BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14065
(492 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X0X|A Chain A, Co-Structure Of Homo Sapiens Glycerol-3-Phosphate
Dehydrogenase 1 Complex With Nad
Length = 354
Score = 429 bits (1102), Expect = e-120, Method: Compositional matrix adjust.
Identities = 211/312 (67%), Positives = 249/312 (79%), Gaps = 2/312 (0%)
Query: 1 MYVYEEMIDGKKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQF 60
M+V+EE I GKKLTEIIN HENVKYLPGHKLPPNVVAVPDVV+AA+DADIL+FVVPHQF
Sbjct: 43 MWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQF 102
Query: 61 IVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANLAGEV 120
I ++C QL G +K +A G+SLIKG D G + LIS +I L I M+VLMGAN+A EV
Sbjct: 103 IGKICDQLKGHLKANATGISLIKGVDEGPNG-LKLISEVIGERLGIPMSVLMGANIASEV 161
Query: 121 AEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDG 180
A+EKFCETTIGCKD G LL L+QTPNFR++VV +VD VEICGALKN+VA GAGF DG
Sbjct: 162 ADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDG 221
Query: 181 LGLGDNTKAAVIRLGLMEMVKFTELFYPG-AKSATFFESCGVADLITTCYGGRNRKVSEA 239
LG GDNTKAAVIRLGLMEM+ F +LF G SATF ESCGVADLITTCYGGRNRKV+EA
Sbjct: 222 LGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEA 281
Query: 240 FVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQ 299
F +TGKSI+ LE E+LNGQKLQGP TA E+ +L++K + +KFPLF AV+K+C
Sbjct: 282 FARTGKSIEQLEKELLNGQKLQGPETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVG 341
Query: 300 QFIDAIREHPDH 311
+FI ++ HP+H
Sbjct: 342 EFIHCLQNHPEH 353
Score = 243 bits (620), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 120/174 (68%), Positives = 142/174 (81%), Gaps = 1/174 (0%)
Query: 320 AVLISSLTSSHVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALK 379
+VL+ + +S VA+EKFCETTIGCKD G LL L+QTPNFR++VV +VD VEICGALK
Sbjct: 150 SVLMGANIASEVADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALK 209
Query: 380 NIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPG-AKSATFFESCGVADLITT 438
N+VA GAGF DGLG GDNTKAAVIRLGLMEM+ F +LF G SATF ESCGVADLITT
Sbjct: 210 NVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSSATFLESCGVADLITT 269
Query: 439 CYGGRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENK 492
CYGGRNRKV+EAF +TGKSI+ LE E+LNGQKLQGP TA E+ +L++K + +K
Sbjct: 270 CYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGPETARELYSILQHKGLVDK 323
>pdb|1WPQ|A Chain A, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1
With Nad And Dihydroxyactone
pdb|1WPQ|B Chain B, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1
With Nad And Dihydroxyactone
Length = 349
Score = 427 bits (1098), Expect = e-120, Method: Compositional matrix adjust.
Identities = 210/312 (67%), Positives = 248/312 (79%), Gaps = 2/312 (0%)
Query: 1 MYVYEEMIDGKKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQF 60
M+V+EE I GKKLTEIIN HENVKYLPGHKLPPNVVAVPDVV+AA+DADIL+FVVPHQF
Sbjct: 38 MWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQF 97
Query: 61 IVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANLAGEV 120
I ++C QL G +K + G+SLIKG D G + LIS +I L I M+VLMGAN+A EV
Sbjct: 98 IGKICDQLKGHLKANPTGISLIKGVDEGPNG-LKLISEVIGERLGIPMSVLMGANIASEV 156
Query: 121 AEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDG 180
A+EKFCETTIGCKD G LL L+QTPNFR++VV +VD VEICGALKN+VA GAGF DG
Sbjct: 157 ADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDG 216
Query: 181 LGLGDNTKAAVIRLGLMEMVKFTELFYPG-AKSATFFESCGVADLITTCYGGRNRKVSEA 239
