RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14063
(531 letters)
>3l51_B Structural maintenance of chromosomes protein 4; structural
maintenance of chromosomes (SMC), hinge domain, C cycle,
cell division, cytoplasm; 1.51A {Mus musculus}
Length = 166
Score = 181 bits (462), Expect = 5e-55
Identities = 73/152 (48%), Positives = 107/152 (70%), Gaps = 2/152 (1%)
Query: 229 RLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAA 288
+++D ++Q K R+ GI GRLGDLG ID+KYDIA+S+ C AL+YIV ++++ + +
Sbjct: 2 KVLDAIIQEKKSGRIPGIYGRLGDLGAIDEKYDIAISSCCHALDYIVVDSIDTAQECVNF 61
Query: 289 VKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETL 348
+K+ N+G I LDKM + + K +TPEN PRL DL++V++E+IR AFYFA R+TL
Sbjct: 62 LKKHNIGIATFIGLDKMTVWAKK-MSKIQTPENTPRLFDLVKVKNEEIRQAFYFALRDTL 120
Query: 349 VAQDLNQAKRIGYSGGG-YRMVTLEGAIIEPS 379
VA +L+QA R+ Y +R+VTL+G IIE S
Sbjct: 121 VANNLDQATRVAYQRDRRWRVVTLQGQIIEQS 152
Score = 66.4 bits (163), Expect = 4e-13
Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 415 TLVAQDLNQAKRIGYSGGG-YRMVTLEGAIIEPSGTMSGGGSNP 457
TLVA +L+QA R+ Y +R+VTL+G IIE SGTMSGG +
Sbjct: 119 TLVANNLDQATRVAYQRDRRWRVVTLQGQIIEQSGTMSGGLEHH 162
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell
cycle, cell division; 2.70A {Mus musculus}
Length = 233
Score = 159 bits (403), Expect = 1e-45
Identities = 43/190 (22%), Positives = 87/190 (45%), Gaps = 6/190 (3%)
Query: 193 LADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGD 252
+ R ++ ++ ++ ++ + R Q S R + + +K + GRL D
Sbjct: 3 VEMAKRRIDEINKELNQVMEQLGDARIDRQESSRQQRKAEIMESIKRLYP-GSVYGRLID 61
Query: 253 LGG-IDQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHS 310
L +KY IAV+ G ++ I+ ++ + G I +K Q +PLD ++ +
Sbjct: 62 LCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPT 121
Query: 311 QCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGG-YRMV 369
+K R + +ID+I+ + I+ A +A LV ++ A+RI + G ++ V
Sbjct: 122 D--EKLRELKGAKLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTV 179
Query: 370 TLEGAIIEPS 379
L+G + + S
Sbjct: 180 ALDGTLFQKS 189
Score = 68.9 bits (169), Expect = 2e-13
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
Query: 415 TLVAQDLNQAKRIGYSGGG-YRMVTLEGAIIEPSGTMSGGGSNP-IRGLMGRKATVSTDT 472
LV ++ A+RI + G ++ V L+G + + SG +SGG S+ + +
Sbjct: 156 ALVCDNVEDARRIAFGGHQRHKTVALDGTLFQKSGVISGGASDLKAKARRWDE------- 208
Query: 473 SLVKDLEVKEKRLASLETELRILSQQK 499
K ++ +++ L EL
Sbjct: 209 ---KAVDKLKEKKGRLTEELLEHHHHH 232
>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain,
anti parallel coiled coil, SMC proteins; 2.0A
{Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A
Length = 186
Score = 154 bits (392), Expect = 1e-44
Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 5/169 (2%)
Query: 213 EVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGA-L 271
E M+ R +R + V + K R G++ + +L +D+KY +AVS G
Sbjct: 1 EKEMIERDMREYRGFSRAVRAVFEEK--ERFPGLVDVVSNLIEVDEKYSLAVSVLLGGTA 58
Query: 272 NYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQV 331
IV V+ +A++ +K+ GRV ++PLD + ++ V +DL++
Sbjct: 59 QNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRISGLENERGFVGYAVDLVKF 118
Query: 332 QDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGG-YRMVTLEGAIIEPS 379
+ + F ++V + L+ A R+ R+ TL+G +I
Sbjct: 119 -PSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGR 166
Score = 71.9 bits (177), Expect = 7e-15
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 415 TLVAQDLNQAKRIGYSGGG-YRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRK 465
++V + L+ A R+ R+ TL+G +I G ++GG + R+
Sbjct: 133 SVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGREERSSNVFERR 184
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain,
anti parallel coiled coil, SMC proteins; 3.0A
{Thermotoga maritima} SCOP: d.215.1.1
Length = 213
Score = 150 bits (382), Expect = 7e-43
Identities = 40/176 (22%), Positives = 79/176 (44%), Gaps = 5/176 (2%)
Query: 206 QVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVS 265
++ ++ E M+ R +R + V + K R G++ + +L +D+KY +AVS
Sbjct: 6 RLREIQFEKEMIERDMREYRGFSRAVRAVFEEK--ERFPGLVDVVSNLIEVDEKYSLAVS 63
Query: 266 TACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPR 324
G IV V+ +A++ +K+ GRV ++PLD + ++ V
Sbjct: 64 VLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRISGLENERGFVGY 123
Query: 325 LIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYS-GGGYRMVTLEGAIIEPS 379
+DL++ + + F ++V + L+ A R+ R+ TL+G +I
Sbjct: 124 AVDLVKF-PSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGR 178
Score = 71.9 bits (177), Expect = 1e-14
