHHHHHHHHHHH
Confidence 3333333333333
No 56
>KOG0971|consensus
Probab=97.42 E-value=0.18 Score=53.89 Aligned_cols=8 Identities=25% Similarity=0.409 Sum_probs=3.5
Q ss_pred chHHHHHH
Q psy14063 259 KYDIAVST 266 (531)
Q Consensus 259 ~y~~Aie~ 266 (531)
.|..|||.
T Consensus 577 ayaraie~ 584 (1243)
T KOG0971|consen 577 AYARAIEM 584 (1243)
T ss_pred HHHHHHHH
Confidence 34444443
No 57
>PRK01156 chromosome segregation protein; Provisional
Probab=97.41 E-value=0.22 Score=56.63 Aligned_cols=7 Identities=14% Similarity=0.306 Sum_probs=2.6
Q ss_pred EEccccc
Q psy14063 436 MVTLEGA 442 (531)
Q Consensus 436 ~vt~~g~ 442 (531)
+||-+-+
T Consensus 865 ~ish~~~ 871 (895)
T PRK01156 865 MISHHRE 871 (895)
T ss_pred EEECchH
Confidence 3343333
No 58
>KOG0971|consensus
Probab=97.39 E-value=0.28 Score=52.60 Aligned_cols=13 Identities=15% Similarity=0.301 Sum_probs=6.7
Q ss_pred HHHHHHHHHHcCC
Q psy14063 282 GEAVIAAVKRQNV 294 (531)
Q Consensus 282 a~~~i~~Lk~~~~ 294 (531)
.+.+|+.||..++
T Consensus 712 lD~~ieLLkk~ql 724 (1243)
T KOG0971|consen 712 LDFLIELLKKDQL 724 (1243)
T ss_pred HHHHHHHHhhccc
Confidence 3445555665544
No 59
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.34 E-value=0.17 Score=59.16 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy14063 65 LGEHETKVQQMEQELTANLESIKKCTDEMESAKSEL 100 (531)
Q Consensus 65 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 100 (531)
+..+..+++.++..+..+......+..++.....++
T Consensus 354 l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l 389 (1201)
T PF12128_consen 354 LPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKL 389 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555544444443
No 60
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.29 E-value=0.27 Score=53.28 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=10.9
Q ss_pred HHHHHHhhccHHHHHHHH
Q psy14063 21 LVETDLKALEPELRKAVN 38 (531)
Q Consensus 21 ~~e~~~~~Le~~~~~a~~ 38 (531)
.++.+++.|+.+......
T Consensus 422 rLE~dvkkLraeLq~~Rq 439 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQ 439 (697)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 466666666666665533
No 61
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.29 E-value=0.33 Score=51.19 Aligned_cols=6 Identities=0% Similarity=-0.202 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy14063 44 NCVQRK 49 (531)
Q Consensus 44 ~~l~~l 49 (531)
.++..+
T Consensus 179 ~Ei~~l 184 (522)
T PF05701_consen 179 KEIIAL 184 (522)
T ss_pred HHHHHH
Confidence 333333
No 62
>KOG4674|consensus
Probab=97.27 E-value=0.52 Score=55.25 Aligned_cols=52 Identities=6% Similarity=0.081 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHH--HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHH
Q psy14063 92 EMESAKSELKTV--EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKE 147 (531)
Q Consensus 92 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (531)
.+..+...++.+ ++.+++..+.. ++.++... ..++..++.+...++.+..++
T Consensus 1244 k~qEl~~~i~kl~~el~plq~~l~e--l~~e~~~~--~ael~~l~~e~~~wK~R~q~L 1297 (1822)
T KOG4674|consen 1244 KIQELRDKIEKLNFELAPLQNELKE--LKAELQEK--VAELKKLEEENDRWKQRNQDL 1297 (1822)
T ss_pred HHHHHHHHHHHHHhhHhhHHHHHHH--HHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443 44455555555 55555555 555555555555555555444
No 63
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.25 E-value=0.25 Score=49.17 Aligned_cols=72 Identities=13% Similarity=0.173 Sum_probs=49.9
Q ss_pred hhhHHHHHHHhhccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy14063 17 TRVQLVETDLKALEPELRKA-VNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEM 93 (531)
Q Consensus 17 ~~~~~~e~~~~~Le~~~~~a-~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (531)
.+++.+..++..++...... .++..++.++..+ ..++...+..+......+..++.+|..++..++.+..+-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~-----e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSL-----ETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 56677777777777777766 5566677777777 556666677777777777777777777777666665544
No 64
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.24 E-value=0.74 Score=54.41 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=18.8
Q ss_pred ccccceecCchHHHHHHHHhhC-----CeEEEcC
Q psy14063 324 RLIDLIQVQDEKIRLAFYFATR-----ETLVAQD 352 (531)
Q Consensus 324 ~~~d~i~~~~~~~~~~~~~llg-----~~~v~~~ 352 (531)
+++++++.-++..+..++..|. +.+|+++
T Consensus 606 ~l~df~e~v~~~~ra~IEaAL~~~GLLDA~v~p~ 639 (1353)
T TIGR02680 606 QLVDFADDVPADVRAGLEAALEAAGLLDAWVTAD 639 (1353)
T ss_pred hheecCCCCCHHHHHHHHHHHHHCCCcceeeCCC
Confidence 4566665436778888888773 3566665
No 65
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.24 E-value=0.27 Score=52.17 Aligned_cols=104 Identities=13% Similarity=0.140 Sum_probs=60.9
Q ss_pred hHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHH
Q psy14063 117 FRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTR--VPAMESEIAESRARLA 194 (531)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~--~~~~~~~l~~l~~~~~ 194 (531)
+..++..+ +........+......++..+..+++.+..++...++.+..+..+++.+... ......++-++-..+.
T Consensus 424 L~~e~r~l--k~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~ 501 (594)
T PF05667_consen 424 LIEEYRRL--KEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIR 501 (594)
T ss_pred HHHHHHHH--HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHH
Confidence 44555555 4444444444444455556666666666667766666666666666665433 3444555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 195 DLTREEAKLLDQVEKLAREVSEKRESMQ 222 (531)
Q Consensus 195 ~l~~~~~~~~~~l~~l~~~l~~~~~~~~ 222 (531)
+.+.++..+-.....++.+++.+...+.
T Consensus 502 KQk~eI~KIl~DTr~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 502 KQKEEIEKILSDTRELQKEINSLTGKLD 529 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666665554
No 66
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.22 E-value=0.41 Score=50.97 Aligned_cols=10 Identities=30% Similarity=0.517 Sum_probs=5.8
Q ss_pred chHHHHHHHh
Q psy14063 259 KYDIAVSTAC 268 (531)
Q Consensus 259 ~y~~Aie~~l 268 (531)
.|..|++++.
T Consensus 531 ~Y~~ALe~i~ 540 (560)
T PF06160_consen 531 DYEKALETIA 540 (560)
T ss_pred CHHHHHHHHH
Confidence 4666666554
No 67
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.16 E-value=0.17 Score=45.42 Aligned_cols=92 Identities=14% Similarity=0.168 Sum_probs=49.3
Q ss_pred hhhhHHHHHhHHhhhhHHHHHHHhhccHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy14063 4 LYGKYDEERTEKLTRVQLVETDLKALEPELRK---A-VNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQEL 79 (531)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~---a-~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (531)
.|..|.+.+.+...++..+..+...|+.--.+ | ..|..-+.++-.+ +......++.+...+....+..
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpql--------l~~h~eEvr~Lr~~LR~~q~~~ 84 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQL--------LQRHNEEVRVLRERLRKSQEQE 84 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777766666555543332 2 3343333333333 3444445555555555555555
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q psy14063 80 TANLESIKKCTDEMESAKSELKTV 103 (531)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~ 103 (531)
..++..+.....++..+...+..+
T Consensus 85 r~~~~klk~~~~el~k~~~~l~~L 108 (194)
T PF15619_consen 85 RELERKLKDKDEELLKTKDELKHL 108 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555544443
No 68
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=97.14 E-value=0.37 Score=48.93 Aligned_cols=44 Identities=20% Similarity=0.421 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14063 181 AMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTS 224 (531)
Q Consensus 181 ~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 224 (531)
.+...++.+...+..++++.......+..++..-...+..+.++
T Consensus 379 ~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~ 422 (570)
T COG4477 379 ELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERL 422 (570)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333
No 69
>KOG0977|consensus
Probab=96.97 E-value=0.17 Score=52.13 Aligned_cols=21 Identities=10% Similarity=0.140 Sum_probs=8.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q psy14063 64 NLGEHETKVQQMEQELTANLE 84 (531)
Q Consensus 64 ~~~~~~~~~~~~~~~l~~~~~ 84 (531)
+.+.++.+-..+...|..+..
T Consensus 57 kVR~LEaqN~~L~~di~~lr~ 77 (546)
T KOG0977|consen 57 KVRFLEAQNRKLEHDINLLRG 77 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444433
No 70
>KOG0980|consensus
Probab=96.95 E-value=0.77 Score=49.38 Aligned_cols=15 Identities=13% Similarity=0.324 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy14063 68 HETKVQQMEQELTAN 82 (531)
Q Consensus 68 ~~~~~~~~~~~l~~~ 82 (531)
.+++++.+.+++..+
T Consensus 422 ~e~ry~klkek~t~l 436 (980)
T KOG0980|consen 422 AENRYEKLKEKYTEL 436 (980)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 71
>KOG0995|consensus
Probab=96.81 E-value=0.75 Score=47.20 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy14063 54 YQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELK 101 (531)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (531)
++..+...+.+...+...++.+..++..-+.+++.+..+...++..++
T Consensus 278 ~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 278 FQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666666666666666666666665555443
No 72
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.77 E-value=1 Score=48.08 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=19.5
Q ss_pred hHHHHHHHhhccHHHHHH-HHHHHHHHHHHHHHHHH
Q psy14063 19 VQLVETDLKALEPELRKA-VNFLELENCVQRKHNEI 53 (531)
Q Consensus 19 ~~~~e~~~~~Le~~~~~a-~~~~~~~~~l~~l~~~l 53 (531)
+..+..++..|..+++.. ....+++..|..+++++
T Consensus 31 ~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~ 66 (617)
T PF15070_consen 31 MQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQM 66 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333455555666666555 33445666666666554
No 73
>KOG4643|consensus
Probab=96.73 E-value=1.3 Score=48.55 Aligned_cols=89 Identities=13% Similarity=0.175 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 131 DIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKL 210 (531)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l 210 (531)
..+..-..+.......+..+|+.+++.+.....++..+...+..++.++......+.....+++.+...+..++.+-..+
T Consensus 470 ~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~L 549 (1195)
T KOG4643|consen 470 DQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHL 549 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33344444445555555666666666666666666666666666666666655555555555555555555555555555
Q ss_pred HHHHHHHHH
Q psy14063 211 AREVSEKRE 219 (531)
Q Consensus 211 ~~~l~~~~~ 219 (531)
..+|..+..
T Consensus 550 lkqI~~Lk~ 558 (1195)
T KOG4643|consen 550 LKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHH
Confidence 555554444
No 74
>KOG0612|consensus
Probab=96.73 E-value=1.4 Score=49.22 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy14063 53 IYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKC 89 (531)
Q Consensus 53 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (531)
+++.++.+...++...+.++..+...+..+...++..
T Consensus 491 l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~ 527 (1317)
T KOG0612|consen 491 LLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDA 527 (1317)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555544444433
No 75
>KOG0980|consensus
Probab=96.72 E-value=1.2 Score=48.10 Aligned_cols=13 Identities=54% Similarity=0.598 Sum_probs=5.0
Q ss_pred HHHHHhhccHHHH
Q psy14063 22 VETDLKALEPELR 34 (531)
Q Consensus 22 ~e~~~~~Le~~~~ 34 (531)
.+.++..++.+.+
T Consensus 363 ~~~ql~~le~~~~ 375 (980)
T KOG0980|consen 363 YENQLLALEGELQ 375 (980)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 76
>PRK09039 hypothetical protein; Validated
Probab=96.66 E-value=0.49 Score=46.91 Aligned_cols=7 Identities=29% Similarity=0.282 Sum_probs=2.8
Q ss_pred HHHHHHH
Q psy14063 285 VIAAVKR 291 (531)
Q Consensus 285 ~i~~Lk~ 291 (531)
+..+|+.
T Consensus 246 ia~~l~~ 252 (343)
T PRK09039 246 LAAALIE 252 (343)
T ss_pred HHHHHHH
Confidence 3334443
No 77
>KOG0994|consensus
Probab=96.62 E-value=1.6 Score=48.38 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy14063 203 LLDQVEKLAREVSEKRESMQTSR 225 (531)
Q Consensus 203 ~~~~l~~l~~~l~~~~~~~~~~~ 225 (531)
++..+...+..+.....++..+.
T Consensus 1715 Le~~y~~~~~~L~~~~aeL~~Le 1737 (1758)
T KOG0994|consen 1715 LELEYLRNEQALEDKAAELAGLE 1737 (1758)
T ss_pred HHHHHhhhhHHHHHHHHHhhhHH
Confidence 33333333333444444444333
No 78
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.60 E-value=0.78 Score=44.48 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=14.5
Q ss_pred HHHHhHHhhhhHHHHHHHhhccHHHHHH
Q psy14063 9 DEERTEKLTRVQLVETDLKALEPELRKA 36 (531)
Q Consensus 9 ~~~~~~~~~~~~~~e~~~~~Le~~~~~a 36 (531)
+..+.+..-.++++..++..+..+..-+
T Consensus 66 ~~~lr~gVfqlddi~~qlr~~rtel~~a 93 (499)
T COG4372 66 NRNLRSGVFQLDDIRPQLRALRTELGTA 93 (499)
T ss_pred hhhHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555544
No 79
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.56 E-value=0.82 Score=44.33 Aligned_cols=28 Identities=7% Similarity=0.240 Sum_probs=10.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy14063 65 LGEHETKVQQMEQELTANLESIKKCTDE 92 (531)
Q Consensus 65 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 92 (531)
+.+...++..+.+.-..+..+++.+..+
T Consensus 132 ~~kAqQ~lar~t~Q~q~lqtrl~~l~~q 159 (499)
T COG4372 132 LAKAQQELARLTKQAQDLQTRLKTLAEQ 159 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 80
>KOG0976|consensus
Probab=96.43 E-value=1.7 Score=46.32 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=19.2
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy14063 60 VNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKS 98 (531)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 98 (531)
+++.+...++-....+..++...+..++.+..+++.+++
T Consensus 267 ~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkq 305 (1265)
T KOG0976|consen 267 EIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQ 305 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555555555544444
No 81
>KOG0946|consensus
Probab=96.39 E-value=1.2 Score=47.48 Aligned_cols=30 Identities=13% Similarity=0.287 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy14063 67 EHETKVQQMEQELTANLESIKKCTDEMESA 96 (531)
Q Consensus 67 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 96 (531)
.++.+.+.++.++........++..++..+
T Consensus 682 ~l~~e~eeL~~~vq~~~s~hsql~~q~~~L 711 (970)
T KOG0946|consen 682 ELQVENEELEEEVQDFISEHSQLKDQLDLL 711 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 82
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.37 E-value=1.3 Score=44.34 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=10.5
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy14063 61 NMKNLGEHETKVQQMEQELTANLESIKK 88 (531)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (531)
++..+..++.++..++..+......++.
T Consensus 64 L~~~lk~~e~~i~~~~~ql~~s~~~l~~ 91 (420)
T COG4942 64 LEKQLKSLETEIASLEAQLIETADDLKK 91 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3333333333333333333333333333
No 83
>KOG0995|consensus
Probab=96.29 E-value=1.7 Score=44.82 Aligned_cols=18 Identities=11% Similarity=0.252 Sum_probs=8.2
Q ss_pred HHHHHhhccHHHHHHHHH
Q psy14063 22 VETDLKALEPELRKAVNF 39 (531)
Q Consensus 22 ~e~~~~~Le~~~~~a~~~ 39 (531)
+++....|+.++++++.|
T Consensus 264 lre~~~~L~~D~nK~~~y 281 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAY 281 (581)
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 344444444444444444
No 84
>KOG1003|consensus
Probab=96.29 E-value=0.7 Score=40.53 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=7.1
Q ss_pred HHHHHhhccHHHHHH
Q psy14063 22 VETDLKALEPELRKA 36 (531)
Q Consensus 22 ~e~~~~~Le~~~~~a 36 (531)
+...+..|+.+.+.+
T Consensus 9 lnrri~~leeele~a 23 (205)
T KOG1003|consen 9 LNRRIQLLEEELDRA 23 (205)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444555544
No 85
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.28 E-value=2.1 Score=45.85 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=12.5
Q ss_pred hhhHHHHHhHHhhhhHHHHHHHhhccHH
Q psy14063 5 YGKYDEERTEKLTRVQLVETDLKALEPE 32 (531)
Q Consensus 5 ~~~l~~~~~~~~~~~~~~e~~~~~Le~~ 32 (531)
+..|.++......++..+++.+..|+.+
T Consensus 38 v~~L~eEk~~~~~~V~eLE~sL~eLk~q 65 (617)
T PF15070_consen 38 VRTLKEEKEHDISRVQELERSLSELKNQ 65 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444433
No 86
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.24 E-value=2.4 Score=46.26 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=12.1
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHH
Q psy14063 58 RYVNMKNLGEHETKVQQMEQELTAN 82 (531)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (531)
....+.++..++.++.....++..+
T Consensus 264 r~~Le~ei~~le~e~~e~~~~l~~l 288 (650)
T TIGR03185 264 REQLERQLKEIEAARKANRAQLREL 288 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555554443
No 87
>KOG4674|consensus
Probab=96.22 E-value=3.9 Score=48.46 Aligned_cols=76 Identities=13% Similarity=0.197 Sum_probs=32.7
Q ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 127 RFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAK 202 (531)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~ 202 (531)
...+..+..+++...-+++++...+.....++......+.+....+......+..+..++......+..++..+..
T Consensus 390 ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~ 465 (1822)
T KOG4674|consen 390 YSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELES 465 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555444444444444444433333333333333333333333333333333333
No 88
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.21 E-value=0.07 Score=52.06 Aligned_cols=123 Identities=20% Similarity=0.240 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14063 146 KETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSR 225 (531)
Q Consensus 146 ~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ 225 (531)
....++..++.+...+.+++..++.+..++..++..++.+...+..+........+....++.....+...+..++....
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~ 126 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYAS 126 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444555555555555444444455555444444444444444444443322
Q ss_pred hhHHHHHHHHHHHhh--cCCCCccc-----ccccccccCcchHHHHHHHhc
Q psy14063 226 SNNRLIDFVMQLKSE--NRVSGILG-----RLGDLGGIDQKYDIAVSTACG 269 (531)
Q Consensus 226 ~~~~~l~~l~~~~~~--~~~~gv~g-----~l~~li~v~~~y~~Aie~~lg 269 (531)
...+.|+..-=.... -+..|.+| ++|.+-+++-.| .-|.+|+|
T Consensus 127 ~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGrl~~~~V~W-~EINAA~G 176 (314)
T PF04111_consen 127 NQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGRLPNVPVEW-NEINAAWG 176 (314)
T ss_dssp HHHHCHHT--TTTTT--EEEETTEEEETTEEE--BTTB---H-HHHHHHHH
T ss_pred HHHHHHHhcCchhceeeEeecCCeeeECCeeeccCCCCCCCh-HHHHHHHH
Confidence 221111110000000 01234444 456665566667 35677777
No 89
>KOG1003|consensus
Probab=95.97 E-value=1 Score=39.55 Aligned_cols=94 Identities=20% Similarity=0.222 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 128 FECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQV 207 (531)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l 207 (531)
.++......++....+.......+..+...+......+..+...-+.+.+..+.....+..+..++.+....-......+
T Consensus 88 rkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsV 167 (205)
T KOG1003|consen 88 RKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRV 167 (205)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 33334444444444444444444444444444444444444333333333334444444444433333333333333344
Q ss_pred HHHHHHHHHHHHHH
Q psy14063 208 EKLAREVSEKRESM 221 (531)
Q Consensus 208 ~~l~~~l~~~~~~~ 221 (531)
..+...+.++...+
T Consensus 168 akLeke~DdlE~kl 181 (205)
T KOG1003|consen 168 AKLEKERDDLEEKL 181 (205)
T ss_pred HHHcccHHHHHHhh
Confidence 44444444443333
No 90
>KOG0612|consensus
Probab=95.92 E-value=4 Score=45.95 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 148 TKKLADLEANLEKVQTTLTERKTLCEEL 175 (531)
Q Consensus 148 ~~~i~~~~~~i~~~e~~l~~~~~~l~~l 175 (531)
...+..++.++..++........++..+
T Consensus 622 ~e~~~~l~~~i~sL~~~~~~~~~~l~k~ 649 (1317)
T KOG0612|consen 622 SEIIAELKEEISSLEETLKAGKKELLKV 649 (1317)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhhHHHHH
Confidence 3333444444444444444444333333
No 91
>KOG0978|consensus
Probab=95.90 E-value=3.1 Score=44.53 Aligned_cols=91 Identities=20% Similarity=0.234 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 133 AKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAR 212 (531)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~ 212 (531)
+..+...+.........++......++.......+....+..++...+..+..+.+++........++.........++.
T Consensus 529 leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleE 608 (698)
T KOG0978|consen 529 LEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEE 608 (698)
T ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444444445555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHh
Q psy14063 213 EVSEKRESMQT 223 (531)
Q Consensus 213 ~l~~~~~~~~~ 223 (531)
++..++..+..
T Consensus 609 E~e~L~~kle~ 619 (698)
T KOG0978|consen 609 ELERLKRKLER 619 (698)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 92
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.86 E-value=2.1 Score=42.78 Aligned_cols=27 Identities=4% Similarity=0.095 Sum_probs=15.0
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy14063 57 ERYVNMKNLGEHETKVQQMEQELTANL 83 (531)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (531)
.+...-..+..++...+.+.+.+.+..
T Consensus 265 ~~~~i~~~i~~lk~~n~~l~e~i~ea~ 291 (622)
T COG5185 265 FVHIINTDIANLKTQNDNLYEKIQEAM 291 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666655555543
No 93
>KOG4673|consensus
Probab=95.81 E-value=3 Score=43.72 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy14063 202 KLLDQVEKLAREVSEKRESMQT 223 (531)
Q Consensus 202 ~~~~~l~~l~~~l~~~~~~~~~ 223 (531)
+++.+-..+-.++.+++..+..
T Consensus 577 ear~~~~~lvqqv~dLR~~L~~ 598 (961)
T KOG4673|consen 577 EARERESMLVQQVEDLRQTLSK 598 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555566655553
No 94
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.80 E-value=2.2 Score=42.06 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=18.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy14063 63 KNLGEHETKVQQMEQELTANLESIKKCTDEMESA 96 (531)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 96 (531)
++..-...-+..+...+..+......+...++.+
T Consensus 142 WR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l 175 (325)
T PF08317_consen 142 WRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQL 175 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555556555555555555444443
No 95
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=95.77 E-value=1.7 Score=40.40 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=46.0
Q ss_pred hhHHHHHhHHhhhhHHHHHHHhhccHHHHHH-HHHHH----HHHHHHHHHHHHHH-----HHHHHHhhhhhhHHHHHHHH
Q psy14063 6 GKYDEERTEKLTRVQLVETDLKALEPELRKA-VNFLE----LENCVQRKHNEIYQ-----YERYVNMKNLGEHETKVQQM 75 (531)
Q Consensus 6 ~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a-~~~~~----~~~~l~~l~~~l~~-----~~~~~~~~~~~~~~~~~~~~ 75 (531)
+.++-.+...+++++....+++.||.+.+.+ ..|.. .-.+|..+..+|.. .-|++.......+......+
T Consensus 3 e~~dprVq~eLe~LN~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~A 82 (239)
T PF05276_consen 3 EELDPRVQEELEKLNQATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKA 82 (239)
T ss_pred cccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999999988 44543 33445555444421 12444444444444444443
Q ss_pred HHHHHH
Q psy14063 76 EQELTA 81 (531)
Q Consensus 76 ~~~l~~ 81 (531)
-.....
T Consensus 83 a~~yer 88 (239)
T PF05276_consen 83 ALQYER 88 (239)
T ss_pred HHHHHH
Confidence 333333
No 96
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.70 E-value=2.4 Score=41.79 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14063 153 DLEANLEKVQTTLTER 168 (531)
Q Consensus 153 ~~~~~i~~~e~~l~~~ 168 (531)
.++.++......++..
T Consensus 213 ~lr~eL~~~~~~i~~~ 228 (325)
T PF08317_consen 213 ALRQELAEQKEEIEAK 228 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 97
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.62 E-value=2.2 Score=40.82 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=10.9
Q ss_pred HHHHhhccHHHHHH-HHHHHHHHHHHH
Q psy14063 23 ETDLKALEPELRKA-VNFLELENCVQR 48 (531)
Q Consensus 23 e~~~~~Le~~~~~a-~~~~~~~~~l~~ 48 (531)
..+...|+.+...+ ....+++.++..
T Consensus 96 ~~~~~~le~~L~~~~e~v~qLrHeL~~ 122 (306)
T PF04849_consen 96 SERNEALEEQLGAALEQVEQLRHELSM 122 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444 333344444433
No 98
>KOG4643|consensus
Probab=95.56 E-value=4.8 Score=44.29 Aligned_cols=30 Identities=10% Similarity=0.062 Sum_probs=14.5
Q ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy14063 127 RFECDIAKSELEIFLSTQSKETKKLADLEA 156 (531)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 156 (531)
..++..+...+..+..+...+..+|..+..
