Query psy14065
Match_columns 492
No_of_seqs 271 out of 2303
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 18:40:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0240 GpsA Glycerol-3-phosph 100.0 3.9E-83 8.5E-88 639.9 29.7 295 1-310 29-326 (329)
2 PTZ00345 glycerol-3-phosphate 100.0 4.6E-80 9.9E-85 636.7 33.6 309 1-310 46-358 (365)
3 TIGR03376 glycerol3P_DH glycer 100.0 9.9E-79 2.2E-83 622.8 32.6 302 1-305 35-342 (342)
4 KOG2711|consensus 100.0 4.1E-73 8.9E-78 560.4 29.4 311 1-311 56-370 (372)
5 PRK12439 NAD(P)H-dependent gly 100.0 1.3E-65 2.9E-70 528.5 32.5 295 1-310 34-332 (341)
6 COG0240 GpsA Glycerol-3-phosph 100.0 3.1E-53 6.7E-58 424.6 18.8 200 278-490 95-297 (329)
7 PRK14620 NAD(P)H-dependent gly 100.0 3.8E-51 8.2E-56 418.6 31.6 292 1-307 28-326 (326)
8 PTZ00345 glycerol-3-phosphate 100.0 1.9E-51 4.1E-56 424.2 18.8 201 281-490 122-327 (365)
9 TIGR03376 glycerol3P_DH glycer 100.0 3.5E-51 7.5E-56 419.5 19.0 202 280-492 108-318 (342)
10 KOG2711|consensus 100.0 2E-47 4.3E-52 378.0 15.3 173 320-492 167-340 (372)
11 PRK14618 NAD(P)H-dependent gly 100.0 2.2E-44 4.8E-49 369.0 31.3 292 1-310 32-325 (328)
12 PRK14619 NAD(P)H-dependent gly 100.0 5.9E-44 1.3E-48 363.0 29.2 261 40-310 39-303 (308)
13 PRK12439 NAD(P)H-dependent gly 100.0 6.4E-42 1.4E-46 352.7 18.9 197 281-490 104-303 (341)
14 PF07479 NAD_Gly3P_dh_C: NAD-d 100.0 3.6E-42 7.8E-47 313.1 10.2 145 156-305 1-149 (149)
15 PRK00094 gpsA NAD(P)H-dependen 100.0 3.5E-38 7.5E-43 321.6 31.8 292 2-308 30-325 (325)
16 PF07479 NAD_Gly3P_dh_C: NAD-d 100.0 2.7E-37 5.8E-42 281.2 8.0 121 367-490 1-125 (149)
17 PRK14620 NAD(P)H-dependent gly 100.0 3.9E-31 8.5E-36 270.8 18.2 197 281-490 99-300 (326)
18 PRK14619 NAD(P)H-dependent gly 100.0 2.1E-29 4.5E-34 256.3 19.8 168 318-490 105-274 (308)
19 PF01210 NAD_Gly3P_dh_N: NAD-d 99.9 2.8E-27 6E-32 217.9 10.2 129 1-137 27-156 (157)
20 PRK14618 NAD(P)H-dependent gly 99.9 3E-26 6.6E-31 234.9 16.8 166 319-490 129-296 (328)
21 COG1004 Ugd Predicted UDP-gluc 99.9 1.9E-21 4E-26 198.3 16.8 250 10-308 32-305 (414)
22 PRK00094 gpsA NAD(P)H-dependen 99.8 3.3E-20 7.1E-25 189.3 15.7 167 319-490 130-298 (325)
23 TIGR03026 NDP-sugDHase nucleot 99.6 1.7E-15 3.8E-20 160.1 12.7 246 11-306 33-305 (411)
24 PLN02353 probable UDP-glucose 99.5 4E-14 8.8E-19 151.6 14.3 250 10-306 35-315 (473)
25 PRK06522 2-dehydropantoate 2-r 99.4 6.5E-12 1.4E-16 126.8 16.6 243 13-293 35-295 (304)
26 PRK07634 pyrroline-5-carboxyla 99.4 1.7E-12 3.8E-17 127.4 10.5 162 23-216 41-203 (245)
27 PRK15057 UDP-glucose 6-dehydro 99.4 2.8E-12 6E-17 134.6 12.2 240 10-307 31-293 (388)
28 KOG2666|consensus 99.3 8.3E-12 1.8E-16 123.5 9.2 295 13-361 38-381 (481)
29 PRK08229 2-dehydropantoate 2-r 99.2 2.8E-10 6E-15 117.3 18.4 185 14-216 37-237 (341)
30 TIGR00745 apbA_panE 2-dehydrop 99.2 6.2E-10 1.3E-14 111.7 16.4 244 13-293 25-288 (293)
31 PRK12491 pyrroline-5-carboxyla 99.2 3.1E-10 6.7E-15 113.8 13.7 206 35-291 50-259 (272)
32 COG0345 ProC Pyrroline-5-carbo 99.1 5.5E-10 1.2E-14 110.9 13.9 184 38-264 52-238 (266)
33 PRK12921 2-dehydropantoate 2-r 99.1 1.6E-09 3.4E-14 109.7 16.5 228 37-293 57-298 (305)
34 PRK15182 Vi polysaccharide bio 99.1 3.9E-10 8.4E-15 119.9 12.4 242 11-306 38-302 (425)
35 TIGR00112 proC pyrroline-5-car 99.1 1.1E-09 2.3E-14 108.2 13.4 205 35-290 30-238 (245)
36 PRK11064 wecC UDP-N-acetyl-D-m 99.1 1.3E-09 2.9E-14 115.5 13.7 236 11-305 36-303 (415)
37 PRK06928 pyrroline-5-carboxyla 99.0 2.7E-09 5.8E-14 107.3 11.5 111 36-157 52-163 (277)
38 PRK07679 pyrroline-5-carboxyla 98.9 1.1E-08 2.4E-13 102.8 13.0 160 26-217 43-204 (279)
39 PTZ00431 pyrroline carboxylate 98.9 2.3E-08 5E-13 99.6 13.7 195 36-278 45-241 (260)
40 TIGR01692 HIBADH 3-hydroxyisob 98.9 6.6E-08 1.4E-12 97.6 16.1 214 36-292 40-267 (288)
41 TIGR01505 tartro_sem_red 2-hyd 98.7 1.5E-07 3.2E-12 95.1 13.8 226 38-306 45-284 (291)
42 PRK12557 H(2)-dependent methyl 98.7 7.3E-08 1.6E-12 99.7 9.2 156 34-217 67-234 (342)
43 PRK11880 pyrroline-5-carboxyla 98.6 7.1E-07 1.5E-11 88.8 15.3 206 35-291 49-257 (267)
44 PRK07680 late competence prote 98.6 1.2E-06 2.6E-11 87.8 16.5 115 35-161 49-164 (273)
45 TIGR01915 npdG NADPH-dependent 98.6 4E-07 8.6E-12 88.4 12.1 112 41-153 61-185 (219)
46 PLN02688 pyrroline-5-carboxyla 98.6 1.6E-06 3.4E-11 86.4 16.0 209 35-292 48-257 (266)
47 PRK11559 garR tartronate semia 98.6 2.2E-06 4.9E-11 86.6 16.4 227 36-306 46-287 (296)
48 PRK06476 pyrroline-5-carboxyla 98.4 2.4E-06 5.2E-11 84.8 13.2 199 35-291 48-249 (258)
49 PF03721 UDPG_MGDP_dh_N: UDP-g 98.4 7.1E-07 1.5E-11 84.6 8.7 130 10-144 32-185 (185)
50 PRK15461 NADH-dependent gamma- 98.4 7.5E-06 1.6E-10 83.1 15.0 224 36-305 45-286 (296)
51 COG0677 WecC UDP-N-acetyl-D-ma 98.4 5.2E-06 1.1E-10 85.7 13.5 229 11-292 42-298 (436)
52 TIGR00465 ilvC ketol-acid redu 98.3 4.3E-06 9.4E-11 85.6 12.4 126 35-172 47-194 (314)
53 PRK06249 2-dehydropantoate 2-r 98.2 4.3E-05 9.3E-10 78.1 16.0 223 36-293 61-306 (313)
54 PRK05479 ketol-acid reductoiso 98.1 6.2E-05 1.4E-09 77.4 14.6 157 35-206 61-239 (330)
55 PRK05708 2-dehydropantoate 2-r 98.0 0.00016 3.4E-09 73.8 14.9 207 46-293 68-294 (305)
56 PRK15059 tartronate semialdehy 97.9 0.00012 2.6E-09 74.3 12.7 215 35-292 42-263 (292)
57 PRK06130 3-hydroxybutyryl-CoA 97.9 7.9E-05 1.7E-09 75.9 11.1 144 34-217 65-214 (311)
58 COG1893 ApbA Ketopantoate redu 97.9 0.00046 9.9E-09 70.6 15.9 241 14-293 35-297 (307)
59 KOG3124|consensus 97.9 5.1E-05 1.1E-09 74.3 8.3 116 34-160 47-164 (267)
60 PRK07531 bifunctional 3-hydrox 97.8 8.6E-05 1.9E-09 80.8 10.8 153 25-217 55-215 (495)
61 TIGR00872 gnd_rel 6-phosphoglu 97.8 0.00069 1.5E-08 68.9 15.4 223 41-306 52-287 (298)
62 PTZ00142 6-phosphogluconate de 97.7 0.00015 3.2E-09 78.3 10.6 181 2-217 30-216 (470)
63 COG2084 MmsB 3-hydroxyisobutyr 97.7 0.00091 2E-08 67.4 14.3 215 35-292 44-265 (286)
64 PLN02858 fructose-bisphosphate 97.7 0.0014 3E-08 79.2 18.0 230 36-306 368-612 (1378)
65 PRK08655 prephenate dehydrogen 97.7 0.00074 1.6E-08 72.4 14.2 167 35-213 45-222 (437)
66 PF01210 NAD_Gly3P_dh_N: NAD-d 97.6 2.9E-05 6.3E-10 71.4 2.1 74 266-348 82-156 (157)
67 PF03807 F420_oxidored: NADP o 97.5 8.2E-05 1.8E-09 62.1 3.4 48 36-84 48-96 (96)
68 PLN02256 arogenate dehydrogena 97.5 0.00088 1.9E-08 68.4 11.4 160 36-213 79-256 (304)
69 PRK12490 6-phosphogluconate de 97.5 0.0007 1.5E-08 68.8 10.4 223 36-306 44-288 (299)
70 PRK08293 3-hydroxybutyryl-CoA 97.5 0.00041 8.9E-09 70.0 8.4 140 34-216 70-218 (287)
71 PRK06035 3-hydroxyacyl-CoA deh 97.4 0.00066 1.4E-08 68.7 9.6 145 33-217 71-219 (291)
72 PRK05808 3-hydroxybutyryl-CoA 97.4 0.0009 2E-08 67.3 10.2 143 34-216 69-215 (282)
73 PRK09599 6-phosphogluconate de 97.4 0.0034 7.5E-08 63.8 14.5 228 35-306 43-289 (301)
74 PRK08507 prephenate dehydrogen 97.3 0.0015 3.3E-08 65.4 10.6 109 39-158 50-169 (275)
75 PRK06129 3-hydroxyacyl-CoA deh 97.1 0.0044 9.6E-08 63.2 11.5 146 32-217 66-217 (308)
76 PRK06545 prephenate dehydrogen 97.1 0.0015 3.3E-08 68.2 8.1 110 38-155 50-172 (359)
77 PF00984 UDPG_MGDP_dh: UDP-glu 97.0 0.00021 4.5E-09 60.5 0.4 86 182-292 8-93 (96)
78 PLN02858 fructose-bisphosphate 96.9 0.026 5.7E-07 68.5 16.9 217 35-292 47-271 (1378)
79 PRK14806 bifunctional cyclohex 96.8 0.005 1.1E-07 70.2 9.7 109 38-155 53-175 (735)
80 PLN02545 3-hydroxybutyryl-CoA 96.7 0.013 2.9E-07 59.3 11.3 141 35-215 71-215 (295)
81 TIGR00873 gnd 6-phosphoglucona 96.6 0.0079 1.7E-07 65.0 9.2 160 36-217 48-213 (467)
82 COG2085 Predicted dinucleotide 96.6 0.0084 1.8E-07 57.6 8.2 113 40-153 52-176 (211)
83 PF03446 NAD_binding_2: NAD bi 96.6 0.0099 2.1E-07 54.9 8.3 105 35-147 44-152 (163)
84 PRK07530 3-hydroxybutyryl-CoA 96.4 0.038 8.1E-07 55.9 12.4 110 34-159 70-186 (292)
85 PRK09260 3-hydroxybutyryl-CoA 96.3 0.015 3.2E-07 58.7 8.6 140 33-216 66-214 (288)
86 PRK07502 cyclohexadienyl dehyd 96.2 0.028 6.1E-07 57.2 10.3 110 38-155 56-177 (307)
87 PF02153 PDH: Prephenate dehyd 96.2 0.021 4.5E-07 56.9 9.0 113 39-161 37-161 (258)
88 PLN02350 phosphogluconate dehy 96.1 0.098 2.1E-06 57.0 14.1 153 36-217 57-222 (493)
89 PRK08269 3-hydroxybutyryl-CoA 95.6 0.1 2.3E-06 53.5 11.1 141 33-217 62-213 (314)
90 PRK06522 2-dehydropantoate 2-r 95.4 0.022 4.8E-07 57.4 5.5 98 321-423 128-231 (304)
91 PRK07417 arogenate dehydrogena 95.1 0.11 2.3E-06 52.3 9.0 109 39-157 49-167 (279)
92 PLN02712 arogenate dehydrogena 95.0 0.068 1.5E-06 60.4 8.0 110 36-155 412-535 (667)
93 PRK09287 6-phosphogluconate de 94.8 0.19 4.2E-06 54.3 10.6 155 34-217 37-205 (459)
94 PRK11199 tyrA bifunctional cho 94.8 0.17 3.6E-06 53.3 9.9 103 40-156 134-241 (374)
95 PF10727 Rossmann-like: Rossma 94.3 0.035 7.7E-07 49.4 3.1 47 40-86 60-108 (127)
96 KOG0409|consensus 93.9 0.49 1.1E-05 47.9 10.5 217 35-291 78-299 (327)
97 PF01113 DapB_N: Dihydrodipico 93.7 0.15 3.3E-06 44.9 5.9 73 33-116 52-124 (124)
98 PRK08818 prephenate dehydrogen 93.5 0.23 5E-06 52.2 7.7 106 39-155 42-153 (370)
99 PF02558 ApbA: Ketopantoate re 93.4 0.11 2.5E-06 46.6 4.6 53 44-105 63-115 (151)
100 PLN02712 arogenate dehydrogena 93.3 0.43 9.3E-06 54.0 10.0 112 35-156 94-219 (667)
101 COG0287 TyrA Prephenate dehydr 92.7 0.53 1.1E-05 47.6 8.6 123 43-177 59-194 (279)
102 PRK08605 D-lactate dehydrogena 91.8 0.15 3.2E-06 52.8 3.6 53 35-87 187-241 (332)
103 TIGR00745 apbA_panE 2-dehydrop 91.7 1.2 2.6E-05 44.4 10.0 125 292-423 92-224 (293)
104 TIGR00036 dapB dihydrodipicoli 91.6 0.63 1.4E-05 46.6 7.7 90 35-145 55-145 (266)
105 TIGR02279 PaaC-3OHAcCoADH 3-hy 91.2 1.8 3.8E-05 47.5 11.3 142 33-217 70-218 (503)
106 PRK12480 D-lactate dehydrogena 91.0 0.32 6.9E-06 50.4 5.0 52 36-87 186-239 (330)
107 PRK08229 2-dehydropantoate 2-r 89.9 0.61 1.3E-05 48.0 6.1 99 321-427 135-237 (341)
108 TIGR01724 hmd_rel H2-forming N 89.6 0.53 1.2E-05 48.3 5.1 118 35-160 68-198 (341)
109 PRK07066 3-hydroxybutyryl-CoA 88.9 2.5 5.4E-05 43.6 9.6 142 32-215 67-216 (321)
110 TIGR03026 NDP-sugDHase nucleot 88.1 0.51 1.1E-05 50.1 4.0 95 319-433 147-246 (411)
111 cd05297 GH4_alpha_glucosidase_ 87.8 0.19 4.1E-06 53.8 0.5 53 13-67 41-93 (423)
112 PF02737 3HCDH_N: 3-hydroxyacy 87.6 2.3 5E-05 39.9 7.8 109 33-157 64-179 (180)
113 PF07991 IlvN: Acetohydroxy ac 85.2 1.1 2.3E-05 41.7 3.9 47 40-87 52-99 (165)
114 PRK08268 3-hydroxy-acyl-CoA de 84.7 7.2 0.00016 42.8 10.8 140 34-217 73-220 (507)
115 PRK07819 3-hydroxybutyryl-CoA 84.0 7.8 0.00017 39.2 10.0 140 33-215 70-218 (286)
116 PRK06444 prephenate dehydrogen 83.9 1.3 2.8E-05 42.4 4.1 25 46-70 29-53 (197)
117 PRK12921 2-dehydropantoate 2-r 83.1 3.2 6.8E-05 41.8 6.8 85 336-422 142-233 (305)
118 PRK00048 dihydrodipicolinate r 81.2 5.9 0.00013 39.4 7.8 77 35-122 47-123 (257)
119 PF14833 NAD_binding_11: NAD-b 79.7 2.8 6.1E-05 36.5 4.4 94 179-292 4-102 (122)
120 PF03720 UDPG_MGDP_dh_C: UDP-g 78.1 1.9 4.2E-05 36.8 2.8 73 11-84 20-102 (106)
121 TIGR01763 MalateDH_bact malate 77.7 4.2 9.1E-05 41.6 5.6 61 33-103 55-131 (305)
122 smart00859 Semialdhyde_dh Semi 73.9 4 8.7E-05 35.3 3.7 40 47-86 64-103 (122)