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Query: 415 TLVAQDLNQAKRIGYS-GGGYRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVSTDTS 473
++V + L+ A R+ R+ TL+G +I G ++GG + R+
Sbjct: 145 SVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGREERSSNVFERR-------- 196
Query: 474 LVKDLEVKEKRLASLETEL 492
L+ E+ + E ++
Sbjct: 197 --IKLKHLEQEMEETERQI 213
>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge
domai dimerization, DNA binding, cell cycle; 1.70A
{Pyrococcus furiosus}
Length = 189
Score = 127 bits (321), Expect = 2e-34
Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 14/169 (8%)
Query: 213 EVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGI-DQKYDIAVSTACG-A 270
E SE+ ++ R +LK + + GI G L +L + D+ Y +A+ A G
Sbjct: 4 ESSERELIAAEAQREVRGNRAAEELK-RSGIGGIYGTLAELIKVKDEAYALAIEVALGNR 62
Query: 271 LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQ 330
+ +V E E I +K +GR+ +PL+K++ K+ +D+I+
Sbjct: 63 ADNVVVEDELVAEKAIKYLKEHKLGRLTFLPLNKIKP-------KHVDSSVGLPAVDVIE 115
Query: 331 VQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPS 379
D+KI A FA +T++ + +A+ RMVT+EG + E S
Sbjct: 116 Y-DQKIENAVKFALGDTVIVNSMEEARPHIGK---VRMVTIEGELYERS 160
Score = 59.6 bits (145), Expect = 2e-10
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 415 TLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRG-LMGRK 465
T++ + +A+ RMVT+EG + E SG ++GG + K
Sbjct: 131 TVIVNSMEEARPHIGK---VRMVTIEGELYERSGAITGGHFRARGLAVDTTK 179
>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell
cycle, cell division; 2.70A {Mus musculus}
Length = 213
Score = 123 bits (312), Expect = 7e-33
Identities = 27/184 (14%), Positives = 73/184 (39%), Gaps = 11/184 (5%)
Query: 201 AKLLDQVEKLAREVSEK--RESMQTSRSNNRLIDFVMQLK-SENRVSGILGRLGDLGGID 257
A + +EK + + + + S N++++ + +++ +G G + + +
Sbjct: 1 AAKREDLEKKQQLLRAATGKAILNGIDSINKVLEHFRRKGINQHVQNGYHGIVMNNFECE 60
Query: 258 QKYDIAVSTA-CGALNYIVTETVE-AGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDK 315
+ V L Y + ++ E + + ++ K G V +PL+K+ +
Sbjct: 61 PAFYTCVEVTAGNRLFYHIVDSDEVSTKILMEFNKMNLPGEVTFLPLNKLDVRDTA---- 116
Query: 316 YRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAI 375
Y + +I ++ + + AF +TL+ + + + ++ + +TLEG
Sbjct: 117 YPETNDAIPMISKLRY-NPRFDKAFKHVFGKTLICRSMEVSTQLARA-FTMDCITLEGDQ 174
Query: 376 IEPS 379
+
Sbjct: 175 VSHR 178
Score = 64.7 bits (158), Expect = 4e-12
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 415 TLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVSTDTSL 474
TL+ + + + ++ + +TLEG + G ++GG + + + +
Sbjct: 147 TLICRSMEVSTQLARAFT-MDCITLEGDQVSHRGALTGGYYDTRKSRLELQ--------- 196
Query: 475 VKDLEVKEKRLASLETEL 492
KD+ E+ L LE +L
Sbjct: 197 -KDVRKAEEELGELEAKL 213
>3l51_A Structural maintenance of chromosomes protein 2; structural
maintenance of chromosomes (SMC), hinge domain, C cycle,
cell division, cytoplasm; 1.51A {Mus musculus}
Length = 161
Score = 106 bits (267), Expect = 3e-27
Identities = 30/158 (18%), Positives = 63/158 (39%), Gaps = 12/158 (7%)
Query: 231 IDFVMQLKSENR-VSGILGRLGDLGGI-DQKYDIAVSTACGA-LNYIVTETVEAGEAVIA 287
+ F + +N + + G + L + D A+ G L +V +T + ++
Sbjct: 1 LQFAYKDPEKNWNRNSVKGLVASLINVKDNSTATALEVVAGERLYNVVVDTEVTAKKLLE 60
Query: 288 AVKRQNVGRVNVIPLDKMQQYH-----SQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYF 342
+ + R +IPL+K+ + P+NV + L+ +++ F
Sbjct: 61 KGELK--RRYTIIPLNKISARCIAPETLRVAQNLVGPDNVHVALSLVDY-KPELQKGMEF 117
Query: 343 ATRETLVAQDLNQAKRIGYS-GGGYRMVTLEGAIIEPS 379
T V +++ AK++ + R VTL G + +P
Sbjct: 118 VFGTTFVCNNMDNAKKVAFDKRIMTRTVTLGGDVFDPH 155
Score = 59.1 bits (144), Expect = 1e-10
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 415 TLVAQDLNQAKRIGYS-GGGYRMVTLEGAIIEPSGTMSGG 453
T V +++ AK++ + R VTL G + +P GT+SGG
Sbjct: 122 TFVCNNMDNAKKVAFDKRIMTRTVTLGGDVFDPHGTLSGG 161
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 83.0 bits (204), Expect = 1e-16
Identities = 87/488 (17%), Positives = 147/488 (30%), Gaps = 145/488 (29%)
Query: 4 LYGKYDEERTEKLTRVQLVETDLKALEPELR----------KAVNFLELENC----VQRK 49
++ KY+ R + +++ L L P K + L+ C VQ K
Sbjct: 125 VFAKYNVSRLQPYLKLR---QALLELRPAKNVLIDGVLGSGKTW--VALDVCLSYKVQCK 179
Query: 50 H-NEIYQYERYVNMKNLGEHETKVQ-------QMEQELTANLESIKKCTDEMESAKSELK 101
+I+ ++N+KN ET ++ Q++ T+ + + S ++EL+
Sbjct: 180 MDFKIF----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 102 T--VEKKGKES-----NVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLAD- 153
K + NV +K W+ F+ C +I L+T+ K+ + D
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKA-WNAFN----LSC-------KILLTTRFKQ---VTDF 280
Query: 154 LEAN------LEKVQTTLTERKT--------------LCEELTTRVPAMESEIAESRARL 193
L A L+ TLT + L E+ T P S IAE