LG GDNTKAAVIRLGLMEM+ F +LF G SATF ESCGVADLITTCYGGRNRKV+EA
Sbjct: 217 LGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEA 276
Query: 240 FVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQ 299
F +TGKSI+ LE E+LNGQKLQGP TA E+ +L++K + +KFPLF AV+K+C
Sbjct: 277 FARTGKSIEQLEKELLNGQKLQGPETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVG 336
Query: 300 QFIDAIREHPDH 311
+FI ++ HP+H
Sbjct: 337 EFIHCLQNHPEH 348
Score = 243 bits (621), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 120/174 (68%), Positives = 142/174 (81%), Gaps = 1/174 (0%)
Query: 320 AVLISSLTSSHVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALK 379
+VL+ + +S VA+EKFCETTIGCKD G LL L+QTPNFR++VV +VD VEICGALK
Sbjct: 145 SVLMGANIASEVADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALK 204
Query: 380 NIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPG-AKSATFFESCGVADLITT 438
N+VA GAGF DGLG GDNTKAAVIRLGLMEM+ F +LF G SATF ESCGVADLITT
Sbjct: 205 NVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSSATFLESCGVADLITT 264
Query: 439 CYGGRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENK 492
CYGGRNRKV+EAF +TGKSI+ LE E+LNGQKLQGP TA E+ +L++K + +K
Sbjct: 265 CYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGPETARELYSILQHKGLVDK 318
>pdb|1X0V|A Chain A, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate
Dehydrogenase 1
pdb|1X0V|B Chain B, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate
Dehydrogenase 1
Length = 354
Score = 415 bits (1067), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/311 (66%), Positives = 243/311 (78%), Gaps = 2/311 (0%)
Query: 2 YVYEEMIDGKKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFI 61
+V+EE I GKKLTEIIN HENVKYLPGHKLPPNVVAVPDVV+AA+DADIL+FVVPHQFI
Sbjct: 44 WVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFI 103
Query: 62 VRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANLAGEVA 121
++C QL G +K +A G+SLIKG D G + LIS +I L I +VL GAN+A EVA
Sbjct: 104 GKICDQLKGHLKANATGISLIKGVDEGPNG-LKLISEVIGERLGIPXSVLXGANIASEVA 162
Query: 122 EEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGL 181
+EKFCETTIGCKD G LL L QTPNFR++VV +VD VEICGALKN+VA GAGF DGL
Sbjct: 163 DEKFCETTIGCKDPAQGQLLKELXQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGL 222
Query: 182 GLGDNTKAAVIRLGLMEMVKFTELFYPG-AKSATFFESCGVADLITTCYGGRNRKVSEAF 240
G GDNTKAAVIRLGL E + F +LF G SATF ESCGVADLITTCYGGRNRKV+EAF
Sbjct: 223 GFGDNTKAAVIRLGLXEXIAFAKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAF 282
Query: 241 VKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQQ 300
+TGKSI+ LE E+LNGQKLQGP TA E+ +L++K + +KFPLF AV+K+C +
Sbjct: 283 ARTGKSIEQLEKELLNGQKLQGPETARELYSILQHKGLVDKFPLFXAVYKVCYEGQPVGE 342
Query: 301 FIDAIREHPDH 311
FI ++ HP+H
Sbjct: 343 FIHCLQNHPEH 353
Score = 236 bits (601), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 118/174 (67%), Positives = 138/174 (79%), Gaps = 1/174 (0%)
Query: 320 AVLISSLTSSHVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALK 379
+VL + +S VA+EKFCETTIGCKD G LL L QTPNFR++VV +VD VEICGALK
Sbjct: 150 SVLXGANIASEVADEKFCETTIGCKDPAQGQLLKELXQTPNFRITVVQEVDTVEICGALK 209
Query: 380 NIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPG-AKSATFFESCGVADLITT 438
N+VA GAGF DGLG GDNTKAAVIRLGL E + F +LF G SATF ESCGVADLITT
Sbjct: 210 NVVAVGAGFCDGLGFGDNTKAAVIRLGLXEXIAFAKLFCSGPVSSATFLESCGVADLITT 269
Query: 439 CYGGRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENK 492
