Query psy14063
Match_columns 531
No_of_seqs 354 out of 2397
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 18:37:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l51_B Structural maintenance 100.0 8.4E-30 2.9E-34 223.1 15.0 133 229-362 2-134 (166)
2 3nwc_A SMC protein; structural 99.9 1.2E-26 4.1E-31 206.0 12.7 119 229-359 23-143 (189)
3 1gxl_A SMC, chromosome segrega 99.9 3.7E-25 1.3E-29 204.3 17.0 203 207-490 7-211 (213)
4 2wd5_B Structural maintenance 99.9 4.2E-25 1.4E-29 203.5 13.8 131 227-362 29-162 (213)
5 2wd5_A Structural maintenance 99.9 1.2E-25 4.1E-30 209.3 10.0 118 243-362 51-171 (233)
6 3l51_A Structural maintenance 99.9 6.9E-25 2.4E-29 191.2 12.4 116 244-362 15-137 (161)
7 1gxj_A SMC, chromosome segrega 99.9 2.2E-23 7.5E-28 187.8 11.9 119 242-362 28-148 (186)
8 1c1g_A Tropomyosin; contractIl 98.7 4.1E-05 1.4E-09 72.3 32.0 31 6-36 9-39 (284)
9 1c1g_A Tropomyosin; contractIl 98.7 4.4E-05 1.5E-09 72.1 30.9 33 4-36 14-46 (284)
10 3l51_A Structural maintenance 98.2 5E-07 1.7E-11 78.1 3.7 133 318-453 14-161 (161)
11 3l51_B Structural maintenance 98.2 8.4E-07 2.9E-11 77.0 4.5 131 318-455 16-160 (166)
12 1gxl_A SMC, chromosome segrega 98.2 8.9E-07 3E-11 80.7 4.6 157 319-497 42-211 (213)
13 2wd5_B Structural maintenance 98.2 2.2E-06 7.6E-11 78.0 6.8 126 320-456 48-187 (213)
14 3nwc_A SMC protein; structural 97.9 4.6E-06 1.6E-10 73.6 3.7 127 318-460 33-173 (189)
15 3na7_A HP0958; flagellar bioge 97.9 0.0049 1.7E-07 57.2 24.4 10 255-264 207-216 (256)
16 2wd5_A Structural maintenance 97.7 1.4E-05 4.9E-10 73.6 2.4 130 319-455 52-197 (233)
17 1gxj_A SMC, chromosome segrega 97.4 5.6E-05 1.9E-09 67.0 2.5 131 319-455 30-174 (186)
18 2v71_A Nuclear distribution pr 97.3 0.068 2.3E-06 46.0 21.7 24 68-91 22-45 (189)
19 3vkg_A Dynein heavy chain, cyt 97.0 0.2 6.9E-06 61.7 27.5 21 333-353 2216-2238(3245)
20 3vkg_A Dynein heavy chain, cyt 96.9 0.27 9.3E-06 60.6 28.0 16 273-291 2187-2202(3245)
21 3o0z_A RHO-associated protein 96.8 0.2 6.8E-06 42.0 19.7 11 69-79 12-22 (168)
22 2v71_A Nuclear distribution pr 96.6 0.32 1.1E-05 41.8 20.1 37 64-100 11-47 (189)
23 3u1c_A Tropomyosin alpha-1 cha 96.5 0.19 6.6E-06 38.8 15.7 69 127-195 8-76 (101)
24 2efr_A General control protein 96.5 0.3 1E-05 40.7 22.5 29 68-96 26-54 (155)
25 2fxo_A Myosin heavy chain, car 96.2 0.27 9.3E-06 39.9 15.2 19 195-213 101-119 (129)
26 2dfs_A Myosin-5A; myosin-V, in 96.1 0.2 6.7E-06 56.1 18.3 9 199-207 1031-1039(1080)
27 3u59_A Tropomyosin beta chain; 95.9 0.41 1.4E-05 37.0 15.5 49 129-177 10-58 (101)
28 3u59_A Tropomyosin beta chain; 95.8 0.45 1.5E-05 36.7 15.1 25 137-161 11-35 (101)
29 2efr_A General control protein 95.4 0.97 3.3E-05 37.6 24.7 34 62-95 27-60 (155)
30 3ibp_A Chromosome partition pr 95.1 0.9 3.1E-05 41.6 15.4 40 243-284 120-161 (302)
31 3oja_B Anopheles plasmodium-re 95.1 0.47 1.6E-05 49.8 16.2 15 204-218 564-578 (597)
32 2fxo_A Myosin heavy chain, car 94.5 1.6 5.4E-05 35.3 19.2 19 65-83 15-33 (129)
33 3oja_B Anopheles plasmodium-re 94.5 0.34 1.2E-05 50.8 13.2 41 173-213 540-580 (597)
34 2eqb_B RAB guanine nucleotide 92.0 3 0.0001 31.3 13.8 42 144-185 21-62 (97)
35 3q8t_A Beclin-1; autophagy, AT 91.1 4 0.00014 30.9 14.4 74 149-222 11-84 (96)
36 2v4h_A NF-kappa-B essential mo 91.0 4.2 0.00014 31.1 12.7 43 179-221 64-106 (110)
37 2b9c_A Striated-muscle alpha t 90.4 6.7 0.00023 32.3 15.3 58 149-206 52-109 (147)
38 3q8t_A Beclin-1; autophagy, AT 89.9 5.2 0.00018 30.3 15.0 39 137-175 13-51 (96)
39 3ghg_A Fibrinogen alpha chain; 89.8 2.4 8.2E-05 42.0 11.0 90 13-102 60-156 (562)
40 2b9c_A Striated-muscle alpha t 89.0 8.6 0.00029 31.7 16.5 76 147-222 43-118 (147)
41 3s4r_A Vimentin; alpha-helix, 88.8 6.2 0.00021 29.7 10.9 35 3-37 9-43 (93)
42 2ocy_A RAB guanine nucleotide 88.2 9.9 0.00034 31.4 21.1 33 186-218 110-142 (154)
43 3oja_A Leucine-rich immune mol 87.2 22 0.00074 35.8 17.1 36 65-100 355-390 (487)
44 2v4h_A NF-kappa-B essential mo 87.0 8.7 0.0003 29.4 11.3 31 190-220 68-98 (110)
45 2ocy_A RAB guanine nucleotide 85.7 14 0.00047 30.5 19.5 20 201-220 111-130 (154)
46 3jsv_C NF-kappa-B essential mo 84.9 10 0.00035 28.2 9.9 31 189-219 52-82 (94)
47 1l8d_A DNA double-strand break 82.3 16 0.00053 28.4 13.5 21 195-215 75-95 (112)
48 3jsv_C NF-kappa-B essential mo 81.6 14 0.00048 27.4 9.6 16 152-167 43-58 (94)
49 3nmd_A CGMP dependent protein 81.0 8.5 0.00029 27.1 7.3 49 477-525 20-68 (72)
50 3ghg_A Fibrinogen alpha chain; 80.5 36 0.0012 33.8 14.1 10 249-260 209-218 (562)
51 4h22_A Leucine-rich repeat fli 79.9 17 0.00059 27.5 10.5 16 148-163 29-44 (103)
52 1m1j_B Fibrinogen beta chain; 79.2 53 0.0018 32.6 16.5 6 438-443 415-420 (464)
53 1l8d_A DNA double-strand break 78.4 21 0.00073 27.6 12.6 28 187-214 74-101 (112)
54 2xzr_A Immunoglobulin-binding 78.0 18 0.00062 26.6 15.2 27 133-159 18-44 (114)
55 2zqm_A Prefoldin beta subunit 77.9 23 0.00077 27.6 13.0 33 189-221 75-107 (117)
56 2xzr_A Immunoglobulin-binding 77.7 19 0.00064 26.6 16.8 16 178-193 70-85 (114)
57 2zqm_A Prefoldin beta subunit 77.3 24 0.00081 27.5 13.5 31 185-215 78-108 (117)
58 3l4q_C Phosphatidylinositol 3- 75.2 36 0.0012 28.6 13.4 40 183-222 102-141 (170)
59 3htk_A Structural maintenance 73.7 18 0.00061 24.4 7.8 55 476-530 5-59 (60)
60 3a7p_A Autophagy protein 16; c 70.3 43 0.0015 27.4 13.2 15 155-169 74-88 (152)
61 1m1j_B Fibrinogen beta chain; 68.1 98 0.0034 30.7 16.5 15 153-167 125-139 (464)
62 4h22_A Leucine-rich repeat fli 68.0 37 0.0013 25.7 9.9 70 26-100 4-74 (103)
63 1deq_A Fibrinogen (alpha chain 67.9 85 0.0029 29.8 16.7 13 247-261 210-222 (390)
64 2lw1_A ABC transporter ATP-bin 66.8 36 0.0012 25.1 8.6 21 196-216 61-81 (89)
65 1fxk_A Prefoldin; archaeal pro 65.7 42 0.0014 25.5 12.9 28 192-219 73-100 (107)
66 3efg_A Protein SLYX homolog; x 64.2 24 0.00081 25.5 6.5 22 200-221 30-51 (78)
67 1cii_A Colicin IA; bacteriocin 62.0 1.2E+02 0.0041 29.6 16.8 146 136-292 336-481 (602)
68 1fxk_A Prefoldin; archaeal pro 60.9 52 0.0018 25.0 12.6 26 188-213 76-101 (107)
69 2oqq_A Transcription factor HY 60.1 27 0.00093 21.4 6.0 35 478-512 5-39 (42)
70 2i1j_A Moesin; FERM, coiled-co 59.1 17 0.00059 37.5 7.1 21 201-221 436-456 (575)
71 3c9i_A Tail needle protein GP2 58.2 88 0.003 26.7 14.6 58 162-219 83-140 (242)
72 3s4r_A Vimentin; alpha-helix, 58.2 55 0.0019 24.4 11.7 28 131-158 12-39 (93)
73 1gmj_A ATPase inhibitor; coile 57.8 39 0.0013 24.6 6.5 27 497-523 51-77 (84)
74 1gd2_E Transcription factor PA 56.1 33 0.0011 24.1 5.9 38 483-520 29-66 (70)
75 1ci6_A Transcription factor AT 56.1 42 0.0014 22.9 6.4 35 484-518 24-58 (63)
76 1m1j_C Fibrinogen gamma chain; 54.9 1.6E+02 0.0054 28.7 13.7 8 437-444 342-349 (409)
77 3efg_A Protein SLYX homolog; x 54.6 57 0.0019 23.4 7.2 49 476-524 14-62 (78)
78 2yy0_A C-MYC-binding protein; 54.4 33 0.0011 22.6 5.3 31 476-506 19-49 (53)
79 4emc_A Monopolin complex subun 52.7 1.1E+02 0.0036 26.0 9.4 9 324-332 156-164 (190)
80 3ibp_A Chromosome partition pr 51.7 1.5E+02 0.005 27.3 11.9 32 327-361 130-164 (302)
81 3ghg_B Fibrinogen beta chain; 51.4 1.9E+02 0.0064 28.5 13.0 31 131-161 98-128 (461)
82 3hhm_B NISH2 P85alpha; PI3KCA, 50.9 1.8E+02 0.006 28.0 17.3 38 128-165 140-177 (373)
83 1t2k_D Cyclic-AMP-dependent tr 49.0 59 0.002 21.9 6.3 35 484-518 23-57 (61)
84 3mq9_A Bone marrow stromal ant 46.6 2.3E+02 0.0077 28.0 16.0 8 207-214 452-459 (471)
85 2oqq_A Transcription factor HY 46.2 50 0.0017 20.3 5.9 34 485-518 5-38 (42)
86 1gd2_E Transcription factor PA 46.1 31 0.001 24.3 4.4 37 477-513 30-66 (70)
87 3c9i_A Tail needle protein GP2 45.8 1.4E+02 0.0049 25.5 12.8 69 146-221 81-149 (242)
88 1fxk_C Protein (prefoldin); ar 45.2 1.1E+02 0.0039 24.2 13.4 23 193-215 97-119 (133)
89 2w83_C C-JUN-amino-terminal ki 44.8 80 0.0027 22.3 9.6 14 189-202 49-62 (77)
90 2l5g_B Putative uncharacterize 44.5 54 0.0018 20.2 5.1 21 150-170 10-30 (42)
91 4emc_A Monopolin complex subun 44.1 1.4E+02 0.0048 25.3 8.8 7 295-301 130-136 (190)
92 4etp_A Kinesin-like protein KA 43.7 74 0.0025 31.0 8.5 7 217-223 50-56 (403)
93 1jnm_A Proto-oncogene C-JUN; B 43.4 47 0.0016 22.5 5.0 35 484-518 23-57 (62)
94 2wt7_B Transcription factor MA 42.9 73 0.0025 23.6 6.2 40 484-523 49-88 (90)
95 3ljm_A Coil Ser L9C; de novo d 42.3 41 0.0014 18.3 3.9 24 479-502 4-27 (31)
96 2yy0_A C-MYC-binding protein; 41.3 59 0.002 21.3 5.0 25 476-500 26-50 (53)
97 1t2k_D Cyclic-AMP-dependent tr 41.1 80 0.0027 21.2 6.1 36 477-512 23-58 (61)
98 3m91_A Proteasome-associated A 40.7 73 0.0025 20.7 6.6 22 480-501 13-34 (51)
99 2pnv_A Small conductance calci 40.5 57 0.0019 20.4 4.5 12 503-514 22-33 (43)
100 1d7m_A Cortexillin I; coiled-c 40.4 1E+02 0.0035 22.3 15.7 19 151-169 34-52 (101)
101 2wmm_A Chromosome partition pr 40.3 23 0.00079 28.8 3.4 29 256-284 51-80 (162)
102 2yko_A LINE-1 ORF1P; RNA-bindi 39.1 64 0.0022 28.5 6.3 47 175-221 4-50 (233)
103 1ci6_A Transcription factor AT 38.9 90 0.0031 21.2 6.7 39 476-514 23-61 (63)
104 1m1j_A Fibrinogen alpha subuni 37.7 3E+02 0.01 26.9 15.9 9 132-140 69-77 (491)
105 1lwu_C Fibrinogen gamma chain; 37.5 1E+02 0.0035 28.9 8.0 44 476-519 12-55 (323)
106 2wt7_A Proto-oncogene protein 37.3 96 0.0033 21.0 6.5 33 485-517 25-57 (63)
107 1wle_A Seryl-tRNA synthetase; 35.2 2.6E+02 0.0087 28.1 11.0 25 191-215 123-147 (501)
108 1kd8_A GABH AIV, GCN4 acid bas 33.9 58 0.002 19.2 3.5 12 40-51 18-29 (36)
109 1wle_A Seryl-tRNA synthetase; 33.5 3.2E+02 0.011 27.3 11.4 28 194-221 119-146 (501)
110 3he5_A Synzip1; heterodimeric 32.8 82 0.0028 18.9 6.9 43 477-519 4-46 (49)
111 1lwu_C Fibrinogen gamma chain; 32.8 1.2E+02 0.0039 28.6 7.5 6 438-443 263-268 (323)
112 2xnx_M M protein, M1-BC1; cell 31.9 2E+02 0.0069 23.2 9.6 44 59-102 62-105 (146)
113 1lq7_A Alpha3W; three helix bu 31.3 51 0.0018 21.2 3.3 13 88-100 29-41 (67)
114 3qne_A Seryl-tRNA synthetase, 31.3 3E+02 0.01 27.4 10.6 7 284-290 190-196 (485)
115 1xaw_A Occludin; coiled-coil, 30.8 2.1E+02 0.0072 23.0 8.5 26 5-30 61-86 (140)
116 1jnm_A Proto-oncogene C-JUN; B 30.2 68 0.0023 21.7 4.1 32 478-509 24-55 (62)
117 2aze_B Transcription factor E2 29.8 1.5E+02 0.0052 22.6 6.5 41 476-516 6-46 (106)
118 3fld_A Protein TRAI, DNA helic 28.5 66 0.0023 25.9 4.2 30 345-374 105-135 (153)
119 3m9b_A Proteasome-associated A 28.0 57 0.002 29.2 4.3 41 476-516 54-94 (251)