123 PRK11154 fadJ multifunctional 72.6 9.2 0.0002 43.8 7.2 112 33-160 375-493 (708)
124 PLN00125 Succinyl-CoA ligase [ 71.4 15 0.00033 37.5 7.7 52 34-87 53-106 (300)
125 cd00650 LDH_MDH_like NAD-depen 71.2 7.8 0.00017 38.5 5.5 62 33-103 55-132 (263)
126 COG2423 Predicted ornithine cy 71.0 4 8.6E-05 42.3 3.5 45 34-82 181-225 (330)
127 PRK11730 fadB multifunctional 71.0 13 0.00028 42.6 7.9 113 33-161 378-497 (715)
128 TIGR02440 FadJ fatty oxidation 70.9 13 0.00028 42.5 7.9 139 33-215 370-515 (699)
129 PF10100 DUF2338: Uncharacteri 70.7 27 0.00059 37.1 9.4 118 39-163 74-207 (429)
130 TIGR01019 sucCoAalpha succinyl 70.1 18 0.00039 36.7 7.9 52 34-87 47-100 (286)
131 PTZ00187 succinyl-CoA syntheta 69.8 12 0.00027 38.5 6.7 51 35-87 73-125 (317)
132 PLN03139 formate dehydrogenase 69.5 6.6 0.00014 41.6 4.8 53 35-87 242-296 (386)
133 PRK05678 succinyl-CoA syntheta 68.7 14 0.0003 37.7 6.7 51 35-87 50-102 (291)
134 PRK15469 ghrA bifunctional gly 68.5 8.1 0.00017 39.7 5.1 48 40-87 182-231 (312)
135 PRK08618 ornithine cyclodeamin 68.2 5.7 0.00012 40.9 3.9 42 35-81 179-220 (325)
136 PRK07574 formate dehydrogenase 68.1 7.8 0.00017 41.0 5.0 53 35-87 235-289 (385)
137 PRK06223 malate dehydrogenase; 68.0 9.8 0.00021 38.6 5.6 62 34-105 57-134 (307)
138 PRK13243 glyoxylate reductase; 67.5 4.6 0.0001 41.8 3.1 48 40-87 196-245 (333)
139 TIGR02717 AcCoA-syn-alpha acet 67.4 14 0.00031 39.8 6.9 52 34-87 50-101 (447)
140 PRK05225 ketol-acid reductoiso 66.3 27 0.00059 37.8 8.6 47 40-87 89-135 (487)
141 PRK13304 L-aspartate dehydroge 64.8 25 0.00054 35.1 7.7 35 36-70 49-83 (265)
142 TIGR01327 PGDH D-3-phosphoglyc 64.8 6.6 0.00014 43.3 3.8 53 35-87 180-234 (525)
143 cd05212 NAD_bind_m-THF_DH_Cycl 63.6 8.7 0.00019 34.8 3.7 37 41-82 64-100 (140)
144 PRK07589 ornithine cyclodeamin 62.8 5.6 0.00012 41.5 2.7 43 35-79 180-222 (346)
145 TIGR02441 fa_ox_alpha_mit fatt 61.5 21 0.00045 41.1 7.2 54 33-87 400-455 (737)
146 PRK06932 glycerate dehydrogena 61.3 7 0.00015 40.1 3.1 48 40-87 189-238 (314)
147 PLN02928 oxidoreductase family 60.9 7.3 0.00016 40.6 3.1 49 39-87 217-267 (347)
148 TIGR01505 tartro_sem_red 2-hyd 60.3 10 0.00022 38.1 4.0 89 321-428 114-202 (291)
149 TIGR02437 FadB fatty oxidation 59.7 30 0.00064 39.8 8.0 138 33-216 378-524 (714)
150 PRK06436 glycerate dehydrogena 59.1 11 0.00023 38.6 3.9 49 39-87 164-214 (303)
151 COG4408 Uncharacterized protei 58.5 54 0.0012 34.1 8.6 115 39-163 76-209 (431)
152 PF02629 CoA_binding: CoA bind 57.3 32 0.00069 28.6 5.9 36 35-70 47-84 (96)
153 PF13380 CoA_binding_2: CoA bi 57.2 19 0.0004 31.3 4.6 48 34-84 41-88 (116)
154 cd05298 GH4_GlvA_pagL_like Gly 57.0 29 0.00062 37.5 6.9 28 33-60 59-86 (437)
155 PRK08410 2-hydroxyacid dehydro 56.2 9 0.00019 39.3 2.8 48 40-87 188-237 (311)
156 PLN02306 hydroxypyruvate reduc 56.2 11 0.00025 39.8 3.7 50 38-87 226-277 (386)
157 PRK00961 H(2)-dependent methyl 56.0 14 0.00029 37.4 3.8 45 35-79 128-173 (342)
158 TIGR01723 hmd_TIGR 5,10-methen 55.6 14 0.0003 37.4 3.8 45 35-79 126-171 (340)
159 PTZ00117 malate dehydrogenase; 55.4 16 0.00035 37.5 4.5 48 33-82 59-122 (319)
160 PRK11790 D-3-phosphoglycerate 55.2 15 0.00032 39.2 4.4 52 36-87 191-244 (409)
161 cd01339 LDH-like_MDH L-lactate 54.9 20 0.00044 36.2 5.2 62 34-105 53-130 (300)
162 TIGR02130 dapB_plant dihydrodi 53.6 61 0.0013 32.8 8.1 92 39-154 58-154 (275)
163 COG0289 DapB Dihydrodipicolina 53.5 42 0.00091 33.7 6.8 90 35-146 56-145 (266)
164 PF01118 Semialdhyde_dh: Semia 53.4 11 0.00024 32.7 2.5 50 35-87 53-102 (121)
165 PRK08291 ectoine utilization p 52.9 12 0.00027 38.5 3.3 24 36-59 185-208 (330)
166 PRK15409 bifunctional glyoxyla 52.8 13 0.00028 38.3 3.4 48 40-87 192-241 (323)
167 PRK13403 ketol-acid reductoiso 52.6 23 0.0005 36.7 5.0 156 35-206 59-237 (335)
168 PRK06487 glycerate dehydrogena 52.1 12 0.00026 38.5 2.9 48 40-87 189-238 (317)
169 PRK07634 pyrroline-5-carboxyla 52.0 14 0.0003 35.8 3.3 49 320-368 117-165 (245)
170 PF03447 NAD_binding_3: Homose 51.2 27 0.00058 29.9 4.6 49 35-86 44-94 (117)
171 PRK15438 erythronate-4-phospha 50.5 16 0.00035 38.6 3.6 48 40-87 159-212 (378)
172 PLN00135 malate dehydrogenase 50.4 57 0.0012 33.5 7.5 63 35-105 45-123 (309)
173 PF02056 Glyco_hydro_4: Family 50.3 12 0.00026 35.5 2.4 30 33-62 58-87 (183)
174 PRK13581 D-3-phosphoglycerate 50.2 16 0.00035 40.3 3.7 52 35-87 182-235 (526)
175 PLN02775 Probable dihydrodipic 49.4 97 0.0021 31.5 8.8 96 35-154 59-165 (286)
176 PF02826 2-Hacid_dh_C: D-isome 48.9 5.7 0.00012 37.0 0.0 46 38-87 81-132 (178)
177 COG1250 FadB 3-hydroxyacyl-CoA 48.5 32 0.00069 35.3 5.3 53 34-87 69-123 (307)
178 cd05197 GH4_glycoside_hydrolas 48.1 30 0.00065 37.2 5.3 27 34-60 60-86 (425)
179 PF01408 GFO_IDH_MocA: Oxidore 45.8 31 0.00068 29.1 4.2 48 35-86 47-96 (120)
180 PRK11861 bifunctional prephena 45.6 71 0.0015 36.4 8.1 96 52-155 1-109 (673)
181 PRK13302 putative L-aspartate 44.7 36 0.00079 34.1 5.0 42 37-81 56-97 (271)
182 PRK06407 ornithine cyclodeamin 43.6 22 0.00048 36.2 3.4 26 35-60 169-194 (301)
183 PRK07340 ornithine cyclodeamin 43.2 23 0.0005 36.1 3.4 38 39-81 179-216 (304)
184 COG0059 IlvC Ketol-acid reduct 43.1 40 0.00088 34.6 4.9 148 39-207 65-241 (338)
185 PRK12557 H(2)-dependent methyl 42.1 21 0.00047 37.1 3.0 88 318-426 145-232 (342)
186 PRK00257 erythronate-4-phospha 41.5 19 0.00041 38.1 2.5 48 40-87 159-212 (381)
187 PTZ00082 L-lactate dehydrogena 41.3 43 0.00093 34.5 5.0 22 34-56 61-82 (321)
188 PRK14189 bifunctional 5,10-met 40.9 19 0.00041 36.6 2.3 39 39-82 192-230 (285)
189 PLN02353 probable UDP-glucose 38.9 42 0.00091 36.6 4.7 42 34-75 398-440 (473)
190 PRK06823 ornithine cyclodeamin 38.7 32 0.0007 35.3 3.6 43 35-81 179-221 (315)
191 cd05294 LDH-like_MDH_nadp A la 38.3 48 0.001 33.8 4.9 45 35-81 60-120 (309)
192 TIGR01756 LDH_protist lactate 37.9 69 0.0015 32.9 5.9 46 37-82 49-110 (313)
193 COG1486 CelF Alpha-galactosida 37.8 20 0.00043 38.6 2.0 31 32-62 61-91 (442)
194 PRK05442 malate dehydrogenase; 37.7 63 0.0014 33.4 5.6 48 35-82 67-130 (326)
195 COG1052 LdhA Lactate dehydroge 37.6 37 0.00081 35.1 3.9 51 36-87 189-241 (324)
196 COG0362 Gnd 6-phosphogluconate 37.2 78 0.0017 33.8 6.1 119 11-146 36-158 (473)
197 TIGR02371 ala_DH_arch alanine 36.4 32 0.00068 35.5 3.2 25 35-59 179-203 (325)
198 COG0111 SerA Phosphoglycerate 35.5 34 0.00073 35.4 3.2 53 35-87 184-238 (324)
199 PF08546 ApbA_C: Ketopantoate 34.8 1.2E+02 0.0026 26.0 6.2 83 188-293 36-122 (125)
200 cd05293 LDH_1 A subgroup of L- 34.6 74 0.0016 32.6 5.5 21 35-56 59-79 (312)
201 PRK06141 ornithine cyclodeamin 34.6 27 0.00059 35.7 2.3 40 35-78 176-215 (314)
202 PF00056 Ldh_1_N: lactate/mala 34.5 40 0.00086 30.2 3.1 62 35-105 56-133 (141)
203 cd01338 MDH_choloroplast_like 34.0 83 0.0018 32.4 5.8 48 35-82 65-128 (322)
204 TIGR01757 Malate-DH_plant mala 34.0 67 0.0015 34.1 5.2 48 35-82 107-170 (387)
205 cd01486 Apg7 Apg7 is an E1-lik 33.4 54 0.0012 33.7 4.2 45 41-87 101-145 (307)
206 PF02423 OCD_Mu_crystall: Orni 33.0 35 0.00077 34.9 2.9 46 34-81 178-223 (313)
207 PRK05568 flavodoxin; Provision 33.0 74 0.0016 27.9 4.6 41 45-85 45-93 (142)
208 KOG0069|consensus 32.8 58 0.0013 33.9 4.4 48 40-87 209-258 (336)
209 PRK06199 ornithine cyclodeamin 32.6 34 0.00073 36.2 2.7 24 35-58 210-233 (379)
210 cd00300 LDH_like L-lactate deh 32.4 61 0.0013 32.9 4.5 46 35-82 54-115 (300)
211 PF03358 FMN_red: NADPH-depend 31.5 91 0.002 27.6 5.0 38 43-81 65-112 (152)
212 COG4007 Predicted dehydrogenas 31.3 1.4E+02 0.003 30.2 6.4 114 34-156 68-194 (340)
213 PRK06091 membrane protein FdrA 31.0 82 0.0018 35.0 5.4 71 36-116 105-175 (555)
214 TIGR01759 MalateDH-SF1 malate 30.2 96 0.0021 32.0 5.5 61 36-104 67-143 (323)
215 TIGR02853 spore_dpaA dipicolin 30.1 51 0.0011 33.4 3.4 40 40-82 201-240 (287)
216 TIGR03855 NAD_NadX aspartate d 29.6 92 0.002 30.5 5.0 35 37-71 25-60 (229)
217 PF02882 THF_DHG_CYH_C: Tetrah 29.5 45 0.00098 30.9 2.7 38 39-81 70-107 (160)
218 cd01336 MDH_cytoplasmic_cytoso 29.4 99 0.0021 31.9 5.5 48 35-82 65-128 (325)
219 TIGR03566 FMN_reduc_MsuE FMN r 29.2 1.1E+02 0.0025 28.0 5.4 29 41-69 61-95 (174)
220 COG4074 Mth H2-forming N5,N10- 28.6 62 0.0014 31.7 3.5 47 35-81 126-173 (343)
221 TIGR01771 L-LDH-NAD L-lactate 28.3 1.1E+02 0.0024 31.1 5.6 21 36-56 52-72 (299)
222 PRK13303 L-aspartate dehydroge 28.1 89 0.0019 31.1 4.7 47 35-84 48-94 (265)
223 PF12724 Flavodoxin_5: Flavodo 27.9 1.4E+02 0.0031 26.4 5.6 57 45-104 40-102 (143)
224 PRK00436 argC N-acetyl-gamma-g 27.1 1.2E+02 0.0027 31.4 5.7 77 45-134 65-149 (343)
225 COG0431 Predicted flavoprotein 26.1 1.4E+02 0.003 27.9 5.4 34 40-73 59-94 (184)
226 PLN00112 malate dehydrogenase 25.7 1.2E+02 0.0025 33.0 5.3 48 35-82 163-226 (444)
227 PF14229 DUF4332: Domain of un 25.6 72 0.0016 28.0 3.2 66 182-251 13-81 (122)
228 TIGR03567 FMN_reduc_SsuE FMN r 24.9 1.1E+02 0.0025 28.0 4.5 44 40-84 57-107 (171)
229 cd00704 MDH Malate dehydrogena 24.6 1.4E+02 0.0031 30.7 5.6 47 36-82 64-126 (323)
230 PRK14178 bifunctional 5,10-met 24.1 69 0.0015 32.5 3.0 39 39-82 186-224 (279)
231 cd01065 NAD_bind_Shikimate_DH 24.0 24 0.00052 31.4 -0.2 23 39-61 72-94 (155)
232 cd01337 MDH_glyoxysomal_mitoch 24.0 1.4E+02 0.0031 30.6 5.4 47 35-82 52-117 (310)
233 cd01079 NAD_bind_m-THF_DH NAD 23.8 37 0.0008 32.6 1.0 37 42-82 120-156 (197)
234 TIGR01850 argC N-acetyl-gamma- 23.8 1.1E+02 0.0023 31.9 4.5 44 41-87 61-104 (346)
235 PRK14194 bifunctional 5,10-met 23.7 84 0.0018 32.2 3.6 38 39-82 193-231 (301)
236 cd05296 GH4_P_beta_glucosidase 23.4 66 0.0014 34.5 2.9 25 34-58 61-85 (419)
237 PRK14177 bifunctional 5,10-met 23.3 58 0.0012 33.1 2.3 39 39-82 193-231 (284)
238 PRK09739 hypothetical protein; 23.2 1.7E+02 0.0037 27.5 5.5 28 41-68 72-105 (199)
239 PRK14181 bifunctional 5,10-met 23.2 56 0.0012 33.2 2.2 39 39-82 191-229 (287)
240 PRK05086 malate dehydrogenase; 23.1 1.3E+02 0.0028 30.9 4.9 18 39-56 60-77 (312)
241 PRK14188 bifunctional 5,10-met 23.1 79 0.0017 32.3 3.3 36 41-81 194-229 (296)
242 TIGR01772 MDH_euk_gproteo mala 23.0 1.1E+02 0.0025 31.3 4.5 23 34-56 50-75 (312)
243 PRK00170 azoreductase; Reviewe 22.8 1.3E+02 0.0028 28.1 4.6 26 43-68 81-112 (201)
244 PRK01355 azoreductase; Reviewe 22.7 1.5E+02 0.0032 28.0 5.0 28 42-69 71-104 (199)
245 cd05291 HicDH_like L-2-hydroxy 22.7 1.7E+02 0.0036 29.7 5.7 42 39-82 60-117 (306)
246 TIGR01021 rpsE_bact ribosomal 22.3 85 0.0019 28.9 3.1 46 420-465 99-148 (154)
247 PRK11579 putative oxidoreducta 22.3 1.7E+02 0.0036 30.1 5.6 47 36-86 50-98 (346)
248 PRK14175 bifunctional 5,10-met 22.2 60 0.0013 33.0 2.2 39 39-82 192-230 (286)
249 COG0157 NadC Nicotinate-nucleo 21.8 2E+02 0.0043 29.2 5.7 90 14-118 175-268 (280)
250 PRK13556 azoreductase; Provisi 21.6 1.3E+02 0.0028 28.6 4.4 29 41-69 82-116 (208)
251 cd05295 MDH_like Malate dehydr 21.6 1.7E+02 0.0036 31.9 5.5 47 35-81 186-248 (452)