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE----- 335
Query: 194 ADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKS-ENRVSGILGRLGD 252
R+ D + + + + +++S + L+ E R
Sbjct: 336 --SIRDGLATWDNWKHVNCD--KLTTIIESS---------LNVLEPAEYR-----KMFDR 377
Query: 253 LGGIDQKYDIAVSTAC---GALNYIVTETVEAGEAVIAAVKRQNVGRVNVIP-------- 301
L I + V + V++Q IP
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 302 -LDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIG 360
L+ H D Y P+ DLI ++ YF
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFD-SDDLIPPYLDQ-----YF------------------ 473
Query: 361 YSGGGYRMVTLEGAIIEPSETLVAQDLN--QAKRIGYSGGGYRMVTLEGAIIEPSETLVA 418
YS G+ + +E +V D + K I + T A TL
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK-IRHDS------TAWNASGSILNTL-- 524
Query: 419 QDLNQAKR 426
Q L K
Sbjct: 525 QQLKFYKP 532
Score = 64.5 bits (156), Expect = 5e-11
Identities = 87/543 (16%), Positives = 162/543 (29%), Gaps = 177/543 (32%)
Query: 64 NLGEHETKVQQMEQELTANLESIKK---CTDEMESAKSELKTVEKKGKESNVIGSKFRWS 120
GEH+ + + + L+ ++ C D + KS L E ++I SK S
Sbjct: 10 ETGEHQYQYKDI---LSVFEDAFVDNFDCKDVQDMPKSILSKEEID----HIIMSKDAVS 62
Query: 121 VFSAKTRFECDIAKSELEIFLSTQSKETKKLAD--LEANLEKVQTTLTERKTLCEELTTR 178
T LS Q + +K + L N + + + + R
Sbjct: 63 ----GTLR-------LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE--------QR 103
Query: 179 VPAMESEIAESRARLADLTREEAKLLDQVEKLA-REVSEKRESMQTSRSNNRLIDFVMQL 237
P+M + + R+ +L + + A VS R +L +++L
Sbjct: 104 QPSMMTRMYIE-------QRD--RLYNDNQVFAKYNVS--RLQPYL-----KLRQALLEL 147
Query: 238 KSENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIA-AVKRQ---- 292
+ V I G LG G +T A + ++ V+ +
Sbjct: 148 RPAKNV-LIDGVLG----------------SG-------KTWVALDVCLSYKVQCKMDFK 183
Query: 293 ----NVGRVN-----VIPLDKM-----QQYHSQCYDKYRTPENV---------------- 322
N+ N + L K+ + S+ +
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 323 PR-LIDLIQVQDEKIRLAFYFA------TRETLVAQDLNQAKRIGYSGGGYRMVTLEGAI 375
L+ L+ VQ+ K AF + TR V L+ A S + +
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS-----LDHHSMTL 298
Query: 376 IEP-SETLVA-------QDL-NQAK-------------------RIGYSGGGYRMVTLE- 406
++L+ QDL + ++ V +
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN----WKHVNCDK 354
Query: 407 -GAIIEPS-ETLVAQDLNQAKRIGYSGGGYRMVTL--EGAIIEPSGTMSGGGSNPIRGLM 462
IIE S L + + + +++ A I P+ +S + I+ +
Sbjct: 355 LTTIIESSLNVLEPAEYRKM---------FDRLSVFPPSAHI-PTILLSLIWFDVIKSDV 404
Query: 463 GRKATVSTDTSLV-KDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNEL--KYK-KQ 518
SLV K + + S+ EL+ K+E E L+ + Y +
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELK----VKLENEYALH---RSIVDHYNIPK 457
Query: 519 EYD 521
+D
Sbjct: 458 TFD 460
Score = 47.2 bits (111), Expect = 1e-05
Identities = 60/422 (14%), Positives = 127/422 (30%), Gaps = 98/422 (23%)
Query: 1 MEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENC------VQRKHNEIY 54
++ L + D T + ++ + +++ ELR+ + ENC VQ + +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAW 259
Query: 55 QY----------ERYVNMKN-LGEHETKVQQMEQELTANLESIKKCTDEMES--AK---- 97
R+ + + L T ++ + L DE++S K
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLD-HHSMTLT-----PDEVKSLLLKYLDC 313
Query: 98 --SELKTVEKKGKES----NVIGSKF-----RWSVFSAKTRFECDIAKSELEIFLSTQS- 145
+L + ++I W + CD + +E L+
Sbjct: 314 RPQDLPREVLTT--NPRRLSIIAESIRDGLATWDNWK---HVNCDKLTTIIESSLNVLEP 368
Query: 146 KETKKL-ADLEANLEKVQTTLTERKTLC---EELTTRVP-----------AMESEIAESR 190
E +K+ L L ++ +E + ES
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPT---ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 191 ARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFV------------MQLK 238
+ + E L+ L R + + +T S++ + ++ ++
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 239 SENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYI--VTETVEAGEAVIAAVKRQNVGR 296
R++ D ++QK STA A I + ++ + I +
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Query: 297 VNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQA 356
VN I LD + + + DL++ +A E + + Q
Sbjct: 545 VNAI-LDFLPKIEENL---ICSKY-----TDLLR-------IALMAED-EAIFEEAHKQV 587
Query: 357 KR 358
+R
Sbjct: 588 QR 589
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 56.4 bits (136), Expect = 2e-08
Identities = 39/227 (17%), Positives = 88/227 (38%), Gaps = 18/227 (7%)
Query: 7 KYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVN--MKN 64
+ +E E R++ E + L+ E +K ++ + ++ + E
Sbjct: 924 ELEEILHEMEARIEEEEERSQQLQAEKKK------MQQQMLDLEEQLEEEEAARQKLQLE 977
Query: 65 LGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSA 124
+ K+++ME ++ + K T E + + + + E