T Consensus 529 ~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 529 SNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 444444444444455555555555544444
No 99
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.53 E-value=2.1 Score=40.03 Aligned_cols=37 Identities=11% Similarity=0.133 Sum_probs=14.6
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy14063 58 RYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEME 94 (531)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 94 (531)
+.+...++...+.+++..+.++..++.+|..+...|.
T Consensus 61 i~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 61 IEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444444333333
No 100
>KOG0946|consensus
Probab=95.52 E-value=2.8 Score=44.86 Aligned_cols=26 Identities=8% Similarity=0.185 Sum_probs=9.7
Q ss_pred hhHHHHHhHHhhhhHHHHHHHhhccH
Q psy14063 6 GKYDEERTEKLTRVQLVETDLKALEP 31 (531)
Q Consensus 6 ~~l~~~~~~~~~~~~~~e~~~~~Le~ 31 (531)
++++..+.....-+..+..+...++.
T Consensus 653 e~l~~~~~kyK~lI~~lD~~~e~lkQ 678 (970)
T KOG0946|consen 653 EELDDIQQKYKGLIRELDYQIENLKQ 678 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33333333333333333333333333
No 101
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.38 E-value=2.9 Score=40.69 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=16.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy14063 63 KNLGEHETKVQQMEQELTANLESIKKCTDEMES 95 (531)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 95 (531)
++..-++.-+..+...+..+......+.+..+.
T Consensus 137 WR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~ 169 (312)
T smart00787 137 WRMKLLEGLKEGLDENLEGLKEDYKLLMKELEL 169 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555544444444443
No 102
>KOG4673|consensus
Probab=95.17 E-value=5 Score=42.17 Aligned_cols=28 Identities=11% Similarity=0.055 Sum_probs=13.4
Q ss_pred HHHhhccHHHHHH-HHHHHHHHHHHHHHH
Q psy14063 24 TDLKALEPELRKA-VNFLELENCVQRKHN 51 (531)
Q Consensus 24 ~~~~~Le~~~~~a-~~~~~~~~~l~~l~~ 51 (531)
..+..|++.+..+ +++-.++.+++.++.
T Consensus 409 QRva~lEkKvqa~~kERDalr~e~kslk~ 437 (961)
T KOG4673|consen 409 QRVATLEKKVQALTKERDALRREQKSLKK 437 (961)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3445555555544 444444444444443
No 103
>KOG4360|consensus
Probab=95.00 E-value=3.6 Score=41.71 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=19.8
Q ss_pred hhhHHHHHHHhhccHHHHHH-HHHHHHHHHHHHHHH
Q psy14063 17 TRVQLVETDLKALEPELRKA-VNFLELENCVQRKHN 51 (531)
Q Consensus 17 ~~~~~~e~~~~~Le~~~~~a-~~~~~~~~~l~~l~~ 51 (531)
.+-+.+..+...|+.++++. ..+..+.-++.....
T Consensus 90 k~nk~Lq~~nesLeEqv~~~~d~vvql~hels~k~e 125 (596)
T KOG4360|consen 90 KANKALQEDNESLEEQVDAPWDRVVQLGHELSRKDE 125 (596)
T ss_pred hhhhhhhhhhhhhHhhhcchHHHHHHhhhhhhhhhh
Confidence 33444666666777777666 555555555544433
No 104
>KOG0999|consensus
Probab=94.91 E-value=5.2 Score=40.94 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy14063 75 MEQELTANLESIKKCTDEMESAKSELKTV 103 (531)
Q Consensus 75 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 103 (531)
+..+|.++++.++++...+...+++.+.+
T Consensus 105 yl~kI~eleneLKq~r~el~~~q~E~erl 133 (772)
T KOG0999|consen 105 YLQKILELENELKQLRQELTNVQEENERL 133 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555444444444433
No 105
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.85 E-value=7.6 Score=42.61 Aligned_cols=44 Identities=27% Similarity=0.271 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q psy14063 477 DLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEY 520 (531)
Q Consensus 477 ~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 520 (531)
++..++.+...++..+..+..++..+..++.+....+..++.++
T Consensus 597 elE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL 640 (769)
T PF05911_consen 597 ELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSEL 640 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444
No 106
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=94.84 E-value=5.4 Score=40.86 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 187 AESRARLADLTREEAKLLDQVEKLAREVSEKRE 219 (531)
Q Consensus 187 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~ 219 (531)
..++..++.+...+..++.........+..++.
T Consensus 378 S~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lrk 410 (570)
T COG4477 378 SELQDNLEEIEKALTDIEDEQEKVQEHLTSLRK 410 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443
No 107
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.61 E-value=8 Score=42.41 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=20.6
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy14063 57 ERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELK 101 (531)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (531)
+......++..++++++.+...-..+.++++.+...-+.+...++
T Consensus 573 ~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 573 QKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555444444444444444444444444333
No 108
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.61 E-value=4.8 Score=39.22 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=6.7
Q ss_pred HHHHHHhhccHHHHHH
Q psy14063 21 LVETDLKALEPELRKA 36 (531)
Q Consensus 21 ~~e~~~~~Le~~~~~a 36 (531)
.+..+...+..+..++
T Consensus 54 ~l~kek~~l~~E~~k~ 69 (309)
T PF09728_consen 54 QLQKEKDQLQSELSKA 69 (309)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 109
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.56 E-value=5 Score=42.33 Aligned_cols=6 Identities=0% Similarity=-0.280 Sum_probs=2.3
Q ss_pred HHHHhH
Q psy14063 119 WSVFSA 124 (531)
Q Consensus 119 ~~~~~~ 124 (531)
.++.++
T Consensus 254 ~~l~~l 259 (498)
T TIGR03007 254 GRIEAL 259 (498)
T ss_pred HHHHHH
Confidence 333333
No 110
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.55 E-value=3.1 Score=36.71 Aligned_cols=15 Identities=13% Similarity=0.233 Sum_probs=6.5
Q ss_pred HHHHHhhccHHHHHH
Q psy14063 22 VETDLKALEPELRKA 36 (531)
Q Consensus 22 ~e~~~~~Le~~~~~a 36 (531)
+..+...|...++.+
T Consensus 20 L~~en~kL~~~ve~~ 34 (193)
T PF14662_consen 20 LADENAKLQRSVETA 34 (193)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 111
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=94.40 E-value=8.6 Score=41.22 Aligned_cols=30 Identities=17% Similarity=0.071 Sum_probs=11.6
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy14063 55 QYERYVNMKNLGEHETKVQQMEQELTANLE 84 (531)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (531)
|..+......+..+.........++..+.-
T Consensus 167 ~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ 196 (563)
T TIGR00634 167 YQAWLKARQQLKDRQQKEQELAQRLDFLQF 196 (563)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333333444433333333333333333
No 112
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=94.39 E-value=8.6 Score=41.20 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=11.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q psy14063 62 MKNLGEHETKVQQMEQELTANLE 84 (531)
Q Consensus 62 ~~~~~~~~~~~~~~~~~l~~~~~ 84 (531)
.........+++.++-++.+++.
T Consensus 181 ~~~~~~~~~eld~L~~ql~ELe~ 203 (563)
T TIGR00634 181 QQKEQELAQRLDFLQFQLEELEE 203 (563)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHh
Confidence 33344444555555555555544
No 113
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.24 E-value=4.6 Score=37.48 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14063 478 LEVKEKRLASLETELRIL 495 (531)
Q Consensus 478 l~~l~~~~~~l~~~~~~~ 495 (531)
++.|...=.+|...+.++
T Consensus 280 ~dQLK~qNQEL~ski~EL 297 (307)
T PF10481_consen 280 LDQLKAQNQELRSKINEL 297 (307)
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 333433333444443333
No 114
>KOG0962|consensus
Probab=94.22 E-value=13 Score=42.68 Aligned_cols=39 Identities=13% Similarity=0.294 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 184 SEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQ 222 (531)
Q Consensus 184 ~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~ 222 (531)
++...+......+..+...+.....++..++..++.++.
T Consensus 1041 ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1041 EERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444444444444444444444444443
No 115
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.06 E-value=1.3 Score=43.36 Aligned_cols=78 Identities=24% Similarity=0.342 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14063 149 KKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRS 226 (531)
Q Consensus 149 ~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~ 226 (531)
..+..+..++..++.+...+..++..++.+...+..++..++.+...+..+....-.....+..++.........+..
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~ 120 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKN 120 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555444444444444444444444444444333
No 116
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.01 E-value=1.2 Score=40.37 Aligned_cols=19 Identities=21% Similarity=0.169 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14063 197 TREEAKLLDQVEKLAREVS 215 (531)
Q Consensus 197 ~~~~~~~~~~l~~l~~~l~ 215 (531)
.+++..++-++..+..++.
T Consensus 150 ~DE~~~L~l~~~~~e~k~~ 168 (194)
T PF08614_consen 150 QDELQALQLQLNMLEEKLR 168 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 117
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.83 E-value=8.1 Score=38.82 Aligned_cols=84 Identities=14% Similarity=0.209 Sum_probs=39.9
Q ss_pred hhhHHHHHHHhhccHHHHHHHHHHHHHHHHH----HHHHH--HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy14063 17 TRVQLVETDLKALEPELRKAVNFLELENCVQ----RKHNE--IYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCT 90 (531)
Q Consensus 17 ~~~~~~e~~~~~Le~~~~~a~~~~~~~~~l~----~l~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (531)
+.+..++.+...|...+.+|.+..+..+.+. .++.- .+...+...+.+....-..++.+..++..-+++++.+.
T Consensus 271 ~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~ 350 (622)
T COG5185 271 TDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQ 350 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666677777666655544333333 33211 12333344444444444444444444444444444444
Q ss_pred HHHHHHHHHH
Q psy14063 91 DEMESAKSEL 100 (531)
Q Consensus 91 ~~~~~~~~~~ 100 (531)
..++.+...+
T Consensus 351 ~~~d~L~~q~ 360 (622)
T COG5185 351 SNIDELHKQL 360 (622)
T ss_pred hhHHHHHHHH
Confidence 4444444433
No 118
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.77 E-value=6.3 Score=37.33 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=25.8
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy14063 57 ERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTV 103 (531)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 103 (531)
.+..+-.++..++.+-..+..++..-....+.++.+++++...+..+
T Consensus 57 Ti~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaA 103 (305)
T PF14915_consen 57 TIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAA 103 (305)
T ss_pred HHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555556666666666655544
No 119
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.63 E-value=9.6 Score=39.04 Aligned_cols=7 Identities=14% Similarity=0.325 Sum_probs=2.9
Q ss_pred ccccccc
Q psy14063 246 ILGRLGD 252 (531)
Q Consensus 246 v~g~l~~ 252 (531)
+-|.+..
T Consensus 278 ~dG~V~~ 284 (423)
T TIGR01843 278 VDGTVQS 284 (423)
T ss_pred CCcEEEE
Confidence 3344443
No 120
>KOG0243|consensus
Probab=93.56 E-value=8.1 Score=43.22 Aligned_cols=12 Identities=17% Similarity=0.628 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy14063 70 TKVQQMEQELTA 81 (531)
Q Consensus 70 ~~~~~~~~~l~~ 81 (531)
.+++.++..+..
T Consensus 411 ~EIerLK~dl~A 422 (1041)
T KOG0243|consen 411 EEIERLKRDLAA 422 (1041)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 121
>KOG0249|consensus
Probab=93.51 E-value=6.5 Score=41.63 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=7.9
Q ss_pred HhhhhhhHHHHHHHHHHHH
Q psy14063 61 NMKNLGEHETKVQQMEQEL 79 (531)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~l 79 (531)
++.+...+...++-++.++
T Consensus 110 ~eekn~slqerLelaE~~l 128 (916)
T KOG0249|consen 110 NEEKNRSLQERLELAEPKL 128 (916)
T ss_pred hHHhhhhhhHHHHHhhHhh
Confidence 3444444444444444433
No 122
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=93.41 E-value=2.9 Score=37.43 Aligned_cols=97 Identities=19% Similarity=0.284 Sum_probs=59.8
Q ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 127 RFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQ 206 (531)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~ 206 (531)
..++..++..+.....++...-..|-.++..+......+...+..+..+.........++.....++.....+..-++..
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrek 88 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREK 88 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhh
Confidence 55556666666666666666666666666666666666666666666666666666666666666666666665556666
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy14063 207 VEKLAREVSEKRESMQT 223 (531)
Q Consensus 207 l~~l~~~l~~~~~~~~~ 223 (531)
+..+..++..++..+..
T Consensus 89 l~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 89 LGQLEAELAELREELAC 105 (202)
T ss_pred hhhhHHHHHHHHHHHHh
Confidence 66666666555555443
No 123
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.23 E-value=8.8 Score=37.42 Aligned_cols=8 Identities=25% Similarity=0.530 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q psy14063 208 EKLAREVS 215 (531)
Q Consensus 208 ~~l~~~l~ 215 (531)
.++..++.
T Consensus 249 ~e~~~~I~ 256 (312)
T smart00787 249 SELNTEIA 256 (312)
T ss_pred HHHHHHHH
Confidence 33333333
No 124
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=93.15 E-value=0.026 Score=63.00 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 182 MESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRES 220 (531)
Q Consensus 182 ~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~ 220 (531)
++.+..++...+.++...+.........+...+..++..
T Consensus 466 LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e 504 (859)
T PF01576_consen 466 LEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQE 504 (859)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333334333333
No 125
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.10 E-value=0.026 Score=61.96 Aligned_cols=38 Identities=11% Similarity=0.207 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy14063 63 KNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSEL 100 (531)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 100 (531)
.+++.++.++..+...+..++..+..+..++..++.+.
T Consensus 246 ~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~ 283 (713)
T PF05622_consen 246 AQLRRLREELERLEEQRDDLKIELEELEKEIDELRQEN 283 (713)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333334444444444433
No 126
>PRK11281 hypothetical protein; Provisional
Probab=92.81 E-value=23 Score=40.99 Aligned_cols=68 Identities=9% Similarity=0.160 Sum_probs=30.7
Q ss_pred hhHHHHHHHhhccHHHHHH-HHHHHHHHHHHHHHHH--------HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q psy14063 18 RVQLVETDLKALEPELRKA-VNFLELENCVQRKHNE--------IYQYERYVNMKNLGEHETKVQQMEQELTANLES 85 (531)
Q Consensus 18 ~~~~~e~~~~~Le~~~~~a-~~~~~~~~~l~~l~~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (531)
+.+..+++.+.|++..+.| .+..+...++..++.. ....-..+.+..+......+...++.+......
T Consensus 74 qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~Nsq 150 (1113)
T PRK11281 74 KIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQ 150 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455555566666665 4444444445544331 111112334444444444444444444444443
No 127
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=92.77 E-value=23 Score=40.89 Aligned_cols=27 Identities=11% Similarity=0.166 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 195 DLTREEAKLLDQVEKLAREVSEKRESM 221 (531)
Q Consensus 195 ~l~~~~~~~~~~l~~l~~~l~~~~~~~ 221 (531)
.+..+....+..+.++.+..+.++.++
T Consensus 283 ~l~~~~~~~~~~l~~~~q~~~~i~eQi 309 (1109)
T PRK10929 283 LIASQQRQAASQTLQVRQALNTLREQS 309 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444443
No 128
>KOG0978|consensus
Probab=92.73 E-value=17 Score=39.23 Aligned_cols=98 Identities=14% Similarity=0.137 Sum_probs=41.5
Q ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy14063 127 RFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQ-------TTLTERKTLCEELTTRVPAMESEIAESRARLADLTRE 199 (531)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e-------~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~ 199 (531)
..+...+...+..+..........|..++.....+. .++......++..+....++...+..++.++......
T Consensus 502 ~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~ 581 (698)
T KOG0978|consen 502 REEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAK 581 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333333333333433333333333 3333333344444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14063 200 EAKLLDQVEKLAREVSEKRESMQTS 224 (531)
Q Consensus 200 ~~~~~~~l~~l~~~l~~~~~~~~~~ 224 (531)
+.+++..+.....++.........+
T Consensus 582 le~i~~~~~e~~~ele~~~~k~~rl 606 (698)
T KOG0978|consen 582 LEQIQEQYAELELELEIEKFKRKRL 606 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443333
No 129
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.62 E-value=7.7 Score=35.93 Aligned_cols=64 Identities=11% Similarity=0.203 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 154 LEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEK 217 (531)
Q Consensus 154 ~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~ 217 (531)
+..+++.+..+-....+++..+...+..++..+.....+.......+..+..++..+..+++++
T Consensus 37 ~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 37 YRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333443333333333333333333334444444444433
No 130
>PRK11281 hypothetical protein; Provisional
Probab=92.51 E-value=25 Score=40.69 Aligned_cols=18 Identities=11% Similarity=0.309 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14063 204 LDQVEKLAREVSEKRESM 221 (531)
Q Consensus 204 ~~~l~~l~~~l~~~~~~~ 221 (531)
+..++++.+..+.++.++
T Consensus 312 ~~~l~~~~q~~~~i~eqi 329 (1113)
T PRK11281 312 KNWLDRLTQSERNIKEQI 329 (1113)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 131
>KOG4360|consensus
Probab=91.86 E-value=14 Score=37.69 Aligned_cols=15 Identities=7% Similarity=-0.272 Sum_probs=8.5
Q ss_pred HHHHHHHHhhhhhhH
Q psy14063 54 YQYERYVNMKNLGEH 68 (531)
Q Consensus 54 ~~~~~~~~~~~~~~~ 68 (531)
+|-.+..+...+...
T Consensus 109 ~~d~vvql~hels~k 123 (596)
T KOG4360|consen 109 PWDRVVQLGHELSRK 123 (596)
T ss_pred hHHHHHHhhhhhhhh
Confidence 566666666554443
No 132
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.80 E-value=13 Score=36.02 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=5.4
Q ss_pred HHHHHHHhhccHHHH
Q psy14063 20 QLVETDLKALEPELR 34 (531)
Q Consensus 20 ~~~e~~~~~Le~~~~ 34 (531)
..+-++++.=..+.+
T Consensus 12 ~IL~~eLe~cq~ErD 26 (319)
T PF09789_consen 12 LILSQELEKCQSERD 26 (319)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 133
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.42 E-value=7 Score=32.07 Aligned_cols=10 Identities=40% Similarity=0.634 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy14063 206 QVEKLAREVS 215 (531)
Q Consensus 206 ~l~~l~~~l~ 215 (531)
.+++++..+.
T Consensus 97 ~veEL~~Dv~ 106 (120)
T PF12325_consen 97 EVEELRADVQ 106 (120)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 134
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.41 E-value=11 Score=34.25 Aligned_cols=76 Identities=18% Similarity=0.203 Sum_probs=30.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 141 LSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAES-RARLADLTREEAKLLDQVEKLAREVSE 216 (531)
Q Consensus 141 ~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l-~~~~~~l~~~~~~~~~~l~~l~~~l~~ 216 (531)
+.++...+.++..++-+.+.++..+..++.+..++.......-..+.+- .-+---++..+..+...++....++.+
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~e 168 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNE 168 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444443333333332221 111122344444444444444444443
No 135
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=91.36 E-value=17 Score=36.27 Aligned_cols=74 Identities=23% Similarity=0.341 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 148 TKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESM 221 (531)
Q Consensus 148 ~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~ 221 (531)
...+..++..+...+..+...+.++..++..+..+..++.....+...++.+......++.....-+..+....
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~ 293 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEK 293 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchh
Confidence 44444444444444444444444444444444444444444444444444444444444444444443333333
No 136
>PRK10869 recombination and repair protein; Provisional
Probab=91.33 E-value=23 Score=37.83 Aligned_cols=29 Identities=10% Similarity=0.035 Sum_probs=11.6
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy14063 55 QYERYVNMKNLGEHETKVQQMEQELTANL 83 (531)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (531)
|..+....+++..+........+++..+.
T Consensus 163 y~~~~~~~~~l~~l~~~~~~~~~~~d~l~ 191 (553)
T PRK10869 163 YQLWHQSCRDLAQHQQQSQERAARKQLLQ 191 (553)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33444444444444444333333333333
No 137
>PF13514 AAA_27: AAA domain
Probab=91.18 E-value=36 Score=39.89 Aligned_cols=32 Identities=19% Similarity=0.410 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14063 71 KVQQMEQELTANLESIKKCTDEMESAKSELKT 102 (531)
Q Consensus 71 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 102 (531)
.+..+...+..++..+..+...+..+...+..
T Consensus 802 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ 833 (1111)
T PF13514_consen 802 ERERLQEQLEELEEELEQAEEELEELEAELAE 833 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444433
No 138
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.18 E-value=22 Score=37.32 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=4.7
Q ss_pred CcEEecchHH
Q psy14063 272 NYIVTETVEA 281 (531)
Q Consensus 272 ~~ivv~~~~~ 281 (531)
+-+.|.++..
T Consensus 546 Dvi~v~~~sG 555 (652)
T COG2433 546 DVILVEDPSG 555 (652)
T ss_pred cEEEEEcCCC
Confidence 4455554433
No 139
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.87 E-value=6 Score=35.95 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 196 LTREEAKLLDQVEKLAREVSEKRESMQ 222 (531)
Q Consensus 196 l~~~~~~~~~~l~~l~~~l~~~~~~~~ 222 (531)
+..+..++..++..++.+.+.++.++.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 140
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.69 E-value=36 Score=38.96 Aligned_cols=6 Identities=0% Similarity=0.113 Sum_probs=2.6
Q ss_pred ccCcch
Q psy14063 255 GIDQKY 260 (531)
Q Consensus 255 ~v~~~y 260 (531)
.+++.+
T Consensus 466 ~l~~~~ 471 (908)
T COG0419 466 ELPEEH 471 (908)
T ss_pred CCCcHH
Confidence 344444
No 141
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.66 E-value=15 Score=35.52 Aligned_cols=8 Identities=38% Similarity=0.447 Sum_probs=4.6
Q ss_pred HHHHHHhc
Q psy14063 262 IAVSTACG 269 (531)
Q Consensus 262 ~Aie~~lg 269 (531)
..|.++||
T Consensus 195 ~~isaALg 202 (302)
T PF10186_consen 195 EEISAALG 202 (302)
T ss_pred HHHHHHHH
Confidence 35566666
No 142
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.54 E-value=6.8 Score=35.60 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 182 MESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRES 220 (531)
Q Consensus 182 ~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~ 220 (531)
....+.+++.+..+++.++..++.++..++.+++.++..
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555555555555555555543
No 143
>KOG1937|consensus
Probab=90.30 E-value=21 Score=35.78 Aligned_cols=35 Identities=14% Similarity=0.322 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 183 ESEIAESRARLADLTREEAKLLDQVEKLAREVSEK 217 (531)
Q Consensus 183 ~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~ 217 (531)
...+.++-..+.+....+..+..+-.+++.+++..
T Consensus 388 tqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~ 422 (521)
T KOG1937|consen 388 TQRIKEIDGNIRKQEQDIVKILEETRELQKQENSE 422 (521)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444333333
No 144
>KOG0999|consensus
Probab=90.28 E-value=24 Score=36.35 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=7.7
Q ss_pred HHhhhhhhHHHHHHHHHHHH
Q psy14063 60 VNMKNLGEHETKVQQMEQEL 79 (531)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~l 79 (531)
+.+..+.....+++..++-+
T Consensus 54 Eleaeyd~~R~Eldqtkeal 73 (772)
T KOG0999|consen 54 ELEAEYDLARTELDQTKEAL 73 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444333333
No 145
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.18 E-value=21 Score=35.55 Aligned_cols=9 Identities=33% Similarity=0.232 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q psy14063 41 ELENCVQRK 49 (531)
Q Consensus 41 ~~~~~l~~l 49 (531)
+|+-++.+.
T Consensus 195 eWklEvERV 203 (359)
T PF10498_consen 195 EWKLEVERV 203 (359)
T ss_pred HHHHHHHHH
Confidence 455454444
No 146
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.09 E-value=8.1 Score=36.51 Aligned_cols=7 Identities=43% Similarity=0.823 Sum_probs=3.6
Q ss_pred CCceeEE
Q psy14063 294 VGRVNVI 300 (531)
Q Consensus 294 ~gr~tfl 300 (531)
+||+.++
T Consensus 189 lGr~~l~ 195 (251)
T PF11932_consen 189 LGRVALY 195 (251)
T ss_pred ecchhhe
Confidence 4655543
No 147
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=89.74 E-value=34 Score=37.28 Aligned_cols=10 Identities=50% Similarity=0.674 Sum_probs=5.8
Q ss_pred cchHHHHHHH
Q psy14063 258 QKYDIAVSTA 267 (531)
Q Consensus 258 ~~y~~Aie~~ 267 (531)
-+|..|+.-+
T Consensus 359 ~Ky~vav~Ev 368 (717)
T PF09730_consen 359 CKYKVAVSEV 368 (717)
T ss_pred HHHHHHHHHH
Confidence 3566666554
No 148
>KOG0962|consensus
Probab=88.96 E-value=51 Score=38.22 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=10.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy14063 63 KNLGEHETKVQQMEQELTANLESIKKC 89 (531)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (531)
.++...+.+..+++.++....+++..+
T Consensus 230 ~ki~~~ke~v~e~e~e~~~~~~~i~ei 256 (1294)
T KOG0962|consen 230 RKIEKSKEEVSELENELGPIEAKIEEI 256 (1294)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333333333333333333333333333
No 149
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=88.94 E-value=0.12 Score=56.83 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy14063 66 GEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTV 103 (531)
Q Consensus 66 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 103 (531)
..++.+++.++.++...+.........++.+..++..+
T Consensus 242 ~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L 279 (713)
T PF05622_consen 242 ADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDEL 279 (713)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333444444444443333
No 150
>PRK12704 phosphodiesterase; Provisional
Probab=88.85 E-value=34 Score=36.10 Aligned_cols=9 Identities=33% Similarity=0.209 Sum_probs=6.9
Q ss_pred HHHHHHHhc
Q psy14063 261 DIAVSTACG 269 (531)
Q Consensus 261 ~~Aie~~lg 269 (531)
-.++|++.|
T Consensus 233 ir~~e~~tg 241 (520)
T PRK12704 233 IRALETLTG 241 (520)
T ss_pred HHHHHHHhC
Confidence 358888888
No 151
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=88.54 E-value=36 Score=35.89 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=10.7
Q ss_pred HhHHhhhhHHHHHHHhhccHHHH
Q psy14063 12 RTEKLTRVQLVETDLKALEPELR 34 (531)
Q Consensus 12 ~~~~~~~~~~~e~~~~~Le~~~~ 34 (531)
+...-..++.+.+++..++....