CYGGRNRKV+EAF +TGKSI+ LE E+LNGQKLQGP TA E+ +L++K + +K
Sbjct: 270 CYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGPETARELYSILQHKGLVDK 323
>pdb|2PLA|A Chain A, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
pdb|2PLA|B Chain B, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
Length = 349
Score = 395 bits (1016), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/311 (62%), Positives = 240/311 (77%), Gaps = 2/311 (0%)
Query: 1 MYVYEEMIDGKKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQF 60
M+V+EE ++G+KLT+IIN HENVKYLPGHKLP NVVA+ ++ EA +DAD+LVFV+PHQF
Sbjct: 40 MWVFEETVNGRKLTDIINNDHENVKYLPGHKLPENVVAMSNLSEAVQDADLLVFVIPHQF 99
Query: 61 IVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANLAGEV 120
I R+C ++ G++ A+G++LIKG D G + LIS II + I ++VLMGAN+A EV
Sbjct: 100 IHRICDEITGRVPKKALGITLIKGIDEGPEG-LKLISDIIREKMGIDISVLMGANIANEV 158
Query: 121 AEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDG 180
A EKFCETTIG K G L LLQTPNFR++VVDD D VE+CGALKNIVA GAGF DG
Sbjct: 159 AAEKFCETTIGSKVMENGLLFKELLQTPNFRITVVDDADTVELCGALKNIVAVGAGFCDG 218
Query: 181 LGLGDNTKAAVIRLGLMEMVKFTELFYPGAKS-ATFFESCGVADLITTCYGGRNRKVSEA 239
L GDNTKAAVIRLGLMEM+ F +F G S ATF ESCGVADLITTCYGGRNR+V+EA
Sbjct: 219 LRCGDNTKAAVIRLGLMEMIAFARIFCKGQVSTATFLESCGVADLITTCYGGRNRRVAEA 278
Query: 240 FVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQ 299
F +TGK+I++LE EMLNGQKLQGP T+ EV +LK K + +KFPLFTAV++IC Q
Sbjct: 279 FARTGKTIEELEKEMLNGQKLQGPQTSAEVYRILKQKGLLDKFPLFTAVYQICYESRPVQ 338
Query: 300 QFIDAIREHPD 310
+ + ++ HP+
Sbjct: 339 EMLSCLQSHPE 349
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/298 (48%), Positives = 179/298 (60%), Gaps = 38/298 (12%)
Query: 231 GRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADE--VNYMLKNKNMENKFPLFTA- 287
G N K + F T K + +E +NG+KL D V Y+ +K EN +
Sbjct: 25 GNNVKKLQKFASTVKMW--VFEETVNGRKLTDIINNDHENVKYLPGHKLPENVVAMSNLS 82
Query: 288 -----------------VHKIC--IGEMKPQQ-----FIDAIREHPD--HKVSTAQKE-- 319
+H+IC I P++ I I E P+ +S +E
Sbjct: 83 EAVQDADLLVFVIPHQFIHRICDEITGRVPKKALGITLIKGIDEGPEGLKLISDIIREKM 142
Query: 320 ----AVLISSLTSSHVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEIC 375
+VL+ + ++ VA EKFCETTIG K G L LLQTPNFR++VVDD D VE+C
Sbjct: 143 GIDISVLMGANIANEVAAEKFCETTIGSKVMENGLLFKELLQTPNFRITVVDDADTVELC 202
Query: 376 GALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKS-ATFFESCGVAD 434
GALKNIVA GAGF DGL GDNTKAAVIRLGLMEM+ F +F G S ATF ESCGVAD
Sbjct: 203 GALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAFARIFCKGQVSTATFLESCGVAD 262
Query: 435 LITTCYGGRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENK 492
LITTCYGGRNR+V+EAF +TGK+I++LE EMLNGQKLQGP T+ EV +LK K + +K
Sbjct: 263 LITTCYGGRNRRVAEAFARTGKTIEELEKEMLNGQKLQGPQTSAEVYRILKQKGLLDK 320
>pdb|4FGW|A Chain A, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1,
From Sacharomyces Cerevisiae
pdb|4FGW|B Chain B, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1,
From Sacharomyces Cerevisiae
Length = 391
Score = 282 bits (721), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 148/322 (45%), Positives = 202/322 (62%), Gaps = 11/322 (3%)
Query: 1 MYVYEEMIDGKKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQF 60
M+V+EE I+G+KLTEIIN H+NVKYLPG LP N+VA PD++++ KD DI+VF +PHQF
Sbjct: 70 MWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSVKDVDIIVFNIPHQF 129
Query: 61 IVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANLAGEV 120
+ R+CSQL G + +S +KGF+ G+ L+S IT L I+ L GAN+A EV