Sbjct: 978 KVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT------ 1031
Query: 125 KTRFECDIAKSELEIFLSTQSKET----KKLADLEANLEKVQTTLTERKTLCEELTTRVP 180
K + + + SELE+ L + K K LE + + E + EL ++
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091
Query: 181 AMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSN 227
E E+ + ARL D T ++ L ++ +L +S+ +E +++ ++
Sbjct: 1092 KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAA 1138
Score = 40.6 bits (95), Expect = 0.001
Identities = 15/99 (15%), Positives = 43/99 (43%)
Query: 124 AKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAME 183
+T+ A++EL+ ++ ++ L+ L+ E + + L + +E
Sbjct: 867 QRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELE 926
Query: 184 SEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQ 222
+ E AR+ + +L + +K+ +++ + E ++
Sbjct: 927 EILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLE 965
Score = 39.0 bits (91), Expect = 0.004
Identities = 26/179 (14%), Positives = 60/179 (33%), Gaps = 16/179 (8%)
Query: 10 EERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHE 69
E EK + ++ +++ EL + E K + E + + E +
Sbjct: 1021 AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ 1080
Query: 70 TKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSAKTRFE 129
++ +++ +L E ++ +E S+ KK +E
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRE----------------LESH 1124
Query: 130 CDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAE 188
+ +LE + ++K K+ DL LE ++T L + + + +
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 35.2 bits (81), Expect = 0.066
Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 7 KYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLG 66
K + E ++ ++ ++ + L+ +L K E E E ++ +K +
Sbjct: 1064 KLEGESSDLHEQIAELQAQIAELKAQLAK----KEEELQAALARLEDETSQKNNALKKIR 1119
Query: 67 EHETKVQQMEQELTANLESIKKCTDEMESAKSELK 101
E E+ + ++++ LES K ++ E K +L
Sbjct: 1120 ELESHISDLQED----LESEKAARNKAEKQKRDLS 1150
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 51.6 bits (124), Expect = 6e-07
Identities = 40/216 (18%), Positives = 84/216 (38%), Gaps = 22/216 (10%)
Query: 7 KYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLG 66
+ R + + +LK L+ E R + N+I Q +R +
Sbjct: 887 LKAIVYLQCCYRRMMAKRELKKLKIEARSV---ERYKKLHIGLENKIMQLQR-----KID 938
Query: 67 EHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSAKT 126
E + + + +++ + T+++ S L+ E++ K + + + AK
Sbjct: 939 EQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEI--AKL 996
Query: 127 RFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEI 186
R E ++E + K + L + L++ T L K EEL R+ EI
Sbjct: 997 RKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEK---EELNRRIHDQAKEI 1053
Query: 187 AESRARLADLTREEAKLLDQVEKLAREVSEKRESMQ 222
E+ E KL+++ ++L +++++R Q
Sbjct: 1054 TET---------MEKKLVEETKQLELDLNDERLRYQ 1080
Score = 42.0 bits (99), Expect = 5e-04
Identities = 21/180 (11%), Positives = 56/180 (31%), Gaps = 7/180 (3%)
Query: 48 RKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKG 107
R + +Y+ + + + + + L K + + L V
Sbjct: 827 RMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLRE-HKSIIIQKHVRGWLARVHYHR 885
Query: 108 KESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTE 167
++ + + AK + +L+I + + K LE + ++Q + E
Sbjct: 886 TLKAIVYLQCCYRRMMAKRELK------KLKIEARSVERYKKLHIGLENKIMQLQRKIDE 939
Query: 168 RKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSN 227
+ + L ++ +E + +L ++ + V +E + R
Sbjct: 940 QNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE 999
Score = 40.9 bits (96), Expect = 0.001
Identities = 26/186 (13%), Positives = 64/186 (34%), Gaps = 7/186 (3%)
Query: 41 ELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSEL 100
+ + + ++ +++V H + + L + E++ K E
Sbjct: 855 RNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMA-KRELKKLKIEA 913
Query: 101 KTVEKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEK 160
++VE+ K + +K + + + D E + L + + L
Sbjct: 914 RSVERYKKLHIGLENKIM------QLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRS 967
Query: 161 VQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRES 220
L + + T RV +++ EIA+ R L E+ + + +K E +
Sbjct: 968 DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027
Query: 221 MQTSRS 226
++ +
Sbjct: 1028 LKEQNT 1033
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 2e-04
Identities = 64/452 (14%), Positives = 128/452 (28%), Gaps = 166/452 (36%)
Query: 73 QQMEQELTANLE--SIKKCTDEMESAKSELKT-----VEKKGKESNVIGSKFRWSVFSAK 125
Q++++ L + D+ + +EL V + S V +F +
Sbjct: 31 SQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKV--GQFDQVLNLCL 88