252 PRK05569 flavodoxin; Provision 20.8 1.9E+02 0.0041 25.2 5.0 37 45-81 45-89 (141)
253 PRK10569 NAD(P)H-dependent FMN 20.7 1.4E+02 0.003 28.3 4.3 30 40-69 58-93 (191)
254 PRK08306 dipicolinate synthase 20.7 1.3E+02 0.0029 30.4 4.5 40 40-82 202-241 (296)
255 PRK14185 bifunctional 5,10-met 20.4 68 0.0015 32.8 2.2 39 39-82 195-233 (293)
256 PRK10792 bifunctional 5,10-met 20.3 79 0.0017 32.1 2.6 38 39-82 193-231 (285)
257 TIGR01758 MDH_euk_cyt malate d 20.3 1.7E+02 0.0038 30.1 5.2 47 36-82 63-125 (324)
258 PRK14173 bifunctional 5,10-met 20.2 68 0.0015 32.7 2.1 38 39-81 189-226 (287)
No 1
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=3.9e-83 Score=639.93 Aligned_cols=295 Identities=38% Similarity=0.545 Sum_probs=287.3
Q ss_pred CcccccccCcHHHHHHHHHcCCCCCCCCCCCCCCCeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEE
Q psy14065 1 MYVYEEMIDGKKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLS 80 (492)
Q Consensus 1 ~~~~~~~~~~~~~~~~in~~~~N~~ylp~i~l~~~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs 80 (492)
||+||++ +++.||++|+|++|||++.+|+++++|+|+.++++++|+|+++|||++++++++++++++++++++|+
T Consensus 29 lw~r~~~-----~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~ 103 (329)
T COG0240 29 LWGRDEE-----IVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVS 103 (329)
T ss_pred EEecCHH-----HHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECChHHHHHHHHHHhhhccCCCeEEE
Confidence 6999988 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccceeccCCccccHHHHHHhHhC-CceEEEeCcChHHHHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEcCCcc
Q psy14065 81 LIKGFDRAEGGGIDLISHIITRNLK-IKMTVLMGANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVD 159 (492)
Q Consensus 81 ~~KGl~~~~~~t~~~~se~i~e~l~-~~~~vlsGPn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~~D~~ 159 (492)
++|||++ +|.+++||++++.++ .++++|||||||.||++++||+++++|.|++.++++|++|++++||||+++|++
T Consensus 104 ~sKGie~---~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d~~~a~~v~~~f~~~~Frvy~~~Dv~ 180 (329)
T COG0240 104 ATKGLEP---ETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQEAAEKVQALFSSPYFRVYTSTDVI 180 (329)
T ss_pred EeccccC---CCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEecCCHHHHHHHHHHhCCCcEEEEecCchh
Confidence 9999998 799999999999998 459999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHHHHHHHHHCCCCCccccccccccchhhhhccC--CCCHHHH
Q psy14065 160 AVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYG--GRNRKVS 237 (492)
Q Consensus 160 GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s--~RN~~~G 237 (492)
|||++|||||||||||||+||+++|+|+++||+|||++||.||+.+| |++|+||+||+|+|||++||+| |||||||
T Consensus 181 GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~l--G~~~~T~~gLsGlGDLilTCts~~SRN~r~G 258 (329)
T COG0240 181 GVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVAL--GAKPETFMGLSGLGDLILTCTSPLSRNRRFG 258 (329)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHh--CCCcchhcccccccceeEecCCCccccHHHH
Confidence 99999999999999999999999999999999999999999999999 9999999999999999999999 8999999
Q ss_pred HHHHhCCCChHHHHHHhcCCceeecchhHHHHHHHHHhcCCCCCCchhhhhHHhhcCCCChHHHHHHHhcCCC
Q psy14065 238 EAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQQFIDAIREHPD 310 (492)
Q Consensus 238 ~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~~l~~~~~l~~~~PI~~av~~Il~~~~~p~~~i~~L~~~~~ 310 (492)
..|+| |.+.++++.++ |+++||++|++.++++++++++ +|||+++||+|++++++|+++++.||.|+.
T Consensus 259 ~~lg~-g~~~~e~l~~~--g~vvEGv~t~k~v~~la~~~~i--~mPI~~~Vy~vl~~~~~~~~~~~~L~~r~~ 326 (329)
T COG0240 259 LLLGQ-GLSLDEALEEI--GQVVEGVRTAKAVYELAKKLGI--EMPITEAVYRVLYEGLDPKEAIEELMGRDL 326 (329)
T ss_pred HHHhC-CCCHHHHHHhc--CCeeecHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHHHHHHhcccc
Confidence 99997 89999999988 9999999999999999999998 599999999999999999999999998874
No 2
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=4.6e-80 Score=636.71 Aligned_cols=309 Identities=50% Similarity=0.820 Sum_probs=293.1
Q ss_pred CcccccccCcHHHHHHHHHcCCCCCCCCCCCCCCCeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhc--cCCCCCeE
Q psy14065 1 MYVYEEMIDGKKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLG--KIKPDAVG 78 (492)
Q Consensus 1 ~~~~~~~~~~~~~~~~in~~~~N~~ylp~i~l~~~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~--~l~~~~~i 78 (492)
||+||++++++.+++.||++|+|++|||+++||++|++|+|++++++++|+||+|||||+++++++++++ ++++++++
T Consensus 46 lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~i 125 (365)
T PTZ00345 46 MWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARA 125 (365)
T ss_pred EEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEE
Confidence 7999999889999999999999999999999999999999999999999999999999999999999999 88878899
Q ss_pred EEEEccceeccCCccccHHHHHHhHhCCceEEEeCcChHHHHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEcCCc
Q psy14065 79 LSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDV 158 (492)
Q Consensus 79 Is~~KGl~~~~~~t~~~~se~i~e~l~~~~~vlsGPn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~~D~ 158 (492)
||++||+++. .++.+++||++++.++.++++++|||||.||++++||++++||.|++.++.++++|++++||+|+++|+
T Consensus 126 IS~aKGIe~~-t~~~~~~sevi~e~l~~~~~~LsGPs~A~Eva~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv 204 (365)
T PTZ00345 126 ISLTKGIIVE-NGKPVLCSDVIEEELGIPCCALSGANVANDVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDV 204 (365)
T ss_pred EEEeCCcccC-CCCcccHHHHHHHHhCCCeEEEECCCHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 9999999972 123389999999999878999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHHHHHHHHHCCCCCccccccccccchhhhhccCCCCHHHHH
Q psy14065 159 DAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKVSE 238 (492)
Q Consensus 159 ~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s~RN~~~G~ 238 (492)
+|||+|||||||||||+||+||+++|+|++|||+|||++||.||++++++|++++||+||||+|||++||+|||||+||+
T Consensus 205 ~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em~~l~~a~g~~~~~~T~~glaG~GDLi~Tc~sSRN~~~G~ 284 (365)
T PTZ00345 205 IGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMKLFGKIFFPNVMDETFFESCGLADLITTCLGGRNVRCAA 284 (365)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhCCCCCccchhccchHhHhhhcccCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999943359999999999999999999999999999
Q ss_pred HHHhCC--CChHHHHHHhcCCceeecchhHHHHHHHHHhcCCCCCCchhhhhHHhhcCCCChHHHHHHHhcCCC
Q psy14065 239 AFVKTG--KSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQQFIDAIREHPD 310 (492)
Q Consensus 239 ~l~~~G--~~~~~~~~~~~~g~~~EG~~t~~~v~~l~~~~~l~~~~PI~~av~~Il~~~~~p~~~i~~L~~~~~ 310 (492)
+|++.+ ++++++++++++|+++||+.|++.++++++++++.++|||++++|+|++++.+|+++++.|+.|+.
T Consensus 285 ~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~~~~Pi~~~vy~il~~~~~~~~~~~~l~~r~~ 358 (365)
T PTZ00345 285 EFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLESHDLKKEFPLFTVTYKIAFEGADPSSLIDVLSTNEL 358 (365)
T ss_pred HHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHhCCCCHHHHHHHHHcCCC
Confidence 999732 699999998878999999999999999999999955699999999999999999999999999885
No 3
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=100.00 E-value=9.9e-79 Score=622.80 Aligned_cols=302 Identities=60% Similarity=0.934 Sum_probs=290.3
Q ss_pred CcccccccCcHHHHHHHHHcCCCCCCCCCCCCCCCeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEE
Q psy14065 1 MYVYEEMIDGKKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLS 80 (492)
Q Consensus 1 ~~~~~~~~~~~~~~~~in~~~~N~~ylp~i~l~~~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs 80 (492)
||+|+++++++++.+.||++|+|++|||+++||+++++++|+++++++||+||+||||++++++++++++++++++++||
T Consensus 35 lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs 114 (342)
T TIGR03376 35 MWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAIS 114 (342)
T ss_pred EEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEE
Confidence 69999988889999999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred EEccceeccCCccccHHHHHHhHhCCceEEEeCcChHHHHhhcCCceEEEeecC----cchHHHHHHHhcCCCceEEEcC
Q psy14065 81 LIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANLAGEVAEEKFCETTIGCKD----KTLGPLLHALLQTPNFRVSVVD 156 (492)
Q Consensus 81 ~~KGl~~~~~~t~~~~se~i~e~l~~~~~vlsGPn~A~Ev~~~~pt~vvias~~----~~~~~~v~~lf~~~~f~v~~~~ 156 (492)
++||+++ +++|.+++||+|++.++.++++++|||||.||++++||+++++|.| .+.++.++++|+++|||+|+++
T Consensus 115 ~tKGie~-~~~~~~~~se~i~e~l~~~~~~lsGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~ 193 (342)
T TIGR03376 115 CIKGLEV-SKDGVKLLSDIIEEELGIPCGVLSGANLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVD 193 (342)
T ss_pred EeCCccc-CCCcCccHHHHHHHHhCCCeEEeeCcchHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcC
Confidence 9999997 3459999999999999878999999999999999999999999999 8999999999999999999999
Q ss_pred CcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHHHHHHHHHCCCCCcc--ccccccccchhhhhccCCCCH
Q psy14065 157 DVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSA--TFFESCGVADLITTCYGGRNR 234 (492)
Q Consensus 157 D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~t~g~~Em~~l~~~~~~G~~~~--t~~glaGlGDl~~Tc~s~RN~ 234 (492)
|++|+|+|||||||||||+||+||+++|+|++|||+|||++||.||++++ |++++ ||+||||+|||++||+|||||
T Consensus 194 Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~~l~~~~--g~~~~~~T~~gl~G~GDL~~Tc~ssRN~ 271 (342)
T TIGR03376 194 DVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEMIKFARMF--FPTGEVTFTFESCGVADLITTCLGGRNF 271 (342)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--CCCCCCCcccccchhhhhhheeecCccH
Confidence 99999999999999999999999999999999999999999999999999 99888 999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHhcCCceeecchhHHHHHHHHHhcCCCCCCchhhhhHHhhcCCCChHHHHHHH
Q psy14065 235 KVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQQFIDAI 305 (492)
Q Consensus 235 ~~G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~~l~~~~~l~~~~PI~~av~~Il~~~~~p~~~i~~L 305 (492)
+||++|++.|++++++.++++.|+++||+.|++.++++++++++++++||++++|+|++++++|+++++.+
T Consensus 272 ~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~~i~~~~Pi~~~vy~il~~~~~~~~~~~~~ 342 (342)
T TIGR03376 272 KVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNKDDEFPLFEAVYQILYEGLPPKKLPECL 342 (342)
T ss_pred HHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHcCCCcCCCHHHHHHHHHhCCCCHHHHHhhC
Confidence 99999997789999999985569999999999999999999999767999999999999999999998753
No 4
>KOG2711|consensus
Probab=100.00 E-value=4.1e-73 Score=560.41 Aligned_cols=311 Identities=69% Similarity=1.100 Sum_probs=298.5
Q ss_pred CcccccccCc--HHHHHHHHHcCCCCCCCCCCCCCCCeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeE
Q psy14065 1 MYVYEEMIDG--KKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVG 78 (492)
Q Consensus 1 ~~~~~~~~~~--~~~~~~in~~~~N~~ylp~i~l~~~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~i 78 (492)
||+|++++++ +.+.|.||++|+|++|||++++|+|+.+++|+.++++|||++|+++|+|++..++++|+.+++++.+.