120 2dq0_A Seryl-tRNA synthetase; 27.8 2.5E+02 0.0087 27.7 9.5 7 284-290 198-204 (455)
121 3qne_A Seryl-tRNA synthetase, 27.8 2.6E+02 0.0088 27.9 9.4 23 193-215 80-102 (485)
122 1g6u_A Domain swapped dimer; d 27.6 1E+02 0.0035 18.4 4.9 23 476-498 20-42 (48)
123 3d5a_X RF1, peptide chain rele 27.3 1.4E+02 0.0049 28.3 7.1 32 18-49 30-61 (354)
124 4fi5_A Nucleoprotein; structur 26.6 2.2E+02 0.0074 21.8 9.6 19 204-222 68-86 (113)
125 2dq0_A Seryl-tRNA synthetase; 26.6 2.5E+02 0.0087 27.7 9.3 23 193-215 78-100 (455)
126 2ic9_A Nucleocapsid protein; h 26.5 2E+02 0.0068 21.4 9.3 18 205-222 52-69 (96)
127 2gjh_A Designed protein; oblig 26.1 19 0.00065 22.8 0.6 21 435-455 35-55 (62)
128 1ses_A Seryl-tRNA synthetase; 25.9 3.5E+02 0.012 26.3 10.1 7 284-290 171-177 (421)
129 2pnv_A Small conductance calci 25.8 1.3E+02 0.0043 18.8 4.5 17 495-511 21-37 (43)
130 1deb_A APC protein, adenomatou 25.5 1.4E+02 0.0046 19.1 7.8 36 134-169 9-44 (54)
131 3m9b_A Proteasome-associated A 24.3 1.1E+02 0.0037 27.5 5.3 43 482-524 53-95 (251)
132 1fxk_C Protein (prefoldin); ar 23.8 2.7E+02 0.0091 21.9 13.4 38 180-217 91-128 (133)
133 3u06_A Protein claret segregat 23.1 2.1E+02 0.0071 27.9 7.7 6 263-268 130-135 (412)
134 3u06_A Protein claret segregat 23.0 2.3E+02 0.008 27.5 8.1 11 207-217 47-57 (412)
135 1ses_A Seryl-tRNA synthetase; 22.6 2.4E+02 0.0082 27.6 8.1 24 191-214 71-94 (421)
136 3sjb_C Golgi to ER traffic pro 22.5 1.4E+02 0.0049 22.1 4.8 18 36-53 22-39 (93)
137 2zdi_C Prefoldin subunit alpha 22.1 3.1E+02 0.011 22.1 11.9 29 138-166 19-50 (151)
138 3lss_A Seryl-tRNA synthetase; 22.1 4.7E+02 0.016 26.0 10.1 7 284-290 213-219 (484)
139 3q0x_A Centriole protein; cent 22.0 3.9E+02 0.013 23.5 8.4 15 200-214 194-208 (228)
140 1qys_A TOP7; alpha-beta, novel 21.0 20 0.0007 25.2 0.0 22 434-455 78-99 (106)
141 2wt7_B Transcription factor MA 20.7 2.6E+02 0.0088 20.6 10.2 7 145-151 31-37 (90)
142 2y3a_B Phosphatidylinositol 3- 20.2 5.1E+02 0.018 23.8 11.7 46 177-222 90-135 (302)
No 1
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=99.96 E-value=8.4e-30 Score=223.14 Aligned_cols=133 Identities=48% Similarity=0.875 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhhcCCCCcccccccccccCcchHHHHHHHhccCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCCcc
Q psy14063 229 RLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQY 308 (531)
Q Consensus 229 ~~l~~l~~~~~~~~~~gv~g~l~~li~v~~~y~~Aie~~lg~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~~~ 308 (531)
++++.+++.+..+.++|++|+|+++++|+++|+.||++++|.+++|||++.++|..||++|++++.||+||+||+.+++.
T Consensus 2 ~~~~~l~~~~~~~~~~Gv~G~v~dLi~v~~~y~~Aie~alg~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpL~~i~~~ 81 (166)
T 3l51_B 2 KVLDAIIQEKKSGRIPGIYGRLGDLGAIDEKYDIAISSCCHALDYIVVDSIDTAQECVNFLKKHNIGIATFIGLDKMTVW 81 (166)
T ss_dssp HHHHHHHHHHHHTSSTTEEEEGGGSCBCCGGGHHHHHHHCGGGGSEEESCHHHHHHHHHHHHHTTCCCCCEEEGGGTGGG
T ss_pred hHHHHHHHHHHhCCCCCceEEHHHheeeCHHHHHHHHHHHhhCceEEECCHHHHHHHHHHHHHcCCCeEEEEECcccccc
Confidence 35677777766677899999999999999999999999999889999999999999999999999999999999988653
Q ss_pred cccccCcCCCCccccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhh
Q psy14063 309 HSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYS 362 (531)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~ 362 (531)
....+ ....|++..++.|+|+|+++.|++++.++||+++||+|++.|..+++.
T Consensus 82 ~~~~~-~~~~~~~~~~a~dlv~~~d~~~~~a~~~llg~tlVv~dl~~A~~~~~~ 134 (166)
T 3l51_B 82 AKKMS-KIQTPENTPRLFDLVKVKNEEIRQAFYFALRDTLVANNLDQATRVAYQ 134 (166)
T ss_dssp TTSCC-CCCCGGGCCBHHHHCBCSCHHHHHHHHHHHTTCEEESSHHHHHHHHBC
T ss_pred ccccc-ccccccchhhHhheeeCCcHHHHHHHHHHcCCEEEECCHHHHHHHHHh
Confidence 21111 122345566789999996579999999999999999999999887654
No 2
>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus}
Probab=99.94 E-value=1.2e-26 Score=206.05 Aligned_cols=119 Identities=27% Similarity=0.498 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhhcCCCCcccccccccccCcc-hHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCC
Q psy14063 229 RLIDFVMQLKSENRVSGILGRLGDLGGIDQK-YDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQ 306 (531)
Q Consensus 229 ~~l~~l~~~~~~~~~~gv~g~l~~li~v~~~-y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~ 306 (531)
..++++++ ..++|++|+|+++++|+++ |+.||+++|| .+++|||++.++|..||++|+.++.||+||+|++.++
T Consensus 23 ~~v~~l~~----~~~~gv~G~l~dLi~V~~~kye~Ave~aLG~~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpl~~i~ 98 (189)
T 3nwc_A 23 RAAEELKR----SGIGGIYGTLAELIKVKDEAYALAIEVALGNRADNVVVEDELVAEKAIKYLKEHKLGRLTFLPLNKIK 98 (189)
T ss_dssp THHHHHTT----SCCCSEEEEHHHHCEESCGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHTTCCCCCEEETTTCC
T ss_pred HHHHHHHh----cCCCCceEEHHHheeeChhhHHHHHHHHhccccccEEECCHHHHHHHHHHHHhcCCCceEEEECCccc
Confidence 44555543 2478999999999999988 9999999999 9999999999999999999999999999999999876
Q ss_pred cccccccCcCCCCccccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHH
Q psy14063 307 QYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRI 359 (531)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~ 359 (531)
++. .+.++++. +.|+|+| |+.|.+++.++||+++||+|++.|..+
T Consensus 99 ~~~------~~~~~g~~-a~dlv~~-d~~~~~a~~~llg~tlvv~dl~~A~~l 143 (189)
T 3nwc_A 99 PKH------VDSSVGLP-AVDVIEY-DQKIENAVKFALGDTVIVNSMEEARPH 143 (189)
T ss_dssp CCC------CCSCSSEE-GGGGEEC-CGGGHHHHHHHHTTEEEESCSGGGGGG
T ss_pred ccc------CCCCCCcE-Eeeeecc-CHHHHHHHHHHhCCEEEECCHHHHHHH
Confidence 531 11222333 8899999 789999999999999999999998754
No 3
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1
Probab=99.93 E-value=3.7e-25 Score=204.30 Aligned_cols=203 Identities=23% Similarity=0.368 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCCcccccccccccCcchHHHHHHHhc-cCCcEEecchHHHHHH
Q psy14063 207 VEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACG-ALNYIVTETVEAGEAV 285 (531)
Q Consensus 207 l~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~gv~g~l~~li~v~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~ 285 (531)
+..++.++..++............+..++.. ...++|++|+|+++++|+++|+.||+++|| .+++|||++..++..+
T Consensus 7 ~~~~~~r~~~L~~~~~~~~~~~~~~~~ll~~--~~~~~g~~g~l~~li~v~~~~e~Ave~aLg~~l~~ivv~~~~~a~~~ 84 (213)
T 1gxl_A 7 LREIQFEKEMIERDMREYRGFSRAVRAVFEE--KERFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAI 84 (213)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSCHHHHHHHTT--TTSCTTEEEEGGGTCBCCHHHHHHHHHHHGGGGGCEEESSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh--hhhhCCCceehhheeeeCHHHHHHHHHHHHHhhcEEEECCHHHHHHH
Confidence 3334444444443332222222344444432 124678999999999999999999999999 9999999999999999
Q ss_pred HHHHHHcCCCceeEEeCcCCCcccccccCcCC-CCccccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhhCC
Q psy14063 286 IAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYR-TPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGG 364 (531)
Q Consensus 286 i~~Lk~~~~gr~tflpl~~~~~~~~~~~~~~~-~~~~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~~~ 364 (531)
+++|+.++.||++|+|++.+.+.. ....... .+++.+++.++|+| ++.|.+++.++||++++|+|++.|..+.+..+
T Consensus 85 i~~lk~~~~gr~~~lpl~~~~~~~-~~~~~~~~~~g~~~~~~d~v~~-~~~~~~~~~~~lg~~~vv~~l~~A~~~~~~~~ 162 (213)
T 1gxl_A 85 VEFLKQNEAGRVTILPLDLIDGSF-NRISGLENERGFVGYAVDLVKF-PSDLEVLGGFLFGNSVVVETLDDAIRMKKKYR 162 (213)
T ss_dssp HHHHHHHTCEEEEEEETTTSCCCC-CCCTTGGGSTTEEEEGGGGCBC-CSTTHHHHHHHSSSEEEESSHHHHHHHHHHTC
T ss_pred HHHHHhcCCCceEEEEchhcCCCC-ccchhhhcCCCcHHHHHHHhcC-CHHHHHHHHHHhCCEEEECCHHHHHHHHHhcC
Confidence 999999999999999998865431 0000011 13445678899999 67899999999999999999999988765421
Q ss_pred CccEEccCCceecCCCceecccccccccccccCCccccccccccccccCchhHHhhHHHHHhccccCCceeEEccccccc
Q psy14063 365 GYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAII 444 (531)
Q Consensus 365 ~~~~vt~~G~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~ 444 (531)
++.++||++|+++
T Consensus 163 -------------------------------------------------------------------~~~~~VT~~G~~~ 175 (213)
T 1gxl_A 163 -------------------------------------------------------------------LNTRIATLDGELI 175 (213)
T ss_dssp -------------------------------------------------------------------SSCEEECTTSCEE
T ss_pred -------------------------------------------------------------------CCceEEecCCeEE
Confidence 4567899999999
Q ss_pred cccccccCCCcccccccccccccccccCCcHHHHHHHHHHHHHHHH
Q psy14063 445 EPSGTMSGGGSNPIRGLMGRKATVSTDTSLVKDLEVKEKRLASLET 490 (531)
Q Consensus 445 ~~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~ 490 (531)
+++|+|+||+.....+.+.++ .++..++.++.+++.
T Consensus 176 ~~~G~~~gg~~~~~~~~l~~~----------~el~~l~~~l~~~~~ 211 (213)
T 1gxl_A 176 SGRGAITGGREERSSNVFERR----------IKLKHLEQEMEETER 211 (213)
T ss_dssp CTTSCEEECCCSSCCCTTHHH----------HHHHHHHHHHC----
T ss_pred cCCceEECCCCccccchhhHH----------HHHHHHHHHHHHHHh
Confidence 999999988742122333332 555555555554443
No 4
>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=99.92 E-value=4.2e-25 Score=203.45 Aligned_cols=131 Identities=15% Similarity=0.287 Sum_probs=103.2
Q ss_pred hHHHHHHHHHH-HhhcCCCCcccccccccccCcchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcC-CCceeEEeCc
Q psy14063 227 NNRLIDFVMQL-KSENRVSGILGRLGDLGGIDQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQN-VGRVNVIPLD 303 (531)
Q Consensus 227 ~~~~l~~l~~~-~~~~~~~gv~g~l~~li~v~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~-~gr~tflpl~ 303 (531)
..++++.+.+. ...+.++|++|+|+++++|+++|+.||+++|| .+++|||++..++..|+++|+..+ .||+||+|++
T Consensus 29 ~~~~~~~l~~~~~~~~~~~g~~g~l~dli~v~~~~e~Ave~aLG~~l~~iVV~~~~~a~~~i~~l~~~~~~gr~tflpl~ 108 (213)
T 2wd5_B 29 INKVLEHFRRKGINQHVQNGYHGIVMNNFECEPAFYTCVEVTAGNRLFYHIVDSDEVSTKILMEFNKMNLPGEVTFLPLN 108 (213)
T ss_dssp HHHHHHHHHHHTCCHHHHTTEEEEGGGSEECCGGGHHHHHHHHTTGGGCEEESCHHHHHHHHHHHHHTTCCCCEEEEETT
T ss_pred HHHHHHHHHhhhhhhccCCCceeeHHHhcccCHHHHHHHHHHHhHHhhEEEECCHHHHHHHHHHHHhCCCCcceEEEECc
Confidence 34455555432 01123578999999999999999999999999 999999999999999999999987 9999999998
Q ss_pred CCCcccccccCcCCCCccccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhh
Q psy14063 304 KMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYS 362 (531)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~ 362 (531)
.+.+.... .+.. .++.++.++|+| ++.|.+++.++||++++|+|++.|..+.+.