Query: 126 TRFECDIAKSELEIFLSTQSKETKKLADLEANL-EKVQTTLTERKTLCE------ELTTR 178
T FE +L + + LA A L ++ TTL + K L + + R
Sbjct: 89 TEFENC--------YL--EGNDIHALA---AKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 179 --VPAMES----------------------------EIAE----SRARLADLTREEAKLL 204
S E+ + + DL + A+ L
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 205 DQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKY--DI 262
+L R + + + ++ + L++ + D+ Y I
Sbjct: 196 ---SELIRTTLD------AEKVFTQGLNILEWLENPSNTP------------DKDYLLSI 234
Query: 263 AVS------TACGALNYIVT---------E-------TVEAGEAVIAAVKRQNVGRVNVI 300
+S +Y+VT E + ++ AV I
Sbjct: 235 PISCPLIGVIQLA--HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV---------AI 283
Query: 301 PLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATR-------ETLVAQDL 353
++ + E + I + F+ R +L L
Sbjct: 284 ---------AET----DSWE------SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 354 NQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQD---LNQAKRIGYS-GGGYRMVTLEGAI 409
+ M+++ E + V + L K++ S G + + + G
Sbjct: 325 EDSLENNEGVPSP-MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG-- 381
Query: 410 IEPSETLVA-----------QDLNQAKRIGYS 430
P ++L L+Q+ RI +S
Sbjct: 382 --PPQSLYGLNLTLRKAKAPSGLDQS-RIPFS 410
Score = 40.8 bits (95), Expect = 0.001
Identities = 46/305 (15%), Positives = 92/305 (30%), Gaps = 99/305 (32%)
Query: 66 GEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSAK 125
G E Q M +L ++ + + ++ + G FS
Sbjct: 1625 GSQE---QGMGMDLYKTSKAAQDVWNRADN-----HFKDTYG--------------FSIL 1662
Query: 126 TRFECDIAKS---ELEI-FLSTQSKETKK---------LADLEANLEKVQTTLTERKTLC 172
DI + L I F + K ++ + D + EK+ + E T
Sbjct: 1663 -----DIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY 1717
Query: 173 ------EELT-TRV--PAMESEIAESRARLADLTREE----------------------- 200
L+ T+ PA+ +A DL + +
Sbjct: 1718 TFRSEKGLLSATQFTQPAL---TLMEKAAFEDL-KSKGLIPADATFAGHSLGEYAALASL 1773
Query: 201 AKLLDQVEKLAREVSEKR-ESMQTS--RSNNRLIDFVMQLKSENRVSGILGRLGDLGGID 257
A ++ +E L V R +MQ + R ++ M + RV+ + ++
Sbjct: 1774 ADVMS-IESLVEVV-FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE 1831
Query: 258 QKYDIAVSTACGAL----NY-------IVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQ 306
+ V G L NY + + A + V + + ++++I L +
Sbjct: 1832 R-----VGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIEL--QK 1884
Query: 307 QYHSQ 311
+
Sbjct: 1885 SLSLE 1889
Score = 40.4 bits (94), Expect = 0.002
Identities = 81/492 (16%), Positives = 142/492 (28%), Gaps = 190/492 (38%)
Query: 4 LYGKYD-------EERTEKLTRVQLVETDLKALEPELRKAVNFLE-LENCVQRKHNEIY- 54
LY Y + E L+ +L+ T L A E + +N LE LEN ++ Y
Sbjct: 176 LYQTYHVLVGDLIKFSAETLS--ELIRTTLDA-EKVFTQGLNILEWLEN-PSNTPDKDYL 231
Query: 55 -------------QYERYVNM-KNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSEL 100
Q YV K LG EL + L+ + + +A
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFTP-------GELRSYLKGATGHSQGLVTAV--- 281
Query: 101 KTVEKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEI--FLSTQSKETKKLADLEANL 158
I W F + + + F+ + E L ++
Sbjct: 282 -----------AIAETDSWESFF-------VSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 159 EKVQTTLTERKTLCEELTTRVPA-MESEIAESRARLA--DLTREEAKLLDQVEKLAREVS 215
++ +L + VP+ M L+ +LT+E QV+ +
Sbjct: 324 --LEDSLENNEG--------VPSPM----------LSISNLTQE------QVQDYVNKT- 356
Query: 216 EKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIV 275
N+ L + + +S GA N +V
Sbjct: 357 -----------NSHL--------PAGK------------------QVEISLVNGAKNLVV 379
Query: 276 T---ETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQ------------YHSQCYDKYRTPE 320
+ +++ + K + + IP + + +HS P
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS----HLLVPA 435
Query: 321 NVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIG-YS-GGGYRMVTLEGAIIEP 378
+ DLI K ++F A+D+ +I Y G + L G+I
Sbjct: 436 S-----DLINKDLVKNNVSFN--------AKDI----QIPVYDTFDGSDLRVLSGSIS-- 476
Query: 379 SETLVAQ------DLNQAKRIGYS-------GGGYRMVTL-----EGA---IIEPSETLV 417
E +V + + GG + L +G +I TL
Sbjct: 477 -ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAG-TL- 533
Query: 418 AQDLNQAKRIGY 429
D+N G+
Sbjct: 534 --DINPDDDYGF 543
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 40.8 bits (96), Expect = 0.001
Identities = 21/206 (10%), Positives = 57/206 (27%), Gaps = 32/206 (15%)
Query: 2 EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQ-YERYV 60
++ K + +++ ALE ++ L +E Q+K + Q Y R +
Sbjct: 836 KLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRIL 895
Query: 61 NMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWS 120
V E ++ +++ +E+ E +++E +