T Consensus 159 ~~~~y~~w~~~~~~l~~~~~~~~ 181 (557)
T COG0497 159 YQEAYQAWKQARRELEDLQEKER 181 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555544444443
No 152
>KOG2751|consensus
Probab=88.40 E-value=21 Score=35.74 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 160 KVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESM 221 (531)
Q Consensus 160 ~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~ 221 (531)
.+...+..++.+-.++...+.+++.+-.++.++....+++......+.-+.+.++..+..+.
T Consensus 194 ~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~ 255 (447)
T KOG2751|consen 194 RLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQI 255 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Confidence 33333444444444444444444444444545555555555544444444444444444443
No 153
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.37 E-value=19 Score=32.63 Aligned_cols=71 Identities=21% Similarity=0.312 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 152 ADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTRE--------EAKLLDQVEKLAREVSEKRESMQ 222 (531)
Q Consensus 152 ~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~--------~~~~~~~l~~l~~~l~~~~~~~~ 222 (531)
..++.++...+..+..+.-+.+.+...+..++.+..++...+...-.+ .--++..+..+...+.....++.
T Consensus 89 ~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~ 167 (201)
T PF13851_consen 89 QNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLN 167 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444443332222 22234444444444444444443
No 154
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=88.11 E-value=8.7 Score=34.50 Aligned_cols=43 Identities=30% Similarity=0.386 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 163 TTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLD 205 (531)
Q Consensus 163 ~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~ 205 (531)
.++++...+..++-..+..++.+++..+.++..++.+.+.++.
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE 184 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEE 184 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333
No 155
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=87.89 E-value=28 Score=33.88 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14063 203 LLDQVEKLAREVSEKRESM 221 (531)
Q Consensus 203 ~~~~l~~l~~~l~~~~~~~ 221 (531)
+..++.+++.+..-+++.+
T Consensus 201 L~erl~q~qeE~~l~k~~i 219 (319)
T PF09789_consen 201 LKERLKQLQEEKELLKQTI 219 (319)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333333
No 156
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=87.88 E-value=19 Score=33.71 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=16.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy14063 64 NLGEHETKVQQMEQELTANLESIKKCTDEMESAKSE 99 (531)
Q Consensus 64 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 99 (531)
-++.++.++.+.++++.+-+.+|.++..++-.+++.
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrED 104 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMRED 104 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344445555544444444444444444444444433
No 157
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=87.75 E-value=60 Score=37.59 Aligned_cols=28 Identities=11% Similarity=-0.066 Sum_probs=13.0
Q ss_pred HHHHHHhhccHHHHHH-HHHHHHHHHHHH
Q psy14063 21 LVETDLKALEPELRKA-VNFLELENCVQR 48 (531)
Q Consensus 21 ~~e~~~~~Le~~~~~a-~~~~~~~~~l~~ 48 (531)
....+.+.+++..+.+ .+..++++++..
T Consensus 62 ~~~~~~~~~~~~i~~ap~~~~~~~~~l~~ 90 (1109)
T PRK10929 62 GSLERAKQYQQVIDNFPKLSAELRQQLNN 90 (1109)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3344445555555554 333444444443
No 158
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=87.73 E-value=29 Score=33.90 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=5.6
Q ss_pred HHHHHHHHhHHHHH
Q psy14063 81 ANLESIKKCTDEME 94 (531)
Q Consensus 81 ~~~~~~~~~~~~~~ 94 (531)
.+..+++.+...++
T Consensus 139 ~L~eKlK~l~eQye 152 (309)
T PF09728_consen 139 ELREKLKSLIEQYE 152 (309)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444333
No 159
>KOG0249|consensus
Probab=87.65 E-value=43 Score=35.87 Aligned_cols=6 Identities=50% Similarity=0.545 Sum_probs=2.1
Q ss_pred ccHHHH
Q psy14063 29 LEPELR 34 (531)
Q Consensus 29 Le~~~~ 34 (531)
++....
T Consensus 33 ~e~~~~ 38 (916)
T KOG0249|consen 33 LEHSLP 38 (916)
T ss_pred HHhhhh
Confidence 333333
No 160
>KOG0288|consensus
Probab=87.59 E-value=32 Score=34.24 Aligned_cols=14 Identities=7% Similarity=0.135 Sum_probs=6.8
Q ss_pred cCcchHHHHHHHhc
Q psy14063 256 IDQKYDIAVSTACG 269 (531)
Q Consensus 256 v~~~y~~Aie~~lg 269 (531)
+|..-..++++..|
T Consensus 163 lpS~~~~~ld~h~g 176 (459)
T KOG0288|consen 163 LPSRALFVLDAHEG 176 (459)
T ss_pred cchhhhhhhhcccc
Confidence 34444445555554
No 161
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.56 E-value=16 Score=38.35 Aligned_cols=6 Identities=33% Similarity=0.379 Sum_probs=2.9
Q ss_pred CCceeE
Q psy14063 294 VGRVNV 299 (531)
Q Consensus 294 ~gr~tf 299 (531)
-|.+.+
T Consensus 544 ~GDvi~ 549 (652)
T COG2433 544 EGDVIL 549 (652)
T ss_pred cCcEEE
Confidence 355544
No 162
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.98 E-value=48 Score=35.66 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=19.6
Q ss_pred cccccccC-cchHHHHHHHhc--cCCcEE
Q psy14063 250 LGDLGGID-QKYDIAVSTACG--ALNYIV 275 (531)
Q Consensus 250 l~~li~v~-~~y~~Aie~~lg--~l~~iv 275 (531)
.|++|+++ ..|+.+++..|| .+.-+|
T Consensus 470 AGELI~~~~~~WE~~~qRiL~GF~~~mLV 498 (1104)
T COG4913 470 AGELIDPNNAEWEPVVQRILGGFAAEMLV 498 (1104)
T ss_pred cccccCCCcccchHHHHHHhhhchhhhcc
Confidence 57888884 589999999998 444443
No 163
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=86.82 E-value=24 Score=33.15 Aligned_cols=42 Identities=14% Similarity=0.065 Sum_probs=18.0
Q ss_pred HHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy14063 55 QYERYVNMKNLGEH-ETKVQQMEQELTANLESIKKCTDEMESA 96 (531)
Q Consensus 55 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 96 (531)
|.++.++..++.-. -.-+..-+.++.-+-.+.+.+..++...
T Consensus 29 wk~me~~q~kL~l~~~e~l~~s~~ql~ll~~~~k~L~aE~~qw 71 (268)
T PF11802_consen 29 WKDMEECQNKLSLIGTETLTDSDAQLSLLMMRVKCLTAELEQW 71 (268)
T ss_pred HHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 66666555555333 1122222333333444444444444443
No 164
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=86.77 E-value=9.9 Score=34.16 Aligned_cols=69 Identities=20% Similarity=0.205 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 152 ADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRES 220 (531)
Q Consensus 152 ~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~ 220 (531)
..++..++....+-..+..++.+++.+++..+.++..+..+...+...+..+-.++..++.++.++...
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 333333333333444444444444444444444444444444444444444444455555555544433
No 165
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=86.70 E-value=48 Score=35.37 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 483 KRLASLETELRILSQQKMEVETQ 505 (531)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~~~~~~ 505 (531)
-++..+..++..+..++..-..+
T Consensus 746 ~ELs~lk~el~slK~QLk~e~~e 768 (786)
T PF05483_consen 746 LELSNLKNELSSLKKQLKTERTE 768 (786)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Confidence 33444444444444444333333
No 166
>PRK10869 recombination and repair protein; Provisional
Probab=86.65 E-value=49 Score=35.38 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14063 68 HETKVQQMEQELTANLE 84 (531)
Q Consensus 68 ~~~~~~~~~~~l~~~~~ 84 (531)
...+++.++-++.+++.
T Consensus 183 ~~~~~d~l~fql~Ei~~ 199 (553)
T PRK10869 183 RAARKQLLQYQLKELNE 199 (553)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444444444433
No 167
>PF13514 AAA_27: AAA domain
Probab=86.34 E-value=76 Score=37.30 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14063 68 HETKVQQMEQELTANL 83 (531)
Q Consensus 68 ~~~~~~~~~~~l~~~~ 83 (531)
+...+..++..+..+.
T Consensus 748 ~~~ri~~~~~~~~~f~ 763 (1111)
T PF13514_consen 748 LRRRIEQMEADLAAFE 763 (1111)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 168
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=86.31 E-value=30 Score=32.70 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14063 38 NFLELENCVQRKHNEIYQYERYVNM 62 (531)
Q Consensus 38 ~~~~~~~~l~~l~~~l~~~~~~~~~ 62 (531)
.|.-.+..++.--.+||.++-+-.+
T Consensus 58 ~~~~tKa~IKLN~KkLY~ADGyAVk 82 (267)
T PF10234_consen 58 EFMATKARIKLNPKKLYQADGYAVK 82 (267)
T ss_pred HHHHHHhheeecHHHHHHhhHHHHH
Confidence 3444444444444555555544433
No 169
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=86.27 E-value=29 Score=32.48 Aligned_cols=17 Identities=6% Similarity=0.368 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14063 205 DQVEKLAREVSEKRESM 221 (531)
Q Consensus 205 ~~l~~l~~~l~~~~~~~ 221 (531)
.++..+...+..++..+
T Consensus 192 ~~~~~l~~~l~~Lq~~l 208 (240)
T PF12795_consen 192 ARIQRLQQQLQALQNLL 208 (240)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 170
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.24 E-value=21 Score=30.71 Aligned_cols=51 Identities=20% Similarity=0.298 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 152 ADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAK 202 (531)
Q Consensus 152 ~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~ 202 (531)
..+..++..+...+..++..+..++.++...+.....+...+..+...+..
T Consensus 62 ~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~ 112 (151)
T PF11559_consen 62 RRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ 112 (151)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333
No 171
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=86.18 E-value=33 Score=33.02 Aligned_cols=16 Identities=13% Similarity=0.381 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHcCCCc
Q psy14063 281 AGEAVIAAVKRQNVGR 296 (531)
Q Consensus 281 ~a~~~i~~Lk~~~~gr 296 (531)
+.+.+.+-|++.++|-
T Consensus 284 dcRrLfDsLreEnlgm 299 (401)
T PF06785_consen 284 DCRRLFDSLREENLGM 299 (401)
T ss_pred HHHHHHhhhcccccce
Confidence 3445555566555553
No 172
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=86.06 E-value=30 Score=32.40 Aligned_cols=10 Identities=30% Similarity=0.571 Sum_probs=3.6
Q ss_pred HHHHhHHHHH
Q psy14063 85 SIKKCTDEME 94 (531)
Q Consensus 85 ~~~~~~~~~~ 94 (531)
.+..+..++.
T Consensus 53 ~~~~l~~~l~ 62 (240)
T PF12795_consen 53 EIRELQKELE 62 (240)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 173
>KOG0804|consensus
Probab=85.90 E-value=42 Score=33.88 Aligned_cols=12 Identities=8% Similarity=0.365 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy14063 206 QVEKLAREVSEK 217 (531)
Q Consensus 206 ~l~~l~~~l~~~ 217 (531)
.+..++.+++++
T Consensus 436 ~I~dLqEQlrDl 447 (493)
T KOG0804|consen 436 KITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHhH
Confidence 333333333333
No 174
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=85.82 E-value=51 Score=34.81 Aligned_cols=30 Identities=17% Similarity=0.209 Sum_probs=17.3
Q ss_pred HHHHHHHhc-cC--C----cEEecch-----HHHHHHHHHHH
Q psy14063 261 DIAVSTACG-AL--N----YIVTETV-----EAGEAVIAAVK 290 (531)
Q Consensus 261 ~~Aie~~lg-~l--~----~ivv~~~-----~~a~~~i~~Lk 290 (531)
-.++|++.| .+ + .+|+.+. +.|+..++.|-
T Consensus 227 ir~~e~~tgvd~iiddtp~~v~ls~fdp~rreia~~~l~~li 268 (514)
T TIGR03319 227 IRALETLTGVDLIIDDTPEAVILSGFDPVRREIARMALEKLI 268 (514)
T ss_pred HHHHHHHhCceEEEcCCCCeEEecCCchHHHHHHHHHHHHHH
Confidence 358888888 43 2 5555543 44555555553
No 175
>KOG1899|consensus
Probab=85.66 E-value=42 Score=35.31 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=11.1
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy14063 58 RYVNMKNLGEHETKVQQMEQELTANLE 84 (531)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (531)
|.....+|+.++.-++...++|...++
T Consensus 134 VeaQgEKIrDLE~cie~kr~kLnatEE 160 (861)
T KOG1899|consen 134 VEAQGEKIRDLETCIEEKRNKLNATEE 160 (861)
T ss_pred HHHhhhhHHHHHHHHHHHHhhhchHHH
Confidence 333334444444444444444443333
No 176
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=85.51 E-value=21 Score=30.18 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14063 195 DLTREEAKLLDQVEKLAREVSE 216 (531)
Q Consensus 195 ~l~~~~~~~~~~l~~l~~~l~~ 216 (531)
.+...+..+...+..+..+++.
T Consensus 105 ~l~~~~~~l~~~l~~~~~~~~~ 126 (140)
T PRK03947 105 ELEKALEKLEEALQKLASRIAQ 126 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 177
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=85.50 E-value=1.8 Score=41.69 Aligned_cols=81 Identities=15% Similarity=0.277 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14063 144 QSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQT 223 (531)
Q Consensus 144 ~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~ 223 (531)
+.+....|..+...+..++..+..+...+..+...+......+..++..+..+...+..++..+....-.+..++.+++.
T Consensus 72 l~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~ 151 (326)
T PF04582_consen 72 LADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKA 151 (326)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHH
Confidence 33333333344444444444444444444444444444444444444444444444445555555555555555554444
Q ss_pred h
Q psy14063 224 S 224 (531)
Q Consensus 224 ~ 224 (531)
+
T Consensus 152 L 152 (326)
T PF04582_consen 152 L 152 (326)
T ss_dssp H
T ss_pred H
Confidence 3
No 178
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=85.34 E-value=6.3 Score=43.64 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=9.3
Q ss_pred chHHHHHHHhc-cCC
Q psy14063 259 KYDIAVSTACG-ALN 272 (531)
Q Consensus 259 ~y~~Aie~~lg-~l~ 272 (531)
.|..||-..+| .+.
T Consensus 635 eFr~av~~llGyki~ 649 (722)
T PF05557_consen 635 EFREAVYSLLGYKID 649 (722)
T ss_dssp HHHHHHHHHHSEEEE
T ss_pred HHHHHHHHHhcceee
Confidence 46677777787 444
No 179
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=85.06 E-value=58 Score=34.79 Aligned_cols=27 Identities=4% Similarity=0.011 Sum_probs=11.7
Q ss_pred HHHHHhHHhhhhHHHHHHHhhccHHHH
Q psy14063 8 YDEERTEKLTRVQLVETDLKALEPELR 34 (531)
Q Consensus 8 l~~~~~~~~~~~~~~e~~~~~Le~~~~ 34 (531)
..+-+.++.+.++.+......|.-+++
T Consensus 181 T~qly~~l~~niekMi~aFEeLR~qAE 207 (786)
T PF05483_consen 181 TRQLYMDLNENIEKMIAAFEELRVQAE 207 (786)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444
No 180
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=84.92 E-value=35 Score=32.12 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 185 EIAESRARLADLTREEAKLLDQVEKLAREV 214 (531)
Q Consensus 185 ~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l 214 (531)
++..+...+..+.............++.++
T Consensus 83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el 112 (246)
T PF00769_consen 83 ELREAEAEIARLEEESERKEEEAEELQEEL 112 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 181
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=84.88 E-value=44 Score=33.27 Aligned_cols=53 Identities=17% Similarity=0.332 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 163 TTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVS 215 (531)
Q Consensus 163 ~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~ 215 (531)
..+...+..+...+..+..++..+..+..+++....+...++.++...+..+.
T Consensus 228 ~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 228 AELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33333333333333333333333333333333333333333333333333333
No 182
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=83.38 E-value=2.5 Score=40.83 Aligned_cols=105 Identities=18% Similarity=0.259 Sum_probs=20.8
Q ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 127 RFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQ 206 (531)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~ 206 (531)
...+..+...+..+...+......+......+..+...+..++..+..+...+..+...+......+..++..+..+...
T Consensus 48 ~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTd 127 (326)
T PF04582_consen 48 SDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTD 127 (326)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhh
Confidence 33333334444444444444455555555555555555555555555555555555555555566666666666666666
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHH
Q psy14063 207 VEKLAREVSEKRESMQTSRSNNRLI 231 (531)
Q Consensus 207 l~~l~~~l~~~~~~~~~~~~~~~~l 231 (531)
+.+++..+....-.+..++.|...+
T Consensus 128 vsNLksdVSt~aL~ItdLe~RV~~L 152 (326)
T PF04582_consen 128 VSNLKSDVSTQALNITDLESRVKAL 152 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhcchHhhHHHHHHHH
Confidence 6666666666655555555554443
No 183
>KOG0804|consensus
Probab=83.26 E-value=54 Score=33.08 Aligned_cols=9 Identities=11% Similarity=0.538 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy14063 213 EVSEKRESM 221 (531)
Q Consensus 213 ~l~~~~~~~ 221 (531)
++.+++.++
T Consensus 436 ~I~dLqEQl 444 (493)
T KOG0804|consen 436 KITDLQEQL 444 (493)
T ss_pred HHHHHHHHH
Confidence 333333333
No 184
>KOG1853|consensus
Probab=82.26 E-value=41 Score=30.98 Aligned_cols=9 Identities=33% Similarity=0.545 Sum_probs=3.3
Q ss_pred ccccccccc
Q psy14063 441 GAIIEPSGT 449 (531)
Q Consensus 441 g~~~~~~g~ 449 (531)
|.-+..+++
T Consensus 297 gtk~~rs~s 305 (333)
T KOG1853|consen 297 GTKVERSDS 305 (333)
T ss_pred cccccccCc
Confidence 333333333
No 185
>KOG2991|consensus
Probab=81.76 E-value=44 Score=30.92 Aligned_cols=73 Identities=15% Similarity=0.268 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 148 TKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRES 220 (531)
Q Consensus 148 ~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~ 220 (531)
+-+|..+..++..-...-+++....+++..-+.++...++-.+..+--++.++.+.+.+++.+...+....+.
T Consensus 235 ~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqa 307 (330)
T KOG2991|consen 235 EGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQA 307 (330)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544444444555555555555555555555555555555566666666665555555444433
No 186
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=81.62 E-value=69 Score=33.11 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHH
Q psy14063 73 QQMEQELTANLESIKKCTDEM 93 (531)
Q Consensus 73 ~~~~~~l~~~~~~~~~~~~~~ 93 (531)
.-++.++..+..++...+.++
T Consensus 174 ~fl~~ql~~~~~~l~~ae~~l 194 (444)
T TIGR03017 174 LWFVQQIAALREDLARAQSKL 194 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 187
>KOG4302|consensus
Probab=81.45 E-value=83 Score=33.96 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 130 CDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLT 166 (531)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~ 166 (531)
+..+...++.++.+..+...++..+...++.+-..|.
T Consensus 105 l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~ 141 (660)
T KOG4302|consen 105 LESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELG 141 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444445555555555555555555555544443
No 188
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=80.79 E-value=88 Score=33.82 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=22.9
Q ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 127 RFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEEL 175 (531)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l 175 (531)
+.+....+.++.....++.....-+..+++.......-+.++..++.++
T Consensus 997 eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d~ 1045 (1480)
T COG3096 997 EAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDI 1045 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 3333333344444444444444444555555555555555555555444
No 189
>PRK12704 phosphodiesterase; Provisional
Probab=80.73 E-value=81 Score=33.36 Aligned_cols=11 Identities=45% Similarity=0.815 Sum_probs=5.2
Q ss_pred CCC-cccccccc
Q psy14063 243 VSG-ILGRLGDL 253 (531)
Q Consensus 243 ~~g-v~g~l~~l 253 (531)
++| ++|+=|..
T Consensus 221 mkgriigreGrn 232 (520)
T PRK12704 221 MKGRIIGREGRN 232 (520)
T ss_pred hhcceeCCCcch
Confidence 344 55554443
No 190
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=80.65 E-value=1.7 Score=48.13 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=10.1
Q ss_pred hHHHHHHHHhhCCeE
Q psy14063 334 EKIRLAFYFATRETL 348 (531)
Q Consensus 334 ~~~~~~~~~llg~~~ 348 (531)
..|+.+++.+||=.|
T Consensus 634 ~eFr~av~~llGyki 648 (722)
T PF05557_consen 634 QEFREAVYSLLGYKI 648 (722)
T ss_dssp HHHHHHHHHHHSEEE
T ss_pred HHHHHHHHHHhccee
Confidence 467777887877443
No 191
>KOG4809|consensus
Probab=80.50 E-value=76 Score=32.91 Aligned_cols=33 Identities=9% Similarity=-0.018 Sum_probs=13.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy14063 57 ERYVNMKNLGEHETKVQQMEQELTANLESIKKC 89 (531)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (531)
+..+.+..+..+++....+..-+...+.+++.+
T Consensus 353 ~l~eke~sl~dlkehassLas~glk~ds~Lk~l 385 (654)
T KOG4809|consen 353 ELTEKESSLIDLKEHASSLASAGLKRDSKLKSL 385 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence 344444444444444444433333333333333
No 192
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=80.22 E-value=79 Score=32.90 Aligned_cols=15 Identities=7% Similarity=0.377 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy14063 156 ANLEKVQTTLTERKT 170 (531)
Q Consensus 156 ~~i~~~e~~l~~~~~ 170 (531)
.++..++..+.+.+.
T Consensus 243 ~~i~~l~~~i~~~~~ 257 (457)
T TIGR01000 243 QQIDQLQKSIASYQV 257 (457)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 193
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=79.88 E-value=60 Score=31.35 Aligned_cols=8 Identities=38% Similarity=0.580 Sum_probs=3.2
Q ss_pred ecchHHHH
Q psy14063 276 TETVEAGE 283 (531)
Q Consensus 276 v~~~~~a~ 283 (531)
|++...|.
T Consensus 257 ~enie~A~ 264 (401)
T PF06785_consen 257 VENIEAAS 264 (401)
T ss_pred HhhHHHHH
Confidence 34444433
No 194
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=79.71 E-value=50 Score=30.37 Aligned_cols=11 Identities=27% Similarity=0.447 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q psy14063 207 VEKLAREVSEK 217 (531)
Q Consensus 207 l~~l~~~l~~~ 217 (531)
+..+...+.++
T Consensus 121 l~~l~~kl~e~ 131 (221)
T PF04012_consen 121 LEELEAKLEEL 131 (221)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 195
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=79.56 E-value=1.1e+02 Score=34.09 Aligned_cols=32 Identities=3% Similarity=0.210 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy14063 65 LGEHETKVQQMEQELTANLESIKKCTDEMESA 96 (531)
Q Consensus 65 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 96 (531)
......-++-+++++..+..++...+..++..
T Consensus 262 ~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~f 293 (726)
T PRK09841 262 AAQDSQSLEFLQRQLPEVRSELDQAEEKLNVY 293 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444443
No 196
>KOG1899|consensus
Probab=79.22 E-value=90 Score=32.99 Aligned_cols=26 Identities=23% Similarity=0.533 Sum_probs=10.4
Q ss_pred HhhccHHHHHH-HHHHHHHHHHHHHHH
Q psy14063 26 LKALEPELRKA-VNFLELENCVQRKHN 51 (531)
Q Consensus 26 ~~~Le~~~~~a-~~~~~~~~~l~~l~~ 51 (531)
+..|-.+++.- .++.+++--|...++
T Consensus 127 vsvLteqVeaQgEKIrDLE~cie~kr~ 153 (861)
T KOG1899|consen 127 VSVLTEQVEAQGEKIRDLETCIEEKRN 153 (861)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 33333444332 334444444444433
No 197
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=79.20 E-value=63 Score=31.18 Aligned_cols=8 Identities=50% Similarity=0.675 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy14063 192 RLADLTRE 199 (531)
Q Consensus 192 ~~~~l~~~ 199 (531)
.+..+..+
T Consensus 157 ~le~Lr~E 164 (310)
T PF09755_consen 157 ELERLRRE 164 (310)
T ss_pred HHHHHHHH
Confidence 33333333
No 198
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=78.74 E-value=57 Score=30.42 Aligned_cols=29 Identities=7% Similarity=-0.034 Sum_probs=13.3
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q psy14063 57 ERYVNMKNLGEHETKVQQMEQELTANLES 85 (531)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (531)
+....-..+.....-...+++.+..++..