Sbjct: 130 LPRICSQLKGHVDSHVRAISCLKGFEVG-AKGVQLLSSYITEELGIQCGALSGANIATEV 188
Query: 121 AEEKFCETTI---------GCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIV 171
A+E + ETT+ G +L AL P F VSV++DV + ICGALKN+V
Sbjct: 189 AQEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGALKNVV 248
Query: 172 ACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFF-ESCGVADLITTCYG 230
A G GFV+GLG G+N AA+ R+GL E+++F ++F+P ++ T++ ES GVADLITTC G
Sbjct: 249 ALGCGFVEGLGWGNNASAAIQRVGLGEIIRFGQMFFPESREETYYQESAGVADLITTCAG 308
Query: 231 GRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHK 290
GRN KV+ +GK + E E+LNGQ QG T EV+ L+ FPLF AV++
Sbjct: 309 GRNVKVARLMATSGKDAWECEKELLNGQSAQGLITCKEVHEWLETCGSVEDFPLFEAVYQ 368
Query: 291 ICIGEMKPQQFIDAIREHPDHK 312
I + D I E H+
Sbjct: 369 IVYNNYPMKNLPDMIEELDLHE 390
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 106/168 (63%), Gaps = 10/168 (5%)
Query: 328 SSHVAEEKFCETTI---------GCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGAL 378
++ VA+E + ETT+ G +L AL P F VSV++DV + ICGAL
Sbjct: 185 ATEVAQEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGAL 244
Query: 379 KNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFF-ESCGVADLIT 437
KN+VA G GFV+GLG G+N AA+ R+GL E+++F ++F+P ++ T++ ES GVADLIT
Sbjct: 245 KNVVALGCGFVEGLGWGNNASAAIQRVGLGEIIRFGQMFFPESREETYYQESAGVADLIT 304
Query: 438 TCYGGRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLK 485
TC GGRN KV+ +GK + E E+LNGQ QG T EV+ L+
Sbjct: 305 TCAGGRNVKVARLMATSGKDAWECEKELLNGQSAQGLITCKEVHEWLE 352
>pdb|1YJ8|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
pdb|1YJ8|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
pdb|1YJ8|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
Length = 375
Score = 237 bits (605), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 127/308 (41%), Positives = 184/308 (59%), Gaps = 7/308 (2%)
Query: 1 MYVYEEMIDGKKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQF 60
M++ +E ++G+++ +IIN HEN KYL G LP N+VA D+ DAD+L+F+VP Q+
Sbjct: 56 MWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVINDADLLIFIVPCQY 115
Query: 61 IVRLCSQLLG----KIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANL 116
+ + + + KI A +SL KGF + + L S+ I+ L I + L GAN+
Sbjct: 116 LESVLASIKESESIKIASHAKAISLTKGF-IVKKNQMKLCSNYISDFLNIPCSALSGANI 174
Query: 117 AGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAG 176
A +VA E F E TIG DK + + P F+++ V++ VEICGALKNI+ G
Sbjct: 175 AMDVAMENFSEATIGGNDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACG 234
Query: 177 FVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKV 236
F DGL L N+K+A+IR G+ EM+ F ++F+ ESCG AD+IT+ GRN K
Sbjct: 235 FCDGLNLPTNSKSAIIRNGINEMILFGKVFFQKFNENILLESCGFADIITSFLAGRNAKC 294
Query: 237 SEAFVKTG--KSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIG 294
S F+K+ K+ ++LE+E+L GQKLQG T V +M+K KNM N+FPLFT +HKI
Sbjct: 295 SAEFIKSTPKKTWEELENEILKGQKLQGTVTLKYVYHMIKEKNMTNEFPLFTVLHKISFE 354
Query: 295 EMKPQQFI 302
P +
Sbjct: 355 NEDPSSLL 362
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 101/164 (61%), Gaps = 2/164 (1%)
Query: 331 VAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVD 390
VA E F E TIG DK + + P F+++ V++ VEICGALKNI+ GF D
Sbjct: 178 VAMENFSEATIGGNDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCD 237
Query: 391 GLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKVSEA 450
GL L N+K+A+IR G+ EM+ F ++F+ ESCG AD+IT+ GRN K S