T Consensus 109 ~~~~~~~~---~~~~-~~~~~l~~~v~~-~~~~~~~~~~~l~~~~vv~~l~~A~~l~~~ 162 (213)
T 2wd5_B 109 KLDVRDTA---YPET-NDAIPMISKLRY-NPRFDKAFKHVFGKTLICRSMEVSTQLARA 162 (213)
T ss_dssp TCCCCCCC---CCCC-SSEEEGGGGCEE-CGGGHHHHHHHHTTEEEESSHHHHHHHHHH
T ss_pred ccCcccCC---CCCC-CCceeHHHHccC-cHHHHHHHHHHcCCEEEECCHHHHHHHHHh
Confidence 86543210 0111 233347799999 688999999999999999999999877643
No 5
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=99.92 E-value=1.2e-25 Score=209.25 Aligned_cols=118 Identities=28% Similarity=0.472 Sum_probs=99.0
Q ss_pred CCC-ccccccccccc-CcchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCCcccccccCcCCCC
Q psy14063 243 VSG-ILGRLGDLGGI-DQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTP 319 (531)
Q Consensus 243 ~~g-v~g~l~~li~v-~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~~~~~~~~~~~~~~ 319 (531)
++| ++|+|+++++| +++|+.||+++|| .+++|||++..+|..|+++|+..+.||+||+|++.+.+...+. ....+
T Consensus 51 ~~g~v~G~l~dli~v~~~~ye~Ave~aLG~~l~~iVV~~~~~a~~~i~~Lk~~~~Gr~tflpl~~i~~~~~~~--~~~~~ 128 (233)
T 2wd5_A 51 YPGSVYGRLIDLCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTDE--KLREL 128 (233)
T ss_dssp SGGGEEEEHHHHEEESSGGGHHHHHHHHGGGGSCEEESCHHHHHHHHHHHHHTTCCCEEEEETTTCCCCCCCG--GGGGC
T ss_pred CCCCeeeeHHHhceeCcHHHHHHHHHHHHHhhcEEEECCHHHHHHHHHHHHhcCCCCeEEEECcccccCCcch--hccCC
Confidence 678 99999999998 7999999999999 8999999999999999999999999999999999875322110 01112
Q ss_pred ccccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhh
Q psy14063 320 ENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYS 362 (531)
Q Consensus 320 ~~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~ 362 (531)
.++.++.++|.|+++.|.+++.++||++++|+|++.|..+.+.
T Consensus 129 ~g~~~l~dlV~~~~~~~~~~~~~~Lg~~~vv~dl~~A~~l~~~ 171 (233)
T 2wd5_A 129 KGAKLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFG 171 (233)
T ss_dssp SSCEESGGGEEESSGGGHHHHHHHTTTCEEESSHHHHHHHHHS
T ss_pred CCchHHHHhhhCCcHHHHHHHHHHhCCEEEECCHHHHHHHHHh
Confidence 3345788999994478999999999999999999999887654
No 6
>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus}
Probab=99.92 E-value=6.9e-25 Score=191.25 Aligned_cols=116 Identities=19% Similarity=0.338 Sum_probs=97.9
Q ss_pred CCccccccccccc-CcchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCCccccccc-----CcC
Q psy14063 244 SGILGRLGDLGGI-DQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCY-----DKY 316 (531)
Q Consensus 244 ~gv~g~l~~li~v-~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~~~~~~~~-----~~~ 316 (531)
+|++|+|+++++| +++|+.||+++|| .++++||++.++|..||+++ +..||+||+||+.+++...... ...
T Consensus 15 ~gv~G~v~dLi~v~d~~y~~Ave~alG~~l~~iVVd~~~~A~~~i~~~--~~~GR~tflpL~~i~~~~~~~~~~~~~~~~ 92 (161)
T 3l51_A 15 NSVKGLVASLINVKDNSTATALEVVAGERLYNVVVDTEVTAKKLLEKG--ELKRRYTIIPLNKISARCIAPETLRVAQNL 92 (161)
T ss_dssp GGEEEEGGGSCEESCGGGHHHHHHHHGGGGGCEEESCHHHHHHHHHHS--CCSSCEEEEETTTCCCCCCCHHHHHHHHHH
T ss_pred CccEEEHHHheeeCchhHHHHHHHHhccccceEEECCHHHHHHHHHHH--hhCCcEEEEECccccccCcCHHHHhhhhhc
Confidence 6799999999999 5899999999999 99999999999999999986 4679999999998865321100 001
Q ss_pred CCCccccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhh
Q psy14063 317 RTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYS 362 (531)
Q Consensus 317 ~~~~~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~ 362 (531)
..+++++++.|+|+| ++.|++++.++||+++||+|++.|..+.+.
T Consensus 93 ~~~~~~~~a~dlv~~-d~~~~~a~~~llg~tlv~~dl~~A~~~~~~ 137 (161)
T 3l51_A 93 VGPDNVHVALSLVDY-KPELQKGMEFVFGTTFVCNNMDNAKKVAFD 137 (161)
T ss_dssp HCTTSEEEGGGGEEC-CGGGHHHHHHHHTTCEEESSHHHHHHHHHC
T ss_pred CCCcchhHHHHHhcC-CHHHHHHHHHHcCCEEEECCHHHHHHHHHh
Confidence 125567789999999 799999999999999999999999987764
No 7
>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A
Probab=99.89 E-value=2.2e-23 Score=187.81 Aligned_cols=119 Identities=24% Similarity=0.407 Sum_probs=99.9
Q ss_pred CCCCcccccccccccCcchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCCcccccccCcCC-CC
Q psy14063 242 RVSGILGRLGDLGGIDQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYR-TP 319 (531)
Q Consensus 242 ~~~gv~g~l~~li~v~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~~~~~~~~~~~~-~~ 319 (531)
.++|++|+|+++++|+++|+.||+++|| .++++||++..++..+|++|+.++.||+||+|++.+.+.. ....... .+
T Consensus 28 ~~~g~~g~l~~li~v~~~~e~Ave~aLG~~l~~ivv~~~~~a~~~i~~lk~~~~gr~tflpl~~~~~~~-~~~~~~~~~~ 106 (186)
T 1gxj_A 28 RFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSF-NRISGLENER 106 (186)
T ss_dssp GCTTEEEEHHHHCBCCGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHTCCCEEEEETTTCCCCC-CCCTTGGGST
T ss_pred hhCCcceehhheeccCHHHHHHHHHHHHHhhhEEEECCHHHHHHHHHHHHhcCCCceEEEEccccCCCc-ccchhcccCC
Confidence 3678999999999999999999999999 9999999999999999999999999999999999875431 1000011 13
Q ss_pred ccccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhh
Q psy14063 320 ENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYS 362 (531)
Q Consensus 320 ~~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~ 362 (531)
++.+++.|+|+| ++.|.+++.++||++++|+|++.|..+.+.
T Consensus 107 g~~~~~~dlv~~-~~~~~~~~~~~lg~~~v~~~l~~A~~l~~~ 148 (186)
T 1gxj_A 107 GFVGYAVDLVKF-PSDLEVLGGFLFGNSVVVETLDDAIRMKKK 148 (186)
T ss_dssp TEEEEHHHHCBC-CGGGHHHHHHHHTTCEEESCHHHHHHHHHH
T ss_pred CchHHHHHHccC-CHHHHHHHHHHcCCEEEECCHHHHHHHHHh
Confidence 445567899999 688999999999999999999999887654
No 8
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.73 E-value=4.1e-05 Score=72.35 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=13.6
Q ss_pred hhHHHHHhHHhhhhHHHHHHHhhccHHHHHH
Q psy14063 6 GKYDEERTEKLTRVQLVETDLKALEPELRKA 36 (531)
Q Consensus 6 ~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a 36 (531)
..+...+.....++..+..++..++.....+
T Consensus 9 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 39 (284)
T 1c1g_A 9 QMLKLDKENALDRADEAEADKKAAEDRSKQL 39 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 9
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.70 E-value=4.4e-05 Score=72.14 Aligned_cols=33 Identities=21% Similarity=0.055 Sum_probs=18.0
Q ss_pred hhhhHHHHHhHHhhhhHHHHHHHhhccHHHHHH
Q psy14063 4 LYGKYDEERTEKLTRVQLVETDLKALEPELRKA 36 (531)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a 36 (531)
.++.+...+.+....+..+...+..++..+..+
T Consensus 14 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~ 46 (284)
T 1c1g_A 14 DKENALDRADEAEADKKAAEDRSKQLEDELVSL 46 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555544
No 10
>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus}
Probab=98.24 E-value=5e-07 Score=78.09 Aligned_cols=133 Identities=21% Similarity=0.286 Sum_probs=93.4
Q ss_pred CCccccccccceecCchHHHHHHHHhhCC---eEEEcCHHHHHHHHhh---CCCccEEccCCceecCCCceecc--cccc
Q psy14063 318 TPENVPRLIDLIQVQDEKIRLAFYFATRE---TLVAQDLNQAKRIGYS---GGGYRMVTLEGAIIEPSETLVAQ--DLNQ 389 (531)
Q Consensus 318 ~~~~~~~~~d~i~~~~~~~~~~~~~llg~---~~v~~~l~~A~~~~~~---~~~~~~vt~~G~~~~~~~~~~~~--~~~~ 389 (531)
.+|.+|++.+++.+++++|+.+++.+||. .+||++.++|..++.. .++..|++++... ... +... ..+.
T Consensus 14 ~~gv~G~v~dLi~v~d~~y~~Ave~alG~~l~~iVVd~~~~A~~~i~~~~~~GR~tflpL~~i~--~~~-~~~~~~~~~~ 90 (161)
T 3l51_A 14 RNSVKGLVASLINVKDNSTATALEVVAGERLYNVVVDTEVTAKKLLEKGELKRRYTIIPLNKIS--ARC-IAPETLRVAQ 90 (161)
T ss_dssp GGGEEEEGGGSCEESCGGGHHHHHHHHGGGGGCEEESCHHHHHHHHHHSCCSSCEEEEETTTCC--CCC-CCHHHHHHHH
T ss_pred cCccEEEHHHheeeCchhHHHHHHHHhccccceEEECCHHHHHHHHHHHhhCCcEEEEECcccc--ccC-cCHHHHhhhh
Confidence 45678899999999558999999999985 6899999999877653 2567777776421 100 0000 0000
Q ss_pred -cccccccCCccccccccccc-----cccCchhHHhhHHHHHhccccC-CceeEEccccccccccccccCC
Q psy14063 390 -AKRIGYSGGGYRMVTLEGAI-----IEPSETLVAQDLNQAKRIGYSG-GGYRMVTLEGAIIEPSGTMSGG 453 (531)
Q Consensus 390 -~~~~g~~~~~~~~v~~~~~~-----~l~~~~~~~~~l~~a~~~~~~~-~~~~~vt~~g~~~~~~g~~~gg 453 (531)
...++.+++++++|++++.+ ++|++++||+|++.|.++++.. +++++||++|++++++|+|+||
T Consensus 91 ~~~~~~~~~~a~dlv~~d~~~~~a~~~llg~tlv~~dl~~A~~~~~~~~~~~r~VTldGd~i~~~G~~tGG 161 (161)
T 3l51_A 91 NLVGPDNVHVALSLVDYKPELQKGMEFVFGTTFVCNNMDNAKKVAFDKRIMTRTVTLGGDVFDPHGTLSGG 161 (161)
T ss_dssp HHHCTTSEEEGGGGEECCGGGHHHHHHHHTTCEEESSHHHHHHHHHCTTTCCCEEETTSCEECCC------
T ss_pred hcCCCcchhHHHHHhcCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCCeEEeCCCeEEcCCEEEecC
Confidence 01245556778888887765 7999999999999999877664 4789999999999999999987
No 11
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=98.21 E-value=8.4e-07 Score=77.00 Aligned_cols=131 Identities=30% Similarity=0.407 Sum_probs=97.7
Q ss_pred CCccccccccceecCchHHHHHHHHhhCC--eEEEcCHHHHHHHHh---h--CCCccEEccCCceecCCCceeccccccc
Q psy14063 318 TPENVPRLIDLIQVQDEKIRLAFYFATRE--TLVAQDLNQAKRIGY---S--GGGYRMVTLEGAIIEPSETLVAQDLNQA 390 (531)
Q Consensus 318 ~~~~~~~~~d~i~~~~~~~~~~~~~llg~--~~v~~~l~~A~~~~~---~--~~~~~~vt~~G~~~~~~~~~~~~~~~~~ 390 (531)
.+|.+|++.+++.+ +++|+.++..+||. .+||+|.++|..++. . .++..|++++...... . +.+..
T Consensus 16 ~~Gv~G~v~dLi~v-~~~y~~Aie~alg~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpL~~i~~~~-~-----~~~~~ 88 (166)
T 3l51_B 16 IPGIYGRLGDLGAI-DEKYDIAISSCCHALDYIVVDSIDTAQECVNFLKKHNIGIATFIGLDKMTVWA-K-----KMSKI 88 (166)
T ss_dssp STTEEEEGGGSCBC-CGGGHHHHHHHCGGGGSEEESCHHHHHHHHHHHHHTTCCCCCEEEGGGTGGGT-T-----SCCCC
T ss_pred CCCceEEHHHheee-CHHHHHHHHHHHhhCceEEECCHHHHHHHHHHHHHcCCCeEEEEECccccccc-c-----ccccc
Confidence 35778899999999 69999999999984 589999999876653 2 3677888876432110 0 00111
Q ss_pred ccccccCCcccccccc-ccc-----cccCchhHHhhHHHHHhcccc-CCceeEEccccccccccccccCCCc
Q psy14063 391 KRIGYSGGGYRMVTLE-GAI-----IEPSETLVAQDLNQAKRIGYS-GGGYRMVTLEGAIIEPSGTMSGGGS 455 (531)
Q Consensus 391 ~~~g~~~~~~~~v~~~-~~~-----~l~~~~~~~~~l~~a~~~~~~-~~~~~~vt~~g~~~~~~g~~~gg~~ 455 (531)
..++.+.+++++|+++ +.+ ++|++++||+|++.|.++++. .+++++||++|++++++|+|+||+.
