RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14063
(531 letters)
>d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima
[TaxId: 2336]}
Length = 161
Score = 126 bits (319), Expect = 4e-35
Identities = 34/149 (22%), Positives = 68/149 (45%), Gaps = 3/149 (2%)
Query: 237 LKSENRVSGILGRLGDLGGIDQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVG 295
+ + R G++ + +L +D+KY +AVS G IV V+ +A++ +K+ G
Sbjct: 10 FEEKERFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAG 69
Query: 296 RVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQ 355
RV ++PLD + ++ V +DL++ + + F ++V + L+
Sbjct: 70 RVTILPLDLIDGSFNRISGLENERGFVGYAVDLVKF-PSDLEVLGGFLFGNSVVVETLDD 128
Query: 356 AKRIGYS-GGGYRMVTLEGAIIEPSETLV 383
A R+ R+ TL+G +I +
Sbjct: 129 AIRMKKKYRLNTRIATLDGELISGRGAIT 157
Score = 58.0 bits (140), Expect = 1e-10
Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 16/142 (11%)
Query: 324 RLIDLIQVQDEKIRLAFYFATRETL---VAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSE 380
+ +LI+V DEK LA T V ++++ AK I + I P +
Sbjct: 22 VVSNLIEV-DEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFL---KQNEAGRVTILPLD 77
Query: 381 TLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPS--------ETLVAQDLNQAKRIGYS-G 431
+ + G V L + ++V + L+ A R+
Sbjct: 78 LIDGSFNRISGLENERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYR 137
Query: 432 GGYRMVTLEGAIIEPSGTMSGG 453
R+ TL+G +I G ++GG
Sbjct: 138 LNTRIATLDGELISGRGAITGG 159
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS)
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 66
Score = 27.8 bits (62), Expect = 0.50
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 148 TKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQV 207
K+L +L A E+ Q L + P + + ARL + + ++ + +
Sbjct: 10 EKRLKELLALAERSQRKLAS-----PGFREKAP--KEVVEAEEARLKENLEQAERIREAL 62
Query: 208 EKLA 211
++
Sbjct: 63 SQIG 66
>d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate
synthase {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 243
Score = 27.4 bits (61), Expect = 4.1
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 271 LNYIVTETVEAGEAVIAAVKRQNVGRVNVIP 301
++Y+ + EA + V VN +P
Sbjct: 130 VSYLPVGSEEADKFYAQCAIDAGVAFVNALP 160
>d2h9da1 a.130.1.1 (A:1-94) Salicylate biosynthesis protein PchB
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 94
Score = 26.1 bits (57), Expect = 4.8
Identities = 8/67 (11%), Positives = 24/67 (35%)
Query: 180 PAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKS 239
P + +A+ R + + + + L + + S + S + R+ + +
Sbjct: 4 PEDCTGLADIREAIDRIDLDIVQALGRRMDYVKAASRFKASEAAIPAPERVAAMLPERAR 63
Query: 240 ENRVSGI 246
+G+
Sbjct: 64 WAEENGL 70
>d1vjta2 d.162.1.2 (A:192-469) Putative alpha-glucosidase TM0752
{Thermotoga maritima [TaxId: 2336]}
Length = 278
Score = 26.9 bits (59), Expect = 5.9
Identities = 17/132 (12%), Positives = 35/132 (26%), Gaps = 3/132 (2%)
Query: 4 LYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMK 63
Y DE +KL + + P F + N ++Y + K
Sbjct: 33 AYPLLDEWIEKKLPEWEPKNPWDTQMSPAAMDMYKFYGMLPIGDTVRNGSWKYHYNLETK 92
Query: 64 NLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFS 123
+ E E E +++ + + E++ K + F S
Sbjct: 93 KKWFGKFGGIDNEVERPKFHEQLRRARERLIKLAEEVQ-QNPGMKLTEEHPEIFPKGKLS 151
Query: 124 AKTRFECDIAKS 135
+ +
Sbjct: 152 GE--QHIPFINA 161
>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 215
Score = 26.7 bits (58), Expect = 6.7
Identities = 22/149 (14%), Positives = 48/149 (32%), Gaps = 14/149 (9%)
Query: 183 ESEIAESRARLADLTREE-----AKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQL 237
E E+ E R ++ + E ++ K R +S + + + + + L Q
Sbjct: 1 EKELYEKWMRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQT 60
Query: 238 KSENRVSGILGRLGDLGGIDQKYDIAVSTA---------CGALNYIVTETVEAGEAVIAA 288
S + I+ + +L ++ + Y + E E
Sbjct: 61 VSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRN 120
Query: 289 VKRQNVGRVNVIPLDKMQQYHSQCYDKYR 317
++R V V+VI D + + +
Sbjct: 121 LERAGVKNVHVILGDGSKGFPPKAPYDVI 149
>d2ilka_ a.26.1.3 (A:) Interleukin-10 (cytokine synthesis inhibitory
factor, CSIF) {Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 26.3 bits (58), Expect = 6.7
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 1 MEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELEN---CVQRKHNEIYQYE 57
+E + + + + + V + +LK L LR+ FL EN V++ N + +
Sbjct: 68 LEEVMPQAENQDPDIKAHVNSLGENLKTLRLRLRRCHRFLPCENKSKAVEQVKNAFNKLQ 127
Query: 58 RYVNMKNLGEHETKVQQMEQELTANLES 85
K + E + + +E +T + +
Sbjct: 128 EKGIYKAMSEFDIFINYIEAYMTMKIRN 155
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component
SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 129
Score = 25.9 bits (57), Expect = 7.7
Identities = 11/77 (14%), Positives = 32/77 (41%)
Query: 138 EIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLT 197
E F +T + + + + K+ +L EE ++ ++ ++ E +
Sbjct: 52 EEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAI 111
Query: 198 REEAKLLDQVEKLAREV 214
+++ KL+ V+ + +
Sbjct: 112 KKKEKLMRHVDSMIEDF 128
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.130 0.348
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,767,906
Number of extensions: 80569
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 28
Length of query: 531
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 441
Effective length of database: 1,171,896
Effective search space: 516806136
Effective search space used: 516806136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.2 bits)