Sbjct: 238 GLNLPTNSKSAIIRNGINEMILFGKVFFQKFNENILLESCGFADIITSFLAGRNAKCSAE 297
Query: 451 FVKTG--KSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENK 492
F+K+ K+ ++LE+E+L GQKLQG T V +M+K KNM N+
Sbjct: 298 FIKSTPKKTWEELENEILKGQKLQGTVTLKYVYHMIKEKNMTNE 341
>pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
pdb|3K96|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
Length = 356
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 136/293 (46%), Gaps = 22/293 (7%)
Query: 23 NVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVP----HQFIVRLCSQLLGKIKPDAVG 78
N +YLP + P + A D+ + + ++ VVP H+ I R+ KP
Sbjct: 74 NNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVPSFAFHEVITRM--------KPLIDA 125
Query: 79 LSLIKGFDRAEGGGIDLISHIITRNL-KIKMTVLMGANLAGEVAEEKFCETTIGCKDKTL 137
+ I + G L+ ++ L ++ M V+ G +LA EVA ++ +
Sbjct: 126 KTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLASNNSQF 185
Query: 138 GPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLM 197
L L FRV DD+ VE+CG++KNI+A G DGL LG N +AA+I GL
Sbjct: 186 SKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLT 245
Query: 198 EMVKFTELFYPGAKSATFFESCGVADLITTCYG--GRNRKVSEAFVKTGKSIKDLEDEML 255
EM + +F G K T G+ DL+ TC RNR+ A G+ + E +
Sbjct: 246 EMGRLVSVF--GGKQETLTGLAGLGDLVLTCTDNQSRNRRFGLAL---GEGVDKKEAQQA 300
Query: 256 NGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQQFIDAIREH 308
GQ ++G + D+V+ + + +E PL VH+I ++ PQQ + + E
Sbjct: 301 IGQAIEGLYNTDQVHALAQKHAIE--MPLTFQVHRILHEDLDPQQAVQELLER 351
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 72/137 (52%), Gaps = 7/137 (5%)
Query: 356 LQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTE 415
L FRV DD+ VE+CG++KNI+A G DGL LG N +AA+I GL EM +
Sbjct: 193 LHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVS 252
Query: 416 LFYPGAKSATFFESCGVADLITTCYG--GRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQG 473
+F G K T G+ DL+ TC RNR+ A G+ + E + GQ ++G
Sbjct: 253 VF--GGKQETLTGLAGLGDLVLTCTDNQSRNRRFGLAL---GEGVDKKEAQQAIGQAIEG 307
Query: 474 PFTADEVNYMLKNKNME 490
+ D+V+ + + +E
Sbjct: 308 LYNTDQVHALAQKHAIE 324
>pdb|1Z82|A Chain A, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
(Tm0378) From Thermotoga Maritima At 2.00 A Resolution
pdb|1Z82|B Chain B, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
(Tm0378) From Thermotoga Maritima At 2.00 A Resolution
Length = 335
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 141/292 (48%), Gaps = 22/292 (7%)
Query: 11 KKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLG 70
K++ ++IN +H + Y+ K+ V A D+ E K+ DILV +P Q+I +L
Sbjct: 47 KEIVDLINVSHTS-PYVEESKI--TVRATNDLEEIKKE-DILVIAIPVQYIREHLLRL-- 100
Query: 71 KIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANLAGEVAEEKFCETTI 130
+KP V L+L KG + G +S I+ L VL G + A EVA++ T+
Sbjct: 101 PVKPSXV-LNLSKGIEIKTG---KRVSEIVEEILGCPYAVLSGPSHAEEVAKKLPTAVTL 156
Query: 131 GCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAA 190
++ L + T FRV +DV VEI GALKN++A AG +DG G DN KAA
Sbjct: 157 AGENSKE---LQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAA 213
Query: 191 VIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYG--GRNRKVSEAFVKTGKSIK 248
+ G+ E+ +F F GA TF G+ DL TC RNR+ E + +K
Sbjct: 214 LETRGIYEIARFGXFF--GADQKTFXGLAGIGDLXVTCNSRYSRNRRFGELIARGFNPLK 271
Query: 249 DLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQQ 300
LE + Q ++G FT V + K ++ P+ V+++ P Q
Sbjct: 272 LLES---SNQVVEGAFTVKAVXKIAKENKIDX--PISEEVYRVVYEGKPPLQ 318