T Consensus 89 ~~~~~~~~a~dlv~~~d~~~~~a~~~llg~tlVv~dl~~A~~~~~~~~~~~r~VTldGdli~~~G~~tGG~~ 160 (166)
T 3l51_B 89 QTPENTPRLFDLVKVKNEEIRQAFYFALRDTLVANNLDQATRVAYQRDRRWRVVTLQGQIIEQSGTMSGGLE 160 (166)
T ss_dssp CCGGGCCBHHHHCBCSCHHHHHHHHHHHTTCEEESSHHHHHHHHBCSSCBCCEEETTSCEECTTCCEEECCG
T ss_pred ccccchhhHhheeeCCcHHHHHHHHHHcCCEEEECCHHHHHHHHHhhCCCcEEEECCCEEEeCCEEEECCCc
Confidence 1233344677888874 444 889999999999999987665 3789999999999999999999984
No 12
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1
Probab=98.20 E-value=8.9e-07 Score=80.74 Aligned_cols=157 Identities=22% Similarity=0.251 Sum_probs=94.2
Q ss_pred CccccccccceecCchHHHHHHHHhhCC---eEEEcCHHHHHHHHh---h--CCCccEEccCCceecCCCceeccccccc
Q psy14063 319 PENVPRLIDLIQVQDEKIRLAFYFATRE---TLVAQDLNQAKRIGY---S--GGGYRMVTLEGAIIEPSETLVAQDLNQA 390 (531)
Q Consensus 319 ~~~~~~~~d~i~~~~~~~~~~~~~llg~---~~v~~~l~~A~~~~~---~--~~~~~~vt~~G~~~~~~~~~~~~~~~~~ 390 (531)
++.+|++.+++++ +++|+.+++.+||+ .+||++.+.|..++. . .++..|++++... ... .....+ .
T Consensus 42 ~g~~g~l~~li~v-~~~~e~Ave~aLg~~l~~ivv~~~~~a~~~i~~lk~~~~gr~~~lpl~~~~--~~~--~~~~~~-~ 115 (213)
T 1gxl_A 42 PGLVDVVSNLIEV-DEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLID--GSF--NRISGL-E 115 (213)
T ss_dssp TTEEEEGGGTCBC-CHHHHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHTCEEEEEEETTTSC--CCC--CCCTTG-G
T ss_pred CCCceehhheeee-CHHHHHHHHHHHHHhhcEEEECCHHHHHHHHHHHHhcCCCceEEEEchhcC--CCC--ccchhh-h
Confidence 3456789999999 79999999999985 578988777655442 2 2335565444211 000 000000 0
Q ss_pred ccccccCCccccccccccc-----cccCchhHHhhHHHHHhccccCCceeEEccccccccccccccCCCccccccccccc
Q psy14063 391 KRIGYSGGGYRMVTLEGAI-----IEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRK 465 (531)
Q Consensus 391 ~~~g~~~~~~~~v~~~~~~-----~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~~~~g~~~gg~~~~~~~~~~~~ 465 (531)
..+|+++.+.++|++++.+ ++++++++|+|++.|..+.+ . ......+|+..|.+.+.++...++.....
T Consensus 116 ~~~g~~~~~~d~v~~~~~~~~~~~~~lg~~~vv~~l~~A~~~~~-----~-~~~~~~~VT~~G~~~~~~G~~~gg~~~~~ 189 (213)
T 1gxl_A 116 NERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKK-----K-YRLNTRIATLDGELISGRGAITGGREERS 189 (213)
T ss_dssp GSTTEEEEGGGGCBCCSTTHHHHHHHSSSEEEESSHHHHHHHHH-----H-TCSSCEEECTTSCEECTTSCEEECCCSSC
T ss_pred cCCCcHHHHHHHhcCCHHHHHHHHHHhCCEEEECCHHHHHHHHH-----h-cCCCceEEecCCeEEcCCceEECCCCccc
Confidence 1245555566788776554 78999999999999986321 1 13456789999997765444444432111
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 466 ATVSTDTSLVKDLEVKEKRLASLETELRILSQ 497 (531)
Q Consensus 466 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~ 497 (531)
..+...++++++++.++..++.
T Consensus 190 ----------~~~l~~~~el~~l~~~l~~~~~ 211 (213)
T 1gxl_A 190 ----------SNVFERRIKLKHLEQEMEETER 211 (213)
T ss_dssp ----------CCTTHHHHHHHHHHHHHC----
T ss_pred ----------cchhhHHHHHHHHHHHHHHHHh
Confidence 2244556677777666655544
No 13
>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=98.18 E-value=2.2e-06 Score=78.01 Aligned_cols=126 Identities=10% Similarity=0.107 Sum_probs=87.3
Q ss_pred ccccccccceecCchHHHHHHHHhhCC---eEEEcCHHHHHHHH---hh---CCCccEEccCCceecCCCceeccccccc
Q psy14063 320 ENVPRLIDLIQVQDEKIRLAFYFATRE---TLVAQDLNQAKRIG---YS---GGGYRMVTLEGAIIEPSETLVAQDLNQA 390 (531)
Q Consensus 320 ~~~~~~~d~i~~~~~~~~~~~~~llg~---~~v~~~l~~A~~~~---~~---~~~~~~vt~~G~~~~~~~~~~~~~~~~~ 390 (531)
|.+|++.+++++ +++|+.+++.+||+ .+||++.++|..++ +. .++..|++++.. .+.. + ..|
T Consensus 48 g~~g~l~dli~v-~~~~e~Ave~aLG~~l~~iVV~~~~~a~~~i~~l~~~~~~gr~tflpl~~~--~~~~-~---~~~-- 118 (213)
T 2wd5_B 48 GYHGIVMNNFEC-EPAFYTCVEVTAGNRLFYHIVDSDEVSTKILMEFNKMNLPGEVTFLPLNKL--DVRD-T---AYP-- 118 (213)
T ss_dssp TEEEEGGGSEEC-CGGGHHHHHHHHTTGGGCEEESCHHHHHHHHHHHHHTTCCCCEEEEETTTC--CCCC-C---CCC--
T ss_pred CceeeHHHhccc-CHHHHHHHHHHHhHHhhEEEECCHHHHHHHHHHHHhCCCCcceEEEECccc--Cccc-C---CCC--
Confidence 456788999999 79999999999996 57899887775544 22 234556644321 0000 0 001
Q ss_pred ccccccCCccccccccccc-----cccCchhHHhhHHHHHhccccCCceeEEccccccccccccccCCCcc
Q psy14063 391 KRIGYSGGGYRMVTLEGAI-----IEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSN 456 (531)
Q Consensus 391 ~~~g~~~~~~~~v~~~~~~-----~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~~~~g~~~gg~~~ 456 (531)
..+|+++ ..++|++++.+ ++++++++|+|++.|..+.+. .+.++||++|++++++|+|+||+..
T Consensus 119 ~~~~~~~-l~~~v~~~~~~~~~~~~~l~~~~vv~~l~~A~~l~~~-~~~~~VTldG~~~~~~G~~tgG~~~ 187 (213)
T 2wd5_B 119 ETNDAIP-MISKLRYNPRFDKAFKHVFGKTLICRSMEVSTQLARA-FTMDCITLEGDQVSHRGALTGGYYD 187 (213)
T ss_dssp CCSSEEE-GGGGCEECGGGHHHHHHHHTTEEEESSHHHHHHHHHH-SSCEEECTTCCEECTTSCEEECCCC
T ss_pred CCCCcee-HHHHccCcHHHHHHHHHHcCCEEEECCHHHHHHHHHh-cCceEEeCCCcEECCCeEEECCCCC
Confidence 1123332 34566665544 789999999999999886554 3689999999999999999988743
No 14
>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus}
Probab=97.94 E-value=4.6e-06 Score=73.62 Aligned_cols=127 Identities=23% Similarity=0.342 Sum_probs=96.8
Q ss_pred CCccccccccceecCchH-HHHHHHHhhCC---eEEEcCHHHHHHHHh---h--CCCccEEccCCceecCCCceeccccc
Q psy14063 318 TPENVPRLIDLIQVQDEK-IRLAFYFATRE---TLVAQDLNQAKRIGY---S--GGGYRMVTLEGAIIEPSETLVAQDLN 388 (531)
Q Consensus 318 ~~~~~~~~~d~i~~~~~~-~~~~~~~llg~---~~v~~~l~~A~~~~~---~--~~~~~~vt~~G~~~~~~~~~~~~~~~ 388 (531)
.+|.+|++.+++.+ +++ |..+++.+||+ .+||++.++|..++. . .++..|++++.. .+. ..
T Consensus 33 ~~gv~G~l~dLi~V-~~~kye~Ave~aLG~~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpl~~i--~~~------~~- 102 (189)
T 3nwc_A 33 IGGIYGTLAELIKV-KDEAYALAIEVALGNRADNVVVEDELVAEKAIKYLKEHKLGRLTFLPLNKI--KPK------HV- 102 (189)
T ss_dssp CCSEEEEHHHHCEE-SCGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHTTCCCCCEEETTTC--CCC------CC-
T ss_pred CCCceEEHHHheee-ChhhHHHHHHHHhccccccEEECCHHHHHHHHHHHHhcCCCceEEEECCcc--ccc------cC-
Confidence 36778899999999 566 99999999985 689999998876553 2 356778877632 110 11
Q ss_pred ccccccccCCccccccccccc-----cccCchhHHhhHHHHHhccccCCceeEEccccccccccccccCCCcccccc
Q psy14063 389 QAKRIGYSGGGYRMVTLEGAI-----IEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRG 460 (531)
Q Consensus 389 ~~~~~g~~~~~~~~v~~~~~~-----~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~~~~g~~~gg~~~~~~~ 460 (531)
+..+|++ ++++|++++.+ ++|++++||+|++.|.++ + +++++||++|++++++|+|+||+...++.
T Consensus 103 -~~~~g~~--a~dlv~~d~~~~~a~~~llg~tlvv~dl~~A~~l-~--~~~r~VTldGd~i~~~G~~tGG~~~~~~~ 173 (189)
T 3nwc_A 103 -DSSVGLP--AVDVIEYDQKIENAVKFALGDTVIVNSMEEARPH-I--GKVRMVTIEGELYERSGAITGGHFRARGL 173 (189)
T ss_dssp -CSCSSEE--GGGGEECCGGGHHHHHHHHTTEEEESCSGGGGGG-T--TTSEEEETTSCEECTTSCEECSCSSCCCS
T ss_pred -CCCCCcE--EeeeeccCHHHHHHHHHHhCCEEEECCHHHHHHH-h--CCCeEEeCCCcEEECCEEEEeCCCCCCCc
Confidence 1224554 67788877665 789999999999999887 3 37899999999999999999998654443
No 15
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.93 E-value=0.0049 Score=57.25 Aligned_cols=10 Identities=20% Similarity=0.248 Sum_probs=5.0
Q ss_pred ccCcchHHHH
Q psy14063 255 GIDQKYDIAV 264 (531)
Q Consensus 255 ~v~~~y~~Ai 264 (531)
.+||.....|
T Consensus 207 ~lppq~~~~i 216 (256)
T 3na7_A 207 RLNDKIYTEV 216 (256)
T ss_dssp BCCHHHHHHH
T ss_pred eeCHHHHHHH
Confidence 3466554444
No 16
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=97.66 E-value=1.4e-05 Score=73.56 Aligned_cols=130 Identities=22% Similarity=0.308 Sum_probs=88.6
Q ss_pred Cc-cccccccceecCchHHHHHHHHhhCC---eEEEcCHHHHHHHH---hh--CCCccEEccCCceecCCCceecccccc
Q psy14063 319 PE-NVPRLIDLIQVQDEKIRLAFYFATRE---TLVAQDLNQAKRIG---YS--GGGYRMVTLEGAIIEPSETLVAQDLNQ 389 (531)
Q Consensus 319 ~~-~~~~~~d~i~~~~~~~~~~~~~llg~---~~v~~~l~~A~~~~---~~--~~~~~~vt~~G~~~~~~~~~~~~~~~~ 389 (531)
+| .+|++.+++++.+++|..+++.+||+ .+||++.++|..++ +. .++..|++++... +.. .. ...+
T Consensus 52 ~g~v~G~l~dli~v~~~~ye~Ave~aLG~~l~~iVV~~~~~a~~~i~~Lk~~~~Gr~tflpl~~i~--~~~-~~-~~~~- 126 (233)
T 2wd5_A 52 PGSVYGRLIDLCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLE--VKP-TD-EKLR- 126 (233)
T ss_dssp GGGEEEEHHHHEEESSGGGHHHHHHHHGGGGSCEEESCHHHHHHHHHHHHHTTCCCEEEEETTTCC--CCC-CC-GGGG-
T ss_pred CCCeeeeHHHhceeCcHHHHHHHHHHHHHhhcEEEECCHHHHHHHHHHHHhcCCCCeEEEECcccc--cCC-cc-hhcc-
Confidence 45 56778899987458999999999985 57899877765543 22 2446666544311 000 00 0000
Q ss_pred cccccccCCccccccc-cccc-----cccCchhHHhhHHHHHhccccC-CceeEEccccccccccccccCCCc
Q psy14063 390 AKRIGYSGGGYRMVTL-EGAI-----IEPSETLVAQDLNQAKRIGYSG-GGYRMVTLEGAIIEPSGTMSGGGS 455 (531)
Q Consensus 390 ~~~~g~~~~~~~~v~~-~~~~-----~l~~~~~~~~~l~~a~~~~~~~-~~~~~vt~~g~~~~~~g~~~gg~~ 455 (531)
..+|+ .+++++|.+ ++.+ ++++++++|+|++.|..+.+.. ++.++||++|+++.++|+|+||+.
T Consensus 127 -~~~g~-~~l~dlV~~~~~~~~~~~~~~Lg~~~vv~dl~~A~~l~~~~~~~~r~VTldG~~~~~~G~~tGG~~ 197 (233)
T 2wd5_A 127 -ELKGA-KLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTVALDGTLFQKSGVISGGAS 197 (233)
T ss_dssp -GCSSC-EESGGGEEESSGGGHHHHHHHTTTCEEESSHHHHHHHHHSSSSCCCEEETTCCEECTTSCEEECHH
T ss_pred -CCCCc-hHHHHhhhCCcHHHHHHHHHHhCCEEEECCHHHHHHHHHhcCCCceEEecCCEEEeCCeeEeCCCc
Confidence 01232 245677777 4544 7899999999999999876543 368899999999999999998863
No 17
>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A
Probab=97.40 E-value=5.6e-05 Score=67.00 Aligned_cols=131 Identities=24% Similarity=0.310 Sum_probs=92.2
Q ss_pred CccccccccceecCchHHHHHHHHhhCC---eEEEcCHHHHHHHHh---h--CCCccEEccCCceecCCCceeccccccc
Q psy14063 319 PENVPRLIDLIQVQDEKIRLAFYFATRE---TLVAQDLNQAKRIGY---S--GGGYRMVTLEGAIIEPSETLVAQDLNQA 390 (531)
Q Consensus 319 ~~~~~~~~d~i~~~~~~~~~~~~~llg~---~~v~~~l~~A~~~~~---~--~~~~~~vt~~G~~~~~~~~~~~~~~~~~ 390 (531)
++.++.+.+++++ +++|+.+++.+||. .+||++.+.|..++. . .++..|++++...... . ....+ .