T Consensus 56 mwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~a 135 (372)
T KOG2711|consen 56 MWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATA 135 (372)
T ss_pred EEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHHHhccCCEEEEeCChhhHHHHHHHHhcccCCCCeE
Confidence 8999999998 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccceeccCC-ccccHHHHHHhHhCCceEEEeCcChHHHHhhcCCceEEEeecCcchHH-HHHHHhcCCCceEEEcC
Q psy14065 79 LSLIKGFDRAEGG-GIDLISHIITRNLKIKMTVLMGANLAGEVAEEKFCETTIGCKDKTLGP-LLHALLQTPNFRVSVVD 156 (492)
Q Consensus 79 Is~~KGl~~~~~~-t~~~~se~i~e~l~~~~~vlsGPn~A~Ev~~~~pt~vvias~~~~~~~-~v~~lf~~~~f~v~~~~ 156 (492)
||++||++..+++ +.+++|++|.+.++.++.+|+|||+|.||++.+++..+|++.++.... .++++|++||||++..+
T Consensus 136 ISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~ 215 (372)
T KOG2711|consen 136 ISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVE 215 (372)
T ss_pred EEeecceeccCCCCceeehHHHHHHHhCCCceeecCCchHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEec
Confidence 9999999975444 589999999999999999999999999999999999999999765544 59999999999999999
Q ss_pred CcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHHHHHHHHHCCCCCccccccccccchhhhhccCCCCHHH
Q psy14065 157 DVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKV 236 (492)
Q Consensus 157 D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s~RN~~~ 236 (492)
|+.|||+|||||||+|||+||+|||++|+||++|++.+|+.||.+|++.++|+..++||+++||++||++||+++|||++
T Consensus 216 D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~Gl~Em~~F~~~f~p~~~~~t~~escGvaDlitTC~gGRNr~~ 295 (372)
T KOG2711|consen 216 DADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGLLEMIKFATHFYPGSKPTTFFESCGVADLITTCYGGRNRKV 295 (372)
T ss_pred cchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhhHHHHHHHHHHhCCCCCcceeeccccHHHHHHHHhcCccHHH
Confidence 99999999999999999999999999999999999999999999999999987799999999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHhcCCceeecchhHHHHHHHHHhcCCCCCCchhhhhHHhhcCCCChHHHHHHHhcCCCC
Q psy14065 237 SEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQQFIDAIREHPDH 311 (492)
Q Consensus 237 G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~~l~~~~~l~~~~PI~~av~~Il~~~~~p~~~i~~L~~~~~~ 311 (492)
++.+++.|+++++.+.++.+|+.+||+.|++.+|++++++++.+++|||.+||+|++++.+++++++.|.+++.+
T Consensus 296 aeafaktgk~~~~~E~ell~Gq~~QG~~Ta~~Vy~~L~~~~l~~kfPlftaVykI~~~~~~~~~lle~l~~~~~~ 370 (372)
T KOG2711|consen 296 AEAFAKTGKSLEELEKELLNGQKLQGPATAKEVYELLQKKGLVEKFPLFTAVYKICYERLPPQALLECLRNHPED 370 (372)
T ss_pred HHHHHHcCCCHHHHHHHhhCCCcccCcHHHHHHHHHHHHcChhhhCcHHHHHHHHHhcCCCHHHHHHHHhccccc
Confidence 999999889999999999999999999999999999999999888999999999999999999999999888753
No 5
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-65 Score=528.54 Aligned_cols=295 Identities=32% Similarity=0.430 Sum_probs=283.5
Q ss_pred CcccccccCcHHHHHHHHHcCCCCCCCC-CCCCCCCeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEE
Q psy14065 1 MYVYEEMIDGKKLTEIINETHENVKYLP-GHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGL 79 (492)
Q Consensus 1 ~~~~~~~~~~~~~~~~in~~~~N~~ylp-~i~l~~~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iI 79 (492)
+|.|+++ +++.||+.|.|.+|+| ++++|.++.+++|++++++++|+||+||||++++++++++++++++++++|
T Consensus 34 l~~~~~~-----~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vI 108 (341)
T PRK12439 34 QWVRSAE-----TADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVPSHGFRGVLTELAKELRPWVPVV 108 (341)
T ss_pred EEeCCHH-----HHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence 5888776 6999999999999999 889999999999999999999999999999999999999999998888999
Q ss_pred EEEccceeccCCccccHHHHHHhHhC-CceEEEeCcChHHHHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEcCCc
Q psy14065 80 SLIKGFDRAEGGGIDLISHIITRNLK-IKMTVLMGANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDV 158 (492)
Q Consensus 80 s~~KGl~~~~~~t~~~~se~i~e~l~-~~~~vlsGPn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~~D~ 158 (492)
+++||++. +|.+++|+++++.++ .++++++|||||.|++++.||++++++.+++.++.++++|++++||+|+++|+
T Consensus 109 sl~kGi~~---~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~via~~~~~~~~~v~~lf~~~~~~v~~s~Di 185 (341)
T PRK12439 109 SLVKGLEQ---GTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLAMPDQHLATRLSPLFRTRRFRVYTTDDV 185 (341)
T ss_pred EEEeCCcC---CCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCCEEEEEcCch
Confidence 99999997 789999999999986 56889999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHHHHHHHHHCCCCCccccccccccchhhhhccC--CCCHHH
Q psy14065 159 DAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYG--GRNRKV 236 (492)
Q Consensus 159 ~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s--~RN~~~ 236 (492)
+|+||+|+|||++|||+||++|+++|+|+++++++|+++||.+|++++ |++++||+||||+|||++||+| ||||+|
T Consensus 186 ~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~--G~~~~t~~gl~G~GDl~~Tc~s~~sRN~~~ 263 (341)
T PRK12439 186 VGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAM--GGNPETFAGLAGMGDLIVTCTSQRSRNRHV 263 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHh--CCCcccccccchhhhhhhhccCCCCccHHH
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999 799999
Q ss_pred HHHHHhCCCChHHHHHHhcCCceeecchhHHHHHHHHHhcCCCCCCchhhhhHHhhcCCCChHHHHHHHhcCCC
Q psy14065 237 SEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQQFIDAIREHPD 310 (492)
Q Consensus 237 G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~~l~~~~~l~~~~PI~~av~~Il~~~~~p~~~i~~L~~~~~ 310 (492)
|++|++ |++++++.+++ ++++||+.|++.++++++++++ ++||++++|+|++++++|+++++.|+.|+.
T Consensus 264 G~~l~~-g~~~~~~~~~~--~~~~EG~~~~~~~~~~~~~~~~--~~Pi~~~~~~il~~~~~~~~~~~~l~~~~~ 332 (341)
T PRK12439 264 GEQLGA-GKPIDEIIASM--NQVAEGVKAASVVMEFADEYGL--NMPIAREVDAVINHGSTVEQAYRGLIAEVP 332 (341)
T ss_pred HHHHHC-CCCHHHHHHhc--CCEEehHHHHHHHHHHHHHhCC--CCCHHHHHHHHHhCCCCHHHHHHHHhcCCC
Confidence 999997 99999999887 8999999999999999999999 599999999999999999999999999885
No 6
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=3.1e-53 Score=424.64 Aligned_cols=200 Identities=34% Similarity=0.456 Sum_probs=187.6
Q ss_pred CCCCCchhhhhHHhhcC-CCChHHHHHHHhcCCCCCCcccccchhhcCCCcHHHHhhccceEEEEeeCCCChHHHHHHHh
Q psy14065 278 MENKFPLFTAVHKICIG-EMKPQQFIDAIREHPDHKVSTAQKEAVLISSLTSSHVAEEKFCETTIGCKDKTLGPLLHALL 356 (492)
Q Consensus 278 l~~~~PI~~av~~Il~~-~~~p~~~i~~L~~~~~~~~~~~~~~~~l~gp~~a~ev~~~~~~~~~ia~~~~~~~~~~~~~f 356 (492)
+..+.+++.+.+.+..+ .+.++++++...... +.+||+|||||.||++|+||++|+||+|.+.++.+|++|
T Consensus 95 l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~--------~~~vLSGPs~A~EVa~g~pta~~vas~d~~~a~~v~~~f 166 (329)
T COG0240 95 LLKDAIIVSATKGLEPETGRLLSEIIEEELPDN--------PIAVLSGPSFAKEVAQGLPTAVVVASNDQEAAEKVQALF 166 (329)
T ss_pred ccCCCeEEEEeccccCCCcchHHHHHHHHcCCC--------eEEEEECccHHHHHhcCCCcEEEEecCCHHHHHHHHHHh
Confidence 44478999999999876 667888888765322 378999999999999999999999999999999999999
Q ss_pred CCCCeEEEEcCCchhHhHhhhhHHHHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHhCCCCCccccccccccceee
Q psy14065 357 QTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLI 436 (492)
Q Consensus 357 ~~~~f~~~~~~D~~gve~~galKNv~Ai~~Gi~~g~~~g~N~~aal~~~g~~E~~~~~~~~~~g~~~~t~~~~~g~gDl~ 436 (492)
+++|||||+++|++|||+||||||||||||||+||+++|+|++|||||||++||.||+.+| |++|+||+|++|+|||+
T Consensus 167 ~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~l--G~~~~T~~gLsGlGDLi 244 (329)
T COG0240 167 SSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVAL--GAKPETFMGLSGLGDLI 244 (329)
T ss_pred CCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHh--CCCcchhccccccccee
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred ecccC--CccHHHHHHHHhcCCCHHHHHHHhcCCceecchHhHHHHHHHHHhcCCC
Q psy14065 437 TTCYG--GRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNME 490 (492)
Q Consensus 437 ~T~~~--~rn~~~g~~~~~~g~~~~~~~~~~~~~~~~eG~~t~~~v~~~~~~~~~~ 490 (492)
+||+| ||||+||..++ +|++.++++.++ ||++||+.|++.+|+++++++++
T Consensus 245 lTCts~~SRN~r~G~~lg-~g~~~~e~l~~~--g~vvEGv~t~k~v~~la~~~~i~ 297 (329)
T COG0240 245 LTCTSPLSRNRRFGLLLG-QGLSLDEALEEI--GQVVEGVRTAKAVYELAKKLGIE 297 (329)
T ss_pred EecCCCccccHHHHHHHh-CCCCHHHHHHhc--CCeeecHHHHHHHHHHHHHcCCC
Confidence 99999 99999998886 899999999998 99999999999999999999976
No 7
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.8e-51 Score=418.59 Aligned_cols=292 Identities=27% Similarity=0.405 Sum_probs=274.0
Q ss_pred CcccccccCcHHHHHHHHHcCCCCCCCCCCCCCCCeEEecCHHHHh-ccCCEEEEecChHHHHHHHHHhhc-cCCCCCeE
Q psy14065 1 MYVYEEMIDGKKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAA-KDADILVFVVPHQFIVRLCSQLLG-KIKPDAVG 78 (492)
Q Consensus 1 ~~~~~~~~~~~~~~~~in~~~~N~~ylp~i~l~~~I~at~dl~~al-~~aDiIilaVPs~~~~~vl~~l~~-~l~~~~~i 78 (492)
+|.|+++ +++.|+++|.|.+|+|+..+|+++++++|+.+++ .++|+||++|||++++++++++++ +++++.++
T Consensus 28 l~~r~~~-----~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks~~~~~~l~~l~~~~l~~~~~v 102 (326)
T PRK14620 28 LWGRNHT-----TFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPTQQLRTICQQLQDCHLKKNTPI 102 (326)
T ss_pred EEecCHH-----HHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEE
Confidence 4777765 6999999999999999999999999999999887 589999999999999999999999 88888889
Q ss_pred EEEEccceeccCCccccHHHHHHhHhC-CceEEEeCcChHHHHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEcCC
Q psy14065 79 LSLIKGFDRAEGGGIDLISHIITRNLK-IKMTVLMGANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDD 157 (492)
Q Consensus 79 Is~~KGl~~~~~~t~~~~se~i~e~l~-~~~~vlsGPn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~~D 157 (492)
|+++||++. ++..++++.+.+.++ .++.+++||+||.|++.+.|+.+++++.+.+..+.++++|++++|+++.++|
T Consensus 103 v~~~nGi~~---~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~D 179 (326)
T PRK14620 103 LICSKGIEK---SSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLAGQNETLGSSLISKLSNENLKIIYSQD 179 (326)
T ss_pred EEEEcCeeC---CCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEecCCHHHHHHHHHHHCCCCeEEEecCc
Confidence 999999987 678899999999987 4678999999999999999999999999988889999999999999999999
Q ss_pred cchhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHHHHHHHHHCCCC--CccccccccccchhhhhccC--CCC
Q psy14065 158 VDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGA--KSATFFESCGVADLITTCYG--GRN 233 (492)
Q Consensus 158 ~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~t~g~~Em~~l~~~~~~G~--~~~t~~glaGlGDl~~Tc~s--~RN 233 (492)
++|+||++++||++|+++|+.+|+.+|+|+++++++++++||.++++++ |+ +++|++||||+||+++||++ +||
T Consensus 180 i~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~--G~~~~~~~~~gl~g~gdl~~t~~~~~~rN 257 (326)
T PRK14620 180 IIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAK--NGSIDLNTLIGPSCLGDLILTCTTLHSRN 257 (326)
T ss_pred chhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHh--CCCCCcchhhccchhhhhhheecCCCCCc
Confidence 9999999999999999999999999999999999999999999999999 76 89999999999999999996 699
Q ss_pred HHHHHHHHhCCCChHHHHHHhcCCceeecchhHHHHHHHHHhcCCCCCCchhhhhHHhhcCCCChHHHHHHHhc
Q psy14065 234 RKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQQFIDAIRE 307 (492)
Q Consensus 234 ~~~G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~~l~~~~~l~~~~PI~~av~~Il~~~~~p~~~i~~L~~ 307 (492)
|+||++|++ |..++++..+. +..+||+.+++.++++++++++ ++|+++++|++++++.+|+++++.||.