Sbjct: 896 KKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNS----------- 944
Query: 121 VFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVP 180
D+ ++ + E+ T ++ + +
Sbjct: 945 ----------DLLSILAQL-------TELNYNGVPELTERKDTFFAQQW---TGVKSSAE 984
Query: 181 AMESEIAESRARLADLTREEAKLLDQ 206
++ + RL +
Sbjct: 985 TYKNTLLAELERLQKIEDLHHHHHHH 1010
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 39.9 bits (93), Expect = 0.002
Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 17/190 (8%)
Query: 64 NLGEHET--KVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSV 121
+ GE K++++E E L +K E EL+ V +
Sbjct: 89 SPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIED---- 144
Query: 122 FSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQT--TLTERKTLCEELTTRV 179
+ DI + + ++E ++ L L+K T E + +E ++
Sbjct: 145 -----EKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETV-MVKEYRDKI 198
Query: 180 PAMESEI-AESRARLADLTREEAKLLDQV-EKLAREVSEKRESMQTSRSNNRLIDFVMQL 237
A+++ I E + +E A + V E + EV M T+ + R I+ +L
Sbjct: 199 DALKNAIEVERDGMQEEAIQEIAGMTADVLEAASEEVPLIGAGMATAVATGRAIEGAYKL 258
Query: 238 KSE-NRVSGI 246
K N +SGI
Sbjct: 259 KKVINALSGI 268
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.9 bits (82), Expect = 0.018
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 183 ESEI-----AESRARLADLTREEAKLLDQ-VEKLAREVSE----KRESMQTSRSNNRLID 232
E E E R RL +L + + EK +++ E + E ++ ++ NNR+ D
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
Query: 233 --FVMQLKSE 240
F Q ++
Sbjct: 143 KAFYQQPDAD 152
Score = 27.8 bits (61), Expect = 7.1
Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 167 ERKTLCEELTTRVPAMESEIAES-RARLADLTREEAKLLDQVEKLAREVSEK 217
E++ +EL ME E E + L + + +++ +++ + R +
Sbjct: 93 EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 33.5 bits (76), Expect = 0.13
Identities = 33/220 (15%), Positives = 81/220 (36%), Gaps = 19/220 (8%)
Query: 10 EERTEKLTRVQLVETDLKALEPELRKA---VNFLELENCVQRKHNEIYQYERYVNMKNLG 66
++ L R E D KA E ++ + L+ + + Y + L
Sbjct: 13 LDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLE 72
Query: 67 EHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSAKT 126
E K E ++ + I+ +E++ A+ L T +K +E+
Sbjct: 73 LAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEA---------------- 116
Query: 127 RFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEI 186
D ++ +++ S K+ +K+ E L++ + + EE+ ++ +ES++
Sbjct: 117 EKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDL 176
Query: 187 AESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRS 226
+ R + A+L ++++ + + +
Sbjct: 177 ERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQ 216
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 33.5 bits (76), Expect = 0.13
Identities = 13/171 (7%), Positives = 55/171 (32%), Gaps = 7/171 (4%)
Query: 63 KNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVF 122
K + E +++ ++L L + + + + E ++ + ++ +
Sbjct: 18 KEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIA 77
Query: 123 SAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAM 182
S + + ++ EL + + + + + + + + +
Sbjct: 78 SIQKKMSEIKSERELR-------SLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDL 130
Query: 183 ESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDF 233
+ E+ E +L + +++ + + +K+E + +
Sbjct: 131 KKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFY 181
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 31.8 bits (72), Expect = 0.19
Identities = 18/79 (22%), Positives = 35/79 (44%)
Query: 144 QSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKL 203
++ DL+ ++ Q L + + C++L +E+++ E RL D A+L
Sbjct: 43 MVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAEL 102
Query: 204 LDQVEKLAREVSEKRESMQ 222
+ KL E SE + +
Sbjct: 103 TAKKRKLEDECSELKRDID 121
Score = 27.5 bits (61), Expect = 4.7
Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 9/132 (6%)
Query: 71 KVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSAKTRFEC 130
K + E+E+ + E + + +E +++ K +E+K +++ K + +
Sbjct: 7 KSAEREKEMASMKEEFTRLKEALEKSEARRKELEEK--MVSLLQEK-------NDLQLQV 57
Query: 131 DIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESR 190
+ L + K LEA ++++ L + + + ELT + +E E +E +
Sbjct: 58 QAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELK 117
Query: 191 ARLADLTREEAK 202
+ DL AK
Sbjct: 118 RDIDDLELTLAK 129
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 31.3 bits (70), Expect = 0.74
Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 16/111 (14%)
Query: 2 EVLYGKYDEERTEKLTRVQLVETDLK------ALEPELRKAVNFLELENCVQRKHNEIYQ 55
V Y Y R+ KL V D P + E +++ E+ Q
Sbjct: 284 NVHYENY---RSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQ 340