T Consensus 30 ~g~~g~l~~li~v-~~~~e~Ave~aLG~~l~~ivv~~~~~a~~~i~~lk~~~~gr~tflpl~~~~~~~-~---~~~~~-~ 103 (186)
T 1gxj_A 30 PGLVDVVSNLIEV-DEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSF-N---RISGL-E 103 (186)
T ss_dssp TTEEEEHHHHCBC-CGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHTCCCEEEEETTTCCCCC-C---CCTTG-G
T ss_pred CCcceehhheecc-CHHHHHHHHHHHHHhhhEEEECCHHHHHHHHHHHHhcCCCceEEEEccccCCCc-c---cchhc-c
Confidence 3556778999999 79999999999985 578998877765542 2 2556676544311000 0 00000 0
Q ss_pred ccccccCCccccccccccc-----cccCchhHHhhHHHHHhcccc-CCceeEEccccccccccccccCCCc
Q psy14063 391 KRIGYSGGGYRMVTLEGAI-----IEPSETLVAQDLNQAKRIGYS-GGGYRMVTLEGAIIEPSGTMSGGGS 455 (531)
Q Consensus 391 ~~~g~~~~~~~~v~~~~~~-----~l~~~~~~~~~l~~a~~~~~~-~~~~~~vt~~g~~~~~~g~~~gg~~ 455 (531)
...|+++.+.++|++++.+ ++|+++++|+|++.|.++.+. .++.++||++|++++++|+|+||+.
T Consensus 104 ~~~g~~~~~~dlv~~~~~~~~~~~~~lg~~~v~~~l~~A~~l~~~~~~~~~~VTldG~~~~~~G~~~gG~~ 174 (186)
T 1gxj_A 104 NERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGRE 174 (186)
T ss_dssp GSTTEEEEHHHHCBCCGGGHHHHHHHHTTCEEESCHHHHHHHHHHHTCCSCEEETTSCEECTTSCEEEEEC
T ss_pred cCCCchHHHHHHccCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCceEEeCCCeEEcCCEEEECCCC
Confidence 1245555566778876654 789999999999999876554 4678999999999999999998874
No 18
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.31 E-value=0.068 Score=46.00 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q psy14063 68 HETKVQQMEQELTANLESIKKCTD 91 (531)
Q Consensus 68 ~~~~~~~~~~~l~~~~~~~~~~~~ 91 (531)
+...+..++..+.++...-..++.
T Consensus 22 ~~q~~~~le~El~EFqesSrELE~ 45 (189)
T 2v71_A 22 YKQSFQEARDELVEFQEGSRELEA 45 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333333
No 19
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.98 E-value=0.2 Score=61.70 Aligned_cols=21 Identities=24% Similarity=0.172 Sum_probs=9.9
Q ss_pred chHHHHHHHHhh--CCeEEEcCH
Q psy14063 333 DEKIRLAFYFAT--RETLVAQDL 353 (531)
Q Consensus 333 ~~~~~~~~~~ll--g~~~v~~~l 353 (531)
++.|...++..+ |..++++|.
T Consensus 2216 d~~f~~~LE~ai~fG~pvLienv 2238 (3245)
T 3vkg_A 2216 DSSFMKNLESALRFGCPLLVQDV 2238 (3245)
T ss_dssp ----HHHHHHHHHHTCCEECCCC
T ss_pred chhHHHHHHHHHHcCCeEEEccc
Confidence 445555555543 666666665
No 20
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.93 E-value=0.27 Score=60.58 Aligned_cols=16 Identities=6% Similarity=0.100 Sum_probs=8.7
Q ss_pred cEEecchHHHHHHHHHHHH
Q psy14063 273 YIVTETVEAGEAVIAAVKR 291 (531)
Q Consensus 273 ~ivv~~~~~a~~~i~~Lk~ 291 (531)
-+++|-...| ..|+|+
T Consensus 2187 PLlIDPq~Qa---~~WIk~ 2202 (3245)
T 3vkg_A 2187 PLVIDPSGQA---MEFLMN 2202 (3245)
T ss_dssp EEEECTTSHH---HHHHHH
T ss_pred eEEEChHHHH---HHHHHH
Confidence 4556655544 455554
No 21
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.75 E-value=0.2 Score=41.98 Aligned_cols=11 Identities=9% Similarity=0.329 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q psy14063 69 ETKVQQMEQEL 79 (531)
Q Consensus 69 ~~~~~~~~~~l 79 (531)
+..+.+++.++
T Consensus 12 ekQL~E~n~kL 22 (168)
T 3o0z_A 12 QKQLEEANDLL 22 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 22
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.55 E-value=0.32 Score=41.83 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=17.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy14063 64 NLGEHETKVQQMEQELTANLESIKKCTDEMESAKSEL 100 (531)
Q Consensus 64 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 100 (531)
.+.-++.....+..++..++..+.++...-..+..++
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~EL 47 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAEL 47 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555544444443333
No 23
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=96.51 E-value=0.19 Score=38.79 Aligned_cols=69 Identities=10% Similarity=0.063 Sum_probs=27.6
Q ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy14063 127 RFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLAD 195 (531)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~ 195 (531)
+.++..++.+.+....+...++..+..........+.++..+...+..+...++.+...+......+..
T Consensus 8 KkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 8 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444444443333333333333333333333333
No 24
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.49 E-value=0.3 Score=40.66 Aligned_cols=29 Identities=7% Similarity=0.134 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy14063 68 HETKVQQMEQELTANLESIKKCTDEMESA 96 (531)
Q Consensus 68 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 96 (531)
+..+++..+.+....+.++..+..++...
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v 54 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTV 54 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444333
No 25
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.19 E-value=0.27 Score=39.92 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14063 195 DLTREEAKLLDQVEKLARE 213 (531)
Q Consensus 195 ~l~~~~~~~~~~l~~l~~~ 213 (531)
.+......+...+..+..+
T Consensus 101 ~L~~~kkkle~e~~~Lk~~ 119 (129)
T 2fxo_A 101 ELTAKKRKLEDECSELKRD 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 26
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.07 E-value=0.2 Score=56.12 Aligned_cols=9 Identities=11% Similarity=0.113 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy14063 199 EEAKLLDQV 207 (531)
Q Consensus 199 ~~~~~~~~l 207 (531)
+...+++++
T Consensus 1031 e~~~L~qq~ 1039 (1080)
T 2dfs_A 1031 QNTLLKTEK 1039 (1080)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 27
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=95.94 E-value=0.41 Score=36.99 Aligned_cols=49 Identities=6% Similarity=0.036 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14063 129 ECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTT 177 (531)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~ 177 (531)
++..++.+.+....+...++..+...+......+..+..+...+..+..
T Consensus 10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~ 58 (101)
T 3u59_A 10 KMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTED 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333
No 28
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=95.85 E-value=0.45 Score=36.74 Aligned_cols=25 Identities=8% Similarity=0.232 Sum_probs=8.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH
Q psy14063 137 LEIFLSTQSKETKKLADLEANLEKV 161 (531)
Q Consensus 137 ~~~~~~~~~~~~~~i~~~~~~i~~~ 161 (531)
+..++........+...+...+...
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~ 35 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQA 35 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 29
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.40 E-value=0.97 Score=37.57 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=14.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy14063 62 MKNLGEHETKVQQMEQELTANLESIKKCTDEMES 95 (531)
Q Consensus 62 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 95 (531)
+..+.......+....++..++..+......+..
T Consensus 27 E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKs 60 (155)
T 2efr_A 27 KKLLERAEERAELSEGKSAELEEELKTVTNNLKS 60 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3334444444444444444444444444444333
No 30
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=95.09 E-value=0.9 Score=41.57 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=27.0
Q ss_pred CCCccccccccc-ccCcchHHHHHHHhc-cCCcEEecchHHHHH
Q psy14063 243 VSGILGRLGDLG-GIDQKYDIAVSTACG-ALNYIVTETVEAGEA 284 (531)
Q Consensus 243 ~~gv~g~l~~li-~v~~~y~~Aie~~lg-~l~~ivv~~~~~a~~ 284 (531)
|.|+. |+++. +|+-.-+..+++.+| ...+|||.|..++..
T Consensus 120 ~GGvl--LseiYDDI~ieDApyfsAlyGpar~AIVV~Dl~~~~~ 161 (302)
T 3ibp_A 120 FGGVL--LSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQVTE 161 (302)
T ss_dssp SSSEE--HHHHSTTCCTTTHHHHHHHTGGGGSEEECSSCHHHHH
T ss_pred hCCEe--hhhhhcCCChhhHHHHHHHhcccceeeEeCCHHHHHH
Confidence 45543 34433 244445566788899 889999999988764
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.07 E-value=0.47 Score=49.79 Aligned_cols=15 Identities=7% Similarity=0.047 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy14063 204 LDQVEKLAREVSEKR 218 (531)
Q Consensus 204 ~~~l~~l~~~l~~~~ 218 (531)
.++...+..++.++.
T Consensus 564 ~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 564 RQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 32
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.47 E-value=1.6 Score=35.33 Aligned_cols=19 Identities=5% Similarity=0.237 Sum_probs=7.3
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q psy14063 65 LGEHETKVQQMEQELTANL 83 (531)
Q Consensus 65 ~~~~~~~~~~~~~~l~~~~ 83 (531)
+.....++..+...+....
T Consensus 15 ~~~~~eel~~lke~l~k~e 33 (129)
T 2fxo_A 15 MASMKEEFTRLKEALEKSE 33 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.46 E-value=0.34 Score=50.85 Aligned_cols=41 Identities=27% Similarity=0.406 Sum_probs=16.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 173 EELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLARE 213 (531)
Q Consensus 173 ~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~ 213 (531)
+.++.+...++..++..+..+.+++++......++.++...
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444444444433
No 34
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.00 E-value=3 Score=31.32 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy14063 144 QSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESE 185 (531)
Q Consensus 144 ~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~ 185 (531)
......++..+...+..-...-...+.....+..+++++...
T Consensus 21 ~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTas 62 (97)
T 2eqb_B 21 LSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 62 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444333333333333334444444444444433
No 35
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=91.08 E-value=4 Score=30.94 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 149 KKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQ 222 (531)
Q Consensus 149 ~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~ 222 (531)
..+..++..-..+...+..++.+...+...+..++.+...+...-...+...+....++-.+..+..++..++.
T Consensus 11 ~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~ 84 (96)
T 3q8t_A 11 RELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMR 84 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444455555555555555555555555555555555555555555555555555555544
No 36
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=91.05 E-value=4.2 Score=31.14 Aligned_cols=43 Identities=16% Similarity=0.317 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 179 VPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESM 221 (531)
Q Consensus 179 ~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~ 221 (531)
+.-++.+..-....+..-+.....+..+..++..++..++.+.
T Consensus 64 I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 64 VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344444444444444444445555555555555555444443
No 37
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=90.39 E-value=6.7 Score=32.34 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 149 KKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQ 206 (531)
Q Consensus 149 ~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~ 206 (531)
.++..+...+...............+...++..++..+.....+.......+..+...
T Consensus 52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEee 109 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEE 109 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333333333
No 38
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=89.89 E-value=5.2 Score=30.31 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=15.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 137 LEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEEL 175 (531)
Q Consensus 137 ~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l 175 (531)
+..+......+..++..+...-..+...|..++.+...+
T Consensus 13 L~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 13 LKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444333333343333333333
No 39
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=89.83 E-value=2.4 Score=41.97 Aligned_cols=90 Identities=8% Similarity=0.049 Sum_probs=51.2
Q ss_pred hHHhhhhHHHHHHHhhccHHHHHHHHHH-----HHHHHHHHHH-HHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHH
Q psy14063 13 TEKLTRVQLVETDLKALEPELRKAVNFL-----ELENCVQRKH-NEIYQYERY-VNMKNLGEHETKVQQMEQELTANLES 85 (531)
Q Consensus 13 ~~~~~~~~~~e~~~~~Le~~~~~a~~~~-----~~~~~l~~l~-~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (531)
....++|+.+..++..+.+-...+..|. .++.++.... +.-...+|. ++++.+..++.++...-.+|+.|+..
T Consensus 60 rDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsn 139 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKN 139 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666655555554332 2222222222 122344555 66677777777777766777777777
Q ss_pred HHHhHHHHHHHHHHHHH
Q psy14063 86 IKKCTDEMESAKSELKT 102 (531)
Q Consensus 86 ~~~~~~~~~~~~~~~~~ 102 (531)
|..+..+|+.++..+..
T Consensus 140 Ledq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 140 VRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777666543
No 40
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=89.04 E-value=8.6 Score=31.68 Aligned_cols=76 Identities=12% Similarity=0.168 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 147 ETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQ 222 (531)
Q Consensus 147 ~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~ 222 (531)
++++-......+..++..+........+...++.....++..+...+.............+..+...+...-+.+.
T Consensus 43 lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlK 118 (147)
T 2b9c_A 43 IESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLK 118 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555444444444445555555555555555555544444444455544444444444433
No 41
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=88.76 E-value=6.2 Score=29.68 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=30.1
Q ss_pred hhhhhHHHHHhHHhhhhHHHHHHHhhccHHHHHHH
Q psy14063 3 VLYGKYDEERTEKLTRVQLVETDLKALEPELRKAV 37 (531)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~ 37 (531)
+.+..||+.+...+++++.++.+...|+.++....
T Consensus 9 e~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 9 VELQELNDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999998876553
No 42
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.20 E-value=9.9 Score=31.38 Aligned_cols=33 Identities=9% Similarity=-0.014 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 186 IAESRARLADLTREEAKLLDQVEKLAREVSEKR 218 (531)
Q Consensus 186 l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~ 218 (531)
...++.+...++..+......+..++.++..++
T Consensus 110 ~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 110 KYAIEILNKRLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444333
No 43
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.17 E-value=22 Score=35.83 Aligned_cols=36 Identities=14% Similarity=0.069 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy14063 65 LGEHETKVQQMEQELTANLESIKKCTDEMESAKSEL 100 (531)
Q Consensus 65 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 100 (531)
+...+.+...++.+..+++..+.............+
T Consensus 355 ~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~ 390 (487)
T 3oja_A 355 VTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTL 390 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 333333333444444444444444444444443333
No 44
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=87.02 E-value=8.7 Score=29.42 Aligned_cols=31 Identities=16% Similarity=0.042 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 190 RARLADLTREEAKLLDQVEKLAREVSEKRES 220 (531)
Q Consensus 190 ~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~ 220 (531)
+.+..-.+.....-+...+.+..+...+..+
T Consensus 68 kaQv~IY~~DF~aERadREkl~~eKe~L~~q 98 (110)
T 2v4h_A 68 KAQADIYKADFQAERHAREKLVEKKEYLQEQ 98 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchhhHHHHHhHHHHHHHH
Confidence 3333333333333333333333333333333
No 45
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.71 E-value=14 Score=30.51 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14063 201 AKLLDQVEKLAREVSEKRES 220 (531)
Q Consensus 201 ~~~~~~l~~l~~~l~~~~~~ 220 (531)
..++.+...+..++.+....