T Consensus 258 ~~~G~~l~~-g~~~~d~~~~~--~~~vegi~~~~~v~~~a~~~~i--~~P~~~~l~~~~~~~~~~~~~~~~~~~ 326 (326)
T PRK14620 258 MSFGFKIGN-GFNINQILSEG--KSVIEGFSTVKPLISLAKKLNI--ELPICESIYNLLYENISLEKTISVILS 326 (326)
T ss_pred HHHHHHHHC-CCCHHHHHHhC--CCEeecHHHHHHHHHHHHHhCC--CCCHHHHHHHHHhCCCCHHHHHHHHhC
Confidence 999999997 89999988766 6789999999999999999999 499999999999999999999998873
No 8
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-51 Score=424.17 Aligned_cols=201 Identities=44% Similarity=0.720 Sum_probs=185.2
Q ss_pred CCchhhhhHHhhcCC---CChHHHHHHHhcCCCCCCcccccchhhcCCCcHHHHhhccceEEEEeeCCCChHHHHHHHhC
Q psy14065 281 KFPLFTAVHKICIGE---MKPQQFIDAIREHPDHKVSTAQKEAVLISSLTSSHVAEEKFCETTIGCKDKTLGPLLHALLQ 357 (492)
Q Consensus 281 ~~PI~~av~~Il~~~---~~p~~~i~~L~~~~~~~~~~~~~~~~l~gp~~a~ev~~~~~~~~~ia~~~~~~~~~~~~~f~ 357 (492)
+.+++...+.|.... +.++++++..... +.++|+|||||.||++|+||++++||+|.+.++.++++|+
T Consensus 122 ~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~---------~~~~LsGPs~A~Eva~~~pt~~vias~~~~~a~~~~~lf~ 192 (365)
T PTZ00345 122 HARAISLTKGIIVENGKPVLCSDVIEEELGI---------PCCALSGANVANDVAREEFSEATIGCEDKDDALIWQRLFD 192 (365)
T ss_pred CCEEEEEeCCcccCCCCcccHHHHHHHHhCC---------CeEEEECCCHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhC
Confidence 457888888887553 5688888866532 4689999999999999999999999999999999999999
Q ss_pred CCCeEEEEcCCchhHhHhhhhHHHHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHhCCCCCccccccccccceeee
Q psy14065 358 TPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLIT 437 (492)
Q Consensus 358 ~~~f~~~~~~D~~gve~~galKNv~Ai~~Gi~~g~~~g~N~~aal~~~g~~E~~~~~~~~~~g~~~~t~~~~~g~gDl~~ 437 (492)
++|||+|+++|++|||+|||||||||||+||+||+++|+|++|||||||++||.+|+++|++|++++||+||||+|||++
T Consensus 193 ~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em~~l~~a~g~~~~~~T~~glaG~GDLi~ 272 (365)
T PTZ00345 193 RPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMKLFGKIFFPNVMDETFFESCGLADLIT 272 (365)
T ss_pred CCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhCCCCCccchhccchHhHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999954569999999999999999
Q ss_pred cccCCccHHHHHHHHhc--CCCHHHHHHHhcCCceecchHhHHHHHHHHHhcCCC
Q psy14065 438 TCYGGRNRKVSEAFVKT--GKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNME 490 (492)
Q Consensus 438 T~~~~rn~~~g~~~~~~--g~~~~~~~~~~~~~~~~eG~~t~~~v~~~~~~~~~~ 490 (492)
||+|||||+||+.|++. |++++++++++++|+++||+.|++.+|+++++++++
T Consensus 273 Tc~sSRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~ 327 (365)
T PTZ00345 273 TCLGGRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLESHDLK 327 (365)
T ss_pred cccCCCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHHHcCCC
Confidence 99999999999999842 279999999988899999999999999999999984
No 9
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=100.00 E-value=3.5e-51 Score=419.46 Aligned_cols=202 Identities=51% Similarity=0.746 Sum_probs=186.8
Q ss_pred CCCchhhhhHHhhcC---CCChHHHHHHHhcCCCCCCcccccchhhcCCCcHHHHhhccceEEEEeeCC----CChHHHH
Q psy14065 280 NKFPLFTAVHKICIG---EMKPQQFIDAIREHPDHKVSTAQKEAVLISSLTSSHVAEEKFCETTIGCKD----KTLGPLL 352 (492)
Q Consensus 280 ~~~PI~~av~~Il~~---~~~p~~~i~~L~~~~~~~~~~~~~~~~l~gp~~a~ev~~~~~~~~~ia~~~----~~~~~~~ 352 (492)
++.|++...+.+..+ .+.++++++..... +.++|+|||||.||++|+||++++||.| .+.++.+
T Consensus 108 ~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~---------~~~~lsGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~ 178 (342)
T TIGR03376 108 PNARAISCIKGLEVSKDGVKLLSDIIEEELGI---------PCGVLSGANLANEVAKEKFSETTVGYRDPADFDVDARVL 178 (342)
T ss_pred CCCEEEEEeCCcccCCCcCccHHHHHHHHhCC---------CeEEeeCcchHHHHHcCCCceEEEEeCCCcchHHHHHHH
Confidence 356899988988754 46788888866532 4689999999999999999999999999 8899999
Q ss_pred HHHhCCCCeEEEEcCCchhHhHhhhhHHHHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHhCCCCCcc--cccccc
Q psy14065 353 HALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSA--TFFESC 430 (492)
Q Consensus 353 ~~~f~~~~f~~~~~~D~~gve~~galKNv~Ai~~Gi~~g~~~g~N~~aal~~~g~~E~~~~~~~~~~g~~~~--t~~~~~ 430 (492)
+++|+++|||+|+++|++|||+|||||||||||+||++|+++|+|++|||||||++||.+|+++| |++++ ||+|+|
T Consensus 179 ~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~~l~~~~--g~~~~~~T~~gl~ 256 (342)
T TIGR03376 179 KALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEMIKFARMF--FPTGEVTFTFESC 256 (342)
T ss_pred HHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--CCCCCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 88777 999999
Q ss_pred ccceeeecccCCccHHHHHHHHhcCCCHHHHHHHhcCCceecchHhHHHHHHHHHhcCCCCC
Q psy14065 431 GVADLITTCYGGRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENK 492 (492)
Q Consensus 431 g~gDl~~T~~~~rn~~~g~~~~~~g~~~~~~~~~~~~~~~~eG~~t~~~v~~~~~~~~~~~~ 492 (492)
|+|||++||+|||||+||+.|+++|+++++++++++.|+++||+.|++.+|+++++++++++
T Consensus 257 G~GDL~~Tc~ssRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~~i~~~ 318 (342)
T TIGR03376 257 GVADLITTCLGGRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNKDDE 318 (342)
T ss_pred hhhhhhheeecCccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHcCCCcC
Confidence 99999999999999999999985599999999996669999999999999999999999854
No 10
>KOG2711|consensus
Probab=100.00 E-value=2e-47 Score=378.05 Aligned_cols=173 Identities=69% Similarity=1.088 Sum_probs=166.9
Q ss_pred hhhcCCCcHHHHhhccceEEEEeeCCCChHH-HHHHHhCCCCeEEEEcCCchhHhHhhhhHHHHHHHHHHhhhcCCCccH
Q psy14065 320 AVLISSLTSSHVAEEKFCETTIGCKDKTLGP-LLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNT 398 (492)
Q Consensus 320 ~~l~gp~~a~ev~~~~~~~~~ia~~~~~~~~-~~~~~f~~~~f~~~~~~D~~gve~~galKNv~Ai~~Gi~~g~~~g~N~ 398 (492)
.||+|||+|.|||+++||++||||+++.... .|+++|++|||||+.++|+.|||+|||||||+|+|+||+|||++|+||
T Consensus 167 ~vL~GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NT 246 (372)
T KOG2711|consen 167 SVLMGANIASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNT 246 (372)
T ss_pred eeecCCchHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcch
Confidence 5999999999999999999999999776554 599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHhCCCCCccccccccccceeeecccCCccHHHHHHHHhcCCCHHHHHHHhcCCceecchHhHH
Q psy14065 399 KAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTAD 478 (492)
Q Consensus 399 ~aal~~~g~~E~~~~~~~~~~g~~~~t~~~~~g~gDl~~T~~~~rn~~~g~~~~~~g~~~~~~~~~~~~~~~~eG~~t~~ 478 (492)
+||++++|+.||++|++.|||+..++||+|+||++||++||+++|||++++.+++.|+|+++.++++++||.+||+.||+
T Consensus 247 kaAi~r~Gl~Em~~F~~~f~p~~~~~t~~escGvaDlitTC~gGRNr~~aeafaktgk~~~~~E~ell~Gq~~QG~~Ta~ 326 (372)
T KOG2711|consen 247 KAAIIRLGLLEMIKFATHFYPGSKPTTFFESCGVADLITTCYGGRNRKVAEAFAKTGKSLEELEKELLNGQKLQGPATAK 326 (372)
T ss_pred HHHHHHhhHHHHHHHHHHhCCCCCcceeeccccHHHHHHHHhcCccHHHHHHHHHcCCCHHHHHHHhhCCCcccCcHHHH
Confidence 99999999999999999999888999999999999999999999999999999988899999999999999999999999
Q ss_pred HHHHHHHhcCCCCC
Q psy14065 479 EVNYMLKNKNMENK 492 (492)
Q Consensus 479 ~v~~~~~~~~~~~~ 492 (492)
.||+++++.++.||
T Consensus 327 ~Vy~~L~~~~l~~k 340 (372)
T KOG2711|consen 327 EVYELLQKKGLVEK 340 (372)
T ss_pred HHHHHHHHcChhhh
Confidence 99999999999775
No 11
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-44 Score=369.02 Aligned_cols=292 Identities=32% Similarity=0.478 Sum_probs=265.1
Q ss_pred CcccccccCcHHHHHHHHHcCCCCCCCCCCCCCCCeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEE
Q psy14065 1 MYVYEEMIDGKKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLS 80 (492)
Q Consensus 1 ~~~~~~~~~~~~~~~~in~~~~N~~ylp~i~l~~~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs 80 (492)
+|.|+++ ..+.++..+.|..|+++.+++.++.+++|++++++++|+||++||+++++++++.++ +..++|+
T Consensus 32 ~~~r~~~-----~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~~~~~~~v~~~l~----~~~~vi~ 102 (328)
T PRK14618 32 LWARRPE-----FAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVPSKALRETLAGLP----RALGYVS 102 (328)
T ss_pred EEeCCHH-----HHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECchHHHHHHHHhcC----cCCEEEE
Confidence 4667654 588899889999999999998889999999999999999999999999999887654 5678999
Q ss_pred EEccceeccCCccccHHHHHHhHhCCceEEEeCcChHHHHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEcCCcch
Q psy14065 81 LIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDA 160 (492)
Q Consensus 81 ~~KGl~~~~~~t~~~~se~i~e~l~~~~~vlsGPn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~~D~~G 160 (492)
++||+.+. +++...+++++.+....++.++.||++|.+++++.|+..++++.+++..+.++++|++.++++++++|++|
T Consensus 103 ~~~Gi~~~-~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~~~~v~~~~di~g 181 (328)
T PRK14618 103 CAKGLAPD-GGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAFSGPSFRVYTSRDRVG 181 (328)
T ss_pred EeeccccC-CCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 99999862 22467888888774444678899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHHHHHHHHHCCCCCccccccccccchhhhhccC--CCCHHHHH
Q psy14065 161 VEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYG--GRNRKVSE 238 (492)
Q Consensus 161 vEl~galKNv~AIa~Gi~~gl~~g~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s--~RN~~~G~ 238 (492)
+|+++++||++||++|++++++++.|+++++++++++||..|++++ |.+++|+++++|+|||++||+| +||+++|+
T Consensus 182 ~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~--G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~ 259 (328)
T PRK14618 182 VELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVAL--GAEEATFYGLSGLGDLIATATSPHSRNRAAGE 259 (328)
T ss_pred hhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHh--CCCccchhcCcchhheeeEeccCCCccHHHHH
Confidence 9999999999999999999999999999999999999999999999 9999999999999999999998 69999999
Q ss_pred HHHhCCCChHHHHHHhcCCceeecchhHHHHHHHHHhcCCCCCCchhhhhHHhhcCCCChHHHHHHHhcCCC
Q psy14065 239 AFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQQFIDAIREHPD 310 (492)
Q Consensus 239 ~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~~l~~~~~l~~~~PI~~av~~Il~~~~~p~~~i~~L~~~~~ 310 (492)
++++ |+++++... .+.+.||.++++.++++++++++ ++|++.++|++++++.+|+++++.|++|+.
T Consensus 260 ~~~~-g~~~~~~~~---~~~~~~g~kd~~~~~~la~~~~~--~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (328)
T PRK14618 260 AIVR-GVDREHLEA---GGKVVEGLYTVKALDAWAKAHGH--DLPIVEAVARVARGGWDPLAGLRSLMGREA 325 (328)
T ss_pred HHhC-CCCHHHHHH---cCCEEecHHHHHHHHHHHHHhCC--CCCHHHHHHHHHhCCCCHHHHHHHHhcCCC
Confidence 9997 877775532 36899999999999999999999 599999999999999999999999999885
No 12
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=5.9e-44 Score=362.99 Aligned_cols=261 Identities=28% Similarity=0.439 Sum_probs=248.3
Q ss_pred cCHHHHhccCCEEEEecChHHHHHHHHHhhcc-CCCCCeEEEEEccceeccCCccccHHHHHHhHhC-CceEEEeCcChH
Q psy14065 40 PDVVEAAKDADILVFVVPHQFIVRLCSQLLGK-IKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLK-IKMTVLMGANLA 117 (492)
Q Consensus 40 ~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~-l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~-~~~~vlsGPn~A 117 (492)
++++++++++|+||+++|++++++++++++++ ++++.++|+++||+++ .+.+++++.+.+.++ .++++++||++|
T Consensus 39 ~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~---~~~~~~s~~~~~~~~~~~v~~i~gp~~a 115 (308)
T PRK14619 39 LSLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPPETIIVTATKGLDP---ETTRTPSQIWQAAFPNHPVVVLSGPNLS 115 (308)
T ss_pred CCHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCCCcEEEEeCCcccC---CCCcCHHHHHHHHcCCCceEEEECCCcH
Confidence 67889999999999999999999999999885 6778899999999998 688999999998875 578899999999
Q ss_pred HHHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHHHHHHH
Q psy14065 118 GEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLM 197 (492)
Q Consensus 118 ~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~t~g~~ 197 (492)
.|++++.|+.+++++.+.+..+.++++|++.+|++++++|++|+|++++|||++||++|++++++++.|+++++++++++
T Consensus 116 ~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~ 195 (308)
T PRK14619 116 KEIQQGLPAATVVASRDLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALP 195 (308)
T ss_pred HHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCccccccccccchhhhhccC--CCCHHHHHHHHhCCCChHHHHHHhcCCceeecchhHHHHHHHHHh
Q psy14065 198 EMVKFTELFYPGAKSATFFESCGVADLITTCYG--GRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKN 275 (492)
Q Consensus 198 Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s--~RN~~~G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~~l~~~ 275 (492)
||.+|++++ |.+++|+++++|+||+++||++ +||+++|..+++ |++.+++.+++ ++++||+++++.+++++++
T Consensus 196 E~~~l~~~~--G~~~~t~~~~~g~gd~~~t~~~~~~rn~~~g~~l~~-g~~~~~~~~~~--~~~~eG~~~~~~~~~~~~~ 270 (308)
T PRK14619 196 EMIRVGTHL--GAQTETFYGLSGLGDLLATCTSPLSRNYQVGYGLAQ-GKSLEQILAEL--EGTAEGVNTANVLVQLAQQ 270 (308)
T ss_pred HHHHHHHHh--CCCccccccccchhhhheeecCCCCccHHHHHHHHC-CCCHHHHHHhc--CCEeecHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999 899999999996 89999999887 6799999999999999999
Q ss_pred cCCCCCCchhhhhHHhhcCCCChHHHHHHHhcCCC
Q psy14065 276 KNMENKFPLFTAVHKICIGEMKPQQFIDAIREHPD 310 (492)
Q Consensus 276 ~~l~~~~PI~~av~~Il~~~~~p~~~i~~L~~~~~ 310 (492)
+++ ++|++.++|++++++.+|+++++.|++|+.
T Consensus 271 ~~~--~~Pl~~~v~~i~~~~~~~~~~~~~l~~~~~ 303 (308)
T PRK14619 271 QNI--AVPITEQVYRLLQGEITPQQALEELMERDL 303 (308)
T ss_pred cCC--CCCHHHHHHHHHcCCCCHHHHHHHHHcCCC
Confidence 999 499999999999999999999999998874
No 13
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=6.4e-42 Score=352.70 Aligned_cols=197 Identities=32% Similarity=0.463 Sum_probs=179.4
Q ss_pred CCchhhhhHHhhcC-CCChHHHHHHHhcCCCCCCcccccchhhcCCCcHHHHhhccceEEEEeeCCCChHHHHHHHhCCC
Q psy14065 281 KFPLFTAVHKICIG-EMKPQQFIDAIREHPDHKVSTAQKEAVLISSLTSSHVAEEKFCETTIGCKDKTLGPLLHALLQTP 359 (492)
Q Consensus 281 ~~PI~~av~~Il~~-~~~p~~~i~~L~~~~~~~~~~~~~~~~l~gp~~a~ev~~~~~~~~~ia~~~~~~~~~~~~~f~~~ 359 (492)
+.|++.....+-.. ...+++.++..... .+.++++||++|.|+++|.|+.+++++.|.+.++.++++|+++
T Consensus 104 ~~~vIsl~kGi~~~t~~~~se~i~~~l~~--------~~~~~l~GP~~a~ev~~g~~t~~via~~~~~~~~~v~~lf~~~ 175 (341)
T PRK12439 104 WVPVVSLVKGLEQGTNMRMSQIIEEVLPG--------HPAGILAGPNIAREVAEGYAAAAVLAMPDQHLATRLSPLFRTR 175 (341)
T ss_pred CCEEEEEEeCCcCCCCCcHHHHHHHHcCC--------CCeEEEECCCHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCC
Confidence 46777766666433 45566777654311 1357899999999999999999999999999999999999999
Q ss_pred CeEEEEcCCchhHhHhhhhHHHHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHhCCCCCccccccccccceeeecc
Q psy14065 360 NFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTC 439 (492)
Q Consensus 360 ~f~~~~~~D~~gve~~galKNv~Ai~~Gi~~g~~~g~N~~aal~~~g~~E~~~~~~~~~~g~~~~t~~~~~g~gDl~~T~ 439 (492)
+||+|.++|++|+||||+||||+||++||++|+++|+|++|++|+||++||.+|++++ |++++||+|+||+|||++||
T Consensus 176 ~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~--G~~~~t~~gl~G~GDl~~Tc 253 (341)
T PRK12439 176 RFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAM--GGNPETFAGLAGMGDLIVTC 253 (341)
T ss_pred CEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHh--CCCcccccccchhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred cC--CccHHHHHHHHhcCCCHHHHHHHhcCCceecchHhHHHHHHHHHhcCCC
Q psy14065 440 YG--GRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNME 490 (492)
Q Consensus 440 ~~--~rn~~~g~~~~~~g~~~~~~~~~~~~~~~~eG~~t~~~v~~~~~~~~~~ 490 (492)
+| ||||+||+.++ +|++++++.+++ ++++||+.|++.+|+++++++++
T Consensus 254 ~s~~sRN~~~G~~l~-~g~~~~~~~~~~--~~~~EG~~~~~~~~~~~~~~~~~ 303 (341)
T PRK12439 254 TSQRSRNRHVGEQLG-AGKPIDEIIASM--NQVAEGVKAASVVMEFADEYGLN 303 (341)
T ss_pred cCCCCccHHHHHHHH-CCCCHHHHHHhc--CCEEehHHHHHHHHHHHHHhCCC
Confidence 99 89999999998 799999999988 89999999999999999999885
No 14
>PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1.1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B ....