T Consensus 78 e~q~Aa~~yerA~~~h~aAKe~v~laEq~ 106 (239)
T PF05276_consen 78 EAQKAALQYERANSMHAAAKEMVALAEQS 106 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 199
>PRK11519 tyrosine kinase; Provisional
Probab=77.65 E-value=1.2e+02 Score=33.64 Aligned_cols=25 Identities=8% Similarity=0.205 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q psy14063 70 TKVQQMEQELTANLESIKKCTDEME 94 (531)
Q Consensus 70 ~~~~~~~~~l~~~~~~~~~~~~~~~ 94 (531)
.-++-+++++..+..++...+..++
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~ 291 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLN 291 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444443333333333
No 200
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=77.63 E-value=1e+02 Score=32.64 Aligned_cols=6 Identities=17% Similarity=0.124 Sum_probs=2.7
Q ss_pred HHHHHh
Q psy14063 263 AVSTAC 268 (531)
Q Consensus 263 Aie~~l 268 (531)
+++..+
T Consensus 263 ~l~~li 268 (514)
T TIGR03319 263 ALEKLI 268 (514)
T ss_pred HHHHHH
Confidence 444444
No 201
>KOG1853|consensus
Probab=77.50 E-value=60 Score=29.98 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q psy14063 210 LAREVSEKRESM 221 (531)
Q Consensus 210 l~~~l~~~~~~~ 221 (531)
++.+-+++++.+
T Consensus 169 LkdEardlrqel 180 (333)
T KOG1853|consen 169 LKDEARDLRQEL 180 (333)
T ss_pred HHHHHHHHHHHH
Confidence 333334444433
No 202
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=76.90 E-value=44 Score=28.20 Aligned_cols=40 Identities=20% Similarity=0.314 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 178 RVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEK 217 (531)
Q Consensus 178 ~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~ 217 (531)
.+..+..++..+...+..+...+..++..++.+...+..+
T Consensus 95 A~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 95 AIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444433
No 203
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=76.33 E-value=58 Score=29.24 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q psy14063 200 EAKLLDQVEKLAR 212 (531)
Q Consensus 200 ~~~~~~~l~~l~~ 212 (531)
+..+......+..
T Consensus 161 i~~lks~~~~l~~ 173 (190)
T PF05266_consen 161 ISRLKSEAEALKE 173 (190)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 204
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=76.26 E-value=1.1e+02 Score=32.40 Aligned_cols=9 Identities=22% Similarity=0.553 Sum_probs=5.0
Q ss_pred eEEEcCHHH
Q psy14063 347 TLVAQDLNQ 355 (531)
Q Consensus 347 ~~v~~~l~~ 355 (531)
++|+|-+|.
T Consensus 456 tlIFDEVD~ 464 (557)
T COG0497 456 TLIFDEVDT 464 (557)
T ss_pred eEEEecccC
Confidence 466665544
No 205
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=76.15 E-value=71 Score=30.14 Aligned_cols=7 Identities=14% Similarity=0.439 Sum_probs=2.7
Q ss_pred cchHHHH
Q psy14063 258 QKYDIAV 264 (531)
Q Consensus 258 ~~y~~Ai 264 (531)
++|...+
T Consensus 149 ek~r~vl 155 (251)
T PF11932_consen 149 EKFRRVL 155 (251)
T ss_pred HHHHHHH
Confidence 3343333
No 206
>KOG2264|consensus
Probab=75.97 E-value=27 Score=36.13 Aligned_cols=48 Identities=23% Similarity=0.398 Sum_probs=20.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 173 EELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRES 220 (531)
Q Consensus 173 ~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~ 220 (531)
++++.+++++...+++++..+...+.++..++..+++.+.+++++..+
T Consensus 103 qel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 103 QELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 333333333333333444444444444444444444444444444443
No 207
>PRK09343 prefoldin subunit beta; Provisional
Probab=75.76 E-value=44 Score=27.53 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy14063 66 GEHETKVQQMEQELTANLESIKKCTDEMESAKSELK 101 (531)
Q Consensus 66 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (531)
..++.+++.++.++..+++..+.+...+..+...+.
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555544443
No 208
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=74.22 E-value=11 Score=37.87 Aligned_cols=10 Identities=20% Similarity=0.242 Sum_probs=6.3
Q ss_pred eEEEcCHHHH
Q psy14063 347 TLVAQDLNQA 356 (531)
Q Consensus 347 ~~v~~~l~~A 356 (531)
+.++.|+...
T Consensus 282 I~if~DlS~~ 291 (370)
T PF02994_consen 282 IRIFPDLSPE 291 (370)
T ss_dssp EEEECTSTHH
T ss_pred eEEeCCCCHH
Confidence 5677776554
No 209
>KOG1937|consensus
Probab=73.87 E-value=1.1e+02 Score=31.11 Aligned_cols=40 Identities=15% Similarity=0.305 Sum_probs=20.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 176 TTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVS 215 (531)
Q Consensus 176 ~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~ 215 (531)
...+.++...+......+..+..+-.+++.+.+.....++
T Consensus 388 tqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~ 427 (521)
T KOG1937|consen 388 TQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALN 427 (521)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444445555555555555555555555555444
No 210
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=73.63 E-value=16 Score=25.12 Aligned_cols=34 Identities=12% Similarity=0.281 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy14063 480 VKEKRLASLETELRILSQQKMEVETQLNCTGNEL 513 (531)
Q Consensus 480 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 513 (531)
++++++..++..+..++.+..++...++.+.+.+
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443333
No 211
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=73.43 E-value=47 Score=26.78 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 182 MESEIAESRARLADLTREEAKLLDQVEKLAREVS 215 (531)
Q Consensus 182 ~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~ 215 (531)
++.++..+...+..+......++..+.+++..++
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444433
No 212
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=72.83 E-value=1.3e+02 Score=31.46 Aligned_cols=17 Identities=6% Similarity=0.200 Sum_probs=7.1
Q ss_pred HHHHHhHHhhhhHHHHH
Q psy14063 8 YDEERTEKLTRVQLVET 24 (531)
Q Consensus 8 l~~~~~~~~~~~~~~e~ 24 (531)
|-+.+....+||..++.
T Consensus 307 L~qqV~qs~EKIa~LEq 323 (518)
T PF10212_consen 307 LAQQVQQSQEKIAKLEQ 323 (518)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 213
>KOG2264|consensus
Probab=72.53 E-value=39 Score=35.02 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=22.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14063 172 CEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQT 223 (531)
Q Consensus 172 l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~ 223 (531)
+.+++.+..++..++.++..+++++++.+.+.+.++..++..+...+.++.+
T Consensus 95 L~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~E 146 (907)
T KOG2264|consen 95 LTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEE 146 (907)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444433
No 214
>PRK00106 hypothetical protein; Provisional
Probab=72.38 E-value=1.4e+02 Score=31.71 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=17.3
Q ss_pred HHHHHHHhc-cC------CcEEecch-----HHHHHHHHHHH
Q psy14063 261 DIAVSTACG-AL------NYIVTETV-----EAGEAVIAAVK 290 (531)
Q Consensus 261 ~~Aie~~lg-~l------~~ivv~~~-----~~a~~~i~~Lk 290 (531)
-.|+|++.| .+ ..+|+.+. +.|+..++.|-
T Consensus 248 ir~~E~~tGvdliiddtp~~v~lS~fdpvRReiAr~~le~Li 289 (535)
T PRK00106 248 IRTLESLTGIDVIIDDTPEVVVLSGFDPIRREIARMTLESLI 289 (535)
T ss_pred HHHHHHHhCceEEEcCCCCeEEEeCCChHHHHHHHHHHHHHH
Confidence 368888888 43 25555553 34555555543
No 215
>PF13166 AAA_13: AAA domain
Probab=72.07 E-value=1.6e+02 Score=32.52 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 185 EIAESRARLADLTREEAKLLDQVEKLARE 213 (531)
Q Consensus 185 ~l~~l~~~~~~l~~~~~~~~~~l~~l~~~ 213 (531)
.+..+...+..+...+...+..+..+..+
T Consensus 425 ~i~~~~~~~~~~~~~~~~~~~~i~~l~~~ 453 (712)
T PF13166_consen 425 EINSLEKKLKKAKEEIKKIEKEIKELEAQ 453 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444333
No 216
>KOG4403|consensus
Probab=71.24 E-value=1.2e+02 Score=30.53 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=20.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy14063 54 YQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSE 99 (531)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 99 (531)
+|+.|.+++.......+-...+ +.|..++..+..+.+.++..+.+
T Consensus 230 cw~ay~Qnk~akehv~km~kdl-e~Lq~aEqsl~dlQk~Lekar~e 274 (575)
T KOG4403|consen 230 CWFAYRQNKKAKEHVNKMMKDL-EGLQRAEQSLEDLQKRLEKAREE 274 (575)
T ss_pred hhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777766654433332222222 22333344445555555544443
No 217
>PRK00106 hypothetical protein; Provisional
Probab=71.14 E-value=1.5e+02 Score=31.51 Aligned_cols=6 Identities=0% Similarity=0.102 Sum_probs=2.3
Q ss_pred HHHHHh
Q psy14063 263 AVSTAC 268 (531)
Q Consensus 263 Aie~~l 268 (531)
+++..+
T Consensus 284 ~le~Li 289 (535)
T PRK00106 284 TLESLI 289 (535)
T ss_pred HHHHHH
Confidence 334433
No 218
>KOG2751|consensus
Probab=71.00 E-value=93 Score=31.36 Aligned_cols=19 Identities=32% Similarity=0.642 Sum_probs=9.6
Q ss_pred cccccccCcchHHHHHHHhc
Q psy14063 250 LGDLGGIDQKYDIAVSTACG 269 (531)
Q Consensus 250 l~~li~v~~~y~~Aie~~lg 269 (531)
+|.+=.++=+|. -|-+|+|
T Consensus 291 LG~lp~~pVew~-EINAA~G 309 (447)
T KOG2751|consen 291 LGRLPSVPVEWD-EINAAWG 309 (447)
T ss_pred eccccCCCcCHH-HHHHHhh
Confidence 455544555563 4445555
No 219
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=70.80 E-value=74 Score=28.00 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=22.4
Q ss_pred hHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHH
Q psy14063 117 FRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKL 151 (531)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 151 (531)
+..++..+ ++.+..+..+++..+.-+...+.+-
T Consensus 62 l~~qL~aA--EtRCslLEKQLeyMRkmv~~ae~er 94 (178)
T PF14073_consen 62 LSSQLSAA--ETRCSLLEKQLEYMRKMVESAEKER 94 (178)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66677777 7777777777777766666554433
No 220
>PHA01750 hypothetical protein
Probab=70.70 E-value=35 Score=24.15 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy14063 37 VNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLE 84 (531)
Q Consensus 37 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (531)
+-|..++.-+..--..+.+.++..++.++...+.+.+.+++++.++..
T Consensus 23 qlYlKIKq~lkdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 23 QLYLKIKQALKDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445555555555555555666666665555555555555555444443
No 221
>KOG3647|consensus
Probab=70.40 E-value=95 Score=29.05 Aligned_cols=98 Identities=13% Similarity=0.118 Sum_probs=0.0
Q ss_pred hHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 123 SAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAK 202 (531)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~ 202 (531)
++ .+--..++.-+..+..+.......++........+..+|+....+++...+.++.+..-.-....+++..+.++..
T Consensus 102 el--~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqk 179 (338)
T KOG3647|consen 102 EL--LEVEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQK 179 (338)
T ss_pred cH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14063 203 LLDQVEKLAREVSEKRESMQ 222 (531)
Q Consensus 203 ~~~~l~~l~~~l~~~~~~~~ 222 (531)
+-..+-.--..+.-+++++.
T Consensus 180 ly~~Y~l~f~nl~yL~~qld 199 (338)
T KOG3647|consen 180 LYQRYFLRFHNLDYLKSQLD 199 (338)
T ss_pred HHHHHHHHHhhHHHHHHHHH
No 222
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=69.69 E-value=63 Score=34.34 Aligned_cols=42 Identities=12% Similarity=0.223 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14063 182 MESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQT 223 (531)
Q Consensus 182 ~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~ 223 (531)
+..-..-...++.++...+..+..++..++.++..++.++..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 170 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNA 170 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444445555555555555555555554443
No 223
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=68.49 E-value=96 Score=32.94 Aligned_cols=43 Identities=19% Similarity=0.105 Sum_probs=19.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 175 LTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEK 217 (531)
Q Consensus 175 l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~ 217 (531)
+..-..-...++.++...+..+..++.+++.++..++.++..+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333334444444444444444444444444444444444433
No 224
>KOG0982|consensus
Probab=68.45 E-value=1.4e+02 Score=30.14 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=7.2
Q ss_pred hhhHHHHHHHhhccHH
Q psy14063 17 TRVQLVETDLKALEPE 32 (531)
Q Consensus 17 ~~~~~~e~~~~~Le~~ 32 (531)
.++..+++.+..|+..
T Consensus 222 ~kv~flerkv~eledd 237 (502)
T KOG0982|consen 222 RKVRFLERKVQELEDD 237 (502)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 3344444444444443
No 225
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=68.45 E-value=19 Score=36.26 Aligned_cols=42 Identities=19% Similarity=0.427 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 177 TRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKR 218 (531)
Q Consensus 177 ~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~ 218 (531)
..+.+++..+..+...+..+...+......+..+...++++.
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlE 185 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLE 185 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444433333333433444444333
No 226
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=65.72 E-value=1.7e+02 Score=30.20 Aligned_cols=22 Identities=9% Similarity=0.252 Sum_probs=9.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH
Q psy14063 63 KNLGEHETKVQQMEQELTANLE 84 (531)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~~~~~ 84 (531)
.++..++.++...+.++..+..
T Consensus 178 ~ql~~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 178 QQIAALREDLARAQSKLSAYQQ 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 227
>KOG2129|consensus
Probab=65.71 E-value=1.5e+02 Score=29.66 Aligned_cols=18 Identities=11% Similarity=0.137 Sum_probs=7.0
Q ss_pred HHHHHhhccHHHHHHHHH
Q psy14063 22 VETDLKALEPELRKAVNF 39 (531)
Q Consensus 22 ~e~~~~~Le~~~~~a~~~ 39 (531)
+.++...|-.-|+.-.+|
T Consensus 112 l~keketla~~Ye~eee~ 129 (552)
T KOG2129|consen 112 LFKEKETLATVYEVEEEF 129 (552)
T ss_pred hhccccccchhhhhhhhh
Confidence 333333333334333333
No 228
>KOG2991|consensus
Probab=65.70 E-value=1.2e+02 Score=28.28 Aligned_cols=42 Identities=14% Similarity=0.243 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 180 PAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESM 221 (531)
Q Consensus 180 ~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~ 221 (531)
+++......+...+.++.....-.+..+--++.++.+.+..+
T Consensus 253 eElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~I 294 (330)
T KOG2991|consen 253 EELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEI 294 (330)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333344444433333
No 229
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=65.52 E-value=1.2e+02 Score=28.53 Aligned_cols=22 Identities=0% Similarity=0.323 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14063 150 KLADLEANLEKVQTTLTERKTL 171 (531)
Q Consensus 150 ~i~~~~~~i~~~e~~l~~~~~~ 171 (531)
.+...+..++.++.+|..+..+
T Consensus 194 ei~~~re~i~el~e~I~~L~~e 215 (258)
T PF15397_consen 194 EIVQFREEIDELEEEIPQLRAE 215 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 230
>KOG0239|consensus
Probab=65.46 E-value=2.1e+02 Score=31.30 Aligned_cols=6 Identities=33% Similarity=0.490 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy14063 213 EVSEKR 218 (531)
Q Consensus 213 ~l~~~~ 218 (531)
++.+++
T Consensus 308 ~i~eLk 313 (670)
T KOG0239|consen 308 EILELK 313 (670)
T ss_pred HHHHhh
Confidence 333333
No 231
>PF14282 FlxA: FlxA-like protein
Probab=65.23 E-value=35 Score=27.31 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHhhhhhhhhh
Q psy14063 476 KDLEVKEKRLASLETELRILSQ----QKMEVETQLNCTGNELKYKKQEYDTCLID 526 (531)
Q Consensus 476 ~~l~~l~~~~~~l~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 526 (531)
..+..|.++|..|..++..+.. .-+........|..+|..|..+|..++.+
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888776 23445556666666666666666655443
No 232
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=64.77 E-value=1.6e+02 Score=29.72 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=12.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q psy14063 64 NLGEHETKVQQMEQELTANLE 84 (531)
Q Consensus 64 ~~~~~~~~~~~~~~~l~~~~~ 84 (531)
.+..++.+++.+..++.+++.
T Consensus 63 ~i~~lqkkL~~y~~~l~ele~ 83 (395)
T PF10267_consen 63 TIAQLQKKLEQYHKRLKELEQ 83 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445555556666666666555
No 233
>PLN02939 transferase, transferring glycosyl groups
Probab=63.66 E-value=2.7e+02 Score=31.84 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=21.6
Q ss_pred hhhhhhHHHHHhHHhhhhHHHHHHHhhccHHHHHH
Q psy14063 2 EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 36 (531)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a 36 (531)
++.|--|++.+-..++.++.+-.+.+.|+.+++-.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (977)
T PLN02939 141 EKNILLLNQARLQALEDLEKILTEKEALQGKINIL 175 (977)
T ss_pred HhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34455566777777777777666666666655533
No 234
>KOG0982|consensus
Probab=63.58 E-value=1.7e+02 Score=29.50 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=5.1
Q ss_pred HHHHhhccHHHHH
Q psy14063 23 ETDLKALEPELRK 35 (531)
Q Consensus 23 e~~~~~Le~~~~~ 35 (531)
...+.-|++.+..
T Consensus 221 ~~kv~flerkv~e 233 (502)
T KOG0982|consen 221 ERKVRFLERKVQE 233 (502)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334443333
No 235
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=63.43 E-value=81 Score=30.94 Aligned_cols=6 Identities=17% Similarity=0.689 Sum_probs=3.0
Q ss_pred cCcchH
Q psy14063 256 IDQKYD 261 (531)
Q Consensus 256 v~~~y~ 261 (531)
..++|+
T Consensus 119 yKdEYE 124 (330)
T PF07851_consen 119 YKDEYE 124 (330)
T ss_pred hhhhHH
Confidence 345554
No 236
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=63.21 E-value=1.4e+02 Score=33.29 Aligned_cols=12 Identities=0% Similarity=0.313 Sum_probs=6.1
Q ss_pred CCccEEccCCce
Q psy14063 364 GGYRMVTLEGAI 375 (531)
Q Consensus 364 ~~~~~vt~~G~~ 375 (531)
.|.+++..|+++
T Consensus 559 ~G~rVLlID~D~ 570 (726)
T PRK09841 559 SDQKVLFIDADL 570 (726)
T ss_pred CCCeEEEEeCCC
Confidence 344555555554
No 237
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=63.05 E-value=1e+02 Score=26.68 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=13.7
Q ss_pred HHHHHHhccCCcEEecchH--HHHHHHHHHHHcC
Q psy14063 262 IAVSTACGALNYIVTETVE--AGEAVIAAVKRQN 293 (531)
Q Consensus 262 ~Aie~~lg~l~~ivv~~~~--~a~~~i~~Lk~~~ 293 (531)
.||-..| .+..|.+++.. .....|.-|++..
T Consensus 100 ~av~all-D~d~l~l~~dg~~Gldeqi~~lkes~ 132 (155)
T PF06810_consen 100 KAVKALL-DLDKLKLDDDGLKGLDEQIKALKESD 132 (155)
T ss_pred HHHHHhc-CHHHeeeCCCccccHHHHHHHHHhcC
Confidence 3444333 33444444332 2344555666543
No 238
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=62.78 E-value=49 Score=22.95 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhh
Q psy14063 476 KDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDT 522 (531)
Q Consensus 476 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 522 (531)
..+..|..++..|..++..+...+..+...+...+.+-......|..
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666666666666666666666555555444444443
No 239
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=62.10 E-value=1.3e+02 Score=30.89 Aligned_cols=13 Identities=15% Similarity=0.406 Sum_probs=6.1
Q ss_pred cccccC--Ccccccc
Q psy14063 392 RIGYSG--GGYRMVT 404 (531)
Q Consensus 392 ~~g~~~--~~~~~v~ 404 (531)
..|+++ .|+-+|.
T Consensus 345 ~LGWiSD~~GiPCIs 359 (472)
T TIGR03752 345 GLGWISDPYGIPCIS 359 (472)
T ss_pred CceeecCCCCCCCCC
Confidence 445554 3444553
No 240
>PRK11519 tyrosine kinase; Provisional
Probab=61.87 E-value=1.9e+02 Score=32.07 Aligned_cols=11 Identities=9% Similarity=0.329 Sum_probs=5.0
Q ss_pred CccEEccCCce
Q psy14063 365 GYRMVTLEGAI 375 (531)
Q Consensus 365 ~~~~vt~~G~~ 375 (531)
+.+++-.|+++
T Consensus 555 g~rvLlID~Dl 565 (719)
T PRK11519 555 NKRVLLIDCDM 565 (719)
T ss_pred CCcEEEEeCCC
Confidence 44444444444
No 241
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=61.29 E-value=2.5e+02 Score=30.64 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=15.7
Q ss_pred hhhHHHHHhHHhhhhHHHHHHHhhccHHHHHHHHH
Q psy14063 5 YGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 39 (531)
Q Consensus 5 ~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~ 39 (531)
++.|..++..--++.-.+.=++.....-.+.+..|
T Consensus 787 LE~L~~eRD~v~EqhA~~sFDvQK~QRlh~~FsqF 821 (1480)
T COG3096 787 LESLHAERDVLSERHATLSFDVQKTQRLHQAFSRF 821 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34444555444444444444444444444444444
No 242
>KOG1850|consensus
Probab=60.74 E-value=1.6e+02 Score=28.34 Aligned_cols=32 Identities=13% Similarity=0.245 Sum_probs=12.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 137 LEIFLSTQSKETKKLADLEANLEKVQTTLTER 168 (531)
Q Consensus 137 ~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~ 168 (531)
+..+-...++++.-+...++-...+..+++..
T Consensus 224 l~lY~aKyeefq~tl~KSNE~F~~fK~E~ekm 255 (391)
T KOG1850|consen 224 LALYMAKYEEFQTTLAKSNELFTKFKQEMEKM 255 (391)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33333334444444433333333333333333
No 243
>PRK09343 prefoldin subunit beta; Provisional
Probab=59.80 E-value=98 Score=25.46 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 196 LTREEAKLLDQVEKLAREVSEKRE 219 (531)
Q Consensus 196 l~~~~~~~~~~l~~l~~~l~~~~~ 219 (531)
+...+..+......++..+.+++.
T Consensus 83 ie~~ik~lekq~~~l~~~l~e~q~ 106 (121)
T PRK09343 83 LELRSRTLEKQEKKLREKLKELQA 106 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 244
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=59.79 E-value=87 Score=24.90 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 193 LADLTREEAKLLDQVEKLAREVSEKRES 220 (531)
Q Consensus 193 ~~~l~~~~~~~~~~l~~l~~~l~~~~~~ 220 (531)
+..+...+..+...+..+..++.+++..
T Consensus 72 ~e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 72 LETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444333
No 245
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=59.32 E-value=1.1e+02 Score=26.02 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 181 AMESEIAESRARLADLTREEAKLLDQVEKLAR 212 (531)
Q Consensus 181 ~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~ 212 (531)
.+..+++.+...+..+...+..+...+..+..
T Consensus 98 ~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~ 129 (145)
T COG1730 98 FLKKRIEELEKAIEKLQQALAELAQRIEQLEQ 129 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 246
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=59.32 E-value=1.5e+02 Score=30.50 Aligned_cols=14 Identities=7% Similarity=0.192 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q psy14063 206 QVEKLAREVSEKRE 219 (531)
Q Consensus 206 ~l~~l~~~l~~~~~ 219 (531)
++..++..+.++..
T Consensus 124 ~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 124 ERQQLQGLIDQLQR 137 (472)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 247
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=59.16 E-value=1.5e+02 Score=27.43 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=13.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 177 TRVPAMESEIAESRARLADLTREEAKLLDQVEKLARE 213 (531)
Q Consensus 177 ~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~ 213 (531)
.....+...+.........++..+..+..++.+++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~ 135 (225)
T COG1842 99 DLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAK 135 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 248
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=58.95 E-value=87 Score=24.64 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 189 SRARLADLTREEAKLLDQVEKLAREVSEKRES 220 (531)
Q Consensus 189 l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~ 220 (531)
+......+...+..+...+..+..++.+++..
T Consensus 67 L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 67 LEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444433
No 249
>PF15456 Uds1: Up-regulated During Septation
Probab=58.86 E-value=1e+02 Score=25.46 Aligned_cols=7 Identities=29% Similarity=0.401 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy14063 149 KKLADLE 155 (531)
Q Consensus 149 ~~i~~~~ 155 (531)
.+++.++
T Consensus 36 ~R~~~lr 42 (124)
T PF15456_consen 36 SRLEYLR 42 (124)
T ss_pred HHHHHHH
Confidence 3333333
No 250
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=58.61 E-value=83 Score=29.92 Aligned_cols=21 Identities=5% Similarity=-0.181 Sum_probs=9.4
Q ss_pred HHHHHhhCCeE-EEcCHHHHHH
Q psy14063 338 LAFYFATRETL-VAQDLNQAKR 358 (531)
Q Consensus 338 ~~~~~llg~~~-v~~~l~~A~~ 358 (531)
+-..+|+|.++ ...+.+.|..
T Consensus 180 ~~A~y~LG~~y~~~g~~~~A~~ 201 (263)
T PRK10803 180 PNANYWLGQLNYNKGKKDDAAY 201 (263)
T ss_pred HHHHHHHHHHHHHcCCHHHHHH
Confidence 34445555532 2344455543
No 251
>PRK00736 hypothetical protein; Provisional
Probab=58.53 E-value=69 Score=23.29 Aligned_cols=49 Identities=20% Similarity=0.140 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhh
Q psy14063 476 KDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTCL 524 (531)
Q Consensus 476 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 524 (531)
..|..|+..+.-.+..+..+...+......+..+..++..+..++....