T Consensus 111 ~~~e~r~~~L~~ql~e~~~~ 130 (154)
T 2ocy_A 111 YAIEILNKRLTEQLREKDTL 130 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 46
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=84.86 E-value=10 Score=28.20 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 189 SRARLADLTREEAKLLDQVEKLAREVSEKRE 219 (531)
Q Consensus 189 l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~ 219 (531)
....+..-+.....+..+.+.+..++..++.
T Consensus 52 Y~~DF~aERadREkl~~eKe~L~~ql~~lq~ 82 (94)
T 3jsv_C 52 YKADFQAERHAREKLVEKKEYLQEQLEQLQR 82 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333333333333334444444444443333
No 47
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=82.26 E-value=16 Score=28.40 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14063 195 DLTREEAKLLDQVEKLAREVS 215 (531)
Q Consensus 195 ~l~~~~~~~~~~l~~l~~~l~ 215 (531)
.+...+..+...+..+...+.
T Consensus 75 ~l~~~i~~l~~~i~~l~~~~~ 95 (112)
T 1l8d_A 75 NSKNTLAKLIDRKSELERELR 95 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 48
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=81.61 E-value=14 Score=27.44 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14063 152 ADLEANLEKVQTTLTE 167 (531)
Q Consensus 152 ~~~~~~i~~~e~~l~~ 167 (531)
.-++..+.-+..+...
T Consensus 43 ~vLk~Qv~IY~~DF~a 58 (94)
T 3jsv_C 43 PVLKAQADIYKADFQA 58 (94)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 49
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=81.02 E-value=8.5 Score=27.11 Aligned_cols=49 Identities=20% Similarity=0.134 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhh
Q psy14063 477 DLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTCLI 525 (531)
Q Consensus 477 ~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 525 (531)
.+-+|+..+.....++..-+..+.+++.++.+....+..++.++..++.
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3566666666666667777777777777777777777777777776643
No 50
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=80.47 E-value=36 Score=33.80 Aligned_cols=10 Identities=20% Similarity=0.511 Sum_probs=0.0
Q ss_pred ccccccccCcch
Q psy14063 249 RLGDLGGIDQKY 260 (531)
Q Consensus 249 ~l~~li~v~~~y 260 (531)
||-++ ||..|
T Consensus 209 P~kD~--Vp~~f 218 (562)
T 3ghg_A 209 PVPDL--VPGNF 218 (562)
T ss_dssp ------------
T ss_pred ccccc--Cchhh
Confidence 44455 44444
No 51
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=79.94 E-value=17 Score=27.45 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14063 148 TKKLADLEANLEKVQT 163 (531)
Q Consensus 148 ~~~i~~~~~~i~~~e~ 163 (531)
.-+++-++..++..++
T Consensus 29 ~YqVdlLKD~LEe~eE 44 (103)
T 4h22_A 29 MYQVDTLKDMLLELEE 44 (103)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 52
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=79.22 E-value=53 Score=32.58 Aligned_cols=6 Identities=17% Similarity=0.246 Sum_probs=3.0
Q ss_pred cccccc
Q psy14063 438 TLEGAI 443 (531)
Q Consensus 438 t~~g~~ 443 (531)
+|.|..
T Consensus 415 NLNG~Y 420 (464)
T 1m1j_B 415 NPNGRY 420 (464)
T ss_dssp ETTSBC
T ss_pred CCCccc
Confidence 455544
No 53
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=78.44 E-value=21 Score=27.60 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 187 AESRARLADLTREEAKLLDQVEKLAREV 214 (531)
Q Consensus 187 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l 214 (531)
..+...+..+...+..+...+..+..++
T Consensus 74 ~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 74 NNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 54
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=78.02 E-value=18 Score=26.61 Aligned_cols=27 Identities=7% Similarity=0.078 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy14063 133 AKSELEIFLSTQSKETKKLADLEANLE 159 (531)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~i~~~~~~i~ 159 (531)
+..+..++..-.-....++....+.|.
T Consensus 18 ~~~~~~ri~~aig~~d~ri~~NtqaI~ 44 (114)
T 2xzr_A 18 IENEIARIKKLIGAIDGRVTRNTQSIE 44 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHhhhhHHHHhhHHHHH
Confidence 333333333333333333333333333
No 55
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=77.90 E-value=23 Score=27.62 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 189 SRARLADLTREEAKLLDQVEKLAREVSEKRESM 221 (531)
Q Consensus 189 l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~ 221 (531)
+..+...+...+..+...+..+..++.+++..+
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444433
No 56
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=77.66 E-value=19 Score=26.55 Aligned_cols=16 Identities=6% Similarity=0.277 Sum_probs=5.7
Q ss_pred hhHHHHHHHHHHHHHH
Q psy14063 178 RVPAMESEIAESRARL 193 (531)
Q Consensus 178 ~~~~~~~~l~~l~~~~ 193 (531)
++.+-.+++.++..+.
T Consensus 70 QI~ENhkEMKq~aaqs 85 (114)
T 2xzr_A 70 QINENHKEMKQIEDKI 85 (114)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 57
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=77.28 E-value=24 Score=27.51 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 185 EIAESRARLADLTREEAKLLDQVEKLAREVS 215 (531)
Q Consensus 185 ~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~ 215 (531)
....+...+..+...+..+...+.+++..+.
T Consensus 78 ~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 78 KIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444443
No 58
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=75.17 E-value=36 Score=28.58 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 183 ESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQ 222 (531)
Q Consensus 183 ~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~ 222 (531)
...+..+......+...+.........+..++..++-.+.
T Consensus 102 ksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~ 141 (170)
T 3l4q_C 102 KSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLM 141 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 3333333333333333333333333344444444444333
No 59
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=73.73 E-value=18 Score=24.40 Aligned_cols=55 Identities=9% Similarity=0.048 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhccCC
Q psy14063 476 KDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTCLIDVKSP 530 (531)
Q Consensus 476 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 530 (531)
..+..++..+.+....+......+..+...+..+...++.....+..+..++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~y 59 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEYY 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666667777667777777777777777777777777777777776665543
No 60
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=70.34 E-value=43 Score=27.37 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy14063 155 EANLEKVQTTLTERK 169 (531)
Q Consensus 155 ~~~i~~~e~~l~~~~ 169 (531)
+.++..++..+..++
T Consensus 74 ~~El~~l~~ki~dLe 88 (152)
T 3a7p_A 74 QKELKSKEQEIRRLK 88 (152)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 61
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=68.14 E-value=98 Score=30.65 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy14063 153 DLEANLEKVQTTLTE 167 (531)
Q Consensus 153 ~~~~~i~~~e~~l~~ 167 (531)
.++..+...+..+..
T Consensus 125 ~Iq~slk~~Q~Qi~e 139 (464)
T 1m1j_B 125 MIDNKLVKTQKQRKD 139 (464)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccc
Confidence 333333333333333
No 62
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=68.03 E-value=37 Score=25.69 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=41.0
Q ss_pred HhhccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy14063 26 LKALEPELRKA-VNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSEL 100 (531)
Q Consensus 26 ~~~Le~~~~~a-~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 100 (531)
+..++..+.+| ..+.++-++...+ .++|.-++..+...+..+..+..+..+....++.....+..+...+
T Consensus 4 L~EvEEKyrKAMVsnAQLDNEKsal-----~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~ 74 (103)
T 4h22_A 4 LAEVEEKYKKAMVSNAQLDNEKTNF-----MYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQF 74 (103)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778877 7888888888877 5566666666666666666555555555544444444444444333
No 63
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=67.89 E-value=85 Score=29.85 Aligned_cols=13 Identities=0% Similarity=0.340 Sum_probs=8.2
Q ss_pred ccccccccccCcchH
Q psy14063 247 LGRLGDLGGIDQKYD 261 (531)
Q Consensus 247 ~g~l~~li~v~~~y~ 261 (531)
.+++-++ |+..|-
T Consensus 210 ~~p~kd~--vP~~fK 222 (390)
T 1deq_A 210 MSTITGP--VPREFK 222 (390)
T ss_pred ccccccc--CChhhc
Confidence 3556666 777774
No 64
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=66.76 E-value=36 Score=25.11 Aligned_cols=21 Identities=10% Similarity=0.007 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14063 196 LTREEAKLLDQVEKLAREVSE 216 (531)
Q Consensus 196 l~~~~~~~~~~l~~l~~~l~~ 216 (531)
+..++..+...+..+..++..
T Consensus 61 l~~~l~~~e~eLe~~~erWee 81 (89)
T 2lw1_A 61 VLADMAAAEQELEQAFERWEY 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444433
No 65
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=65.68 E-value=42 Score=25.51 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 192 RLADLTREEAKLLDQVEKLAREVSEKRE 219 (531)
Q Consensus 192 ~~~~l~~~~~~~~~~l~~l~~~l~~~~~ 219 (531)
....+...+..+...+..+...+.+++.
T Consensus 73 ~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 73 KLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444433
No 66
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=64.21 E-value=24 Score=25.45 Aligned_cols=22 Identities=9% Similarity=0.063 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14063 200 EAKLLDQVEKLAREVSEKRESM 221 (531)
Q Consensus 200 ~~~~~~~l~~l~~~l~~~~~~~ 221 (531)
+.+++..+...+..+..++.++
T Consensus 30 IeeLn~~v~~Qq~~Id~L~~ql 51 (78)
T 3efg_A 30 LTELSEALADARLTGARNAELI 51 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 67
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=62.05 E-value=1.2e+02 Score=29.55 Aligned_cols=146 Identities=13% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 136 ELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVS 215 (531)
Q Consensus 136 ~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~ 215 (531)
+++..++....--.+-..+++++.....++...+..+..++..+.....+.......+..+..+...++..+......+.
T Consensus 336 ~ve~~Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiA 415 (602)
T 1cii_A 336 DVEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIA 415 (602)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhcCCCCcccccccccccCcchHHHHHHHhccCCcEEecchHHHHHHHHHHHHc
Q psy14063 216 EKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQ 292 (531)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~gv~g~l~~li~v~~~y~~Aie~~lg~l~~ivv~~~~~a~~~i~~Lk~~ 292 (531)
+.+........-.+.++.+-. ++..+++. +-.+|.....-..+.++.=-..+.++|-..++.++.+
T Consensus 416 E~KrK~dE~~aIKDAVkfTAd---------FykkIsEk--yGeKykkIAkELAe~fKGKKIRSvDDALaSfEKyk~N 481 (602)
T 1cii_A 416 EEKRKQDELKATKDAINFTTE---------FLKSVSEK--YGAKAEQLAREMAGQAKGKKIRNVEEALKTYEKYRAD 481 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH--HCTHHHHHHHHHHHTTTTCBCCCHHHHHHHHHHTHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHH---------HHHHHHHH--HHHHHHHHHHHHHHhcCCCccCCHHHHHHHHHHHhcC
No 68
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=60.89 E-value=52 Score=24.96 Aligned_cols=26 Identities=12% Similarity=0.358 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 188 ESRARLADLTREEAKLLDQVEKLARE 213 (531)
Q Consensus 188 ~l~~~~~~l~~~~~~~~~~l~~l~~~ 213 (531)
.+...+..+...+..++..+.+++..
T Consensus 76 ~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 76 TLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444333
No 69
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=60.10 E-value=27 Score=21.44 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14063 478 LEVKEKRLASLETELRILSQQKMEVETQLNCTGNE 512 (531)
Q Consensus 478 l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 512 (531)
+.+|+....+++....++++.+..++.+-..|++-
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34455555555555555555555555555555443
No 70
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=59.15 E-value=17 Score=37.48 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14063 201 AKLLDQVEKLAREVSEKRESM 221 (531)
Q Consensus 201 ~~~~~~l~~l~~~l~~~~~~~ 221 (531)
..++.++...+......+..+
T Consensus 436 ~~~~~~~~~a~~~~~~~~~~l 456 (575)
T 2i1j_A 436 RRLQEEVEDARRKQDEAAAAL 456 (575)
T ss_dssp ------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333434444333333333
No 71
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=58.21 E-value=88 Score=26.73 Aligned_cols=58 Identities=17% Similarity=0.242 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 162 QTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRE 219 (531)
Q Consensus 162 e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~ 219 (531)
+..|...+.++.+.+..+...+..+..+..++...+..+..+..++..+...+.....
T Consensus 83 e~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et 140 (242)
T 3c9i_A 83 EARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAEN 140 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhccccccccc
Confidence 3333333334444444444444444444444444444444444444444444433333
No 72
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=58.21 E-value=55 Score=24.39 Aligned_cols=28 Identities=11% Similarity=-0.001 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy14063 131 DIAKSELEIFLSTQSKETKKLADLEANL 158 (531)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~i~~~~~~i 158 (531)
..+..++..+..+...++.+-..+...+
T Consensus 12 q~LNdRlAsyIdKVR~LEqqN~~Le~~i 39 (93)
T 3s4r_A 12 QELNDRFANLIDKVRFLEQQNKILLAEL 39 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333333333
No 73
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=57.82 E-value=39 Score=24.55 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhh
Q psy14063 497 QQKMEVETQLNCTGNELKYKKQEYDTC 523 (531)
Q Consensus 497 ~~~~~~~~~~~~l~~~~~~~~~~~~~~ 523 (531)
.++.....++..++..+..++..+..+
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444443
No 74
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=56.13 E-value=33 Score=24.06 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q psy14063 483 KRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEY 520 (531)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 520 (531)
..|.+|+.++..++.....+..+...|...+..+..++
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554444444444444554444444444
No 75
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=56.12 E-value=42 Score=22.95 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q psy14063 484 RLASLETELRILSQQKMEVETQLNCTGNELKYKKQ 518 (531)
Q Consensus 484 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 518 (531)
.+.+++.++..+...-..|..++..+..++..++.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555544
No 76
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=54.92 E-value=1.6e+02 Score=28.67 Aligned_cols=8 Identities=25% Similarity=0.285 Sum_probs=3.8
Q ss_pred Eccccccc
Q psy14063 437 VTLEGAII 444 (531)
Q Consensus 437 vt~~g~~~ 444 (531)
.+|.|...