Probab=100.00 E-value=3.6e-42 Score=313.10 Aligned_cols=145 Identities=50% Similarity=0.764 Sum_probs=133.0
Q ss_pred CCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHHHHHHHHHCCCCCcc-ccccccccchhhhhccC--CC
Q psy14065 156 DDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSA-TFFESCGVADLITTCYG--GR 232 (492)
Q Consensus 156 ~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~t~g~~Em~~l~~~~~~G~~~~-t~~glaGlGDl~~Tc~s--~R 232 (492)
+|++|+|+|||||||||||+||++|+++|+|+++++++||++||.+|++++ |++++ ||+|+||+|||++||+| ||
T Consensus 1 ~Dv~GvEl~galKNi~Aia~Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~--gg~~~~t~~~laGlGDLi~T~~s~~sR 78 (149)
T PF07479_consen 1 SDVVGVELCGALKNIYAIAAGIADGLGLGDNTKAALITRGLAEMSRLAKAL--GGDPENTFFGLAGLGDLILTCTSDKSR 78 (149)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH--TSSCCGGGCSTTTHHHHHHHHHHTTSH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHh--CCCCcccccccchHhhhHHHhcCCCCC
Confidence 699999999999999999999999999999999999999999999999999 99999 99999999999999999 89
Q ss_pred CHHHHHHHHhCC-CChHHHHHHhcCCceeecchhHHHHHHHHHhcCCCCCCchhhhhHHhhcCCCChHHHHHHH
Q psy14065 233 NRKVSEAFVKTG-KSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQQFIDAI 305 (492)
Q Consensus 233 N~~~G~~l~~~G-~~~~~~~~~~~~g~~~EG~~t~~~v~~l~~~~~l~~~~PI~~av~~Il~~~~~p~~~i~~L 305 (492)
||+||++|++ | ++++++.+++++++++||+.+++.++++++++++ ++||++++|+|++++.+|+++++.|
T Consensus 79 N~~~G~~l~~-g~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i--~~Pl~~~vy~Il~~~~~~~~~i~~l 149 (149)
T PF07479_consen 79 NRRFGKALGK-GGKSIEEAEKEMLGGQTVEGVRTAKIVYELAEKYNI--EFPLFTAVYKILYENESPEEAIEEL 149 (149)
T ss_dssp HHHHHHHHHH-TTS-HHHHHHHHTTTS--HHHHHHHHHHHHHHHCT---GSHHHHHHHHHHHS---HHHHHHHH
T ss_pred cHHHHHHHHc-cCCCHHHHHHhhhhcchHHHHHHHHHHHHHHHHhCC--CChHHHHHHHHHcCcCCHHHHHHcC
Confidence 9999999998 6 9999999998889999999999999999999999 5999999999999999999999875
No 15
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=3.5e-38 Score=321.57 Aligned_cols=292 Identities=35% Similarity=0.527 Sum_probs=270.0
Q ss_pred cccccccCcHHHHHHHHHcCCCCCCCCCCCCCCCeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEE
Q psy14065 2 YVYEEMIDGKKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSL 81 (492)
Q Consensus 2 ~~~~~~~~~~~~~~~in~~~~N~~ylp~i~l~~~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~ 81 (492)
|.|+++ .++.++..+.+..|+++..++.++++++|++++++++|+||+|||+++++++++++.+++++++++|++
T Consensus 30 ~~r~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~ 104 (325)
T PRK00094 30 WARDPE-----QAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPSQALREVLKQLKPLLPPDAPIVWA 104 (325)
T ss_pred EECCHH-----HHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 555544 688888878788888998888889999999988999999999999999999999999999888999999
Q ss_pred EccceeccCCccccHHHHHHhHhCC--ceEEEeCcChHHHHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEcCCcc
Q psy14065 82 IKGFDRAEGGGIDLISHIITRNLKI--KMTVLMGANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVD 159 (492)
Q Consensus 82 ~KGl~~~~~~t~~~~se~i~e~l~~--~~~vlsGPn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~~D~~ 159 (492)
++|+.+ ++.+.+++.+++.++. ...++.||+++.++..+.|+.+++++.+.+..+.++++|++.+|+++.++|+.
T Consensus 105 ~ngv~~---~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~ 181 (325)
T PRK00094 105 TKGIEP---GTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDEELAERVQELFHSPYFRVYTNTDVI 181 (325)
T ss_pred eecccC---CCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCCEEEEecCCcc
Confidence 999997 6788999999998763 67899999999999999999999998888999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHHHHHHHHHCCCCCccccccccccchhhhhccC--CCCHHHH
Q psy14065 160 AVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYG--GRNRKVS 237 (492)
Q Consensus 160 GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s--~RN~~~G 237 (492)
|+|+++++||++++++|+.++++++.|...+++.++++|+..+++++ |.+++++++++|+||+++||+| +||+.+|
T Consensus 182 g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~--G~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g 259 (325)
T PRK00094 182 GVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVAL--GANPETFLGLAGLGDLVLTCTSPLSRNRRFG 259 (325)
T ss_pred hhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHh--CCChhhhhcccHhhhhhhhccCCCCccHHHH
Confidence 99999999999999999999999999999999999999999999999 9999999999999999999999 6999999
Q ss_pred HHHHhCCCChHHHHHHhcCCceeecchhHHHHHHHHHhcCCCCCCchhhhhHHhhcCCCChHHHHHHHhcC
Q psy14065 238 EAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQQFIDAIREH 308 (492)
Q Consensus 238 ~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~~l~~~~~l~~~~PI~~av~~Il~~~~~p~~~i~~L~~~ 308 (492)
..+++ |.+..++..++ +.+.||.++++.+++++++++++ +|+..++|++++++++|+++++.|+.|
T Consensus 260 ~~~~~-~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~~~~--~P~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (325)
T PRK00094 260 LALGQ-GKSLEEALAEI--GMVAEGVRTAKAVYELAKKLGVE--MPITEAVYAVLYEGKDPREAVEDLMGR 325 (325)
T ss_pred HHHHC-CCCHHHHHHHc--CCEeecHHHHHHHHHHHHHhCCC--CCHHHHHHHHHcCCCCHHHHHHHHhcC
Confidence 99986 88777776665 68999999999999999999994 999999999999999999999998764
No 16
>PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1.1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B ....
Probab=100.00 E-value=2.7e-37 Score=281.16 Aligned_cols=121 Identities=50% Similarity=0.767 Sum_probs=112.6
Q ss_pred CCchhHhHhhhhHHHHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHhCCCCCcc-ccccccccceeeecccC--Cc
Q psy14065 367 DDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSA-TFFESCGVADLITTCYG--GR 443 (492)
Q Consensus 367 ~D~~gve~~galKNv~Ai~~Gi~~g~~~g~N~~aal~~~g~~E~~~~~~~~~~g~~~~-t~~~~~g~gDl~~T~~~--~r 443 (492)
+|++|||+||||||||||++||++|+++|+|++||+|+||++||.+|++++ |++++ ||+|+||+|||++||+| ||
T Consensus 1 ~Dv~GvEl~galKNi~Aia~Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~--gg~~~~t~~~laGlGDLi~T~~s~~sR 78 (149)
T PF07479_consen 1 SDVVGVELCGALKNIYAIAAGIADGLGLGDNTKAALITRGLAEMSRLAKAL--GGDPENTFFGLAGLGDLILTCTSDKSR 78 (149)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH--TSSCCGGGCSTTTHHHHHHHHHHTTSH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHh--CCCCcccccccchHhhhHHHhcCCCCC
Confidence 699999999999999999999999999999999999999999999999999 99999 99999999999999999 99
Q ss_pred cHHHHHHHHhcC-CCHHHHHHHhcCCceecchHhHHHHHHHHHhcCCC
Q psy14065 444 NRKVSEAFVKTG-KSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNME 490 (492)
Q Consensus 444 n~~~g~~~~~~g-~~~~~~~~~~~~~~~~eG~~t~~~v~~~~~~~~~~ 490 (492)
||+||+.++ +| ++++++.+++++++++||+.|++.+++++++++++
T Consensus 79 N~~~G~~l~-~g~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~ 125 (149)
T PF07479_consen 79 NRRFGKALG-KGGKSIEEAEKEMLGGQTVEGVRTAKIVYELAEKYNIE 125 (149)
T ss_dssp HHHHHHHHH-HTTS-HHHHHHHHTTTS--HHHHHHHHHHHHHHHCT-G
T ss_pred cHHHHHHHH-ccCCCHHHHHHhhhhcchHHHHHHHHHHHHHHHHhCCC
Confidence 999999998 56 99999999998899999999999999999999874
No 17
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.97 E-value=3.9e-31 Score=270.79 Aligned_cols=197 Identities=26% Similarity=0.349 Sum_probs=172.9
Q ss_pred CCchhhhhHHhhcC-CCChHHHHHHHhcCCCCCCcccccchhhcCCCcHHHHhhccceEEEEeeCCCChHHHHHHHhCCC
Q psy14065 281 KFPLFTAVHKICIG-EMKPQQFIDAIREHPDHKVSTAQKEAVLISSLTSSHVAEEKFCETTIGCKDKTLGPLLHALLQTP 359 (492)
Q Consensus 281 ~~PI~~av~~Il~~-~~~p~~~i~~L~~~~~~~~~~~~~~~~l~gp~~a~ev~~~~~~~~~ia~~~~~~~~~~~~~f~~~ 359 (492)
+.+++.....+-.. ...+.+.+...+.. .+..+++||++|.|++.+.|+.+++++.+.+..+.++++|+++
T Consensus 99 ~~~vv~~~nGi~~~~~~~~~~~l~~~~~~--------~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 170 (326)
T PRK14620 99 NTPILICSKGIEKSSLKFPSEIVNEILPN--------NPIAILSGPSFAKEIAEKLPCSIVLAGQNETLGSSLISKLSNE 170 (326)
T ss_pred CCEEEEEEcCeeCCCCccHHHHHHHHcCC--------CceEeecCCcHHHHHHcCCCcEEEEecCCHHHHHHHHHHHCCC
Confidence 45565555555222 22456666654421 1356889999999999999999999999888889999999999
Q ss_pred CeEEEEcCCchhHhHhhhhHHHHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHhCCCC--Cccccccccccceeee
Q psy14065 360 NFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGA--KSATFFESCGVADLIT 437 (492)
Q Consensus 360 ~f~~~~~~D~~gve~~galKNv~Ai~~Gi~~g~~~g~N~~aal~~~g~~E~~~~~~~~~~g~--~~~t~~~~~g~gDl~~ 437 (492)
+|+++.++|++|+||++++||++|+++|+.+|+.+|+|+++++++++++||.++++++ |+ +++|++|++|+||+++
T Consensus 171 ~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~--G~~~~~~~~~gl~g~gdl~~ 248 (326)
T PRK14620 171 NLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAK--NGSIDLNTLIGPSCLGDLIL 248 (326)
T ss_pred CeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHh--CCCCCcchhhccchhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999998 65 8999999999999999
Q ss_pred cccC--CccHHHHHHHHhcCCCHHHHHHHhcCCceecchHhHHHHHHHHHhcCCC
Q psy14065 438 TCYG--GRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNME 490 (492)
Q Consensus 438 T~~~--~rn~~~g~~~~~~g~~~~~~~~~~~~~~~~eG~~t~~~v~~~~~~~~~~ 490 (492)
||++ ||||+||+.++ +|..++++.++. ++++||+.+++.+++++++++++
T Consensus 249 t~~~~~~rN~~~G~~l~-~g~~~~d~~~~~--~~~vegi~~~~~v~~~a~~~~i~ 300 (326)
T PRK14620 249 TCTTLHSRNMSFGFKIG-NGFNINQILSEG--KSVIEGFSTVKPLISLAKKLNIE 300 (326)
T ss_pred eecCCCCCcHHHHHHHH-CCCCHHHHHHhC--CCEeecHHHHHHHHHHHHHhCCC
Confidence 9996 89999999998 899999998876 67899999999999999999875
No 18
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.97 E-value=2.1e-29 Score=256.27 Aligned_cols=168 Identities=29% Similarity=0.462 Sum_probs=161.6
Q ss_pred cchhhcCCCcHHHHhhccceEEEEeeCCCChHHHHHHHhCCCCeEEEEcCCchhHhHhhhhHHHHHHHHHHhhhcCCCcc
Q psy14065 318 KEAVLISSLTSSHVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDN 397 (492)
Q Consensus 318 ~~~~l~gp~~a~ev~~~~~~~~~ia~~~~~~~~~~~~~f~~~~f~~~~~~D~~gve~~galKNv~Ai~~Gi~~g~~~g~N 397 (492)
++++++||++|.|++++.|+.+++++.|.+..+.++++|++.+|++++++|++|+|+|++|||++||++|+++++++++|
T Consensus 105 ~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N 184 (308)
T PRK14619 105 PVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTN 184 (308)
T ss_pred ceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCcc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHhCCCCCccccccccccceeeecccC--CccHHHHHHHHhcCCCHHHHHHHhcCCceecchH
Q psy14065 398 TKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYG--GRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPF 475 (492)
Q Consensus 398 ~~aal~~~g~~E~~~~~~~~~~g~~~~t~~~~~g~gDl~~T~~~--~rn~~~g~~~~~~g~~~~~~~~~~~~~~~~eG~~ 475 (492)
++++++++++.||.+|++++ |.+++||++++|+||+++||++ +|||++|+.++ +|++++++.+++ ++++||+.
T Consensus 185 ~~~a~~~~~~~E~~~l~~~~--G~~~~t~~~~~g~gd~~~t~~~~~~rn~~~g~~l~-~g~~~~~~~~~~--~~~~eG~~ 259 (308)
T PRK14619 185 AKAALVTRALPEMIRVGTHL--GAQTETFYGLSGLGDLLATCTSPLSRNYQVGYGLA-QGKSLEQILAEL--EGTAEGVN 259 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHh--CCCccccccccchhhhheeecCCCCccHHHHHHHH-CCCCHHHHHHhc--CCEeecHH
Confidence 99999999999999999998 9999999999999999999999 99999999987 899999999987 68999999
Q ss_pred hHHHHHHHHHhcCCC
Q psy14065 476 TADEVNYMLKNKNME 490 (492)
Q Consensus 476 t~~~v~~~~~~~~~~ 490 (492)
+++.+++++++++++
T Consensus 260 ~~~~~~~~~~~~~~~ 274 (308)
T PRK14619 260 TANVLVQLAQQQNIA 274 (308)
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999999875
No 19
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.94 E-value=2.8e-27 Score=217.91 Aligned_cols=129 Identities=39% Similarity=0.552 Sum_probs=114.3
Q ss_pred CcccccccCcHHHHHHHHHcCCCCCCCCCCCCCCCeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEE
Q psy14065 1 MYVYEEMIDGKKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLS 80 (492)
Q Consensus 1 ~~~~~~~~~~~~~~~~in~~~~N~~ylp~i~l~~~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs 80 (492)
||.|+++ .++.|+++|+|++|+|++++|+++++|+|++++++++|+||++|||++++++++++++++++++++|+
T Consensus 27 l~~~~~~-----~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 27 LWGRDEE-----QIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp EETSCHH-----HHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred EEeccHH-----HHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence 6999876 69999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccceeccCCccccHHHHHHhHhCC-ceEEEeCcChHHHHhhcCCceEEEeecCcch
Q psy14065 81 LIKGFDRAEGGGIDLISHIITRNLKI-KMTVLMGANLAGEVAEEKFCETTIGCKDKTL 137 (492)
Q Consensus 81 ~~KGl~~~~~~t~~~~se~i~e~l~~-~~~vlsGPn~A~Ev~~~~pt~vvias~~~~~ 137 (492)
++||++. ++..++++++++.++. ++++++|||||.||++++||++++||.|++.