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677888888888888888877777777777777777777766665543
No 252
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=58.33 E-value=1.7e+02 Score=27.75 Aligned_cols=57 Identities=18% Similarity=0.324 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 151 LADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQV 207 (531)
Q Consensus 151 i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l 207 (531)
+...+.+++....++...+.++.++..++.+...++.+++.+-..+...+.-+..++
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV 258 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKV 258 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444445555444444444444444433
No 253
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=57.93 E-value=1.7e+02 Score=27.63 Aligned_cols=26 Identities=12% Similarity=0.298 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy14063 78 ELTANLESIKKCTDEMESAKSELKTV 103 (531)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~~~ 103 (531)
++..+...+..++.++.....++.-+
T Consensus 82 ~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 82 KLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544
No 254
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=56.66 E-value=1.1e+02 Score=25.10 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14063 196 LTREEAKLLDQVEKLAREVSEKRESMQT 223 (531)
Q Consensus 196 l~~~~~~~~~~l~~l~~~l~~~~~~~~~ 223 (531)
...++..+...+..+...+..+...+..
T Consensus 79 k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 79 KEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433
No 255
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=56.58 E-value=1.3e+02 Score=26.98 Aligned_cols=27 Identities=15% Similarity=0.385 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 148 TKKLADLEANLEKVQTTLTERKTLCEE 174 (531)
Q Consensus 148 ~~~i~~~~~~i~~~e~~l~~~~~~l~~ 174 (531)
...|+.+++.+..++.-+...+.++..
T Consensus 166 ~~Dl~~ie~QV~~Le~~L~~k~~eL~~ 192 (195)
T PF12761_consen 166 REDLDTIEEQVDGLESHLSSKKQELQQ 192 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443333
No 256
>KOG2008|consensus
Probab=55.92 E-value=1.9e+02 Score=27.72 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=19.2
Q ss_pred HHHHhHHhhhhHHHHHHHhhccHHHHHH-HHH
Q psy14063 9 DEERTEKLTRVQLVETDLKALEPELRKA-VNF 39 (531)
Q Consensus 9 ~~~~~~~~~~~~~~e~~~~~Le~~~~~a-~~~ 39 (531)
...++..+++++....++...+.+.+-+ ..|
T Consensus 12 l~~I~~eLEkLN~sTDdIN~~E~~Le~ar~~F 43 (426)
T KOG2008|consen 12 LPRIQGELEKLNQSTDDINRRETELEDARQKF 43 (426)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 3456666677777666666666666655 444
No 257
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=54.88 E-value=68 Score=22.16 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q psy14063 485 LASLETELRILSQQKMEVETQLNCTGNELKYKKQEYD 521 (531)
Q Consensus 485 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 521 (531)
+.++++++..+...+..++.+.+.+...++.++..+.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555443
No 258
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=53.86 E-value=2.4e+02 Score=28.17 Aligned_cols=8 Identities=13% Similarity=-0.130 Sum_probs=2.9
Q ss_pred HHHHHHhc
Q psy14063 262 IAVSTACG 269 (531)
Q Consensus 262 ~Aie~~lg 269 (531)
.++-.++|
T Consensus 336 l~~~~~~g 343 (362)
T TIGR01010 336 ILATFVIL 343 (362)
T ss_pred HHHHHHHH
Confidence 33333333
No 259
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=53.83 E-value=1.4e+02 Score=25.32 Aligned_cols=7 Identities=0% Similarity=0.273 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy14063 180 PAMESEI 186 (531)
Q Consensus 180 ~~~~~~l 186 (531)
..+...+
T Consensus 129 ~~Lv~~L 135 (159)
T PF04949_consen 129 AQLVTRL 135 (159)
T ss_pred HHHHHHH
Confidence 3333333
No 260
>KOG2010|consensus
Probab=53.81 E-value=1.8e+02 Score=28.06 Aligned_cols=8 Identities=0% Similarity=-0.089 Sum_probs=3.8
Q ss_pred cccccccc
Q psy14063 249 RLGDLGGI 256 (531)
Q Consensus 249 ~l~~li~v 256 (531)
++...|+|
T Consensus 226 ~v~g~I~~ 233 (405)
T KOG2010|consen 226 PVAGAITV 233 (405)
T ss_pred ccccceee
Confidence 44445444
No 261
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=53.72 E-value=1.2e+02 Score=25.71 Aligned_cols=6 Identities=67% Similarity=1.243 Sum_probs=0.0
Q ss_pred cccccc
Q psy14063 248 GRLGDL 253 (531)
Q Consensus 248 g~l~~l 253 (531)
|.+.++
T Consensus 131 ~rl~El 136 (141)
T PF13874_consen 131 GRLNEL 136 (141)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 444443
No 262
>KOG3091|consensus
Probab=53.36 E-value=2.1e+02 Score=29.60 Aligned_cols=110 Identities=14% Similarity=0.095 Sum_probs=0.0
Q ss_pred HhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy14063 105 KKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMES 184 (531)
Q Consensus 105 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~ 184 (531)
...+...+.- -..+.... +..+....+++.++.+...+.-.+|..++.+..++..+|=++-..++-++..=-.+..
T Consensus 336 F~dL~~R~K~--Q~q~~~~~--r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~ 411 (508)
T KOG3091|consen 336 FEDLRQRLKV--QDQEVKQH--RIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTP 411 (508)
T ss_pred hHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 185 EIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQ 222 (531)
Q Consensus 185 ~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~ 222 (531)
..+++..++..+..+++.= .++..++..+.....
T Consensus 412 ~EE~Lr~Kldtll~~ln~P----nq~k~Rl~~L~e~~r 445 (508)
T KOG3091|consen 412 DEEELRAKLDTLLAQLNAP----NQLKARLDELYEILR 445 (508)
T ss_pred cHHHHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHH
No 263
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=53.33 E-value=42 Score=34.43 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q psy14063 477 DLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYD 521 (531)
Q Consensus 477 ~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 521 (531)
...+++++++.+.+++..+..+...++.+++.+..++..|+.++.
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555666666666666666655553
No 264
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=52.36 E-value=62 Score=33.29 Aligned_cols=8 Identities=38% Similarity=0.555 Sum_probs=3.2
Q ss_pred EEcccccc
Q psy14063 436 MVTLEGAI 443 (531)
Q Consensus 436 ~vt~~g~~ 443 (531)
+|+..|.+
T Consensus 315 vVsk~G~i 322 (475)
T PRK13729 315 VVMRNGKI 322 (475)
T ss_pred EEecchHH
Confidence 33444443
No 265
>KOG1103|consensus
Probab=51.75 E-value=2.4e+02 Score=27.50 Aligned_cols=13 Identities=31% Similarity=0.578 Sum_probs=6.7
Q ss_pred hhHHHHHhccccC
Q psy14063 419 QDLNQAKRIGYSG 431 (531)
Q Consensus 419 ~~l~~a~~~~~~~ 431 (531)
.|+++|.+++.++
T Consensus 500 ~d~~AA~Qla~~g 512 (561)
T KOG1103|consen 500 EDLEAAIQLANAG 512 (561)
T ss_pred HHHHHHHHHHhcC
Confidence 4555555554443
No 266
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=51.61 E-value=1.5e+02 Score=24.99 Aligned_cols=11 Identities=0% Similarity=0.141 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q psy14063 207 VEKLAREVSEK 217 (531)
Q Consensus 207 l~~l~~~l~~~ 217 (531)
+..-+..+.++
T Consensus 77 l~~re~~i~rL 87 (135)
T TIGR03495 77 LAQREQRIERL 87 (135)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 267
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=51.51 E-value=1.2e+02 Score=24.00 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 191 ARLADLTREEAKLLDQVEKLAREVS 215 (531)
Q Consensus 191 ~~~~~l~~~~~~~~~~l~~l~~~l~ 215 (531)
.++..+.-.-..+..++..++.++.
T Consensus 47 qE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 47 QENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444443
No 268
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=50.86 E-value=84 Score=22.30 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q psy14063 483 KRLASLETELRILSQQKMEVETQLNCTGNELKYKKQ 518 (531)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 518 (531)
..+.+|+..+..+......+...+..+..++..+..
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555554444443
No 269
>PF14992 TMCO5: TMCO5 family
Probab=50.52 E-value=2.3e+02 Score=27.02 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=9.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q psy14063 82 NLESIKKCTDEMESAKSELKT 102 (531)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~ 102 (531)
+-.+|...+..++++..++..
T Consensus 23 lL~ki~~~E~~iq~Le~Eit~ 43 (280)
T PF14992_consen 23 LLQKIQEKEGAIQSLEREITK 43 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 270
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=49.83 E-value=2.9e+02 Score=27.96 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14063 37 VNFLELENCVQRKHNEI 53 (531)
Q Consensus 37 ~~~~~~~~~l~~l~~~l 53 (531)
.....++.+|..|...+
T Consensus 209 a~~a~LE~RL~~LE~~l 225 (388)
T PF04912_consen 209 ARAADLEKRLARLESAL 225 (388)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44456777777776555
No 271
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=48.98 E-value=2.5e+02 Score=26.96 Aligned_cols=31 Identities=13% Similarity=-0.001 Sum_probs=12.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy14063 57 ERYVNMKNLGEHETKVQQMEQELTANLESIK 87 (531)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (531)
+++.+...-..+..+++.-+..-..++.+++
T Consensus 64 QLn~L~aENt~L~SkLe~EKq~kerLEtEiE 94 (305)
T PF14915_consen 64 QLNVLKAENTMLNSKLEKEKQNKERLETEIE 94 (305)
T ss_pred hHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Confidence 3333343334444444333333333333333
No 272
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=48.57 E-value=1.4e+02 Score=28.40 Aligned_cols=7 Identities=29% Similarity=0.691 Sum_probs=3.2
Q ss_pred hHHHHHH
Q psy14063 260 YDIAVST 266 (531)
Q Consensus 260 y~~Aie~ 266 (531)
|..|+..
T Consensus 146 Y~~A~~l 152 (263)
T PRK10803 146 YNAAIAL 152 (263)
T ss_pred HHHHHHH
Confidence 4444433
No 273
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=48.50 E-value=2.7e+02 Score=27.08 Aligned_cols=40 Identities=10% Similarity=0.153 Sum_probs=19.9
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy14063 57 ERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESA 96 (531)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 96 (531)
-..++...+.+....+...+..|.+++.+++.+...+..+
T Consensus 68 s~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y 107 (301)
T PF06120_consen 68 SSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNY 107 (301)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555555555555555554444433
No 274
>COG5283 Phage-related tail protein [Function unknown]
Probab=48.04 E-value=5.1e+02 Score=30.21 Aligned_cols=17 Identities=24% Similarity=0.132 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14063 478 LEVKEKRLASLETELRI 494 (531)
Q Consensus 478 l~~l~~~~~~l~~~~~~ 494 (531)
+.++.+.+.++...+..
T Consensus 519 ~kkla~~iaE~~~~lad 535 (1213)
T COG5283 519 LKKLADAIAELFQSLAD 535 (1213)
T ss_pred HHHHHhhhhHHHHHHHH
Confidence 44444444444444433
No 275
>KOG0288|consensus
Probab=47.58 E-value=3.1e+02 Score=27.63 Aligned_cols=9 Identities=11% Similarity=0.457 Sum_probs=4.6
Q ss_pred ccccccccc
Q psy14063 438 TLEGAIIEP 446 (531)
Q Consensus 438 t~~g~~~~~ 446 (531)
.++|+++-.
T Consensus 396 Spd~~YvaA 404 (459)
T KOG0288|consen 396 SPDGSYVAA 404 (459)
T ss_pred CCCCceeee
Confidence 455555443
No 276
>smart00338 BRLZ basic region leucin zipper.
Probab=47.16 E-value=87 Score=22.29 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q psy14063 484 RLASLETELRILSQQKMEVETQLNCTGNELKYKKQ 518 (531)
Q Consensus 484 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 518 (531)
.+..|+.++..+..+-..+..++..+..++..++.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444443
No 277
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=47.06 E-value=1.7e+02 Score=24.54 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 193 LADLTREEAKLLDQVEKLAREVS 215 (531)
Q Consensus 193 ~~~l~~~~~~~~~~l~~l~~~l~ 215 (531)
.......+...+..+..+..+..
T Consensus 70 ~~~~~~~l~~re~~i~rL~~ENe 92 (135)
T TIGR03495 70 LAQARALLAQREQRIERLKRENE 92 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCH
Confidence 33333333333333444433333
No 278
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=46.78 E-value=2.1e+02 Score=25.57 Aligned_cols=8 Identities=13% Similarity=0.264 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q psy14063 188 ESRARLAD 195 (531)
Q Consensus 188 ~l~~~~~~ 195 (531)
.++.++..
T Consensus 165 ~lk~el~~ 172 (192)
T PF05529_consen 165 KLKKELEK 172 (192)
T ss_pred HHHHHHHH
Confidence 33333333
No 279
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=46.22 E-value=1.5e+02 Score=26.17 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=32.6
Q ss_pred hhccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy14063 27 KALEPELRKA-VNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLE 84 (531)
Q Consensus 27 ~~Le~~~~~a-~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (531)
.-|+.+.+.. .+..+++..+..+...+..+++-....++......+..++.++..++.
T Consensus 88 ~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 88 EQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444 334455555555555555556666666666666666666666665443
No 280
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=45.76 E-value=2.6e+02 Score=26.28 Aligned_cols=43 Identities=30% Similarity=0.328 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 180 PAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQ 222 (531)
Q Consensus 180 ~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~ 222 (531)
.-+..+.+..+.+..+++.++......+..++.++..++..--
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666666666666666666666666666655433
No 281
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=45.64 E-value=1.5e+02 Score=29.07 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=9.9
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q psy14063 85 SIKKCTDEMESAKSELKTV 103 (531)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ 103 (531)
++..++.++..+..++.-+
T Consensus 84 Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 84 EIKELEAKIEELEEELKIL 102 (363)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555444
No 282
>PHA03011 hypothetical protein; Provisional
Probab=45.01 E-value=1.5e+02 Score=23.13 Aligned_cols=52 Identities=10% Similarity=0.096 Sum_probs=22.1
Q ss_pred HHHHHhhccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q psy14063 22 VETDLKALEPELRKA-VNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQE 78 (531)
Q Consensus 22 ~e~~~~~Le~~~~~a-~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (531)
+...++.|-.+++.. .+|.-+++++..+ -.-++++...+..+..+++.+++.
T Consensus 62 i~e~ldeL~~qYN~L~dEYn~i~Ne~k~~-----~~iIQdn~d~I~~LraeIDkLK~n 114 (120)
T PHA03011 62 IIEILDELIAQYNELLDEYNLIENEIKDL-----EIIIQDNDDEIHFLRAEIDKLKEN 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhchHHHHHHHHHHHHHHHH
Confidence 344444444444444 4444444444444 222333344444444444444433
No 283
>KOG3564|consensus
Probab=44.89 E-value=3.4e+02 Score=27.96 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=26.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy14063 137 LEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAES 189 (531)
Q Consensus 137 ~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l 189 (531)
+.++.+..++..+.-+....++.+++..+...+++...+.-++......+...
T Consensus 30 f~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ 82 (604)
T KOG3564|consen 30 FIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAE 82 (604)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHH
Confidence 33444444455555555555555555555555555555554444444444333
No 284
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=44.88 E-value=4.5e+02 Score=28.65 Aligned_cols=10 Identities=30% Similarity=0.238 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy14063 479 EVKEKRLASL 488 (531)
Q Consensus 479 ~~l~~~~~~l 488 (531)
..+-..+..|
T Consensus 702 ~~ll~dLQ~l 711 (739)
T PF07111_consen 702 SVLLDDLQGL 711 (739)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 285
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=44.75 E-value=5.4e+02 Score=29.58 Aligned_cols=85 Identities=18% Similarity=0.226 Sum_probs=48.1
Q ss_pred HhhhhHHHHHHHhhccHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q psy14063 15 KLTRVQLVETDLKALEPELRKA---------VNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLES 85 (531)
Q Consensus 15 ~~~~~~~~e~~~~~Le~~~~~a---------~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (531)
.+..+..++.++.-|..++.+. .....++++|+.++.+|+-+.+.+..+++..+++++-...-.+......
T Consensus 1129 ~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~e~PKnltdvK~miss 1208 (1439)
T PF12252_consen 1129 AIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKLYDAYLVEITKQISALEKEKPKNLTDVKSMISS 1208 (1439)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHH
Confidence 3334444555555555554432 2234677888888888877777777777777776444444444444444
Q ss_pred HHHhHHHHHHHHHH
Q psy14063 86 IKKCTDEMESAKSE 99 (531)
Q Consensus 86 ~~~~~~~~~~~~~~ 99 (531)
+......++.++++
T Consensus 1209 f~d~laeiE~LrnE 1222 (1439)
T PF12252_consen 1209 FNDRLAEIEFLRNE 1222 (1439)
T ss_pred HHhhhhHHHHHHHH
Confidence 44444445544443
No 286
>KOG0972|consensus
Probab=44.41 E-value=2.9e+02 Score=26.35 Aligned_cols=19 Identities=11% Similarity=0.356 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14063 196 LTREEAKLLDQVEKLAREV 214 (531)
Q Consensus 196 l~~~~~~~~~~l~~l~~~l 214 (531)
++..+..+..+...+.-++
T Consensus 340 IkqavsKLk~et~~mnv~i 358 (384)
T KOG0972|consen 340 IKQAVSKLKEETQTMNVQI 358 (384)
T ss_pred HHHHHHHHHHHHHhhhhhe
Confidence 3344444444444444433
No 287
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=44.38 E-value=2.3e+02 Score=25.26 Aligned_cols=54 Identities=9% Similarity=0.139 Sum_probs=21.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 169 KTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQ 222 (531)
Q Consensus 169 ~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~ 222 (531)
+.....+...+.-...............+.+...++.+....+.+++.++.++.
T Consensus 125 ~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~ 178 (192)
T PF11180_consen 125 EARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVR 178 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333444444444444444444444444433
No 288
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=44.28 E-value=2e+02 Score=29.91 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14063 199 EEAKLLDQVEKLAREVSEKRE 219 (531)
Q Consensus 199 ~~~~~~~~l~~l~~~l~~~~~ 219 (531)
....+...+..+..++..++.
T Consensus 383 ~~~~l~~~~~~l~~~~~~l~~ 403 (451)
T PF03961_consen 383 KKKELKEELKELKEELKELKE 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 289
>KOG3433|consensus
Probab=44.05 E-value=2.3e+02 Score=25.03 Aligned_cols=8 Identities=25% Similarity=0.090 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy14063 133 AKSELEIF 140 (531)
Q Consensus 133 ~~~~~~~~ 140 (531)
+.+++...
T Consensus 86 Le~~L~~~ 93 (203)
T KOG3433|consen 86 LESQLATG 93 (203)
T ss_pred HHHHHHHh
Confidence 33333333
No 290
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=43.65 E-value=1.6e+02 Score=23.71 Aligned_cols=49 Identities=20% Similarity=0.141 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhh
Q psy14063 476 KDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTCL 524 (531)
Q Consensus 476 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 524 (531)
..+..++.++..+-.++..++.++.++-.+-..|+-+-..++..+....
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777788888888888888888888777777777777777666543
No 291
>KOG4809|consensus
Probab=43.29 E-value=4.2e+02 Score=27.85 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=9.0
Q ss_pred hhhhHHHHHHHhhccHHHHHH
Q psy14063 16 LTRVQLVETDLKALEPELRKA 36 (531)
Q Consensus 16 ~~~~~~~e~~~~~Le~~~~~a 36 (531)
++.++.-+++...|...++..
T Consensus 330 ~EeIe~~~ke~kdLkEkv~~l 350 (654)
T KOG4809|consen 330 LEEIESFRKENKDLKEKVNAL 350 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433
No 292
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=42.89 E-value=1.6e+02 Score=23.03 Aligned_cols=26 Identities=12% Similarity=0.247 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 187 AESRARLADLTREEAKLLDQVEKLAR 212 (531)
Q Consensus 187 ~~l~~~~~~l~~~~~~~~~~l~~l~~ 212 (531)
..+...+..+...+..+...+..++.
T Consensus 72 ~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 72 EKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 293
>KOG3809|consensus
Probab=42.63 E-value=3.8e+02 Score=27.20 Aligned_cols=34 Identities=12% Similarity=0.191 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy14063 70 TKVQQMEQELTANLESIKKCTDEMESAKSELKTV 103 (531)
Q Consensus 70 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 103 (531)
.++..+...+..+...+-.+.+-++-+.+.+..+
T Consensus 479 ~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daM 512 (583)
T KOG3809|consen 479 EKMKQLREKLQDLTKSAYPLGKLFDFINEDIDAM 512 (583)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHH
Confidence 3566666666666665555555555555555443
No 294
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=42.61 E-value=1.9e+02 Score=23.72 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14063 194 ADLTREEAKLLDQVEKLARE 213 (531)
Q Consensus 194 ~~l~~~~~~~~~~l~~l~~~ 213 (531)
..+...+..+...+..+..+
T Consensus 96 ~~l~~~~~~l~~~l~~l~~~ 115 (126)
T TIGR00293 96 EELEKAIEKLQEALAELASR 115 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 295
>smart00338 BRLZ basic region leucin zipper.
Probab=41.45 E-value=1.1e+02 Score=21.78 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy14063 476 KDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNEL 513 (531)
Q Consensus 476 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 513 (531)
..+..|+.++..|..+...+..++..+..++..+.+.+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777777777777777777776666544
No 296
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=41.26 E-value=4e+02 Score=27.02 Aligned_cols=21 Identities=10% Similarity=0.159 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14063 68 HETKVQQMEQELTANLESIKK 88 (531)
Q Consensus 68 ~~~~~~~~~~~l~~~~~~~~~ 88 (531)
.-.++..++.+|..++..+-.
T Consensus 207 ~la~~a~LE~RL~~LE~~lG~ 227 (388)
T PF04912_consen 207 QLARAADLEKRLARLESALGI 227 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 457788888888888884433
No 297
>PF15294 Leu_zip: Leucine zipper
Probab=41.25 E-value=3.3e+02 Score=26.06 Aligned_cols=15 Identities=7% Similarity=0.228 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy14063 68 HETKVQQMEQELTAN 82 (531)
Q Consensus 68 ~~~~~~~~~~~l~~~ 82 (531)
++.+-+.++.++..+
T Consensus 137 Lq~EN~kLk~rl~~l 151 (278)
T PF15294_consen 137 LQEENEKLKERLKSL 151 (278)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 298
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=41.24 E-value=5.6e+02 Score=28.77 Aligned_cols=6 Identities=33% Similarity=0.634 Sum_probs=2.4
Q ss_pred cccccc
Q psy14063 249 RLGDLG 254 (531)
Q Consensus 249 ~l~~li 254 (531)
.+|+.+
T Consensus 626 ~~Gd~V 631 (771)
T TIGR01069 626 KIGDKV 631 (771)
T ss_pred CCCCEE
Confidence 344433
No 299
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=41.17 E-value=1.8e+02 Score=30.11 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 192 RLADLTREEAKLLDQVEKLAREVS 215 (531)
Q Consensus 192 ~~~~l~~~~~~~~~~l~~l~~~l~ 215 (531)
....+...+..+..++..++..+.
T Consensus 383 ~~~~l~~~~~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 383 KKKELKEELKELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444433333
No 300
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=40.56 E-value=1.6e+02 Score=22.43 Aligned_cols=9 Identities=33% Similarity=0.338 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy14063 152 ADLEANLEK 160 (531)
Q Consensus 152 ~~~~~~i~~ 160 (531)
..+..+++.
T Consensus 15 ~~cr~~le~ 23 (85)
T PF15188_consen 15 AQCRRRLEA 23 (85)
T ss_pred HHHHHHHHH
Confidence 333333333
No 301
>PHA03011 hypothetical protein; Provisional
Probab=40.42 E-value=1.8e+02 Score=22.72 Aligned_cols=55 Identities=13% Similarity=0.210 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhccCC
Q psy14063 476 KDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTCLIDVKSP 530 (531)
Q Consensus 476 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 530 (531)
..++++..+..+|-++..-+...+..++.-+++--.++..++.++..+++.+.++
T Consensus 64 e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 64 EILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Confidence 5566777777888888888888888888888887888888888888887776543
No 302
>PRK14011 prefoldin subunit alpha; Provisional
Probab=39.85 E-value=2.4e+02 Score=24.06 Aligned_cols=10 Identities=10% Similarity=0.335 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q psy14063 147 ETKKLADLEA 156 (531)
Q Consensus 147 ~~~~i~~~~~ 156 (531)
+...+..++.