T Consensus 342 sNLNG~Y~ 349 (409)
T 1m1j_C 342 GHLNGPYY 349 (409)
T ss_dssp EETTSCCC
T ss_pred CCCCcccc
Confidence 34555543
No 77
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=54.63 E-value=57 Score=23.42 Aligned_cols=49 Identities=16% Similarity=0.082 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhh
Q psy14063 476 KDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTCL 524 (531)
Q Consensus 476 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 524 (531)
..|..|+-.+.-.+..+.++...+......+..++..+..+..++..+.
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677788888888888888877777777777777777777777665544
No 78
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=54.39 E-value=33 Score=22.57 Aligned_cols=31 Identities=13% Similarity=0.357 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 476 KDLEVKEKRLASLETELRILSQQKMEVETQL 506 (531)
Q Consensus 476 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 506 (531)
.+++.|..+..+|..++..+..+..++..++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777777666666654
No 79
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=52.74 E-value=1.1e+02 Score=26.03 Aligned_cols=9 Identities=11% Similarity=0.279 Sum_probs=5.7
Q ss_pred ccccceecC
Q psy14063 324 RLIDLIQVQ 332 (531)
Q Consensus 324 ~~~d~i~~~ 332 (531)
++.+-|.||
T Consensus 156 YL~d~ltFP 164 (190)
T 4emc_A 156 YLFETLSFP 164 (190)
T ss_dssp GGGSCEEEE
T ss_pred Hhhceeeec
Confidence 566666664
No 80
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=51.66 E-value=1.5e+02 Score=27.26 Aligned_cols=32 Identities=22% Similarity=0.180 Sum_probs=21.0
Q ss_pred cceecCchHHHHHHHHhhC---CeEEEcCHHHHHHHHh
Q psy14063 327 DLIQVQDEKIRLAFYFATR---ETLVAQDLNQAKRIGY 361 (531)
Q Consensus 327 d~i~~~~~~~~~~~~~llg---~~~v~~~l~~A~~~~~ 361 (531)
|=|.+.|. +.+..++| +.+||+|+..+...+.
T Consensus 130 DDI~ieDA---pyfsAlyGpar~AIVV~Dl~~~~~~L~ 164 (302)
T 3ibp_A 130 DDVSLEDA---PYFSALYGPSRHAIVVPDLSQVTEHLE 164 (302)
T ss_dssp TTCCTTTH---HHHHHHTGGGGSEEECSSCHHHHHHHT
T ss_pred cCCChhhH---HHHHHHhcccceeeEeCCHHHHHHHHh
Confidence 44444343 44555565 6899999999977664
No 81
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=51.43 E-value=1.9e+02 Score=28.48 Aligned_cols=31 Identities=19% Similarity=0.102 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy14063 131 DIAKSELEIFLSTQSKETKKLADLEANLEKV 161 (531)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~ 161 (531)
..++..++.+...-.++..-+..++......
T Consensus 98 ~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~ 128 (461)
T 3ghg_B 98 DELNNNVEAVSQTSSSSFQYMYLLKDLWQKR 128 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhccc
Confidence 3333333333333333333333333333333
No 82
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=50.87 E-value=1.8e+02 Score=27.99 Aligned_cols=38 Identities=8% Similarity=0.016 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy14063 128 FECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTL 165 (531)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l 165 (531)
.+.+.+..+......++.....-++...+.+..++..+
T Consensus 140 ~~~~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~q~ 177 (373)
T 3hhm_B 140 REYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQC 177 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444444444444
No 83
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=48.97 E-value=59 Score=21.94 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q psy14063 484 RLASLETELRILSQQKMEVETQLNCTGNELKYKKQ 518 (531)
Q Consensus 484 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 518 (531)
.+.+|+.++..+...-..+..++..|..++..++.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555544443
No 84
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=46.60 E-value=2.3e+02 Score=28.01 Aligned_cols=8 Identities=13% Similarity=0.434 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q psy14063 207 VEKLAREV 214 (531)
Q Consensus 207 l~~l~~~l 214 (531)
+..+.+++
T Consensus 452 ~~~~~~~~ 459 (471)
T 3mq9_A 452 ITTLNHKL 459 (471)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 85
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=46.16 E-value=50 Score=20.30 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q psy14063 485 LASLETELRILSQQKMEVETQLNCTGNELKYKKQ 518 (531)
Q Consensus 485 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 518 (531)
+.+|+....+++....+++.++..++.+-.-+++
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4566666666666666666666666665544443
No 86
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=46.15 E-value=31 Score=24.25 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy14063 477 DLEVKEKRLASLETELRILSQQKMEVETQLNCTGNEL 513 (531)
Q Consensus 477 ~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 513 (531)
-+.+|+.++..++.....+......|...+..+..++
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444443
No 87
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=45.82 E-value=1.4e+02 Score=25.48 Aligned_cols=69 Identities=19% Similarity=0.302 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 146 KETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESM 221 (531)
Q Consensus 146 ~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~ 221 (531)
+.+.+|..++-.+...+..|...+..+..++..+...+..+. .++..+..+..++......+..++...
T Consensus 81 dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~-------~l~~~v~~ld~~vt~~et~Isal~~Dy 149 (242)
T 3c9i_A 81 DHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIA-------SLQTNVSALDGRVTTAENNISALQADY 149 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHB
T ss_pred cchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccch-------hhhhhhhhhcccccccccchhhhhhhh
Confidence 334455555555555555555444444444444444444444 444444455555555555555555443
No 88
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=45.15 E-value=1.1e+02 Score=24.17 Aligned_cols=23 Identities=9% Similarity=0.122 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 193 LADLTREEAKLLDQVEKLAREVS 215 (531)
Q Consensus 193 ~~~l~~~~~~~~~~l~~l~~~l~ 215 (531)
+..+...+..+...+..++.++.
T Consensus 97 ~~~l~~~~~~l~~~l~~l~~~i~ 119 (133)
T 1fxk_C 97 KNELESTLQKMGENLRAITDIMM 119 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 89
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=44.79 E-value=80 Score=22.32 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q psy14063 189 SRARLADLTREEAK 202 (531)
Q Consensus 189 l~~~~~~l~~~~~~ 202 (531)
++.++..+......
T Consensus 49 l~~El~s~~~~~~r 62 (77)
T 2w83_C 49 LQGELEAVKQAKLK 62 (77)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 90
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=44.52 E-value=54 Score=20.21 Aligned_cols=21 Identities=10% Similarity=0.332 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14063 150 KLADLEANLEKVQTTLTERKT 170 (531)
Q Consensus 150 ~i~~~~~~i~~~e~~l~~~~~ 170 (531)
.|+....+|...++.|..++.
T Consensus 10 kI~kVdrEI~Kte~kI~~lqk 30 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKK 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333
No 91
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=44.11 E-value=1.4e+02 Score=25.33 Aligned_cols=7 Identities=29% Similarity=0.268 Sum_probs=3.2
Q ss_pred CceeEEe
Q psy14063 295 GRVNVIP 301 (531)
Q Consensus 295 gr~tflp 301 (531)
+-++.+|
T Consensus 130 ~e~~Y~P 136 (190)
T 4emc_A 130 TEVIYAP 136 (190)
T ss_dssp CEEEEEE
T ss_pred ceEEEec
Confidence 3344445
No 92
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=43.66 E-value=74 Score=31.03 Aligned_cols=7 Identities=14% Similarity=0.240 Sum_probs=2.7
Q ss_pred HHHHHHh
Q psy14063 217 KRESMQT 223 (531)
Q Consensus 217 ~~~~~~~ 223 (531)
+-+++..
T Consensus 50 l~n~~~e 56 (403)
T 4etp_A 50 LHNELQE 56 (403)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 93
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=43.37 E-value=47 Score=22.54 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q psy14063 484 RLASLETELRILSQQKMEVETQLNCTGNELKYKKQ 518 (531)
Q Consensus 484 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 518 (531)
.+.+|+.++..+..+-..+..++..|..++..++.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555444433
No 94
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=42.94 E-value=73 Score=23.55 Aligned_cols=40 Identities=20% Similarity=0.136 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhh
Q psy14063 484 RLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTC 523 (531)
Q Consensus 484 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 523 (531)
++..|+.+...+..++..+..+...+..++..++..++.+
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555555555555555555443
No 95
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=42.33 E-value=41 Score=18.25 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 479 EVKEKRLASLETELRILSQQKMEV 502 (531)
Q Consensus 479 ~~l~~~~~~l~~~~~~~~~~~~~~ 502 (531)
+.+++.+..++.+++.++..++.+
T Consensus 4 ealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666665555544
No 96
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=41.33 E-value=59 Score=21.34 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 476 KDLEVKEKRLASLETELRILSQQKM 500 (531)
Q Consensus 476 ~~l~~l~~~~~~l~~~~~~~~~~~~ 500 (531)
.+..+|+.++..|..++.++..++.
T Consensus 26 ~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 26 LELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555666666666666655555543
No 97
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=41.13 E-value=80 Score=21.24 Aligned_cols=36 Identities=11% Similarity=0.012 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14063 477 DLEVKEKRLASLETELRILSQQKMEVETQLNCTGNE 512 (531)
Q Consensus 477 ~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 512 (531)
.+..++.+...|+.+-..+..++..+..++..|.+.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666666665555543
No 98
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=40.73 E-value=73 Score=20.71 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14063 480 VKEKRLASLETELRILSQQKME 501 (531)
Q Consensus 480 ~l~~~~~~l~~~~~~~~~~~~~ 501 (531)
.+..++..|...-..+..-+..
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~ 34 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKE 34 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443333333333333
No 99
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=40.55 E-value=57 Score=20.39 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=4.3
Q ss_pred HHHHHHHHhHHH
Q psy14063 503 ETQLNCTGNELK 514 (531)
Q Consensus 503 ~~~~~~l~~~~~ 514 (531)
+.++..+..++.
T Consensus 22 E~Ri~~LE~KLd 33 (43)
T 2pnv_A 22 EKRIVTLETKLE 33 (43)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 100
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=40.42 E-value=1e+02 Score=22.35 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14063 151 LADLEANLEKVQTTLTERK 169 (531)
Q Consensus 151 i~~~~~~i~~~e~~l~~~~ 169 (531)
+..++.+-...+..+..++
T Consensus 34 l~~l~~e~~~R~~~i~el~ 52 (101)
T 1d7m_A 34 LASLESEGAEREKRLRELE 52 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 101
>2wmm_A Chromosome partition protein MUKB; cell division, DNA condensation, nucleotide-binding, cell cycle, coiled coil, ATP-binding, DNA-binding, SMC; 2.30A {Escherichia coli}
Probab=40.30 E-value=23 Score=28.82 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=21.9
Q ss_pred cCcchHHHHHHHhc-cCCcEEecchHHHHH
Q psy14063 256 IDQKYDIAVSTACG-ALNYIVTETVEAGEA 284 (531)
Q Consensus 256 v~~~y~~Aie~~lg-~l~~ivv~~~~~a~~ 284 (531)
|+-.-+..+++++| ...+|||.+...+..
T Consensus 51 V~leDApYfsAlyGparhAIVV~Dl~~~~~ 80 (162)
T 2wmm_A 51 VSLEDAPYFSALYGPSRHAIVVPDLSQVTE 80 (162)
T ss_dssp CCTTTHHHHHHHTGGGGGCEEESCGGGTHH
T ss_pred cCcchhHHHHHHhcccceeeEeCCHHHHHH
Confidence 44444566788899 889999999887663
No 102
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=39.06 E-value=64 Score=28.55 Aligned_cols=47 Identities=13% Similarity=0.291 Sum_probs=22.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 175 LTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESM 221 (531)
Q Consensus 175 l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~ 221 (531)
++..+++++..+..+...+.++.+.....+..+..++..++++....
T Consensus 4 lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~i 50 (233)
T 2yko_A 4 LRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYV 50 (233)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444455555555555555555555555555555555444
No 103
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=38.90 E-value=90 Score=21.22 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy14063 476 KDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELK 514 (531)
Q Consensus 476 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 514 (531)
.....++.+.++|+.+-..+..++..++.++..|.+-+.
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777778888888888888888888887777766553
No 104
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=37.72 E-value=3e+02 Score=26.90 Aligned_cols=9 Identities=11% Similarity=-0.056 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy14063 132 IAKSELEIF 140 (531)
Q Consensus 132 ~~~~~~~~~ 140 (531)
.++..+..+
T Consensus 69 kLkn~L~~~ 77 (491)
T 1m1j_A 69 NIRQQLADS 77 (491)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 105
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=37.47 E-value=1e+02 Score=28.92 Aligned_cols=44 Identities=14% Similarity=0.093 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q psy14063 476 KDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQE 519 (531)
Q Consensus 476 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 519 (531)
.++..++..+...+..+..++..+..++.++..|++.+..+...
T Consensus 12 ~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 12 EEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666666666666666666665555543
No 106
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=37.30 E-value=96 Score=21.05 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy14063 485 LASLETELRILSQQKMEVETQLNCTGNELKYKK 517 (531)
Q Consensus 485 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 517 (531)
+.+|+.++..+..+-..+..++..|..++..++
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444443
No 107
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=35.16 E-value=2.6e+02 Score=28.10 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 191 ARLADLTREEAKLLDQVEKLAREVS 215 (531)
Q Consensus 191 ~~~~~l~~~~~~~~~~l~~l~~~l~ 215 (531)
.+...+..++..+..++..++.++.
T Consensus 123 ~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 123 ARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333
No 108
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=33.87 E-value=58 Score=19.16 Aligned_cols=12 Identities=42% Similarity=0.421 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q psy14063 40 LELENCVQRKHN 51 (531)
Q Consensus 40 ~~~~~~l~~l~~ 51 (531)
..++++...++.
T Consensus 18 ~~Le~EV~RL~~ 29 (36)
T 1kd8_A 18 WHLENEVARLEK 29 (36)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 109
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=33.46 E-value=3.2e+02 Score=27.34 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 194 ADLTREEAKLLDQVEKLAREVSEKRESM 221 (531)
Q Consensus 194 ~~l~~~~~~~~~~l~~l~~~l~~~~~~~ 221 (531)
..+..+...+..++..+..++.++..++
T Consensus 119 ~~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 119 QSLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554444443
No 110
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=32.81 E-value=82 Score=18.95 Aligned_cols=43 Identities=19% Similarity=0.246 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q psy14063 477 DLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQE 519 (531)
Q Consensus 477 ~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 519 (531)
-+..++.++..++.+-..+...----..-+.-+..++.+++..
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkk 46 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666555544433344444444444444443
No 111
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=32.80 E-value=1.2e+02 Score=28.57 Aligned_cols=6 Identities=33% Similarity=0.562 Sum_probs=2.4
Q ss_pred cccccc
Q psy14063 438 TLEGAI 443 (531)
Q Consensus 438 t~~g~~ 443 (531)
.|.|..