Query: 56 YERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKK 106
V + E K++ E EL E +KK +E+ EL+ ++
Sbjct: 341 ----VFEMKVKEKVQKLKDSEAELQRRHEQMKK---NLEAQHKELEEKRRQ 384
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 31.1 bits (69), Expect = 1.1
Identities = 22/202 (10%), Positives = 63/202 (31%), Gaps = 17/202 (8%)
Query: 41 ELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSEL 100
L+ ++ E T ++ + L A + + ++ A
Sbjct: 456 ILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRT---VLDKAVQAD 512
Query: 101 KTVEKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEK 160
V++ + + E ++ + + + ++ + L++ L
Sbjct: 513 GQVKECYQSHR--------DTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSN 564
Query: 161 VQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRES 220
+ ER+ L +L + M S+ + A+ + E + +L R
Sbjct: 565 LDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSV----TELDRVYGGLTTK 620
Query: 221 MQTSRSNNRLIDFVMQLKSENR 242
+Q S + + ++ ++
Sbjct: 621 VQESLKKQEGL--LKNIQVSHQ 640
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 31.0 bits (69), Expect = 1.1
Identities = 19/144 (13%), Positives = 47/144 (32%), Gaps = 8/144 (5%)
Query: 87 KKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSAKTRFECDIA--------KSELE 138
C E K ++ + + + + + + + +IA + E +
Sbjct: 282 ALCMGNHELYMRRRKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQ 341
Query: 139 IFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTR 198
L +E ++ + + L E+ + + ++E+ RL +
Sbjct: 342 DRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKN 401
Query: 199 EEAKLLDQVEKLAREVSEKRESMQ 222
EA ++E R E+ +Q
Sbjct: 402 MEAAERQKLEDEIRAKQEEVSRIQ 425
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil,
alanine, axial stagger, radius, SIDE-chain packing,
crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 29.7 bits (66), Expect = 1.4
Identities = 28/148 (18%), Positives = 62/148 (41%), Gaps = 6/148 (4%)
Query: 71 KVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGK--ESNVIGSKFRWSVFSAKTRF 128
++Q +E+EL E + ++E A+ E+ K ES + + + + +
Sbjct: 4 RIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLK- 62
Query: 129 ECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAE 188
AK E + +KL +E++LE+ + + C EL + + + +
Sbjct: 63 ---EAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKS 119
Query: 189 SRARLADLTREEAKLLDQVEKLAREVSE 216
++ +L + L ++V +L + V E
Sbjct: 120 LEDKVEELLSKNYHLENEVARLKKLVGE 147
>2ilk_A Interleukin-10; cytokine; 1.60A {Homo sapiens} SCOP: a.26.1.3 PDB:
1j7v_L 1y6k_L 2h24_A 1inr_A 1ilk_A 1lk3_A 1y6n_L 1vlk_A
1y6m_L
Length = 160
Score = 28.8 bits (64), Expect = 2.6
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 1 MEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELEN---CVQRKHNEIYQYE 57
+E + + + + + V + +LK L LR+ FL EN V++ N + +
Sbjct: 73 LEEVMPQAENQDPDIKAHVNSLGENLKTLRLRLRRCHRFLPCENKSKAVEQVKNAFNKLQ 132
Query: 58 RYVNMKNLGEHETKVQQMEQELTANLES 85
K + E + + +E +T + +
Sbjct: 133 EKGIYKAMSEFDIFINYIEAYMTMKIRN 160
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament,
structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Length = 93
Score = 27.9 bits (63), Expect = 2.6
Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 166 TERKTLCEELTTRVPAM-ESEIAESRARLADLTREEAKLLDQVEKLAREVSE 216
E + L + +R+ + E E+ E R ++ LT ++A++ + + LA ++
Sbjct: 37 AELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88
>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex
component, helical bundle, membrane tethering C membrane
traffic, VPS51; HET: MSE; 2.90A {Saccharomyces
cerevisiae}
Length = 271
Score = 29.4 bits (65), Expect = 2.8
Identities = 16/100 (16%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Query: 101 KTVEKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEK 160
+ KG ++ K WS ++ +T + ++ + L + L E NL +
Sbjct: 154 FVLALKGIPWDLALWKKMWSAYNLETDDTDEGSRPDSNRDLFIFKWDKVLLGQFENNLAR 213
Query: 161 VQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREE 200
+Q K + ++L P M+ ++ + + +++
Sbjct: 214 MQDP-NWSKFVRQDLKISPPVMKRIVSTPQIQQQKEEQKK 252
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 29.4 bits (65), Expect = 3.0
Identities = 20/146 (13%), Positives = 43/146 (29%), Gaps = 9/146 (6%)
Query: 87 KKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSK 146
K+ + E+E AKS +K E +++ + + +E +
Sbjct: 39 KRASYELEFAKSTMKIAEAGKVSIQQQSHMPLQYIYTLFLEHDLSLGTLAMETVAQQKRD 98
Query: 147 ETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAM---ESEIAESRARLADLTREEAKL 203
+ LA +EK RK E+ M + ++ + + +
Sbjct: 99 YYQPLAAKRTEIEK------WRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRAR 152