T Consensus 22 L~~si~~L~~ 31 (144)
T PRK14011 22 LQEELSSIDM 31 (144)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 303
>KOG0972|consensus
Probab=39.75 E-value=3.4e+02 Score=25.88 Aligned_cols=6 Identities=17% Similarity=0.285 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy14063 152 ADLEAN 157 (531)
Q Consensus 152 ~~~~~~ 157 (531)
+.+..+
T Consensus 251 dklh~e 256 (384)
T KOG0972|consen 251 DKLHKE 256 (384)
T ss_pred HHHHHH
Confidence 333333
No 304
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=39.69 E-value=2.4e+02 Score=24.06 Aligned_cols=39 Identities=21% Similarity=0.338 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 184 SEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQ 222 (531)
Q Consensus 184 ~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~ 222 (531)
..+.-++.+++.+...+..++..+..+...+..+....+
T Consensus 94 eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q 132 (145)
T COG1730 94 EAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQ 132 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444433
No 305
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=39.31 E-value=1.7e+02 Score=22.26 Aligned_cols=57 Identities=9% Similarity=0.098 Sum_probs=36.6
Q ss_pred hhhhhhHHHHHhHHhhhhHHHHHHHhhccHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy14063 2 EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA-VNFLELENCVQRKHNEIYQYER 58 (531)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a-~~~~~~~~~l~~l~~~l~~~~~ 58 (531)
+.++++..+...+|.+++-.-...++.|....+.. ..-....+.-..++..+.|..+
T Consensus 9 ~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~ 66 (89)
T PF00957_consen 9 QEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNY 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777666677777777766666 3334556666666666666654
No 306
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=38.37 E-value=4.4e+02 Score=26.74 Aligned_cols=28 Identities=14% Similarity=0.055 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy14063 52 EIYQYERYVNMKNLGEHETKVQQMEQEL 79 (531)
Q Consensus 52 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (531)
+.....+..+.+++..+..++.+++..-
T Consensus 58 qksa~~i~~lqkkL~~y~~~l~ele~~~ 85 (395)
T PF10267_consen 58 QKSAQTIAQLQKKLEQYHKRLKELEQGG 85 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3334456666666666666666666544
No 307
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=38.14 E-value=2.9e+02 Score=24.64 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 152 ADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESM 221 (531)
Q Consensus 152 ~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~ 221 (531)
.-++..|...+.....+...+.-...+-............+...+..+....+.++..++.++..++.+.
T Consensus 115 a~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 115 AQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444444444444444444444555555555555555555555555555555443
No 308
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=38.03 E-value=1.2e+02 Score=22.30 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 476 KDLEVKEKRLASLETELRILSQQKMEVETQLNCT 509 (531)
Q Consensus 476 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l 509 (531)
..+..+..++..++.++..++.+...++.++..+
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666777777777777777777777777666
No 309
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=37.83 E-value=2.3e+02 Score=30.93 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 193 LADLTREEAKLLDQVEKLAREVSEKRESM 221 (531)
Q Consensus 193 ~~~l~~~~~~~~~~l~~l~~~l~~~~~~~ 221 (531)
+..+..++..++.+++.+..++.++...+
T Consensus 600 ~~~~~~~~~~~~~~l~~~~~~w~~l~~~~ 628 (638)
T PRK10636 600 LTACLQQQASAKSGLEECEMAWLEAQEQL 628 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555443
No 310
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=37.23 E-value=2.3e+02 Score=23.14 Aligned_cols=102 Identities=19% Similarity=0.242 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHh-----------------------chhhcccccchH-H
Q psy14063 65 LGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTV-EKK-----------------------GKESNVIGSKFR-W 119 (531)
Q Consensus 65 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----------------------~~~~~l~~~~~~-~ 119 (531)
+..+...+..++.++..+...+..+...+..+..-++.+ .+. ....-+.. +. +
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~--iG~~ 78 (129)
T cd00890 1 LQELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVD--LGTG 78 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEE--ecCC
Q ss_pred HHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 120 SVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTER 168 (531)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~ 168 (531)
-+-+.........+..+++.+......+++.+..+...+..+...+...
T Consensus 79 ~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 79 VYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 311
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=36.80 E-value=5.2e+02 Score=27.12 Aligned_cols=18 Identities=6% Similarity=0.132 Sum_probs=7.9
Q ss_pred HHHHHhhhhhhHHHHHHH
Q psy14063 57 ERYVNMKNLGEHETKVQQ 74 (531)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~ 74 (531)
++.+...+|..++.+.+.
T Consensus 310 qV~qs~EKIa~LEqEKEH 327 (518)
T PF10212_consen 310 QVQQSQEKIAKLEQEKEH 327 (518)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 312
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=36.51 E-value=5.2e+02 Score=27.04 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=9.0
Q ss_pred HhhhhHHHHHHHhhccHHHH
Q psy14063 15 KLTRVQLVETDLKALEPELR 34 (531)
Q Consensus 15 ~~~~~~~~e~~~~~Le~~~~ 34 (531)
.++++..+..-+..|++-+.
T Consensus 263 l~eq~~~ld~AV~~Ltk~v~ 282 (531)
T PF15450_consen 263 LLEQCRKLDEAVAQLTKFVQ 282 (531)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 34444444444444444444
No 313
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=36.15 E-value=6.7e+02 Score=28.19 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=12.0
Q ss_pred HHhhhhHHHHHHHhhccHHHHHH
Q psy14063 14 EKLTRVQLVETDLKALEPELRKA 36 (531)
Q Consensus 14 ~~~~~~~~~e~~~~~Le~~~~~a 36 (531)
..++.+..++..+..|+.....+
T Consensus 561 ~~r~~ld~leaa~e~lE~r~~~~ 583 (984)
T COG4717 561 QLRKALDQLEAAYEALEGRFAAA 583 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555544
No 314
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=36.08 E-value=2.2e+02 Score=22.56 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=32.9
Q ss_pred hhhhHHHHHhHHhhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy14063 4 LYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTA 81 (531)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (531)
++..|...+..-..++..+..++..|.+.-.+......+..+...++ -.-..+.+.+....-+..++..++..|.+
T Consensus 23 EYk~L~~~v~~v~~~f~~L~~~l~~l~~~s~ey~~i~~I~~eY~k~K--k~~p~y~~~K~Rc~yL~~KL~HIK~~I~~ 98 (101)
T PF07303_consen 23 EYKELHAEVDAVSRRFQELDSELKRLPPGSQEYKRIAQILQEYNKKK--KRDPNYQEKKKRCEYLHNKLSHIKQLIQD 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHH---HHHHHHH--HTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666666666655554444433333333333332 01123334444444444444444444433
No 315
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=36.07 E-value=2.2e+02 Score=22.58 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=24.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy14063 134 KSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRAR 192 (531)
Q Consensus 134 ~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~ 192 (531)
+.....+++-.-+-+..-..+...+...+..|...+.+++.+.-.-..+..++..++.+
T Consensus 11 raQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~E 69 (102)
T PF10205_consen 11 RAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEE 69 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444444444444444444444444444433333
No 316
>KOG4572|consensus
Probab=35.38 E-value=6.6e+02 Score=27.90 Aligned_cols=18 Identities=17% Similarity=0.466 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14063 205 DQVEKLAREVSEKRESMQ 222 (531)
Q Consensus 205 ~~l~~l~~~l~~~~~~~~ 222 (531)
.+++++..++..++..+.
T Consensus 1092 helenLrnEieklndkIk 1109 (1424)
T KOG4572|consen 1092 HELENLRNEIEKLNDKIK 1109 (1424)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344444555555544444
No 317
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=32.64 E-value=15 Score=31.12 Aligned_cols=12 Identities=42% Similarity=0.639 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q psy14063 210 LAREVSEKRESM 221 (531)
Q Consensus 210 l~~~l~~~~~~~ 221 (531)
+...+..++..+
T Consensus 88 ls~nI~~IrelI 99 (138)
T PF06009_consen 88 LSRNISRIRELI 99 (138)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 318
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=32.64 E-value=2e+02 Score=21.18 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14063 152 ADLEANLEKVQTTLTER 168 (531)
Q Consensus 152 ~~~~~~i~~~e~~l~~~ 168 (531)
..++..+.++..-|..+
T Consensus 28 ~~~e~~l~ea~~~l~qM 44 (79)
T PF05008_consen 28 REIERDLDEAEELLKQM 44 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 319
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=32.57 E-value=7.2e+02 Score=27.48 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=16.9
Q ss_pred HHHHhhccHHHH----HHHHHHHHHHHHHHHHHH
Q psy14063 23 ETDLKALEPELR----KAVNFLELENCVQRKHNE 52 (531)
Q Consensus 23 e~~~~~Le~~~~----~a~~~~~~~~~l~~l~~~ 52 (531)
...++.|+.+++ +|-.|..++.++..++..
T Consensus 461 ~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E 494 (762)
T PLN03229 461 NEMIEKLKKEIDLEYTEAVIAMGLQERLENLREE 494 (762)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 344444444433 556667777777777543
No 320
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=32.54 E-value=7.2e+02 Score=27.50 Aligned_cols=7 Identities=14% Similarity=0.581 Sum_probs=3.8
Q ss_pred HHHHHHH
Q psy14063 285 VIAAVKR 291 (531)
Q Consensus 285 ~i~~Lk~ 291 (531)
++.||++
T Consensus 595 IMsYLkk 601 (861)
T PF15254_consen 595 IMSYLKK 601 (861)
T ss_pred HHHHHHh
Confidence 4555554
No 321
>COG5283 Phage-related tail protein [Function unknown]
Probab=32.49 E-value=8.7e+02 Score=28.43 Aligned_cols=95 Identities=11% Similarity=0.101 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHh
Q psy14063 65 LGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTV--EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLS 142 (531)
Q Consensus 65 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (531)
.+....-+..-..+...+.+..+....-++.+.+++.++ .....++.+.+ +..++-.+ +..+..+..++.....
T Consensus 45 ~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e--~~~q~tqa--e~~~~sas~q~~~a~~ 120 (1213)
T COG5283 45 QKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQE--YNAQYTQA--ENKLRSLSGQFGVASE 120 (1213)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHhhhchhhH
Confidence 333344444444444444444455555555554444433 22223333334 44444444 4444444444443333
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy14063 143 TQSKETKKLADLEANLEKVQT 163 (531)
Q Consensus 143 ~~~~~~~~i~~~~~~i~~~e~ 163 (531)
.+.--+..+..+...+..+..
T Consensus 121 q~~~~~~~iq~~~~~is~t~k 141 (1213)
T COG5283 121 QLMLQQKEIQRLQYAISTLNK 141 (1213)
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 333333444444444443333
No 322
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=31.98 E-value=2.7e+02 Score=22.45 Aligned_cols=48 Identities=21% Similarity=0.162 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhh
Q psy14063 476 KDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTC 523 (531)
Q Consensus 476 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 523 (531)
..+..++.++..+-.++..++.++.++-.+-..|+-+-..++..+..+
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777777777777777777777776666666666554
No 323
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=31.85 E-value=5.3e+02 Score=25.75 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q psy14063 92 EMESAKSELKTV 103 (531)
Q Consensus 92 ~~~~~~~~~~~~ 103 (531)
+..++..++..+
T Consensus 41 E~~hL~kEI~~C 52 (355)
T PF09766_consen 41 EKSHLQKEIKKC 52 (355)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 324
>PLN02678 seryl-tRNA synthetase
Probab=31.45 E-value=4.5e+02 Score=27.26 Aligned_cols=8 Identities=25% Similarity=0.081 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q psy14063 283 EAVIAAVK 290 (531)
Q Consensus 283 ~~~i~~Lk 290 (531)
..+++|..
T Consensus 178 ~AL~~y~l 185 (448)
T PLN02678 178 QALINFGL 185 (448)
T ss_pred HHHHHHHH
Confidence 34555543
No 325
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=31.35 E-value=8e+02 Score=27.64 Aligned_cols=8 Identities=25% Similarity=0.439 Sum_probs=3.3
Q ss_pred cccccccc
Q psy14063 249 RLGDLGGI 256 (531)
Q Consensus 249 ~l~~li~v 256 (531)
..|..+++
T Consensus 650 ~~g~v~~i 657 (782)
T PRK00409 650 QKGEVLSI 657 (782)
T ss_pred ceEEEEEE
Confidence 33444444
No 326
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=31.33 E-value=2.9e+02 Score=24.00 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14063 475 VKDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNE 512 (531)
Q Consensus 475 ~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 512 (531)
+.+-++++.+|..++.+|..+++-+...+....+|+.+
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 35666777777777777777777777666666666655
No 327
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=30.65 E-value=1.3e+02 Score=21.29 Aligned_cols=31 Identities=29% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14063 481 KEKRLASLETELRILSQQKMEVETQLNCTGN 511 (531)
Q Consensus 481 l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 511 (531)
++..++.|++.+..++++....+.++...++
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~~kq 60 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQAKQ 60 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 328
>PRK11020 hypothetical protein; Provisional
Probab=30.64 E-value=2.9e+02 Score=22.28 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHH
Q psy14063 37 VNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLE-SIKKCTDEMESAKS 98 (531)
Q Consensus 37 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~ 98 (531)
.++..+.+.|+.++.+++..........+.++..+++.+..+|..+.. .-..+.++-..+..
T Consensus 5 ~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~~ 67 (118)
T PRK11020 5 NEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLMK 67 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 329
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=30.29 E-value=4.7e+02 Score=24.63 Aligned_cols=86 Identities=19% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q psy14063 137 LEIFLSTQSKETKKLADLEANLEKVQTTLTERKTL--------------------------------------------- 171 (531)
Q Consensus 137 ~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~--------------------------------------------- 171 (531)
++.++.++..+..++...+.-+..++.++......
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 172 CEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQ 222 (531)
Q Consensus 172 l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~ 222 (531)
+.-+..+.+....+..+++.++......+..++.++..++..--.+-..+.
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 330
>PF15294 Leu_zip: Leucine zipper
Probab=30.08 E-value=5e+02 Score=24.86 Aligned_cols=143 Identities=15% Similarity=0.168 Sum_probs=0.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHhchhhcccccchHHHHHhHHhHhHHHHHHHH
Q psy14063 61 NMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTV----EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSE 136 (531)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 136 (531)
..+.+..++.+-+.++.++..++......-.+-..+...+..+ .-......+.. -..++..+ +..+..++.+
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~--~~q~l~dL--E~k~a~lK~e 205 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSF--KAQDLSDL--ENKMAALKSE 205 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc--cccchhhH--HHHHHHHHHH
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 137 LEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREV 214 (531)
Q Consensus 137 ~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l 214 (531)
++.. ..+.....+.++..+..+..++-..+.. +...-.+++..+.. ...+.....-+...+.++..++.++
T Consensus 206 ~ek~---~~d~~~~~k~L~e~L~~~KhelL~~Qeq---L~~aekeLekKfqq-T~ay~NMk~~ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 206 LEKA---LQDKESQQKALEETLQSCKHELLRVQEQ---LSLAEKELEKKFQQ-TAAYRNMKEILTKKNEQIKELRKRL 276 (278)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHhcchh---hhcchhhHHHHhCc-cHHHHHhHHHHHhccHHHHHHHHHh
No 331
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=29.94 E-value=2.9e+02 Score=22.06 Aligned_cols=83 Identities=14% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy14063 154 LEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDF 233 (531)
Q Consensus 154 ~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~ 233 (531)
+...+.........+...+..++.+.-.+...-.++..++..+......... -......+..++..+.....+..+++.
T Consensus 1 Ls~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~v~k~ 79 (106)
T PF05837_consen 1 LSLEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWRVMKN 79 (106)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q psy14063 234 VMQL 237 (531)
Q Consensus 234 l~~~ 237 (531)
+++.
T Consensus 80 v~q~ 83 (106)
T PF05837_consen 80 VFQA 83 (106)
T ss_pred HHHH
No 332
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=29.87 E-value=9.2e+02 Score=27.88 Aligned_cols=189 Identities=9% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH--------------HHHHhHHHHHHHHHHHHHH
Q psy14063 38 NFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLE--------------SIKKCTDEMESAKSELKTV 103 (531)
Q Consensus 38 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~ 103 (531)
+....+.+|..++..+..--+.+.++--..++.-+..+.+++..+++ .+..+..++.-++.+...+
T Consensus 1071 QIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRnEK~Rm 1150 (1439)
T PF12252_consen 1071 QIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRNEKIRM 1150 (1439)
T ss_pred HHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q ss_pred ----------HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 104 ----------EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLS----TQSKETKKLADLEANLEKVQTTLTERK 169 (531)
Q Consensus 104 ----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~i~~~e~~l~~~~ 169 (531)
.++.++..+.. +..++..+ -+.....++..+.+ .+.++...+..+...+...+. +.+..
T Consensus 1151 h~~~dkVDFSDIEkLE~qLq~--~~~kL~dA----yl~eitKqIsaLe~e~PKnltdvK~missf~d~laeiE~-LrnEr 1223 (1439)
T PF12252_consen 1151 HSGTDKVDFSDIEKLEKQLQV--IHTKLYDA----YLVEITKQISALEKEKPKNLTDVKSMISSFNDRLAEIEF-LRNER 1223 (1439)
T ss_pred ccCCCcccHHHHHHHHHHHHH--hhhhhHHH----HHHHHHHHHHHHHhhCCCchhhHHHHHHHHHhhhhHHHH-HHHHH
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy14063 170 TLCEELTTRVPAMESEIAESRARLADLTRE-----EAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQ 236 (531)
Q Consensus 170 ~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~-----~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~l~~ 236 (531)
-+.-....+--++ ..+..++.+++.+.+. ++..+..+.+.+ ......+-...+.....|..+.+
T Consensus 1224 IKkHGaSkePLDl-SDlDkLk~~LQ~iNQ~LV~~LIn~iR~slnqme--~~tf~~q~~eiq~n~~ll~~L~~ 1292 (1439)
T PF12252_consen 1224 IKKHGASKEPLDL-SDLDKLKGQLQKINQNLVKALINTIRVSLNQME--VKTFEEQEKEIQQNLQLLDKLEK 1292 (1439)
T ss_pred hhccCCCCCccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhhhhHHHHHHHHHHHHHHH
No 333
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=29.82 E-value=3.3e+02 Score=22.67 Aligned_cols=91 Identities=11% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 146 KETKKLADLEANLEKVQTTLTER----KTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESM 221 (531)
Q Consensus 146 ~~~~~i~~~~~~i~~~e~~l~~~----~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~ 221 (531)
++...+.++...++.+...|... -..+-..-..+..++.-+..++..+..+......++.++-.=-..+......+
T Consensus 30 d~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L 109 (132)
T PF10392_consen 30 DISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQL 109 (132)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred HhhhhhHHHHHHHHH
Q psy14063 222 QTSRSNNRLIDFVMQ 236 (531)
Q Consensus 222 ~~~~~~~~~l~~l~~ 236 (531)
..+....++++.+.+
T Consensus 110 ~rl~~t~~LLR~~~r 124 (132)
T PF10392_consen 110 ERLHQTSDLLRSVSR 124 (132)
T ss_pred HHHHHHHHHHHHHHH
No 334
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=29.69 E-value=4.5e+02 Score=27.01 Aligned_cols=76 Identities=18% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 135 SELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREV 214 (531)
Q Consensus 135 ~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l 214 (531)
.++-.+..+..++..+++.++.+.+.+.+.+....... ...+.+..+...++.++..+..++..++.++...-..+
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~----~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERNALSKEIGQAKRKG----EDAEALIAEVKELKEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 335
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=29.26 E-value=7.1e+02 Score=26.35 Aligned_cols=225 Identities=10% Similarity=0.114 Sum_probs=0.0
Q ss_pred ChhhhhhHHHHHhHHhhhhHHHHHHHhhccHHHHHHHHH-----HHHHHHHHHHHHHH------HHHHHHHHhhhhhhHH
Q psy14063 1 MEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF-----LELENCVQRKHNEI------YQYERYVNMKNLGEHE 69 (531)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~-----~~~~~~l~~l~~~l------~~~~~~~~~~~~~~~~ 69 (531)
+...+.++..++.....++..+..+....-......... ..+.+++..+...+ +...+....++.-..+
T Consensus 114 lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e 193 (511)
T PF09787_consen 114 LKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKE 193 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhh----
Q psy14063 70 TKVQQMEQELTANLESIKKCTDEMESAKSELKTV--EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLST---- 143 (531)
Q Consensus 70 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 143 (531)
.....+..+.. ....+-........+...+.-+ .....+.++.+ ++.....+ -...+.+...+..--..
T Consensus 194 ~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~--Yk~kA~~i--Lq~kEklI~~LK~~~~~~~~~ 268 (511)
T PF09787_consen 194 IERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQ--YKQKAQRI--LQSKEKLIESLKEGCLEEGFD 268 (511)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHH--hcCHHHHHHHHHhcccccccc
Q ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 144 -------QSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSE 216 (531)
Q Consensus 144 -------~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~ 216 (531)
+..+..+...++.++..++..+..+..++.+.+.+...-...+......+...-......+.++.-....+..
T Consensus 269 ~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~ 348 (511)
T PF09787_consen 269 SSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYH 348 (511)
T ss_pred cccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhHHH
Q psy14063 217 KRESMQTSRSNNRL 230 (531)
Q Consensus 217 ~~~~~~~~~~~~~~ 230 (531)
.+........-...
T Consensus 349 ~~ee~~~~~s~~~~ 362 (511)
T PF09787_consen 349 YREELSRQKSPLQL 362 (511)
T ss_pred HHHHHHHhcChHHH
No 336
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=29.16 E-value=1.6e+02 Score=24.04 Aligned_cols=89 Identities=10% Similarity=0.151 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 143 TQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQ 222 (531)
Q Consensus 143 ~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~ 222 (531)
....++.=|.....+++.-...+...-..+......+-....++..+...+..+...-..+...+..+..+..++..-+.
T Consensus 16 ~~k~Leeiin~W~~eLe~q~k~F~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~ 95 (116)
T PF05064_consen 16 KGKTLEEIINKWNKELEEQEKEFNEQATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLD 95 (116)
T ss_dssp ---------------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHC
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhHHHH
Q psy14063 223 TSRSNNRLI 231 (531)
Q Consensus 223 ~~~~~~~~l 231 (531)
.+......+
T Consensus 96 ~lE~~~~~l 104 (116)
T PF05064_consen 96 PLEKQVEKL 104 (116)
T ss_dssp CCCCTT---
T ss_pred HHHHHHHHH
No 337
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=29.03 E-value=4.4e+02 Score=27.06 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy14063 119 WSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEAN----LEKVQTTLTERKTLCEELTTRVPAMESEIAESRARL 193 (531)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~ 193 (531)
.++-.+ ..+...+..+++.++.+...+.++|...... .+.+..+...+.+++..++.++..++.++...-..+
T Consensus 30 d~i~~l--d~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 30 EKLIAL--DDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 338
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=28.95 E-value=2.4e+02 Score=20.80 Aligned_cols=78 Identities=13% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 137 LEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESR-ARLADLTREEAKLLDQVEKLAREVS 215 (531)
Q Consensus 137 ~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~-~~~~~l~~~~~~~~~~l~~l~~~l~ 215 (531)
...+...+...-..+..... ......+...+..+.++..-+..++-++..+. .....+...+...+..+..++.++.
T Consensus 1 f~~l~~~i~~~l~~~~~~~~--~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 1 FQALTAEIKSKLERIKNLSG--EQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHGGGS-C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred H
Q psy14063 216 E 216 (531)
Q Consensus 216 ~ 216 (531)
.
T Consensus 79 ~ 79 (79)
T PF05008_consen 79 K 79 (79)
T ss_dssp H
T ss_pred C
No 339
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=28.94 E-value=2.9e+02 Score=21.84 Aligned_cols=68 Identities=13% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 152 ADLEANLEKVQTTLT--ERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRE 219 (531)
Q Consensus 152 ~~~~~~i~~~e~~l~--~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~ 219 (531)
+..+.++...+..+. ...+.+..+.+.+....+++.++..+....-..+..+...+.....+++.+..
T Consensus 33 d~~~q~L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~~E~ 102 (102)
T PF01519_consen 33 DSNNQRLTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDKMES 102 (102)
T ss_dssp --HTTB-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 340
>PRK11546 zraP zinc resistance protein; Provisional
Probab=28.78 E-value=3.6e+02 Score=22.90 Aligned_cols=67 Identities=10% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 156 ANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQ 222 (531)
Q Consensus 156 ~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~ 222 (531)
+..+.++.-..+...+...+.+++-....+++.+...-..=...+..+..++..++.++.+.+....
T Consensus 47 EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
No 341
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=28.33 E-value=2.3e+02 Score=21.58 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14063 477 DLEVKEKRLASLETELRILSQQKMEVETQLNCTGN 511 (531)
Q Consensus 477 ~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 511 (531)
.+..+.++|+....++.+++..+..|+.+..++.+
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 342
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=28.27 E-value=3.3e+02 Score=22.18 Aligned_cols=80 Identities=13% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH------HHHHHHHHHHhHHHHHHHHHHHHHH-------HHhchh
Q psy14063 43 ENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQE------LTANLESIKKCTDEMESAKSELKTV-------EKKGKE 109 (531)
Q Consensus 43 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 109 (531)
..+...+..+|-++.-+.+..++..++.-+..++.. +.+...++.+...++.+.+.++... .+...+
T Consensus 23 ~~K~~~Ie~qI~~Ak~~gN~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~~KI~K~~ 102 (115)
T PF06476_consen 23 EAKEQAIEKQIEYAKAHGNQHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDSDKIAKRQ 102 (115)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q ss_pred hcccccchHHHHHhH
Q psy14063 110 SNVIGSKFRWSVFSA 124 (531)
Q Consensus 110 ~~l~~~~~~~~~~~~ 124 (531)
.++.+ .+.++.++
T Consensus 103 ~KL~e--a~~eL~~A 115 (115)
T PF06476_consen 103 KKLAE--AKAELKEA 115 (115)
T ss_pred HHHHH--HHHHHhhC
No 343
>PLN02678 seryl-tRNA synthetase
Probab=28.12 E-value=5.4e+02 Score=26.69 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 149 KKLADLEANLEKVQTTLTERKTLCEELTTRVPAME---SEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESM 221 (531)
Q Consensus 149 ~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~---~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~ 221 (531)
.++-.+..+...+..+++.+..+...+..++..+. .....+..+...+..++..++..+..++.++..+-..+
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 344
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=27.81 E-value=3.4e+02 Score=22.26 Aligned_cols=87 Identities=22% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
Q psy14063 131 DIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCE------------------------------------- 173 (531)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~------------------------------------- 173 (531)
..+...+..+...+..+..++..+...+..+..-++.+..-..