T Consensus 102 ~~KG~~~---~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~~ 156 (157)
T PF01210_consen 102 ATKGFEP---GTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGKPTAVVIASKNEEV 156 (157)
T ss_dssp TS-SEET---TEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT--EEEEEEESSHHH
T ss_pred ecCCccc---CCCccHHHHHHHHhhhcceEEeeCccHHHHHHcCCCeEEEEEeccccc
Confidence 9999987 8999999999999985 4999999999999999999999999999775
No 20
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.94 E-value=3e-26 Score=234.92 Aligned_cols=166 Identities=38% Similarity=0.543 Sum_probs=156.4
Q ss_pred chhhcCCCcHHHHhhccceEEEEeeCCCChHHHHHHHhCCCCeEEEEcCCchhHhHhhhhHHHHHHHHHHhhhcCCCccH
Q psy14065 319 EAVLISSLTSSHVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNT 398 (492)
Q Consensus 319 ~~~l~gp~~a~ev~~~~~~~~~ia~~~~~~~~~~~~~f~~~~f~~~~~~D~~gve~~galKNv~Ai~~Gi~~g~~~g~N~ 398 (492)
..++.||++|.++..+.++.+++++.|.+..+.++++|++.+|+++.++|++|+|||+++||++||++|+++++++++|+
T Consensus 129 ~~~~~gP~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~ 208 (328)
T PRK14618 129 VAVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNA 208 (328)
T ss_pred eEEEECccHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHhCCCCCccccccccccceeeecccC--CccHHHHHHHHhcCCCHHHHHHHhcCCceecchHh
Q psy14065 399 KAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYG--GRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFT 476 (492)
Q Consensus 399 ~aal~~~g~~E~~~~~~~~~~g~~~~t~~~~~g~gDl~~T~~~--~rn~~~g~~~~~~g~~~~~~~~~~~~~~~~eG~~t 476 (492)
++++++++++||..|++++ |.+++|+++++|+|||++||+| +|||++|+.++ +|+++++... ++++.||+.+
T Consensus 209 ~~~~~~~~~~E~~~la~~~--G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~-~g~~~~~~~~---~~~~~~g~kd 282 (328)
T PRK14618 209 KAALITRGLREMVRFGVAL--GAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIV-RGVDREHLEA---GGKVVEGLYT 282 (328)
T ss_pred HHHHHHHHHHHHHHHHHHh--CCCccchhcCcchhheeeEeccCCCccHHHHHHHh-CCCCHHHHHH---cCCEEecHHH
Confidence 9999999999999999998 9999999999999999999998 89999999887 6888876642 3789999999
Q ss_pred HHHHHHHHHhcCCC
Q psy14065 477 ADEVNYMLKNKNME 490 (492)
Q Consensus 477 ~~~v~~~~~~~~~~ 490 (492)
++.+++++++.+++
T Consensus 283 ~~~~~~la~~~~~~ 296 (328)
T PRK14618 283 VKALDAWAKAHGHD 296 (328)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999998864
No 21
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=1.9e-21 Score=198.27 Aligned_cols=250 Identities=18% Similarity=0.207 Sum_probs=215.3
Q ss_pred cHHHHHHHHHcCCCCCCCCCCC-C------CCCeEEecCHHHHhccCCEEEEecChH----------HHHHHHHHhhccC
Q psy14065 10 GKKLTEIINETHENVKYLPGHK-L------PPNVVAVPDVVEAAKDADILVFVVPHQ----------FIVRLCSQLLGKI 72 (492)
Q Consensus 10 ~~~~~~~in~~~~N~~ylp~i~-l------~~~I~at~dl~~al~~aDiIilaVPs~----------~~~~vl~~l~~~l 72 (492)
|++.++.|| ++.-|.|.|+++ | ..++++|+|.+++++++|++|||||++ ++..+.+.|.+++
T Consensus 32 d~~KV~~ln-~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~ 110 (414)
T COG1004 32 DESKVELLN-KGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEIL 110 (414)
T ss_pred CHHHHHHHh-CCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhc
Confidence 577899999 588999999995 2 234999999999999999999999874 8999999999999
Q ss_pred CCCCeEEEEEccceeccCCccccHHHHHHhHhC-CceEEEeCcChHHHHhh----cCCceEEEeecCcchHHHHHHHhcC
Q psy14065 73 KPDAVGLSLIKGFDRAEGGGIDLISHIITRNLK-IKMTVLMGANLAGEVAE----EKFCETTIGCKDKTLGPLLHALLQT 147 (492)
Q Consensus 73 ~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~-~~~~vlsGPn~A~Ev~~----~~pt~vvias~~~~~~~~v~~lf~~ 147 (492)
++.+ +.+.|++.|+ +|.+.+-+.+.+... ..+.+.+.|.|.+|... -.|..++++..++...+.++++|..
T Consensus 111 ~~~~--vvV~KSTVPv--Gt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~Av~D~~~PdRIViG~~~~~a~~~~~ely~~ 186 (414)
T COG1004 111 DGKA--VVVIKSTVPV--GTTEEVRAKIREENSGKDFEVASNPEFLREGSAVYDFLYPDRIVIGVRSERAAAVLRELYAP 186 (414)
T ss_pred CCCe--EEEEcCCCCC--CchHHHHHHHHhhcccCCceEecChHHhcCcchhhhccCCCeEEEccCChhHHHHHHHHHhh
Confidence 8776 5689999997 888888888877764 46899999999999988 8899999999998888999999954
Q ss_pred C--CceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHHHHHHHHHCCCCCccccccccccchhh
Q psy14065 148 P--NFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLI 225 (492)
Q Consensus 148 ~--~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~ 225 (492)
. .=-+..-+|+..+|+. +|..|+..|.....+|||..+|+.. |+|.+.+.. |+|
T Consensus 187 ~~~~~~p~l~t~~~~AE~I-----------------KyaaNafLAtKIsFiNEia~ice~~--g~D~~~V~~--gIG--- 242 (414)
T COG1004 187 FLRQDVPILFTDLREAELI-----------------KYAANAFLATKISFINEIANICEKV--GADVKQVAE--GIG--- 242 (414)
T ss_pred hhhcCCCEEEecchHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHh--CCCHHHHHH--HcC---
Confidence 2 2235667899999996 9999999999999999999999999 999999998 774
Q ss_pred hhccCCCCHHHHHHHHhCCCChHHHHHHhcCCceeecchhHHHHHHHHHhcCCCCCCchhhhhHHhhcCCCChHHHHHHH
Q psy14065 226 TTCYGGRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQQFIDAI 305 (492)
Q Consensus 226 ~Tc~s~RN~~~G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~~l~~~~~l~~~~PI~~av~~Il~~~~~p~~~i~~L 305 (492)
-+.|+|..+.++|..+. |.|+ +++++++...+++++. +.+|++++.+++.. .+..+++.+
T Consensus 243 ------lD~RIG~~fl~aG~GyG--------GsCf--PKD~~AL~~~a~~~~~--~~~ll~avv~vN~~--qk~~~~~~i 302 (414)
T COG1004 243 ------LDPRIGNHFLNAGFGYG--------GSCF--PKDTKALIANAEELGY--DPNLLEAVVEVNER--RKDKLAEKI 302 (414)
T ss_pred ------CCchhhHhhCCCCCCCC--------CcCC--cHhHHHHHHHHHhcCC--chHHHHHHHHHHHH--HHHHHHHHH
Confidence 79999999999998887 9999 9999999999999988 48999999999544 455555555
Q ss_pred hcC
Q psy14065 306 REH 308 (492)
Q Consensus 306 ~~~ 308 (492)
.++
T Consensus 303 ~~~ 305 (414)
T COG1004 303 LNH 305 (414)
T ss_pred HHh
Confidence 443
No 22
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.84 E-value=3.3e-20 Score=189.25 Aligned_cols=167 Identities=38% Similarity=0.543 Sum_probs=158.0
Q ss_pred chhhcCCCcHHHHhhccceEEEEeeCCCChHHHHHHHhCCCCeEEEEcCCchhHhHhhhhHHHHHHHHHHhhhcCCCccH
Q psy14065 319 EAVLISSLTSSHVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNT 398 (492)
Q Consensus 319 ~~~l~gp~~a~ev~~~~~~~~~ia~~~~~~~~~~~~~f~~~~f~~~~~~D~~gve~~galKNv~Ai~~Gi~~g~~~g~N~ 398 (492)
..++.||+++.++..+.++.+.+++.+.+..+.++++|++.+|+++.++|+.|+||++++||++++++|+..++++++|.
T Consensus 130 ~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~ 209 (325)
T PRK00094 130 IAVLSGPSFAKEVARGLPTAVVIASTDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNA 209 (325)
T ss_pred eEEEECccHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccH
Confidence 46899999999999999999999988888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHhCCCCCccccccccccceeeecccC--CccHHHHHHHHhcCCCHHHHHHHhcCCceecchHh
Q psy14065 399 KAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYG--GRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFT 476 (492)
Q Consensus 399 ~aal~~~g~~E~~~~~~~~~~g~~~~t~~~~~g~gDl~~T~~~--~rn~~~g~~~~~~g~~~~~~~~~~~~~~~~eG~~t 476 (492)
..+++.++++|+..+++++ |.+++++++++|.||+++||.+ +||+.+|..++ +|.+.+++.+++ +++.||...
T Consensus 210 ~~~~~~~~~~E~~~la~~~--G~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~-~~~~~~~~~~~~--~~~~~~~kd 284 (325)
T PRK00094 210 RAALITRGLAEITRLGVAL--GANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALG-QGKSLEEALAEI--GMVAEGVRT 284 (325)
T ss_pred HHHHHHHHHHHHHHHHHHh--CCChhhhhcccHhhhhhhhccCCCCccHHHHHHHH-CCCCHHHHHHHc--CCEeecHHH
Confidence 9999999999999999998 9999999999999999999999 89999999887 688888887776 699999999
Q ss_pred HHHHHHHHHhcCCC
Q psy14065 477 ADEVNYMLKNKNME 490 (492)
Q Consensus 477 ~~~v~~~~~~~~~~ 490 (492)
.+.+++++++++++
T Consensus 285 ~~~~~~~a~~~~~~ 298 (325)
T PRK00094 285 AKAVYELAKKLGVE 298 (325)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999999875
No 23
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.63 E-value=1.7e-15 Score=160.14 Aligned_cols=246 Identities=18% Similarity=0.240 Sum_probs=186.5
Q ss_pred HHHHHHHHHcCCCCCCCCCCCC-------CCCeEEecCHHHHhccCCEEEEecChH----------HHHHHHHHhhccCC
Q psy14065 11 KKLTEIINETHENVKYLPGHKL-------PPNVVAVPDVVEAAKDADILVFVVPHQ----------FIVRLCSQLLGKIK 73 (492)
Q Consensus 11 ~~~~~~in~~~~N~~ylp~i~l-------~~~I~at~dl~~al~~aDiIilaVPs~----------~~~~vl~~l~~~l~ 73 (492)
.+.++.++ .+.+|.|.|+++. ..++++++|++++++++|+||+|||++ ++.++++.+.++++
T Consensus 33 ~~~v~~l~-~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~ 111 (411)
T TIGR03026 33 QEKVDKLN-KGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLR 111 (411)
T ss_pred HHHHHHhh-cCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcC
Confidence 34688887 4678888888751 234889999999999999999999976 58899999999998
Q ss_pred CCCeEEEEEccceeccCCccccHH-HHHHhHhC----CceEEEeCcChHHHHhh----cCCceEEEeecCcchHHHHHHH
Q psy14065 74 PDAVGLSLIKGFDRAEGGGIDLIS-HIITRNLK----IKMTVLMGANLAGEVAE----EKFCETTIGCKDKTLGPLLHAL 144 (492)
Q Consensus 74 ~~~~iIs~~KGl~~~~~~t~~~~s-e~i~e~l~----~~~~vlsGPn~A~Ev~~----~~pt~vvias~~~~~~~~v~~l 144 (492)
+++++|..+ ++.+ +|.+.+. +++++..+ ..+.+.++|.++.+... ..|+.++++ .+++..+.++++
T Consensus 112 ~g~lvi~~S-Tv~p---gt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~~G~~~~~~~~~~~iv~G-~~~~~~~~~~~l 186 (411)
T TIGR03026 112 KGATVVLES-TVPP---GTTEEVVKPILERASGLKLGEDFYLAYNPEFLREGNAVHDLLNPDRIVGG-ETEEAGEAVAEL 186 (411)
T ss_pred CCCEEEEeC-cCCC---CchHHHHHHHHHhhcCCCCCCCceEEECCCcCCCCChhhhhcCCCEEEEe-CCHHHHHHHHHH
Confidence 888766544 5555 5655554 45554332 34678999999998875 667778777 578888999999
Q ss_pred hcCCC-ceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHHHHHHHHHCCCCCccccccccccch
Q psy14065 145 LQTPN-FRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVAD 223 (492)
Q Consensus 145 f~~~~-f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGD 223 (492)
|+.-. .+++...|+..+|++ ++-.|+..+....+++||.+|++++ |.|++++....+.+
T Consensus 187 ~~~~~~~~~~~~~~~~~Ae~~-----------------Kl~~N~~~a~~ia~~nE~~~la~~~--GiD~~~v~~~~~~~- 246 (411)
T TIGR03026 187 YAPIIEDGPVLVTSIETAEMI-----------------KLAENTFRAVKIAFANELARICEAL--GIDVYEVIEAAGTD- 246 (411)
T ss_pred HHHhccCCCEEcCCHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHh--CCCHHHHHHHhCCC-
Confidence 98665 468888999999998 6667777888889999999999999 99999999865552
Q ss_pred hhhhccCCCCHHHHHHHHhCCCChHHHHHHhcCCceeecchhHHHHHHHHHhcCCCCCCchhhhhHHhhcCCCChHHHHH
Q psy14065 224 LITTCYGGRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQQFID 303 (492)
Q Consensus 224 l~~Tc~s~RN~~~G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~~l~~~~~l~~~~PI~~av~~Il~~~~~p~~~i~ 303 (492)
.| +|...-.+|-++. |.|+ +++...+.+.++++++. +|++.++.+++ ..-|+.+++
T Consensus 247 -------~~---i~~~~~~pg~g~g--------g~c~--~KD~~~l~~~a~~~g~~--~~l~~~~~~~N--~~~~~~~~~ 302 (411)
T TIGR03026 247 -------PR---IGFNFLNPGPGVG--------GHCI--PKDPLALIYKAKELGYN--PELIEAAREIN--DSQPDYVVE 302 (411)
T ss_pred -------CC---CCCCcCCCCCCCC--------CCch--hhhHHHHHHHHHhcCCC--cHHHHHHHHHH--HHhHHHHHH
Confidence 22 2222223343333 6777 89999999999999984 99999999995 444555665
Q ss_pred HHh
Q psy14065 304 AIR 306 (492)
Q Consensus 304 ~L~ 306 (492)
.+.
T Consensus 303 ~~~ 305 (411)
T TIGR03026 303 KIL 305 (411)
T ss_pred HHH
Confidence 554
No 24
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.55 E-value=4e-14 Score=151.59 Aligned_cols=250 Identities=16% Similarity=0.183 Sum_probs=195.5
Q ss_pred cHHHHHHHHHcCCCCCCCCCCC-C-----CCCeEEecCHHHHhccCCEEEEecChH---------------HHHHHHHHh
Q psy14065 10 GKKLTEIINETHENVKYLPGHK-L-----PPNVVAVPDVVEAAKDADILVFVVPHQ---------------FIVRLCSQL 68 (492)
Q Consensus 10 ~~~~~~~in~~~~N~~ylp~i~-l-----~~~I~at~dl~~al~~aDiIilaVPs~---------------~~~~vl~~l 68 (492)
++++++.+|.. ..+.+.|++. + ..++++|+|..+++++||++|+|||++ ++.+++++|
T Consensus 35 ~~~~v~~l~~g-~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i 113 (473)
T PLN02353 35 SVPRIDAWNSD-QLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMI 113 (473)
T ss_pred CHHHHHHHHcC-CCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHH
Confidence 46789999964 4566777773 2 236999999999999999999999532 789999999
Q ss_pred hccCCCCCeEEEEEccceeccCCccccHHHHHHhHh-CCceEEEeCcChHHHHhh----cCCceEEEeecCcc----hHH
Q psy14065 69 LGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNL-KIKMTVLMGANLAGEVAE----EKFCETTIGCKDKT----LGP 139 (492)
Q Consensus 69 ~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l-~~~~~vlsGPn~A~Ev~~----~~pt~vvias~~~~----~~~ 139 (492)
.+++++++ +.+.|.+.++ +|.+.+...+.+.. +..+.+.+.|.|..|... ..|..+++++.+.+ ..+
T Consensus 114 ~~~l~~~~--lVv~~STvp~--Gtt~~~~~~l~~~~~g~~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~ 189 (473)
T PLN02353 114 ADVSKSDK--IVVEKSTVPV--KTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQ 189 (473)
T ss_pred HhhCCCCc--EEEEeCCCCC--ChHHHHHHHHHhhCCCCCeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHH
Confidence 99998777 4577888775 66666666666543 346889999999998875 67888999987643 467
Q ss_pred HHHHHhcCCC-ceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHHHHHHHHHCCCCCccccccc
Q psy14065 140 LLHALLQTPN-FRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFES 218 (492)
Q Consensus 140 ~v~~lf~~~~-f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~gl 218 (492)
.++++|+.-. -.++..+|+..+|++ ++-.|+.-++-...+|||.++|+++ |.|...+...