T Consensus 263 NLNG~Y 268 (323)
T 1lwu_C 263 HLNGKY 268 (323)
T ss_dssp ESSSCC
T ss_pred CCCccc
Confidence 344433
No 112
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=31.87 E-value=2e+02 Score=23.17 Aligned_cols=44 Identities=16% Similarity=0.037 Sum_probs=23.9
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14063 59 YVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKT 102 (531)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 102 (531)
+.++..+..+...++..++.+..++..+..+..++..+..+...
T Consensus 62 ~~le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aK 105 (146)
T 2xnx_M 62 NVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAK 105 (146)
T ss_dssp HHHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHH
Confidence 33444555666666666666666655555555555555444433
No 113
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=31.34 E-value=51 Score=21.18 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=4.9
Q ss_pred HhHHHHHHHHHHH
Q psy14063 88 KCTDEMESAKSEL 100 (531)
Q Consensus 88 ~~~~~~~~~~~~~ 100 (531)
++.++-+.+..++
T Consensus 29 elkkkweelkkki 41 (67)
T 1lq7_A 29 ELKKKWEELKKKI 41 (67)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 114
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=31.30 E-value=3e+02 Score=27.41 Aligned_cols=7 Identities=29% Similarity=0.017 Sum_probs=3.2
Q ss_pred HHHHHHH
Q psy14063 284 AVIAAVK 290 (531)
Q Consensus 284 ~~i~~Lk 290 (531)
.+++|+.
T Consensus 190 aL~~~~~ 196 (485)
T 3qne_A 190 ALINYGL 196 (485)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3445543
No 115
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=30.82 E-value=2.1e+02 Score=23.03 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=11.5
Q ss_pred hhhHHHHHhHHhhhhHHHHHHHhhcc
Q psy14063 5 YGKYDEERTEKLTRVQLVETDLKALE 30 (531)
Q Consensus 5 ~~~l~~~~~~~~~~~~~~e~~~~~Le 30 (531)
+..|...+..-..++..+..++..|.
T Consensus 61 Yk~Lhaev~~v~~~F~~Ld~~L~~l~ 86 (140)
T 1xaw_A 61 YKSLQSVLDEINKELSRLDKELDDYR 86 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33444444444444444444444443
No 116
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=30.19 E-value=68 Score=21.71 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 478 LEVKEKRLASLETELRILSQQKMEVETQLNCT 509 (531)
Q Consensus 478 l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l 509 (531)
+..|+.++..|+.+-..+..++..+..++..|
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 117
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=29.81 E-value=1.5e+02 Score=22.59 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy14063 476 KDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYK 516 (531)
Q Consensus 476 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 516 (531)
..+..|+.++..|..+-+.+...+..+...+..+.+...+.
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted~~n~ 46 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQ 46 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 45778888888888888888888888888888887665443
No 118
>3fld_A Protein TRAI, DNA helicase I; novel alpha/beta core domain, alternative initiation, ATP- binding, conjugation, DNA-binding, hydrolase; 2.40A {Escherichia coli k-12}
Probab=28.48 E-value=66 Score=25.93 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=22.6
Q ss_pred CCeEEEcCHHHHHHHHhhCCC-ccEEccCCc
Q psy14063 345 RETLVAQDLNQAKRIGYSGGG-YRMVTLEGA 374 (531)
Q Consensus 345 g~~~v~~~l~~A~~~~~~~~~-~~~vt~~G~ 374 (531)
|.+++++|+++|..+++.+|. ..++...|.
T Consensus 105 GeTllA~dl~~al~~Ar~~P~sGVvv~~~G~ 135 (153)
T 3fld_A 105 GESLLADNMQDGVRIARDNPDSGVVVRIAGE 135 (153)
T ss_dssp SEEEEESSHHHHHHHHHHCTTSEEEEESSCS
T ss_pred CcEEEecCHHHHHHHHHhCCCCceEEEecCC
Confidence 669999999999999988753 344445554
No 119
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=28.05 E-value=57 Score=29.20 Aligned_cols=41 Identities=24% Similarity=0.238 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy14063 476 KDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYK 516 (531)
Q Consensus 476 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 516 (531)
..+..++.++..+..+...+...+..+..++..++.+++.+
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566666665555555555555555555555555444
No 120
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=27.82 E-value=2.5e+02 Score=27.72 Aligned_cols=7 Identities=29% Similarity=0.159 Sum_probs=3.0
Q ss_pred HHHHHHH
Q psy14063 284 AVIAAVK 290 (531)
Q Consensus 284 ~~i~~Lk 290 (531)
.+++++.
T Consensus 198 aL~~~~~ 204 (455)
T 2dq0_A 198 ALIRFAL 204 (455)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 121
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.81 E-value=2.6e+02 Score=27.91 Aligned_cols=23 Identities=9% Similarity=0.329 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 193 LADLTREEAKLLDQVEKLAREVS 215 (531)
Q Consensus 193 ~~~l~~~~~~~~~~l~~l~~~l~ 215 (531)
...+..++..++.++..+..++.
T Consensus 80 ~~~l~~~i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 80 KEKLSNEKKEIIEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 122
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=27.61 E-value=1e+02 Score=18.44 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 476 KDLEVKEKRLASLETELRILSQQ 498 (531)
Q Consensus 476 ~~l~~l~~~~~~l~~~~~~~~~~ 498 (531)
.++..++.+++.+++++..+.+.
T Consensus 20 eelaaleselqalekklaalksk 42 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554444433
No 123
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=27.32 E-value=1.4e+02 Score=28.27 Aligned_cols=32 Identities=6% Similarity=0.087 Sum_probs=15.9
Q ss_pred hhHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Q psy14063 18 RVQLVETDLKALEPELRKAVNFLELENCVQRK 49 (531)
Q Consensus 18 ~~~~~e~~~~~Le~~~~~a~~~~~~~~~l~~l 49 (531)
+...+-+++..|++.++.+..|....+.+..+
T Consensus 30 ~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~ 61 (354)
T 3d5a_X 30 RYQSLSRRYAEMGEVIGLIREYRKVLEDLEQA 61 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555444444444
No 124
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=26.62 E-value=2.2e+02 Score=21.81 Aligned_cols=19 Identities=5% Similarity=0.148 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14063 204 LDQVEKLAREVSEKRESMQ 222 (531)
Q Consensus 204 ~~~l~~l~~~l~~~~~~~~ 222 (531)
+..+..++..+.+++.++.
T Consensus 68 ~~~Vs~lq~KiaeLKrqLA 86 (113)
T 4fi5_A 68 EGVAVSIQAKIDELKRQLA 86 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 125
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=26.58 E-value=2.5e+02 Score=27.70 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 193 LADLTREEAKLLDQVEKLAREVS 215 (531)
Q Consensus 193 ~~~l~~~~~~~~~~l~~l~~~l~ 215 (531)
...+..++..+..++..+..++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~ 100 (455)
T 2dq0_A 78 SREIVKRIGELENEVEELKKKID 100 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 126
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=26.52 E-value=2e+02 Score=21.38 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14063 205 DQVEKLAREVSEKRESMQ 222 (531)
Q Consensus 205 ~~l~~l~~~l~~~~~~~~ 222 (531)
..+..++..+.+++.++.
T Consensus 52 ~~V~~lq~Ki~elkr~lA 69 (96)
T 2ic9_A 52 AAVSALETKLGELKRELA 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 127
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=26.07 E-value=19 Score=22.80 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.1
Q ss_pred eEEccccccccccccccCCCc
Q psy14063 435 RMVTLEGAIIEPSGTMSGGGS 455 (531)
Q Consensus 435 ~~vt~~g~~~~~~g~~~gg~~ 455 (531)
--||-+|+.++-.|.+-||+.
T Consensus 35 invtwdgdtvtvegqleggsl 55 (62)
T 2gjh_A 35 INVTWDGDTVTVEGQLEGGSL 55 (62)
T ss_dssp CEEEECSSCEEEEEECCCCCC
T ss_pred ceeEEcCCEEEEEeEEcCCcc
Confidence 457999999999999998874
No 128
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=25.86 E-value=3.5e+02 Score=26.34 Aligned_cols=7 Identities=14% Similarity=0.135 Sum_probs=2.9
Q ss_pred HHHHHHH
Q psy14063 284 AVIAAVK 290 (531)
Q Consensus 284 ~~i~~Lk 290 (531)
.+++++.
T Consensus 171 aL~~~~~ 177 (421)
T 1ses_A 171 ALLRFAM 177 (421)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 129
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=25.75 E-value=1.3e+02 Score=18.81 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy14063 495 LSQQKMEVETQLNCTGN 511 (531)
Q Consensus 495 ~~~~~~~~~~~~~~l~~ 511 (531)
++.++..++.++..+..
T Consensus 21 LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 21 FEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333344433333
No 130
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=25.54 E-value=1.4e+02 Score=19.13 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=16.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 134 KSELEIFLSTQSKETKKLADLEANLEKVQTTLTERK 169 (531)
Q Consensus 134 ~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~ 169 (531)
-.+.+.++.+...+..++......+..++.+-....
T Consensus 9 ~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mK 44 (54)
T 1deb_A 9 LKQVEALKMENSNLRQELEDNSNHLTKLETEASNMK 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHH
Confidence 334444444444555555555555444444444333
No 131
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=24.33 E-value=1.1e+02 Score=27.46 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhh
Q psy14063 482 EKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTCL 524 (531)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 524 (531)
+..+.+++.++..+..+...+...+..++.++..++.+++.++
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666666666666666666666666666666666666553
No 132
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=23.84 E-value=2.7e+02 Score=21.90 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 180 PAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEK 217 (531)
Q Consensus 180 ~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~ 217 (531)
.-+..+++.+...+..+...+..++..+..+...++++
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555555555555555544443
No 133
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=23.13 E-value=2.1e+02 Score=27.92 Aligned_cols=6 Identities=17% Similarity=0.252 Sum_probs=2.4
Q ss_pred HHHHHh
Q psy14063 263 AVSTAC 268 (531)
Q Consensus 263 Aie~~l 268 (531)
.|+.++
T Consensus 130 lv~~~l 135 (412)
T 3u06_A 130 LIQSAL 135 (412)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334433
No 134
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=23.05 E-value=2.3e+02 Score=27.55 Aligned_cols=11 Identities=18% Similarity=0.196 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy14063 207 VEKLAREVSEK 217 (531)
Q Consensus 207 l~~l~~~l~~~ 217 (531)
...+-+.+.++
T Consensus 47 rr~l~n~~~~l 57 (412)
T 3u06_A 47 RKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 33333333333
No 135
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=22.64 E-value=2.4e+02 Score=27.56 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 191 ARLADLTREEAKLLDQVEKLAREV 214 (531)
Q Consensus 191 ~~~~~l~~~~~~~~~~l~~l~~~l 214 (531)
.+...+..++..+..++..+..++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~ 94 (421)
T 1ses_A 71 ARGKALGEEAKRLEEALREKEARL 94 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444433
No 136
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=22.54 E-value=1.4e+02 Score=22.06 Aligned_cols=18 Identities=6% Similarity=-0.082 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14063 36 AVNFLELENCVQRKHNEI 53 (531)
Q Consensus 36 a~~~~~~~~~l~~l~~~l 53 (531)
+.++..+..++..++..+
T Consensus 22 a~~~~~lk~E~~~lk~E~ 39 (93)
T 3sjb_C 22 SKKYLAKVKERHELKEFN 39 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555556666555444
No 137
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=22.14 E-value=3.1e+02 Score=22.12 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=12.3
Q ss_pred HHHHhhhHHHHHHHHHH---HHHHHHHHHHHH
Q psy14063 138 EIFLSTQSKETKKLADL---EANLEKVQTTLT 166 (531)
Q Consensus 138 ~~~~~~~~~~~~~i~~~---~~~i~~~e~~l~ 166 (531)
..++..+..+..++..+ ...+.++...++
T Consensus 19 qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~ 50 (151)
T 2zdi_C 19 QVLQAQAQILAQNLELLNLAKAEVQTVRETLE 50 (151)
T ss_dssp HHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444 444444444433
No 138
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=22.05 E-value=4.7e+02 Score=25.99 Aligned_cols=7 Identities=14% Similarity=0.150 Sum_probs=3.0
Q ss_pred HHHHHHH
Q psy14063 284 AVIAAVK 290 (531)
Q Consensus 284 ~~i~~Lk 290 (531)
.+++|+.
T Consensus 213 aL~~f~~ 219 (484)
T 3lss_A 213 ALVSYSL 219 (484)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 139
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=22.04 E-value=3.9e+02 Score=23.53 Aligned_cols=15 Identities=7% Similarity=0.299 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy14063 200 EAKLLDQVEKLAREV 214 (531)
Q Consensus 200 ~~~~~~~l~~l~~~l 214 (531)
.......+.+.+..+
T Consensus 194 ~~s~~~~~~~~~~~~ 208 (228)
T 3q0x_A 194 RDSMVAQLAQCRQQL 208 (228)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 140
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=21.01 E-value=20 Score=25.17 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=14.7
Q ss_pred eeEEccccccccccccccCCCc
Q psy14063 434 YRMVTLEGAIIEPSGTMSGGGS 455 (531)
Q Consensus 434 ~~~vt~~g~~~~~~g~~~gg~~ 455 (531)
.--||++|+.++-.|.+-||+.
T Consensus 78 dinvtfdgdtvtvegqleggsl 99 (106)
T 1qys_A 78 DINVTFDGDTVTVEGQLEGGSL 99 (106)
T ss_dssp EEEEEEETTEEEEEEEC-----
T ss_pred ceeEEEcCCeEEEEeEEcCCcc
Confidence 3457999999999999998874
No 141
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=20.71 E-value=2.6e+02 Score=20.59 Aligned_cols=7 Identities=0% Similarity=-0.173 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy14063 145 SKETKKL 151 (531)
Q Consensus 145 ~~~~~~i 151 (531)
..++++.
T Consensus 31 RtlKNRg 37 (90)
T 2wt7_B 31 RTLKNRG 37 (90)
T ss_dssp HHHHHHH
T ss_pred HhhhhhH
Confidence 3333333
No 142
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=20.15 E-value=5.1e+02 Score=23.84 Aligned_cols=46 Identities=15% Similarity=0.240 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063 177 TRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQ 222 (531)
Q Consensus 177 ~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~ 222 (531)
.++..+......++..+..+..-......++.-.+..+..+...+.
T Consensus 90 ~e~~~~~~n~e~l~~rl~aL~~~~~~~~~eLsf~kgd~~~ier~ln 135 (302)
T 2y3a_B 90 KEMQRILLNSERLKSRIAEIHESRTKLEQDLRAQASDNREIDKRMN 135 (302)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhhHHHhHHhhhc
Confidence 3444444444445555555555555555555555555444433333
Done!