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 71/141 (50%), Gaps = 7/141 (4%)
Query: 352 LHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMV 411
L + T FRV +DV VEI GALKN++A AG +DG G DN KAA+ G+ E+
Sbjct: 164 LQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIA 223
Query: 412 KFTELFYPGAKSATFFESCGVADLITTCYG--GRNRKVSEAFVKTGKSIKDLEDEMLNGQ 469
+F F GA TF G+ DL TC RNR+ E + +K LE + Q
Sbjct: 224 RFGXFF--GADQKTFXGLAGIGDLXVTCNSRYSRNRRFGELIARGFNPLKLLES---SNQ 278
Query: 470 KLQGPFTADEVNYMLKNKNME 490
++G FT V + K ++
Sbjct: 279 VVEGAFTVKAVXKIAKENKID 299
>pdb|1EVY|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-phosphate Dehydrogenase
pdb|1EVZ|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-Phosphate Dehydrogenase In Complex With Nad
pdb|1JDJ|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-Phosphate Dehydrogenase In Complex With
2-Fluoro-6-Chloropurine
pdb|1M66|A Chain A, Crystal Structure Of Leishmania Mexicana Gpdh Complexed
With Inhibitor 2-Bromo-6-Chloro-Purine
pdb|1M67|A Chain A, Crystal Structure Of Leishmania Mexicana Gpdh Complexed
With Inhibitor 2-Bromo-6-Hydroxy-Purine
pdb|1N1E|A Chain A, Crystal Structure Of Leishmania Mexicana Glycerol-3-
Phosphate Dehydrogenase Complexed With Dhap And Nad
pdb|1N1E|B Chain B, Crystal Structure Of Leishmania Mexicana Glycerol-3-
Phosphate Dehydrogenase Complexed With Dhap And Nad
pdb|1N1G|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-Phosphate Dehydrogenase With Inhibitor Bcp
Length = 366
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 138/295 (46%), Gaps = 20/295 (6%)
Query: 15 EIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIV----RLCSQLLG 70
++NE ENV +L G +L N+ DV +A A+I++FV+P QF+ + L+
Sbjct: 52 RLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIA 111
Query: 71 KIKPDAVG-LSLIKGFDRAEGGGIDLISHIITRNLKIKM-TVLMGANLAGEVAEEKFCET 128
K V L KG +R+ + + II L + +VL G + A EVA F
Sbjct: 112 YAKEKQVPVLVCTKGIERST---LKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCV 168
Query: 129 TIGCKDKTLGPLLHALLQT--PNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDN 186
+I D + L ++ T +F D E+ A+KN++A G+G +GLG+G N
Sbjct: 169 SIASADINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLN 228
Query: 187 TKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYG--GRNRKVSEAFVKTG 244
+AA+I GL+E+ T G + F G+ DL TC RN V + K G
Sbjct: 229 ARAALIMRGLLEIRDLTAAL--GGDGSAVFGLAGLGDLQLTCSSELSRNFTVGK---KLG 283
Query: 245 KSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQ 299
K + E + + +G TAD + M K ++ K PL +++I + P+
Sbjct: 284 KGLPIEEIQRTSKAVAEGVATADPL--MRLAKQLKVKMPLCHQIYEIVYKKKNPR 336
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 9/161 (5%)
Query: 330 HVAEEKFCETTIGCKDKTLGPLLHALLQT--PNFRVSVVDDVDAVEICGALKNIVACGAG 387
VA F +I D + L ++ T +F D E+ A+KN++A G+G
Sbjct: 159 EVATGVFTCVSIASADINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSG 218
Query: 388 FVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYG--GRNR 445
+GLG+G N +AA+I GL+E+ T G + F G+ DL TC RN
Sbjct: 219 VANGLGMGLNARAALIMRGLLEIRDLTAAL--GGDGSAVFGLAGLGDLQLTCSSELSRNF 276
Query: 446 KVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKN 486
V + K GK + E + + +G TAD + + K
Sbjct: 277 TVGK---KLGKGLPIEEIQRTSKAVAEGVATADPLMRLAKQ 314
>pdb|1TXG|A Chain A, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
pdb|1TXG|B Chain B, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
Length = 335
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 12/207 (5%)