Query: 204 LDQVEKLAREVSEKRESMQTSRSNNR 229
+ + + S Q R
Sbjct: 153 SQGSPEDSAPQASPGPSKQQERRRRS 178
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 29.4 bits (67), Expect = 3.5
Identities = 11/90 (12%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 127 RFECDIAKSE-LEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESE 185
+ E + ++ + ++L ++ ++ ++ L + L ER L +P + +
Sbjct: 733 KAEAGLPPAQEVRVYLEGETAPVEENLEVFRFLSRA-DLLPERPAKA--LVKAMPRVTAR 789
Query: 186 IAESRARLADLTREEAKLLDQVEKLAREVS 215
+ L D+ + ++++L
Sbjct: 790 M--PLEGLLDVEEWRRRQEKRLKELLALAE 817
Score = 28.3 bits (64), Expect = 7.2
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 148 TKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQV 207
K+L +L A E+ Q L + P + + ARL + + ++ + +
Sbjct: 806 EKRLKELLALAERSQRKLAS-----PGFREKAP--KEVVEAEEARLKENLEQAERIREAL 858
Query: 208 EKLA 211
++
Sbjct: 859 SQIG 862
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 3.8
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 7/29 (24%)
Query: 14 EKLTRVQLVETDLKALEPE----LRKAVN 38
EK ++ ++ LK + L A+
Sbjct: 18 EK-QALKKLQASLKLYADDSAPAL--AIK 43
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 28.4 bits (63), Expect = 3.9
Identities = 20/103 (19%), Positives = 35/103 (33%)
Query: 129 ECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAE 188
E K LE K A+LE L+ V L + E+ + + E EI
Sbjct: 22 EVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKV 81
Query: 189 SRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLI 231
+L + V KL + + + + + + + I
Sbjct: 82 LSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAI 124
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 29.1 bits (65), Expect = 4.6
Identities = 10/83 (12%), Positives = 32/83 (38%), Gaps = 12/83 (14%)
Query: 141 LSTQSKETKKLAD-LEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTRE 199
++ + + ++ L L+K++ T + V ++ +A+ L +
Sbjct: 1908 INEKRDQLEEEQLHLNIGLKKLRDTEAQ-----------VKDLQVSLAQKNRELDVKNEQ 1956
Query: 200 EAKLLDQVEKLAREVSEKRESMQ 222
+ L Q+ + + K++ +
Sbjct: 1957 ANQKLKQMVQDQQAAEIKQKDAR 1979
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 27.8 bits (61), Expect = 7.8
Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 18/178 (10%)
Query: 63 KNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVF 122
+ +++ Q+ EL E ++ E+E+ + + + + N
Sbjct: 17 ELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADN----------- 65
Query: 123 SAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAM 182
+ ++E + K +LE + K+ L D + ++ L + EL +
Sbjct: 66 -QRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYV---RELEQANDDL 121
Query: 183 ESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSE 240
E + L D E +L +E+ A SE E S RL D L+ E
Sbjct: 122 ERAKRATIMSLEDF---EQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE 176
Score = 27.4 bits (60), Expect = 8.6
Identities = 29/186 (15%), Positives = 69/186 (37%), Gaps = 5/186 (2%)
Query: 40 LELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSE 99
L+ E ++ + Y+ L E + +++E EL A L ++ ++++
Sbjct: 8 LKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQR 67
Query: 100 LKTVEKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLE 159
LK E + + + + + + ++ E + + DLE
Sbjct: 68 LKY-EVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 126
Query: 160 KVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRE 219
+L + + + R +ESE+ E + L +L D+ L +E++ +
Sbjct: 127 ATIMSLEDFEQRLNQAIERNAFLESELDEKES----LLVSVQRLKDEARDLRQELAVRER 182
Query: 220 SMQTSR 225
+ +R
Sbjct: 183 QQEVTR 188
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional
regulation, redox poise; HET: ATP; 2.0A {Bacillus
subtilis} PDB: 2vt2_A*
Length = 215
Score = 27.5 bits (61), Expect = 8.2
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 6/62 (9%)
Query: 338 LAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSG 397
L+ + +D + +G G GY + L + D ++ + G
Sbjct: 39 LSDAVKVDSATIRRDFSYFGALGKKGYGYNVDYLLSFFRK------TLDQDEMTDVILIG 92
Query: 398 GG 399
G
Sbjct: 93 VG 94
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.130 0.348
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,537,629
Number of extensions: 458440
Number of successful extensions: 1283
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1185
Number of HSP's successfully gapped: 137
Length of query: 531
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 433
Effective length of database: 3,965,535
Effective search space: 1717076655
Effective search space used: 1717076655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.6 bits)