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~v 81 (129)
T cd00584 2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYV 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEE
Q ss_pred --HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 174 --ELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEK 217 (531)
Q Consensus 174 --~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~ 217 (531)
.+.+.+.-+..++..+...+..+...+..+...+..+...++..
T Consensus 82 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 82 EKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 345
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=27.65 E-value=4e+02 Score=22.96 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 137 LEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKL 203 (531)
Q Consensus 137 ~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~ 203 (531)
++.+-.....++..+......+..++.++...+..++.-...+..++........+...........
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~v 88 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPV 88 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
No 346
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=27.51 E-value=2.6e+02 Score=20.76 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 130 CDIAKSELEIFLSTQSKETKKLADLEANLE-KVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEA 201 (531)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~-~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~ 201 (531)
+......++.++++..+++=+|--+++.+. ........+..+--+++..+..+..++...+..+..+...+.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 347
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=27.31 E-value=3.7e+02 Score=22.49 Aligned_cols=96 Identities=18% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 138 EIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEK 217 (531)
Q Consensus 138 ~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~ 217 (531)
+........+...+..++-.+...+--......+..........+...+...+..+..++.++...+..+..-. +++.+
T Consensus 42 e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~-eyd~L 120 (139)
T PF05615_consen 42 EESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKE-EYDAL 120 (139)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q ss_pred HHHHHhhh-hhHHHHHHH
Q psy14063 218 RESMQTSR-SNNRLIDFV 234 (531)
Q Consensus 218 ~~~~~~~~-~~~~~l~~l 234 (531)
...+.... .+......|
T Consensus 121 a~~I~~~p~sR~e~~~~l 138 (139)
T PF05615_consen 121 AKKINSQPTSREETEKEL 138 (139)
T ss_pred HHHHhcCCCCHHHHHHhh
No 348
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=27.20 E-value=5.9e+02 Score=26.12 Aligned_cols=73 Identities=23% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 149 KKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESE----IAESRARLADLTREEAKLLDQVEKLAREVSEKRESM 221 (531)
Q Consensus 149 ~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~----l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~ 221 (531)
.++-.+..+...+..+++.+..+...+.+++...... ...+..+...+..++..+..++..+..++...-..+
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 349
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.18 E-value=2.5e+02 Score=22.38 Aligned_cols=42 Identities=7% Similarity=0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q psy14063 477 DLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQ 518 (531)
Q Consensus 477 ~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 518 (531)
....++.++.+++.++..++.+...+..++..+++....++.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe 69 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEE 69 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHH
No 350
>PRK15396 murein lipoprotein; Provisional
Probab=27.06 E-value=2.7e+02 Score=20.87 Aligned_cols=53 Identities=9% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhccC
Q psy14063 477 DLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTCLIDVKS 529 (531)
Q Consensus 477 ~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 529 (531)
+++.|..++..|..++..+......+........++-.....+|...-.+++.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~~sy~k 78 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQATKYRK 78 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 351
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=27.02 E-value=3.5e+02 Score=22.04 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------
Q psy14063 130 CDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERK---------------------------------------- 169 (531)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~---------------------------------------- 169 (531)
...+...+..+..++..+...+..+...+..++.-+..+.
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ 80 (129)
T cd00890 1 LQELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVY 80 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEE
Q ss_pred ------HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 170 ------TLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKL 210 (531)
Q Consensus 170 ------~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l 210 (531)
.-..-++..++.+...+..+...+..+..++..+...++..
T Consensus 81 ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 81 VEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 352
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=27.01 E-value=2.5e+02 Score=22.83 Aligned_cols=43 Identities=28% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q psy14063 479 EVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYD 521 (531)
Q Consensus 479 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 521 (531)
.-+...+..++..+..+..+...++..+....+++..++.+..
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~k 118 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKESK 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 353
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=26.96 E-value=6.7e+02 Score=25.35 Aligned_cols=217 Identities=19% Similarity=0.202 Sum_probs=0.0
Q ss_pred ChhhhhhHHHHHhHHhhhhHHHHHHHhhccHHHHHHHHHH------------------HHHHHHHHHHH--HHHHHHHHH
Q psy14063 1 MEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFL------------------ELENCVQRKHN--EIYQYERYV 60 (531)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~~------------------~~~~~l~~l~~--~l~~~~~~~ 60 (531)
++..++.+..++..-..-...+++.+..+.....-+.+-+ ++.+++..+.+ .+....+..
T Consensus 62 L~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~kE~~li~~~~~lL~~~l~~ 141 (384)
T PF03148_consen 62 LERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEKELLKEVELIENIKRLLQRTLEQ 141 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHH-------------------------------------------HHHHhHHHHHHHH
Q psy14063 61 NMKNLGEHETKVQQMEQELTANLE-------------------------------------------SIKKCTDEMESAK 97 (531)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~l~~~~~-------------------------------------------~~~~~~~~~~~~~ 97 (531)
...++..+..-...++..+..-.. .+.....++....
T Consensus 142 ~~eQl~~lr~ar~~Le~Dl~dK~~A~~ID~~~~~L~~~S~~i~~~~~~~r~~~~~~tp~~W~~~s~~ni~~a~~e~~~S~ 221 (384)
T PF03148_consen 142 AEEQLRLLRAARYRLEKDLSDKFEALEIDTQCLSLNNNSTNISYKPGSTRIPKNSSTPESWEEFSNENIQRAEKERQSSA 221 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCcccCCcccccccCCChHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH----------HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 98 SELKTV----------EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTE 167 (531)
Q Consensus 98 ~~~~~~----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~ 167 (531)
.-...+ .......-=.. +...+.+. ......+...+.....++...+..|..++..+.....-+.-
T Consensus 222 ~LR~~i~~~l~~~~~dl~~Q~~~vn~a--l~~Ri~et--~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkv 297 (384)
T PF03148_consen 222 QLREDIDSILEQTANDLRAQADAVNAA--LRKRIHET--QEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKV 297 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q ss_pred HHHHHHH-----------------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 168 RKTLCEE-----------------LTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESM 221 (531)
Q Consensus 168 ~~~~l~~-----------------l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~ 221 (531)
.++.+.. +-.++..+...+..+..++...+..+..+......+...+....+.+
T Consensus 298 aqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL 368 (384)
T PF03148_consen 298 AQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSL 368 (384)
T ss_pred HHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 354
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=26.93 E-value=2.9e+02 Score=21.11 Aligned_cols=83 Identities=12% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy14063 121 VFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTER-KTLCEELTTRVPAMESEIAESRARLADLTRE 199 (531)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~-~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~ 199 (531)
+.-+ .-.++.+...+..+......+...|......+..+.....-. .-.+.....++..+..++..+...+..++..
T Consensus 9 ~~~l--~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R 86 (92)
T PF14712_consen 9 LSLL--EPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKR 86 (92)
T ss_pred HHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q psy14063 200 EAKLLD 205 (531)
Q Consensus 200 ~~~~~~ 205 (531)
...+.+
T Consensus 87 ~~~L~q 92 (92)
T PF14712_consen 87 ADKLQQ 92 (92)
T ss_pred HHhhcC
No 355
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=26.80 E-value=8.6e+02 Score=26.53 Aligned_cols=92 Identities=14% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 138 EIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEK 217 (531)
Q Consensus 138 ~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~ 217 (531)
+....+...+..+|..++.+|..+...|...+.++...+..+...-.++.+...+--=++.--..+......+..-...+
T Consensus 75 e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl 154 (632)
T PF14817_consen 75 ENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRL 154 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhhHH
Q psy14063 218 RESMQTSRSNNR 229 (531)
Q Consensus 218 ~~~~~~~~~~~~ 229 (531)
...++.++...+
T Consensus 155 ~~~~~~~q~~~R 166 (632)
T PF14817_consen 155 QGQVEQLQDIQR 166 (632)
T ss_pred HHHHHHHHHHHh
No 356
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=26.76 E-value=3e+02 Score=21.21 Aligned_cols=82 Identities=12% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 136 ELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVS 215 (531)
Q Consensus 136 ~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~ 215 (531)
.++....++...-..++..-...-........++.++..+......+..++.....+...++..-.++...+......++
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir 84 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIR 84 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q psy14063 216 EK 217 (531)
Q Consensus 216 ~~ 217 (531)
..
T Consensus 85 ~v 86 (89)
T PF13747_consen 85 AV 86 (89)
T ss_pred HH
No 357
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=26.71 E-value=6.1e+02 Score=24.80 Aligned_cols=105 Identities=10% Similarity=0.217 Sum_probs=0.0
Q ss_pred ccchHHHHHhHHhHhHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhhh
Q psy14063 114 GSKFRWSVFSAKTRFECDIAKSELEIFLST-----QSKETKKLADLEANLEKVQTTLTERK----------TLCEELTTR 178 (531)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~i~~~e~~l~~~~----------~~l~~l~~~ 178 (531)
+ +..++..+ +..+..+..++..+... +...+..+...+.+++..+..+...+ .++++....
T Consensus 78 ~--~~~~l~~~--~a~l~~~~~~l~~~~~~~~~~~i~~~~~~l~~ak~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~~~ 153 (331)
T PRK03598 78 P--YENALMQA--KANVSVAQAQLDLMLAGYRDEEIAQARAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSS 153 (331)
T ss_pred H--HHHHHHHH--HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 179 VPAMESEIAESRARLADLT-----REEAKLLDQVEKLAREVSEKRESMQ 222 (531)
Q Consensus 179 ~~~~~~~l~~l~~~~~~l~-----~~~~~~~~~l~~l~~~l~~~~~~~~ 222 (531)
+......+......+..+. ..+...+..+......+...+..+.
T Consensus 154 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~a~~~l~ 202 (331)
T PRK03598 154 RDQAQATLKSAQDKLSQYREGNRPQDIAQAKASLAQAQAALAQAELNLQ 202 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
No 358
>KOG4572|consensus
Probab=26.65 E-value=9.3e+02 Score=26.86 Aligned_cols=172 Identities=17% Similarity=0.189 Sum_probs=0.0
Q ss_pred ChhhhhhHHHHHhHHhhhhHHHHHHHhhccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q psy14063 1 MEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA--VNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQE 78 (531)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a--~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (531)
|+..++.-|..+.+....-...+.....|-.+.++- ..|.++..-.+.. +--.+=.-.......++.......-.
T Consensus 934 leailekQNca~eeakqn~eis~Ed~kkLhaE~daeLe~~~ael~eleqk~---le~~eDea~aRh~kefE~~mrdhrse 1010 (1424)
T KOG4572|consen 934 LEAILEKQNCAHEEAKQNDEISEEDKKKLHAEIDAELEKEFAELIELEQKA---LECKEDEAFARHEKEFEIEMRDHRSE 1010 (1424)
T ss_pred HHHHHHhhhhhHHHHhhcCcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHhHhh
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH---HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy14063 79 LTANLESIKKCTDEMESAKSELKTV---EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLE 155 (531)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 155 (531)
+.+..++++.+..+++.+...+-.. ++...+=.... ...-...+ +-++....++++..+.-...-..+...+.
T Consensus 1011 lEe~kKe~eaiineiee~eaeIiQekE~el~e~efka~d--~Sd~r~ki--e~efAa~eaemdeik~~~~edrakqkei~ 1086 (1424)
T KOG4572|consen 1011 LEEKKKELEAIINEIEELEAEIIQEKEGELIEDEFKALD--ESDPRAKI--EDEFAAIEAEMDEIKDGKCEDRAKQKEID 1086 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHhhhcc--ccCcchhH--HHHHHHHHhhhhhhhhhhhhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHH
Q psy14063 156 ANLEKVQTTLTERKTLCEELTTRVPA 181 (531)
Q Consensus 156 ~~i~~~e~~l~~~~~~l~~l~~~~~~ 181 (531)
..+ .+.+++++..+++.++..+..
T Consensus 1087 k~L--~ehelenLrnEieklndkIkd 1110 (1424)
T KOG4572|consen 1087 KIL--KEHELENLRNEIEKLNDKIKD 1110 (1424)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHhhc
No 359
>PHA01750 hypothetical protein
Probab=26.55 E-value=2.4e+02 Score=20.09 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=0.0
Q ss_pred hHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy14063 117 FRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTL 165 (531)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l 165 (531)
+...+.++ .+.++.+++.++++...+++.+.+.+.++...+
T Consensus 32 lkdAvkeI--------V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 32 LKDAVKEI--------VNSELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
No 360
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.10 E-value=2e+02 Score=18.96 Aligned_cols=42 Identities=31% Similarity=0.374 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 181 AMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQ 222 (531)
Q Consensus 181 ~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~ 222 (531)
+++.....++.....+..+...+..+.+.+..++..+...+.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 361
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=25.98 E-value=3.5e+02 Score=21.72 Aligned_cols=54 Identities=22% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 166 TERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRE 219 (531)
Q Consensus 166 ~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~ 219 (531)
.++-..+..+.+++..+..++..++..+..+-.+-..++-+-..++..+.....
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 362
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=25.81 E-value=7.3e+02 Score=25.35 Aligned_cols=146 Identities=8% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHH
Q psy14063 73 QQMEQELTANLESIKKCTDEMESAKSELKTV---EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETK 149 (531)
Q Consensus 73 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (531)
.....++......+..+...+..+....... ........... +..++..+ +.++..+..+++..+........
T Consensus 92 ~~~~~~~~~~~~~l~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~--l~~~i~~~--~~~l~~~~~~~~~~~~l~~~~~~ 167 (421)
T TIGR03794 92 PELRERLQESYQKLTQLQEQLEEVRNYTGRLKEGRERHFQKSKEA--LEETIGRL--REELAALSREVGKQRGLLSRGLA 167 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHH--HHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy14063 150 KLADLEANLEKVQ------TTLTERKTLC-EELTTRVPAMESEIAESRARLADLT----REEAKLLDQVEKLAREVSEKR 218 (531)
Q Consensus 150 ~i~~~~~~i~~~e------~~l~~~~~~l-~~l~~~~~~~~~~l~~l~~~~~~l~----~~~~~~~~~l~~l~~~l~~~~ 218 (531)
.+........... .......... ...+.....+......+......+. ..+..++.++...+.++...+
T Consensus 168 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~ 247 (421)
T TIGR03794 168 TFKRDRILQQQWREEQEKYDAADKARAIYALQTKADERNLETVLQSLSQADFQLAGVAEKELETVEARIKEARYEIEELE 247 (421)
T ss_pred hhhHHHHHHHHHhhhcccHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q psy14063 219 ESMQ 222 (531)
Q Consensus 219 ~~~~ 222 (531)
..+.
T Consensus 248 ~~l~ 251 (421)
T TIGR03794 248 NKLN 251 (421)
T ss_pred HHHh
No 363
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=25.78 E-value=1.3e+02 Score=16.70 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14063 477 DLEVKEKRLASLETELRILSQ 497 (531)
Q Consensus 477 ~l~~l~~~~~~l~~~~~~~~~ 497 (531)
++..+...|..|+.++..+..
T Consensus 2 E~~rlr~rI~dLer~L~~C~~ 22 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECRR 22 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHhc
No 364
>PRK12705 hypothetical protein; Provisional
Probab=25.27 E-value=8.3e+02 Score=25.83 Aligned_cols=191 Identities=18% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHH
Q psy14063 72 VQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKL 151 (531)
Q Consensus 72 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 151 (531)
+.....-......-++....+-+.+..+..--..........+ +..++... +.++.....++..-...+......+
T Consensus 25 ~~~~~~~~~~a~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~--~e~e~~~~--~~~~~~~e~rl~~~e~~l~~~~~~l 100 (508)
T PRK12705 25 LKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQ--QRQEARRE--REELQREEERLVQKEEQLDARAEKL 100 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14063 152 ADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAES------RARLADLTREEAKLLDQVEKLAREVSEKRESMQTSR 225 (531)
Q Consensus 152 ~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l------~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ 225 (531)
...+..+...+..+......+... ..+....+... +.+-.=+..-..+++.+....-.++..--..-....
T Consensus 101 ~~~~~~l~~~~~~l~~~~~~~~~~---~~~~~~~Le~ia~lt~~eak~~l~~~~~~~~~~e~~~~i~~~e~~~~~~a~~~ 177 (508)
T PRK12705 101 DNLENQLEEREKALSARELELEEL---EKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAERK 177 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHH--------------HhhcCCCC-cccccccccccCcchHHHHHHHhccCCcEEecc
Q psy14063 226 SNNRLIDFVMQL--------------KSENRVSG-ILGRLGDLGGIDQKYDIAVSTACGALNYIVTET 278 (531)
Q Consensus 226 ~~~~~l~~l~~~--------------~~~~~~~g-v~g~l~~li~v~~~y~~Aie~~lg~l~~ivv~~ 278 (531)
.+.-+...+.+. -...+++| ++|+=|.-+. ++|++.| -.++++|
T Consensus 178 A~~ii~~aiqr~a~~~~~e~tvs~v~lp~demkGriIGreGrNir-------~~E~~tG--vdliidd 236 (508)
T PRK12705 178 AQNILAQAMQRIASETASDLSVSVVPIPSDAMKGRIIGREGRNIR-------AFEGLTG--VDLIIDD 236 (508)
T ss_pred HHHHHHHHHHHhccchhhhheeeeeecCChHhhccccCccchhHH-------HHHHhhC--CceEecC
No 365
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=25.12 E-value=7e+02 Score=25.67 Aligned_cols=73 Identities=19% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 149 KKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESE---IAESRARLADLTREEAKLLDQVEKLAREVSEKRESM 221 (531)
Q Consensus 149 ~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~---l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~ 221 (531)
.++-.+..+...+..+++.+..+...+.+++...... ...+..+...+..++..++..+..+..++...-..+
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 366
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=25.07 E-value=6.6e+02 Score=24.59 Aligned_cols=125 Identities=14% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHH---HHHHHHHHH
Q psy14063 80 TANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKE---TKKLADLEA 156 (531)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~ 156 (531)
..+...+......+..+...+..+.......++.. .+..+..+ +..+...+..+++.+.-...- +.+.+..+.
T Consensus 77 ~~~~~~l~~~~a~l~~~~~~l~~~~~~~~~~~i~~--~~~~l~~a--k~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~~ 152 (331)
T PRK03598 77 APYENALMQAKANVSVAQAQLDLMLAGYRDEEIAQ--ARAAVKQA--QAAYDYAQNFYNRQQGLWKSRTISANDLENARS 152 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHH--HHHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 157 NLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKL 210 (531)
Q Consensus 157 ~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l 210 (531)
.+...+..+......+..+...... ..+...+..+...+..+...+..+...
T Consensus 153 ~~~~a~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~l~~a~~~l~~~ 204 (331)
T PRK03598 153 SRDQAQATLKSAQDKLSQYREGNRP--QDIAQAKASLAQAQAALAQAELNLQDT 204 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCH--HHHHHHHHHHHHHHHHHHHHHHHHhcC
No 367
>PLN02320 seryl-tRNA synthetase
Probab=24.88 E-value=4.1e+02 Score=27.98 Aligned_cols=71 Identities=10% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy14063 119 WSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADL 196 (531)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l 196 (531)
.++-.+ ..+...+..+++.++.+...+.++|.. .....+.+.+..+...++.++..++.++..+..++..+
T Consensus 93 d~l~~l--d~~~r~~~~~~~~lr~ern~~sk~i~~-----~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 93 ELVLEL--YENMLALQKEVERLRAERNAVANKMKG-----KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 368
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=24.62 E-value=3.1e+02 Score=20.71 Aligned_cols=56 Identities=18% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy14063 145 SKETKKLADLEANLEKVQTTLTE---RKTLCEELTTRVPAMESEIAESRARLADLTREE 200 (531)
Q Consensus 145 ~~~~~~i~~~~~~i~~~e~~l~~---~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~ 200 (531)
.++...+..++.+++.+...+.. .....++...++..++.++...+.-+..++...
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 369
>KOG0998|consensus
Probab=24.38 E-value=2.8e+02 Score=31.44 Aligned_cols=159 Identities=8% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHhchhhcccccchHHHHHhHHhHhHHHH
Q psy14063 55 QYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTV--EKKGKESNVIGSKFRWSVFSAKTRFECDI 132 (531)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 132 (531)
..++.........+.........+..++...+...+..+...+.+.... .+..+...+.. +.+.+... ..++..
T Consensus 434 ~~~l~~~~s~~~~l~~~~~~~~~k~~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~~~~~~--~~~~~~~~--~~ei~~ 509 (847)
T KOG0998|consen 434 ANELSNLASTSQQLPAQKDTVQDKLNELDAQKSQSKEKFSTTRKKKQEEPQWISSLDNDLNL--LPLQLSND--NREISS 509 (847)
T ss_pred hhhhhhcchhhhccccccchhhhhhhhhhhhhhHHHhhhhhhhhhhhccccccccccchhhh--cccccccc--hhhHHH
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 133 AKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAR 212 (531)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~ 212 (531)
+...++.+.++...+...+.....+++.+...+..+..++.........+..........+..+................
T Consensus 510 ~~~~ln~~~qq~~~l~~~v~~~~~~ve~l~~~L~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~k~~n~~~~~s~~ 589 (847)
T KOG0998|consen 510 LEKELNELQQQLSVLEGSVKAIESQVENLQKELLDLIYEMADTRSKSTLLDDSFKVGMELFEQLLKGSKLVNGKDQNSST 589 (847)
T ss_pred HHHHHhhhHHHHhHHhhhhhhhhhhhhhhHhHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhhhhhccccccccchh
Q ss_pred HHHHH
Q psy14063 213 EVSEK 217 (531)
Q Consensus 213 ~l~~~ 217 (531)
.+...
T Consensus 590 ~l~~~ 594 (847)
T KOG0998|consen 590 ELAGY 594 (847)
T ss_pred hhhhh
No 370
>KOG3091|consensus
Probab=24.33 E-value=8.2e+02 Score=25.47 Aligned_cols=170 Identities=12% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHhchhhcccccc
Q psy14063 39 FLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTV--EKKGKESNVIGSK 116 (531)
Q Consensus 39 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~ 116 (531)
|..+..+++.- --++......|+...+++.+++..-...-.+|.+...+...+...+-.+ ..+-++..=-.
T Consensus 336 F~dL~~R~K~Q-----~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~-- 408 (508)
T KOG3091|consen 336 FEDLRQRLKVQ-----DQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYA-- 408 (508)
T ss_pred hHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--
Q ss_pred hHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy14063 117 FRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADL 196 (531)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l 196 (531)
+....+++ +.+++.+..+++.= .++..++..+.+.+......+.....-..+....++..+.--.+. +.+..+
T Consensus 409 L~~~EE~L--r~Kldtll~~ln~P----nq~k~Rl~~L~e~~r~q~~~~~~~~~~~iD~~~~~e~~e~lt~~~-e~l~~L 481 (508)
T KOG3091|consen 409 LTPDEEEL--RAKLDTLLAQLNAP----NQLKARLDELYEILRMQNSQLKLQESYWIDFDKLIEMKEHLTQEQ-EALTKL 481 (508)
T ss_pred CCccHHHH--HHHHHHHHHHhcCh----HHHHHHHHHHHHHHHhhcchhccccceeechhhhHHHHHHHHHHH-HHHHHH
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy14063 197 TREEAKLLDQV-EKLAREVSEKRESMQ 222 (531)
Q Consensus 197 ~~~~~~~~~~l-~~l~~~l~~~~~~~~ 222 (531)
-.-+....+.+ ..+...+...+..+.
T Consensus 482 v~Ilk~d~edi~~~l~E~~~~~~~~~~ 508 (508)
T KOG3091|consen 482 VNILKGDQEDIKHQLIEDLEICRKSLE 508 (508)
T ss_pred HHHHHhHHHHHHHHHHhhHHHHhhhcC
No 371
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=24.31 E-value=4.7e+02 Score=22.67 Aligned_cols=114 Identities=9% Similarity=0.106 Sum_probs=0.0
Q ss_pred hchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhh
Q psy14063 106 KGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEA--------NLEKVQTTLTERKTLCEELTT 177 (531)
Q Consensus 106 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--------~i~~~e~~l~~~~~~l~~l~~ 177 (531)
..++..+.. ....+..+ ...+.......+.....+......|+.+.. .+-.+..-...+......+..
T Consensus 18 ~rL~~~L~~--~r~al~~~--~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~~e~ 93 (158)
T PF09486_consen 18 RRLRARLAA--QRRALAAA--EAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRAAEA 93 (158)
T ss_pred HHHHHHHHH--HHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14063 178 RVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQT 223 (531)
Q Consensus 178 ~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~ 223 (531)
.+..+...+.....++......+..+...++-+...+..+......
T Consensus 94 ~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~ea 139 (158)
T PF09486_consen 94 ELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAEA 139 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
No 372
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.11 E-value=1.3e+02 Score=26.29 Aligned_cols=46 Identities=17% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 172 CEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESM 221 (531)
Q Consensus 172 l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~ 221 (531)
+++++.++...-++-.=++.++ ++...++..++.++.+++++++++
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
No 373
>PLN02320 seryl-tRNA synthetase
Probab=24.09 E-value=6.6e+02 Score=26.46 Aligned_cols=75 Identities=16% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 135 SELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREV 214 (531)
Q Consensus 135 ~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l 214 (531)
.++-.+-.+...+..+++.++.+.+...+.+.. .......+.+..+...++.++..++.++..++.++..+-..+
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-----~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKG-----KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 374
>PRK14160 heat shock protein GrpE; Provisional
Probab=23.89 E-value=3.5e+02 Score=24.78 Aligned_cols=50 Identities=16% Similarity=0.079 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhh
Q psy14063 473 SLVKDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDT 522 (531)
Q Consensus 473 ~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 522 (531)
+....+..++.++..+..++..+..++.++..++..+..+..+.+.....