Query: 103 NLKIKMTVLMGANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVE 162
+L+ + + G +A EVA+ ++ + + +T F V V D+ E
Sbjct: 127 DLRERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGVEVTTDIIGTE 186
Query: 163 ICGALKNIVACGAGFVDGLGLG-----DNTKAAVIRLGLMEMVKFTELFYPGAKSATFFE 217
I ALKN+ + ++ G N K + + EM + E+ G T F
Sbjct: 187 ITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEIL--GGDRETAFG 244
Query: 218 SCGVADLITTCYGGRNRKVSEAFVKTGKSIKDLEDEM-LNGQKLQGPFTADEVNYMLKNK 276
G DLI T GGRN + E K G SI + +E+ G + + E Y L +K
Sbjct: 245 LSGFGDLIATFRGGRNGMLGELLGK-GLSIDEAMEELERRGVGVVEGYKTAEKAYRLSSK 303
Query: 277 -NMENKFPLFTAVHKICIGEMKPQQFI 302
N + K L +++++ +K ++ +
Sbjct: 304 INADTK--LLDSIYRVLYEGLKVEEVL 328
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 352 LHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLG-----DNTKAAVIRLG 406
+ + +T F V V D+ EI ALKN+ + ++ G N K +
Sbjct: 165 MKEIFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRA 224
Query: 407 LMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKVSEAFVKTGKSIKDLEDEM 465
+ EM + E+ G T F G DLI T GGRN + E K G SI + +E+
Sbjct: 225 INEMAELIEIL--GGDRETAFGLSGFGDLIATFRGGRNGMLGELLGK-GLSIDEAMEEL 280
>pdb|3ZDJ|A Chain A, Ancestral (enca) Beta-lactamase Class A
pdb|3ZDJ|B Chain B, Ancestral (enca) Beta-lactamase Class A
Length = 263
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 279 ENKFPLFTAVHKICIGEMKPQQFIDAIREHPDHKVSTAQKEAVLISSLTSSHVAE----E 334
+ +FP+ + + G + + +DA E D ++ Q++ V S +T H+A+
Sbjct: 38 DERFPMMSTFKVLLCGAVLAR--VDAGLEQLDRRIHYRQQDLVEYSPVTEKHLADGMTVA 95
Query: 335 KFCETTIGCKDKTLGPLLHALLQTP 359
+ C I D T LL A + P
Sbjct: 96 ELCAAAITMSDNTAANLLLATIGGP 120
>pdb|3N73|A Chain A, Crystal Structure Of A Putative 4-Hydroxy-2-Oxoglutarate
Ald Bacillus Cereus
pdb|3N73|B Chain B, Crystal Structure Of A Putative 4-Hydroxy-2-Oxoglutarate
Ald Bacillus Cereus
Length = 251
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 180 GLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKVSEA 239
GLG GDN +AAV+ E+ K YPG+ F S G GG++ ++
Sbjct: 69 GLGAGDNRQAAVV----AEIAK----HYPGSHINQVFPSVGAT---RANLGGKDSWINSL 117
Query: 240 FVKTGK 245
TGK
Sbjct: 118 VSPTGK 123
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 391 GLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKVSEA 450
GLG GDN +AAV+ E+ K YPG+ F S G GG++ ++
Sbjct: 69 GLGAGDNRQAAVV----AEIAK----HYPGSHINQVFPSVGAT---RANLGGKDSWINSL 117
Query: 451 FVKTGK 456
TGK
Sbjct: 118 VSPTGK 123
>pdb|2AQ4|A Chain A, Ternary Complex Of The Catalytic Core Of Rev1 With Dna And
Dctp.
pdb|3BJY|A Chain A, Catalytic Core Of Rev1 In Complex With Dna (Modified
Template Guanine) And Incoming Nucleotide
pdb|3OSP|A Chain A, Structure Of Rev1
Length = 434
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 20/160 (12%)
Query: 213 ATFFESCGVA-DLITTCYGGRNRKVSEAF-------VKTGKSIKDLEDEMLNGQKLQG-P 263
++ F +C D I C+G +N ++ +K G + E + NG KL P
Sbjct: 72 SSSFSACDFKRDPIVVCHGTKNSDIASCNYVARSYGIKNGMWVSQAEKMLPNGIKLISLP 131
Query: 264 FTADEVNYMLKNKNMEN---KFPLFTAVHKICIGEMKPQQFIDAIREHPDHKVSTAQKEA 320
+T ++ + LK++ + + +F + I I E +R PD+ +T A
Sbjct: 132 YTFEQ--FQLKSEAFYSTLKRLNIFNLILPISIDEAV------CVRIIPDNIHNTNTLNA 183
Query: 321 VLISSLTSSHVAEEKFCETTIGCKDKTLGPLLHALLQTPN 360
L + C +IGC D + L + PN
Sbjct: 184 RLCEEIRQEIFQGTNGCTVSIGCSDSLVLARLALKMAKPN 223
>pdb|3ZZM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Purh With
A Novel Bound Nucleotide Cfair, At 2.2 A Resolution.