T Consensus 51 ~~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 51 SNEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 375
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=23.59 E-value=9.8e+02 Score=26.10 Aligned_cols=89 Identities=12% Similarity=0.078 Sum_probs=0.0
Q ss_pred HhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 122 FSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEA 201 (531)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~ 201 (531)
+.. ..+...+..+++.++.++......|.....++...+..+...-.++.+...+.--++.--.........+..-..
T Consensus 75 e~~--~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~ 152 (632)
T PF14817_consen 75 ENE--ARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTK 152 (632)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q psy14063 202 KLLDQVEKLAR 212 (531)
Q Consensus 202 ~~~~~l~~l~~ 212 (531)
.+...++.++.
T Consensus 153 rl~~~~~~~q~ 163 (632)
T PF14817_consen 153 RLQGQVEQLQD 163 (632)
T ss_pred HHHHHHHHHHH
No 376
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=23.44 E-value=5.6e+02 Score=26.11 Aligned_cols=58 Identities=17% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 148 TKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEK 209 (531)
Q Consensus 148 ~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~ 209 (531)
...+..++.++..++.+++.+...+++.. ....++.++..++..+..++.+++.-+..
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHHh
No 377
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=23.40 E-value=3.4e+02 Score=20.73 Aligned_cols=47 Identities=9% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 164 TLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKL 210 (531)
Q Consensus 164 ~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l 210 (531)
++..+..+...++.+...+......++......+.+-...+.++.+.
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~ 71 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQ 71 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
No 378
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=22.91 E-value=3.9e+02 Score=22.33 Aligned_cols=52 Identities=6% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhc
Q psy14063 476 KDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTCLIDV 527 (531)
Q Consensus 476 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 527 (531)
..+...+..+..++.-+..++.++..-..++..|+.++..+...-..+...+
T Consensus 80 a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 80 AEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 379
>KOG3990|consensus
Probab=22.88 E-value=6e+02 Score=23.74 Aligned_cols=69 Identities=16% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy14063 150 KLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTRE-EAKLLDQVEKLAREVSEKRE 219 (531)
Q Consensus 150 ~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~-~~~~~~~l~~l~~~l~~~~~ 219 (531)
.|..++++|..++..+.+....+-+-..++..+... .+-+.+++..-.+ ..++..+.++.-..+..++.
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad-~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~ 295 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD-KEYQKELEKKHKERVQQLQKKKEESLKAIAQLRN 295 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 380
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=22.75 E-value=4.7e+02 Score=24.66 Aligned_cols=64 Identities=20% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 138 EIFLSTQSKETKKLADLEANLEKVQTTLTER--KTLCEELTTRVPAMESEIAESRARLADLTREEA 201 (531)
Q Consensus 138 ~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~--~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~ 201 (531)
++...+..+.+.+++.++...+.+.+-+... -.++-.++.++.+.+.+++.++.++..+.....
T Consensus 128 ~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 128 EDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 381
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=22.73 E-value=7.2e+02 Score=24.20 Aligned_cols=141 Identities=10% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhH
Q psy14063 68 HETKVQQMEQELTANLESIKKCTDEMESAKSELKTV--EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQS 145 (531)
Q Consensus 68 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (531)
....+..++..+......+..+...+....-....+ .+.....++.. +...+..+ +..+...+.++++.+.-..
T Consensus 53 ~~~~~~~a~a~l~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~l~~a~~~~~R~~~L~~ 128 (327)
T TIGR02971 53 RTAELDVARTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAA--QQATLNRL--EAELETAQREVDRYRSLFR 128 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhhhHHH--HHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 146 KE---TKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRA-----RLADLTREEAKLLDQVEKLAREVS 215 (531)
Q Consensus 146 ~~---~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~-----~~~~l~~~~~~~~~~l~~l~~~l~ 215 (531)
.- ..+++..+..+...+..+......+. ..+......+..+.. ++......+...+..+...+..+.
T Consensus 129 ~g~iS~~~~d~~~~~~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 129 DGAVSASDLDSKALKLRTAEEELEEALASRS---EQIDGARAALASLAEEVRETDVDLAQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHh
No 382
>KOG3647|consensus
Probab=22.71 E-value=6.6e+02 Score=23.75 Aligned_cols=155 Identities=12% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----HHhchhhcccccchHHHHHhHHhHhHHHHH
Q psy14063 59 YVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTV-----EKKGKESNVIGSKFRWSVFSAKTRFECDIA 133 (531)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 133 (531)
.+..-+...++..+-..-++++....-...+...=.-+.+-+..- .....-..-.+ +..--..+ +..++..
T Consensus 42 ~d~~~~~~q~~~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rple--l~e~Ekvl--k~aIq~i 117 (338)
T KOG3647|consen 42 NDEEDQRDQYRSLIGDKIEELRKARELATDLTQRGTTICEMLSKELLHKESLMSAAQRPLE--LLEVEKVL--KSAIQAI 117 (338)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHcCCcc--HHHHHHHH--HHHHHHH
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 134 KSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLARE 213 (531)
Q Consensus 134 ~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~ 213 (531)
..++...+..+.........+...|+....+++...+.++.+..-.-....+.+....+++++-...-..-..+.-++.+
T Consensus 118 ~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~q 197 (338)
T KOG3647|consen 118 QVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKSQ 197 (338)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred HHHH
Q psy14063 214 VSEK 217 (531)
Q Consensus 214 l~~~ 217 (531)
+...
T Consensus 198 ldd~ 201 (338)
T KOG3647|consen 198 LDDR 201 (338)
T ss_pred HHHH
No 383
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=22.56 E-value=3.5e+02 Score=20.56 Aligned_cols=69 Identities=14% Similarity=0.217 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 144 QSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAR 212 (531)
Q Consensus 144 ~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~ 212 (531)
+..+.+-++..+..+..++.++.....+..++-.....+....+.....+...-....++...+.++.+
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~~ 89 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELNS 89 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
No 384
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=22.56 E-value=3.4e+02 Score=20.41 Aligned_cols=71 Identities=10% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14063 153 DLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQT 223 (531)
Q Consensus 153 ~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~ 223 (531)
++..-++.+..++..+..+....+...++.+..+...-.+++.++..+.+++.....++..+.+-=..+..
T Consensus 1 Rl~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~ 71 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRR 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 385
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=22.45 E-value=5.6e+02 Score=22.82 Aligned_cols=119 Identities=14% Similarity=0.166 Sum_probs=0.0
Q ss_pred hhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHH
Q psy14063 109 ESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADL----------------EANLEKVQTTLTERKTLC 172 (531)
Q Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----------------~~~i~~~e~~l~~~~~~l 172 (531)
...+.. .+..-... ..-+..++.++..++.+..+++.++... ...++.+-..+++.....
T Consensus 1 rrrl~a--~qe~Qq~q--a~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~ 76 (182)
T PF15035_consen 1 RRRLDA--YQEEQQRQ--AQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRS 76 (182)
T ss_pred CcccHH--HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhH
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy14063 173 EELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLI 231 (531)
Q Consensus 173 ~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~l 231 (531)
..+..--.-+...++.....-..+..++..+......+..++.........-......+
T Consensus 77 ~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y 135 (182)
T PF15035_consen 77 EELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQY 135 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 386
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=22.27 E-value=5.4e+02 Score=22.74 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy14063 17 TRVQLVETDLKALEPELRKA-VNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQ 77 (531)
Q Consensus 17 ~~~~~~e~~~~~Le~~~~~a-~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 77 (531)
.++..++.+...+..+..+. .....+-+++..++....-.++.+....+..++..+...+.
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
No 387
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=22.27 E-value=1.1e+03 Score=25.97 Aligned_cols=219 Identities=10% Similarity=0.115 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHhHHhhhhHH-HHHHHhhccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy14063 2 EVLYGKYDEERTEKLTRVQL-VETDLKALEPELRKA-VNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQEL 79 (531)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~~-~e~~~~~Le~~~~~a-~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (531)
+.+++.++....+.+..+.. +...+..|....+.. ..+..++...... .+.+.....+.+.+.+.+
T Consensus 139 q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e------------~~~La~~q~e~d~L~~qL 206 (739)
T PF07111_consen 139 QRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGE------------AKELAEAQREADLLREQL 206 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH-----HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHH---
Q psy14063 80 TANLESIKKCTDEMESAKSELKTV-----EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKL--- 151 (531)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--- 151 (531)
......+......+..++.-+... ....|+.+... +...+..+ ..+.+.+..-.+-+.-++..+..-+
T Consensus 207 sk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~--L~~tVq~L--~edR~~L~~T~ELLqVRvqSLt~IL~LQ 282 (739)
T PF07111_consen 207 SKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREE--LLETVQHL--QEDRDALQATAELLQVRVQSLTDILTLQ 282 (739)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy14063 152 --------------------------------------------ADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIA 187 (531)
Q Consensus 152 --------------------------------------------~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~ 187 (531)
-.....+..+...+..++.++.....+..-+...+.
T Consensus 283 EeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLq 362 (739)
T PF07111_consen 283 EEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQ 362 (739)
T ss_pred HHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy14063 188 ESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQ 236 (531)
Q Consensus 188 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~l~~ 236 (531)
+...+++--+-....+..++.........++.+..........+.....
T Consensus 363 DK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~ 411 (739)
T PF07111_consen 363 DKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVS 411 (739)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 388
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=22.12 E-value=8.3e+02 Score=24.71 Aligned_cols=95 Identities=8% Similarity=0.157 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 141 LSTQSKETKKLADLEANLEKVQTTLTERKTLCE----ELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSE 216 (531)
Q Consensus 141 ~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~----~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~ 216 (531)
...+.++..-+..++..+..+..+|........ .....+..+...+.++-.++..++..-...+..+.++-..|..
T Consensus 17 e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~ 96 (383)
T PF04100_consen 17 EQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQ 96 (383)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhHHHHHHHH
Q psy14063 217 KRESMQTSRSNNRLIDFVM 235 (531)
Q Consensus 217 ~~~~~~~~~~~~~~l~~l~ 235 (531)
+...-..+.....+|+.+.
T Consensus 97 LD~AKrNLT~SIT~LkrL~ 115 (383)
T PF04100_consen 97 LDNAKRNLTQSITTLKRLQ 115 (383)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 389
>PHA02047 phage lambda Rz1-like protein
Probab=22.09 E-value=3.9e+02 Score=20.86 Aligned_cols=49 Identities=12% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhccCC
Q psy14063 482 EKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTCLIDVKSP 530 (531)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 530 (531)
.++.+.+.+++..++.++..++...+.+..+-+.-.+++.....+-..|
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~~W 81 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQNRPW 81 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
No 390
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=22.03 E-value=6.7e+02 Score=23.61 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHHHH
Q psy14063 91 DEMESAKSELKTV-EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKE--TKKLADLEANLEKVQTTLTE 167 (531)
Q Consensus 91 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~i~~~e~~l~~ 167 (531)
..++..-..+..+ .+......-.+ ...++... ..+++.++...+++..-+... -..+-.++.++...+.+|+.
T Consensus 105 ~~~~~~l~~l~~~g~v~~~~~~~~D--vT~~y~D~--~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~ 180 (262)
T PF14257_consen 105 DKFDSFLDELSELGKVTSRNISSED--VTEQYVDL--EARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQ 180 (262)
T ss_pred HHHHHHHHHHhccCceeeeeccccc--hHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhH
Q psy14063 168 RKTLCEELTTRVP 180 (531)
Q Consensus 168 ~~~~l~~l~~~~~ 180 (531)
++.++..+....+
T Consensus 181 ~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 181 LEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHhhc
No 391
>KOG3335|consensus
Probab=21.98 E-value=1.2e+02 Score=26.44 Aligned_cols=89 Identities=13% Similarity=0.116 Sum_probs=0.0
Q ss_pred EccccccccccccccCCCcccccccccccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy14063 437 VTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVSTDTSLVKDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYK 516 (531)
Q Consensus 437 vt~~g~~~~~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 516 (531)
|...+++++--..++-|++..-.--+... ..+. ..-+..+.++.+|+..+..+..++.+++..+..|...+...
T Consensus 66 ve~gadlLgE~~iF~vggg~lv~Ey~R~~--~~e~----~kee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~ 139 (181)
T KOG3335|consen 66 VEAGADLLGELFIFSVGGGVLVFEYWRQA--RKER----KKEEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKP 139 (181)
T ss_pred HHHHHHHHhhHHheeecceeeeehhHHhh--hcch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q ss_pred HhhhhhhhhhccCCC
Q psy14063 517 KQEYDTCLIDVKSPK 531 (531)
Q Consensus 517 ~~~~~~~~~~~~~~~ 531 (531)
..++..+....-++.
T Consensus 140 ~~el~~~~q~~p~~~ 154 (181)
T KOG3335|consen 140 ESELKPIRQAPPNPG 154 (181)
T ss_pred cccccccccCCCCCC
No 392
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=21.98 E-value=8e+02 Score=24.46 Aligned_cols=85 Identities=13% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 131 DIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEEL---TTRVPAMESEIAESRARLADLTREEAKLLDQV 207 (531)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l---~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l 207 (531)
..+..++...+..+.+++.++...+..++..+.+++..+.-...- ..+++.....+...+.++..++..+...+..+
T Consensus 95 ~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 174 (370)
T PRK11578 95 EQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDTAATELAVKQAQIGTIDAQIKRNQASL 174 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q psy14063 208 EKLAREVS 215 (531)
Q Consensus 208 ~~l~~~l~ 215 (531)
...+..+.
T Consensus 175 ~~~~~~l~ 182 (370)
T PRK11578 175 DTAKTNLD 182 (370)
T ss_pred HHHHHHHh
No 393
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=21.81 E-value=5.6e+02 Score=22.59 Aligned_cols=83 Identities=12% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 134 KSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLARE 213 (531)
Q Consensus 134 ~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~ 213 (531)
+.++.++-...-.++.+++.++..+...-..+....+.-..++..+..+++.+..+..+...+-.-+........++...
T Consensus 71 r~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~ 150 (189)
T TIGR02132 71 KEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKET 150 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHH
Q ss_pred HHH
Q psy14063 214 VSE 216 (531)
Q Consensus 214 l~~ 216 (531)
+..
T Consensus 151 ~~~ 153 (189)
T TIGR02132 151 IQK 153 (189)
T ss_pred HHH
No 394
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=21.79 E-value=5.3e+02 Score=22.44 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHh
Q psy14063 176 TTRVPAMESEIAESRARLADLTREEAKLLDQVEKLARE-----VSEKRESMQT 223 (531)
Q Consensus 176 ~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~-----l~~~~~~~~~ 223 (531)
+.+.+++..++..+++++..+++-+...+....+++.. +..+++.+..
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlsk 80 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSK 80 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHH
No 395
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=21.75 E-value=2e+02 Score=25.19 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 144 QSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQ 206 (531)
Q Consensus 144 ~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~ 206 (531)
+++++.+++..-++-.-++.+| .+.+.|....+.+..++.+++.++ .+++.+......
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~~~~~ 59 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL-IVQEKLRKANRK 59 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH---------------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhcc
No 396
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=21.69 E-value=3.5e+02 Score=23.63 Aligned_cols=51 Identities=14% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHhhhhhhhhhc
Q psy14063 477 DLEVKEKRLASLETELRILSQQKME-----VETQLNCTGNELKYKKQEYDTCLIDV 527 (531)
Q Consensus 477 ~l~~l~~~~~~l~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~ 527 (531)
+|.....+|.-|+-++..++..+.. +...++.+..++..+..+-+...+++
T Consensus 106 eL~s~~~ei~~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe~e~~emeL 161 (181)
T PF04645_consen 106 ELKSIKKEIEILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIKEREIREMEL 161 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
No 397
>KOG3433|consensus
Probab=21.64 E-value=5.7e+02 Score=22.65 Aligned_cols=92 Identities=15% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 137 LEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSE 216 (531)
Q Consensus 137 ~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~ 216 (531)
+...+....++..++....+.+..+.+.+++.+.....-+..-+++..++..++..++.++.++...+.--.+.-..+..
T Consensus 76 ~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~ 155 (203)
T KOG3433|consen 76 ICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVH 155 (203)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q ss_pred HHHHHHhhhhhH
Q psy14063 217 KRESMQTSRSNN 228 (531)
Q Consensus 217 ~~~~~~~~~~~~ 228 (531)
.+.......++.
T Consensus 156 ~~K~~~eaanrw 167 (203)
T KOG3433|consen 156 LEKTMAEAANRW 167 (203)
T ss_pred HHHHHHHHHhhh
No 398
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=21.34 E-value=3.6e+02 Score=21.94 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhccCC
Q psy14063 478 LEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTCLIDVKSP 530 (531)
Q Consensus 478 l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 530 (531)
|..-..+|..|..++..+......++..+..+...-.++..-+..+...+..+
T Consensus 52 Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~~~~~l 104 (116)
T PF05064_consen 52 LVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEKQVEKL 104 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 399
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=21.30 E-value=8e+02 Score=24.19 Aligned_cols=114 Identities=11% Similarity=0.124 Sum_probs=0.0
Q ss_pred hHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhhHHHHHHH
Q psy14063 117 FRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEEL----------TTRVPAMESEI 186 (531)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l----------~~~~~~~~~~l 186 (531)
++.++..+ +..+...+..++..+......+..+..++..+...+..+...+..++.. ..++++.+..+
T Consensus 84 ~~~~l~~a--~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~ 161 (346)
T PRK10476 84 YELTVAQA--QADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQ 161 (346)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy14063 187 AESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLID 232 (531)
Q Consensus 187 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~ 232 (531)
...+..+...+.++......+..+......+......+......+.
T Consensus 162 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~l~~a~~~l~ 207 (346)
T PRK10476 162 RDAEVSLNQALLQAQAAAAAVGGVDALVAQRAAREAALAIAELHLE 207 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
No 400
>KOG3850|consensus
Probab=21.28 E-value=8.4e+02 Score=24.45 Aligned_cols=101 Identities=12% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHH
Q psy14063 72 VQQMEQELTANLESIKKCTDEMESAKSELKTV---EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKET 148 (531)
Q Consensus 72 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (531)
++.+.++|+++..-.-.++..++.++..+..- -.+.++++.-. ...--+.+ ..-.+.-+.++..++.++...+
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR--~erLEEqL--NdlteLqQnEi~nLKqElasme 337 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYR--YERLEEQL--NDLTELQQNEIANLKQELASME 337 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH--hHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH--------HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14063 149 KKL--------ADLEANLEKVQTTLTERKTLCEELT 176 (531)
Q Consensus 149 ~~i--------~~~~~~i~~~e~~l~~~~~~l~~l~ 176 (531)
+++ ..+.+.++.++..|..++-.....+
T Consensus 338 ervaYQsyERaRdIqEalEscqtrisKlEl~qq~qq 373 (455)
T KOG3850|consen 338 ERVAYQSYERARDIQEALESCQTRISKLELQQQQQQ 373 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 401
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=21.15 E-value=3.2e+02 Score=22.22 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhcc
Q psy14063 486 ASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTCLIDVK 528 (531)
Q Consensus 486 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 528 (531)
+-|...+..++..+..+..+...+...+.....++..++.+++
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~k 118 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKESK 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 402
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=21.00 E-value=2.5e+02 Score=24.36 Aligned_cols=63 Identities=11% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy14063 34 RKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESA 96 (531)
Q Consensus 34 ~~a~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 96 (531)
....++.+++.++..++.++...--.+.-.+..+++.++++++++++.+.+........++..
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~ 99 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKS 99 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 403
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.98 E-value=3.8e+02 Score=20.28 Aligned_cols=55 Identities=20% Similarity=0.439 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14063 173 EELTTRVPAMESEIAESRARLAD---LTREEAKLLDQVEKLAREVSEKRESMQTSRSN 227 (531)
Q Consensus 173 ~~l~~~~~~~~~~l~~l~~~~~~---l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ 227 (531)
.++......+..++..++..+.. +.....+....++.++.++...+.-+..+..+
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 404
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=20.82 E-value=7.9e+02 Score=23.93 Aligned_cols=112 Identities=7% Similarity=0.028 Sum_probs=0.0
Q ss_pred chhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHh
Q psy14063 107 GKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERK----------TLCEELT 176 (531)
Q Consensus 107 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~----------~~l~~l~ 176 (531)
..+..+.. .+.++..+ ...+..+...+..+...+...+..+...+..+...+.+++..+ .+++...
T Consensus 77 ~~~~~l~~--a~a~l~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~a~ 152 (334)
T TIGR00998 77 NAELALAK--AEANLAAL--VRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISREELDHAR 152 (334)
T ss_pred HHHHHHHH--HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q psy14063 177 TRVPAMESEIAESRARLADLTREEA-----KLLDQVEKLAREVSEKRESMQ 222 (531)
Q Consensus 177 ~~~~~~~~~l~~l~~~~~~l~~~~~-----~~~~~l~~l~~~l~~~~~~~~ 222 (531)
..+.....++............... ..+..+...+..+...+..+.
T Consensus 153 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~~~l~ 203 (334)
T TIGR00998 153 KALLSAKAALNAAIQEQLNANQALVRGTPLKKQPAVQEAKERLKTAWLALK 203 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhh
No 405
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=20.81 E-value=5.9e+02 Score=22.53 Aligned_cols=172 Identities=15% Similarity=0.106 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHhhccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy14063 16 LTRVQLVETDLKALEPELRKA-VNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEME 94 (531)
Q Consensus 16 ~~~~~~~e~~~~~Le~~~~~a-~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 94 (531)
+.-++.++..+..||-+.-.| ..+..+..+...++..+ ..+..+..............+..++...+.+..-++++++
T Consensus 3 isALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl-~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLe 81 (178)
T PF14073_consen 3 ISALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVL-QSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLE 81 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHH-HHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 95 SAKSELKTVEKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEE 174 (531)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~ 174 (531)
-++.-+.. ...+...+ ......+..+-..-...+..--.+++.++.+.-.+...-.-.+..+..
T Consensus 82 yMRkmv~~--------------ae~er~~~--le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~ 145 (178)
T PF14073_consen 82 YMRKMVES--------------AEKERNAV--LEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKE 145 (178)
T ss_pred HHHHHHHH--------------HHHhhhHH--HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 175 LTTRVPAMESEIAESRARLADLTREEAKLL 204 (531)
Q Consensus 175 l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~ 204 (531)
++.++..-+....-++++-..++..+...+
T Consensus 146 LE~KL~eEehqRKlvQdkAaqLQt~lE~nr 175 (178)
T PF14073_consen 146 LEEKLQEEEHQRKLVQDKAAQLQTGLETNR 175 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
No 406
>PHA02047 phage lambda Rz1-like protein
Probab=20.70 E-value=4.2e+02 Score=20.69 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy14063 475 VKDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKY 515 (531)
Q Consensus 475 ~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 515 (531)
......+..+++.++..+...+++...++.+.+.-++++..
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~ 73 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDR 73 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 407
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=20.64 E-value=9.9e+02 Score=25.26 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 149 KKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEK 217 (531)
Q Consensus 149 ~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~ 217 (531)
.++..+...++.+..-+..++.-+...+..+..+..++..++.+-..+...+...+.....+..-++++
T Consensus 14 ~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i 82 (508)
T PF04129_consen 14 ENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDI 82 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
No 408
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=20.48 E-value=3.9e+02 Score=25.34 Aligned_cols=73 Identities=14% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 146 KETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRA----------RLADLTREEAKLLDQVEKLAREVS 215 (531)
Q Consensus 146 ~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~----------~~~~l~~~~~~~~~~l~~l~~~l~ 215 (531)
.+.++|..+..+...+...++.++.++.+.+.++............ ........+..-+.++.+++.+++
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~ 256 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKR 256 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q psy14063 216 EKR 218 (531)
Q Consensus 216 ~~~ 218 (531)
.++
T Consensus 257 ~Lq 259 (259)
T PF08657_consen 257 ELQ 259 (259)
T ss_pred hcC
No 409
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=20.47 E-value=4.1e+02 Score=20.48 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy14063 120 SVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTRE 199 (531)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~ 199 (531)
.+..+ ...+...-..++..-.+.-+.......+..+++.+......+..++.........++.--.++...+...-..
T Consensus 5 ~le~a--l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~ 82 (89)
T PF13747_consen 5 SLEAA--LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIET 82 (89)
T ss_pred hHHHH--HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q psy14063 200 EAKL 203 (531)
Q Consensus 200 ~~~~ 203 (531)
+..+
T Consensus 83 Ir~v 86 (89)
T PF13747_consen 83 IRAV 86 (89)
T ss_pred HHHH
No 410
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=20.42 E-value=2.7e+02 Score=18.36 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14063 481 KEKRLASLETELRILSQQKMEVETQLNCTGNE 512 (531)
Q Consensus 481 l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 512 (531)
|+.--..+++++..+..++.+++.+.+.|..+
T Consensus 10 Lqe~~d~IEqkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 10 LQEHYDNIEQKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp -----THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHh
No 411
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=20.11 E-value=4.6e+02 Score=21.01 Aligned_cols=74 Identities=16% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------HHHH
Q psy14063 140 FLSTQSKETKKLADLEANLEKVQTTLTERK----------------------------------------------TLCE 173 (531)
Q Consensus 140 ~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~----------------------------------------------~~l~ 173 (531)
++..+..++.++..+...+.++...+..+. +-..
T Consensus 1 l~~~l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~ 80 (120)
T PF02996_consen 1 LQEELENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIE 80 (120)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHH
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 174 ELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLARE 213 (531)
Q Consensus 174 ~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~ 213 (531)
-++..+..++..+..+...+..+...+..+...++++..+
T Consensus 81 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 120 (120)
T PF02996_consen 81 FLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQQ 120 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Done!