pdb|3ZZM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Purh With
A Novel Bound Nucleotide Cfair, At 2.2 A Resolution.
pdb|4A1O|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Purh
Complexed With Aicar And A Novel Nucleotide Cfair, At
2.48 A Resolution.
pdb|4A1O|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Purh
Complexed With Aicar And A Novel Nucleotide Cfair, At
2.48 A Resolution
Length = 523
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 147 TPNFRVSVVDDVDAVEICGALKN--IVACGAGFVDGLGLG-----DNTKAAVIRLG--LM 197
+P ++ D V A C A+K+ IV G G+G+G D + AV R G +
Sbjct: 404 SPADPATLTDLVFAWRACRAVKSNAIVIAADGATVGVGMGQVNRVDAARLAVERGGERVR 463
Query: 198 EMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKVSEAFVKTGKSI 247
V ++ F+P + GV ++ R+ +V+EA K G ++
Sbjct: 464 GAVAASDAFFPFPDGLETLAAAGVTAVVHPGGSVRDEEVTEAAAKAGVTL 513
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 358 TPNFRVSVVDDVDAVEICGALKN--IVACGAGFVDGLGLG-----DNTKAAVIRLG--LM 408
+P ++ D V A C A+K+ IV G G+G+G D + AV R G +
Sbjct: 404 SPADPATLTDLVFAWRACRAVKSNAIVIAADGATVGVGMGQVNRVDAARLAVERGGERVR 463
Query: 409 EMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKVSEAFVKTGKSI 458
V ++ F+P + GV ++ R+ +V+EA K G ++
Sbjct: 464 GAVAASDAFFPFPDGLETLAAAGVTAVVHPGGSVRDEEVTEAAAKAGVTL 513
>pdb|1WHR|A Chain A, Solution Structure Of The R3h Domain From Human
Hypothetical Protein Baa76846
Length = 124
Score = 28.9 bits (63), Expect = 6.3, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 269 VNYMLKNKNMENKFPLFTAVHKICIGEMKPQQFIDAIREHPDHKVSTAQKEAVLISSLTS 328
+ ++ N N KFP T+ H++ + + A DH V K AV+I+ ++
Sbjct: 41 LEFINDNNNQFKKFPQMTSYHRMLLHRV-------AAYFGMDHNVDQTGK-AVIINKTSN 92
Query: 329 SHVAEEKFCE 338
+ + E++F E
Sbjct: 93 TRIPEQRFSE 102
>pdb|1MV4|A Chain A, Tm9a251-284: A Peptide Model Of The C-Terminus Of A Rat
Striated Alpha Tropomyosin
pdb|1MV4|B Chain B, Tm9a251-284: A Peptide Model Of The C-Terminus Of A Rat
Striated Alpha Tropomyosin
pdb|2G9J|C Chain C, Complex Of Tm1a(1-14)zip With Tm9a(251-284): A Model For
The Polymerization Domain ("overlap Region") Of
Tropomyosin, Northeast Structural Genomics Target Or9
pdb|2G9J|D Chain D, Complex Of Tm1a(1-14)zip With Tm9a(251-284): A Model For
The Polymerization Domain ("overlap Region") Of
Tropomyosin, Northeast Structural Genomics Target Or9
Length = 37
Score = 28.9 bits (63), Expect = 6.6, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 244 GKSIKDLEDEMLNGQKLQGPFTADEVNYMLKN 275
GKSI DLEDE L QKL+ ++E+++ LK+
Sbjct: 3 GKSIDDLEDE-LYAQKLKYKAISEELDHALKD 33
Score = 28.9 bits (63), Expect = 6.6, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 455 GKSIKDLEDEMLNGQKLQGPFTADEVNYMLKN 486
GKSI DLEDE L QKL+ ++E+++ LK+
Sbjct: 3 GKSIDDLEDE-LYAQKLKYKAISEELDHALKD 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,147,384
Number of Sequences: 62578
Number of extensions: 573386
Number of successful extensions: 1472
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1421
Number of HSP's gapped (non-prelim): 35
length of query: 492
length of database: 14,973,337
effective HSP length: 103
effective length of query: 389
effective length of database: 8,527,803
effective search space: 3317315367
effective search space used: 3317315367
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)