T Consensus 190 ~~~~lY~~~~~~~~i~~~s~~~AE~~-----------------K~~eN~~ra~~Iaf~NEla~lce~~--giD~~eV~~~ 250 (473)
T PLN02353 190 ALKDVYAHWVPEERIITTNLWSAELS-----------------KLAANAFLAQRISSVNAMSALCEAT--GADVSQVSHA 250 (473)
T ss_pred HHHHHHHHhhcCCCEEecCHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 7888886442 146677999999998 9999999999999999999999999 9999888874
Q ss_pred cccchhhhhccCCCCHHHHHHHHhCCCChHHHHHHhcCCceeecchhHHHHHHHHHhcCCCCCCchhhhhHHhhcCCCCh
Q psy14065 219 CGVADLITTCYGGRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKP 298 (492)
Q Consensus 219 aGlGDl~~Tc~s~RN~~~G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~~l~~~~~l~~~~PI~~av~~Il~~~~~p 298 (492)
++. +.|+|..+.++|-.+. |+|+ +++...+...+++++.++.++++.++.+++ ..-|
T Consensus 251 ~~~-----------d~rig~~~l~PG~G~G--------G~Cl--pkD~~~L~~~a~~~g~~~~~~l~~~~~~iN--~~~~ 307 (473)
T PLN02353 251 VGK-----------DSRIGPKFLNASVGFG--------GSCF--QKDILNLVYICECNGLPEVAEYWKQVIKMN--DYQK 307 (473)
T ss_pred hCC-----------CCcCCCCCCCCCCCCC--------Ccch--hhhHHHHHHHHHHcCCchHHHHHHHHHHHH--HhhH
Confidence 443 4446666667777775 8999 899999999999998843377999999885 3446
Q ss_pred HHHHHHHh
Q psy14065 299 QQFIDAIR 306 (492)
Q Consensus 299 ~~~i~~L~ 306 (492)
..+++.+.
T Consensus 308 ~~vv~~~~ 315 (473)
T PLN02353 308 SRFVNRVV 315 (473)
T ss_pred HHHHHHHH
Confidence 66666554
No 25
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.40 E-value=6.5e-12 Score=126.84 Aligned_cols=243 Identities=17% Similarity=0.147 Sum_probs=169.4
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCCeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCc
Q psy14065 13 LTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGG 92 (492)
Q Consensus 13 ~~~~in~~~~N~~ylp~i~l~~~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t 92 (492)
..+.++..+.+.. +-.....+..++|.+++ +++|+||+|||++.++++++++++++.++.+||++..|+...
T Consensus 35 ~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~-~~~d~vila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~---- 106 (304)
T PRK06522 35 HLDALNENGLRLE---DGEITVPVLAADDPAEL-GPQDLVILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGHL---- 106 (304)
T ss_pred HHHHHHHcCCccc---CCceeecccCCCChhHc-CCCCEEEEecccccHHHHHHHHhhhcCCCCEEEEecCCCCcH----
Confidence 5677776443221 11112233456677665 899999999999999999999999998888999999998752
Q ss_pred cccHHHHHHhHhCC-c--------eEEEeCcChHHHHhhcCCceEEEeecCc--chHHHHHHHhcCCCceEEEcCCcchh
Q psy14065 93 IDLISHIITRNLKI-K--------MTVLMGANLAGEVAEEKFCETTIGCKDK--TLGPLLHALLQTPNFRVSVVDDVDAV 161 (492)
Q Consensus 93 ~~~~se~i~e~l~~-~--------~~vlsGPn~A~Ev~~~~pt~vvias~~~--~~~~~v~~lf~~~~f~v~~~~D~~Gv 161 (492)
+.+.+.++. + .+.+.+|++......+ .++++..+. +..+.+.++|+...+.++.++|+.+.
T Consensus 107 -----~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g---~~~ig~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~ 178 (304)
T PRK06522 107 -----EELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGG---RLKIGEPDGESAAAEALADLLNAAGLDVEWSPDIRTE 178 (304)
T ss_pred -----HHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCC---CEEEeCCCCCcHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 455555542 1 2347899988877654 377776554 33778999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHhhhcCCCc----ChHHHHHHHHHHHHHHHHHHHCCCCCccccccccccchhhhhccC--CCCH-
Q psy14065 162 EICGALKNIVACGAGFVDGLGLGD----NTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYG--GRNR- 234 (492)
Q Consensus 162 El~galKNv~AIa~Gi~~gl~~g~----N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s--~RN~- 234 (492)
+|.-.+.|+..-..+.+.+...|. +....++.+.++|+..+++++ |.++..- -+-+.+.+... ..|+
T Consensus 179 ~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~--G~~~~~~----~~~~~~~~~~~~~~~~~s 252 (304)
T PRK06522 179 IWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAE--GVHLSVE----EVREYVRQVIQKTAANTS 252 (304)
T ss_pred HHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHc--CCCCChH----HHHHHHHHHhhccCCCCc
Confidence 999999999888888888776553 667889999999999999999 8765321 11222222111 1221
Q ss_pred HHHHHHHhCCCChHHHHHHhcCCceeecchhHHHHHHHHHhcCCCCCCchhhhhHHhhc
Q psy14065 235 KVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICI 293 (492)
Q Consensus 235 ~~G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~~l~~~~~l~~~~PI~~av~~Il~ 293 (492)
+.=+.+-+ |.+. |=-.-...+.++++++|++ +|....+|..+.
T Consensus 253 Sm~~D~~~-gr~t-------------Eid~i~G~~v~~a~~~gv~--~P~~~~l~~~~~ 295 (304)
T PRK06522 253 SMLQDLEA-GRPT-------------EIDAIVGYVLRRGRKHGIP--TPLNDALYGLLK 295 (304)
T ss_pred hHHHHHHc-CCCc-------------ccchhccHHHHHHHHcCCC--CcHHHHHHHHHH
Confidence 22233332 3322 1112234578999999994 999999998864
No 26
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.38 E-value=1.7e-12 Score=127.40 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=118.7
Q ss_pred CCCCCCCCCCCCCeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHh
Q psy14065 23 NVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITR 102 (492)
Q Consensus 23 N~~ylp~i~l~~~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e 102 (492)
|+.+++.+..+.++..++|++++++++|+||+|||++.+++++++++++++ +++|||+++|++. +.|++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~~~~v~~~l~~~~~-~~~vis~~~gi~~----------~~l~~ 109 (245)
T PRK07634 41 NVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSAHEELLAELSPLLS-NQLVVTVAAGIGP----------SYLEE 109 (245)
T ss_pred CHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHHHHHHHHHHHhhcc-CCEEEEECCCCCH----------HHHHH
Confidence 333344443344577788999999999999999999999999999999886 6799999999997 67888
Q ss_pred HhCC-ceEEEeCcChHHHHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhc
Q psy14065 103 NLKI-KMTVLMGANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGL 181 (492)
Q Consensus 103 ~l~~-~~~vlsGPn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl 181 (492)
.++. ..++++|||++.++.++.|+.++..+.+++..+.++++|+.-.-.+++.++.. +.++-.+
T Consensus 110 ~~~~~~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~e~~~---------~~~~a~~------ 174 (245)
T PRK07634 110 RLPKGTPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQLCTEEEV---------HQLTAVT------ 174 (245)
T ss_pred HcCCCCeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCEEEECHHHc---------chHHhhh------
Confidence 8864 46779999999999999987776667788888999999988776666554421 1111111
Q ss_pred CCCcChHHHHHHHHHHHHHHHHHHHCCCCCccccc
Q psy14065 182 GLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFF 216 (492)
Q Consensus 182 ~~g~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~ 216 (492)
+.|+ |++...+..|.+.+... |-++++-.
T Consensus 175 gs~p----a~~~~~~~a~~~~~~~~--Gl~~~~a~ 203 (245)
T PRK07634 175 GSAP----AFLYYFAESLIEATKSY--GVDEETAK 203 (245)
T ss_pred cchH----HHHHHHHHHHHHHHHHc--CCCHHHHH
Confidence 2233 34445555666667777 66655433
No 27
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.37 E-value=2.8e-12 Score=134.64 Aligned_cols=240 Identities=17% Similarity=0.162 Sum_probs=175.9
Q ss_pred cHHHHHHHHHcCCCCCCCCCCCC-----CCCeEEecCHHHHhccCCEEEEecChH-----------HHHHHHHHhhccCC
Q psy14065 10 GKKLTEIINETHENVKYLPGHKL-----PPNVVAVPDVVEAAKDADILVFVVPHQ-----------FIVRLCSQLLGKIK 73 (492)
Q Consensus 10 ~~~~~~~in~~~~N~~ylp~i~l-----~~~I~at~dl~~al~~aDiIilaVPs~-----------~~~~vl~~l~~~l~ 73 (492)
+++.++.++. +.-+.|.|++.. ..++++++|..++++++|+||+|||++ +++++++.+.+ ++
T Consensus 31 d~~kv~~l~~-g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~ 108 (388)
T PRK15057 31 LPSRVAMLND-RISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-IN 108 (388)
T ss_pred CHHHHHHHHc-CCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cC
Confidence 3557888884 566778887641 235677788888899999999999975 88899999987 56
Q ss_pred CCCeEEEEEccceeccCCccccHHHHHHhHhCCceEEEeCcChHHHHhh----cCCceEEEeecCcchHHHHHHHhcCCC
Q psy14065 74 PDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANLAGEVAE----EKFCETTIGCKDKTLGPLLHALLQTPN 149 (492)
Q Consensus 74 ~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~vlsGPn~A~Ev~~----~~pt~vvias~~~~~~~~v~~lf~~~~ 149 (492)
+++++ +.++..++ +|.+.+.+.+.+ ..+.++|.|+.|... ..|..+++++.+. .++.+.++|..+.
T Consensus 109 ~g~lV--V~~STv~p--gtt~~l~~~~~~-----~~v~~~PE~l~~G~a~~d~~~p~rvv~G~~~~-~~~~~~~~l~~~~ 178 (388)
T PRK15057 109 PYAVM--VIKSTVPV--GFTAAMHKKYRT-----ENIIFSPEFLREGKALYDNLHPSRIVIGERSE-RAERFAALLQEGA 178 (388)
T ss_pred CCCEE--EEeeecCC--chHHHHHHHhhc-----CcEEECcccccCCcccccccCCCEEEEEcCcH-HHHHHHHHHHhhh
Confidence 66644 56666664 555444433322 245679999988866 6677888887654 4566667664332
Q ss_pred c---eEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHHHHHHHHHCCCCCccccccccccchhhh
Q psy14065 150 F---RVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLIT 226 (492)
Q Consensus 150 f---~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~ 226 (492)
+ .+.+..|+..+|++ ++-.|+.-++....+|||.+||+++ |.|++.+....|.
T Consensus 179 ~~~~~~~~~~~~~~AE~~-----------------Kl~~N~~~a~~Ia~~NE~a~lae~~--GiD~~eV~~a~~~----- 234 (388)
T PRK15057 179 IKQNIPTLFTDSTEAEAI-----------------KLFANTYLAMRVAYFNELDSYAESL--GLNTRQIIEGVCL----- 234 (388)
T ss_pred hcCCCceeeCCHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHh--CcCHHHHHHHhcC-----
Confidence 2 12246788888987 9999999999999999999999999 9999999884333
Q ss_pred hccCCCCHHHHHHHHhCCCChHHHHHHhcCCceeecchhHHHHHHHHHhcCCCCCCchhhhhHHhhcCCCChHHHHHHHh
Q psy14065 227 TCYGGRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQQFIDAIR 306 (492)
Q Consensus 227 Tc~s~RN~~~G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~~l~~~~~l~~~~PI~~av~~Il~~~~~p~~~i~~L~ 306 (492)
+.|+|..+.++|-.+. |+|+ +++...+...+ .++ ++||++++.+++ ..-|+.+++.+.
T Consensus 235 ------d~ri~~~~l~pG~G~G--------G~Cl--pkD~~~L~~~~--~~~--~~~l~~~~~~~N--~~~~~~~~~~~~ 292 (388)
T PRK15057 235 ------DPRIGNHYNNPSFGYG--------GYCL--PKDTKQLLANY--QSV--PNNLISAIVDAN--RTRKDFIADAIL 292 (388)
T ss_pred ------CCCCCCccCCCCCCCC--------CcCh--hhhHHHHHHhc--cCC--CcHHHHHHHHHH--HHhHHHHHHHHH
Confidence 4458877666777776 8999 88888886544 444 479999999994 455777777665
Q ss_pred c
Q psy14065 307 E 307 (492)
Q Consensus 307 ~ 307 (492)
+
T Consensus 293 ~ 293 (388)
T PRK15057 293 S 293 (388)
T ss_pred H
Confidence 4
No 28
>KOG2666|consensus
Probab=99.29 E-value=8.3e-12 Score=123.51 Aligned_cols=295 Identities=16% Similarity=0.156 Sum_probs=208.3
Q ss_pred HHHHHHHcCCCCCCCCCCCC------CCCeEEecCHHHHhccCCEEEEecCh---------------HHHHHHHHHhhcc
Q psy14065 13 LTEIINETHENVKYLPGHKL------PPNVVAVPDVVEAAKDADILVFVVPH---------------QFIVRLCSQLLGK 71 (492)
Q Consensus 13 ~~~~in~~~~N~~ylp~i~l------~~~I~at~dl~~al~~aDiIilaVPs---------------~~~~~vl~~l~~~ 71 (492)
.+...|+ .+-|.|.|++.. ..|+.+++|.+.++.+||+||+.|.+ +|+++..+.|.+.
T Consensus 38 ri~~wns-d~lpiyepgldevv~~crgknlffstdiekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~ 116 (481)
T KOG2666|consen 38 RINAWNS-DKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADV 116 (481)
T ss_pred HhhcccC-CCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHh
Confidence 4555563 557899999853 67999999999999999999999844 3899999999887
Q ss_pred CCCCCeEEEEEccceeccCCccccHHHHHHhHhC-----CceEEEeCcChHHHHhh----cCCceEEEeecCc-chHHHH
Q psy14065 72 IKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLK-----IKMTVLMGANLAGEVAE----EKFCETTIGCKDK-TLGPLL 141 (492)
Q Consensus 72 l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~-----~~~~vlsGPn~A~Ev~~----~~pt~vvias~~~-~~~~~v 141 (492)
-..++ |.+-|...|. .+ .|.|..+|. .++-+||.|.|.+|.-. -.|..+.|++++. +-.+.+
T Consensus 117 s~~~k--ivvekstvpv--~a----aesi~~il~~n~~~i~fqilsnpeflaegtaikdl~npdrvligg~etpeg~~av 188 (481)
T KOG2666|consen 117 SVSDK--IVVEKSTVPV--KA----AESIEKILNHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAV 188 (481)
T ss_pred ccCCe--EEEeeccccc--hH----HHHHHHHHhcCCCCceeEeccChHHhcccchhhhhcCCceEEECCCCChhHHHHH
Confidence 76666 5688998884 23 355555553 35899999999999876 6799999998774 333333
Q ss_pred ---HHHhcCCC-ceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHHHHHHHHHCCCCCcccccc
Q psy14065 142 ---HALLQTPN-FRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFE 217 (492)
Q Consensus 142 ---~~lf~~~~-f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~g 217 (492)
..++...- -.-.+++.....|+. ++..|++.|--..++|-|+.+|++- |++.+.+.-
T Consensus 189 ~~l~~vyehwvp~~~iittntwssels-----------------klaanaflaqrissins~salceat--gadv~eva~ 249 (481)
T KOG2666|consen 189 QALKDVYEHWVPREQIITTNTWSSELS-----------------KLAANAFLAQRISSINSMSALCEAT--GADVSEVAY 249 (481)
T ss_pred HHHHHHHHhhCcccceeeccccHHHHH-----------------HHHHHHHHHHHHhhhHHHHHHHHhc--CCCHHHHHH
Confidence 33343321 123466778888997 8999999999999999999999999 999977665
Q ss_pred ccccchhhhhccCCCCHHHHHHHHhCCCChHHHHHHhcCCceeecchhHHHHHHHHHhcCCCCCCchhhhhHHhhcCCC-
Q psy14065 218 SCGVADLITTCYGGRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEM- 296 (492)
Q Consensus 218 laGlGDl~~Tc~s~RN~~~G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~~l~~~~~l~~~~PI~~av~~Il~~~~- 296 (492)
--| -+.|+|..+.+....+. |.|+ -+++-.+..+++.+|+.+-...+..|.+++.=.+
T Consensus 250 avg-----------~d~rig~kfl~asvgfg--------gscf--qkdilnlvyice~lnlpeva~ywqqvi~~ndyqkr 308 (481)
T KOG2666|consen 250 AVG-----------TDSRIGSKFLNASVGFG--------GSCF--QKDILNLVYICECLNLPEVAEYWQQVIKINDYQKR 308 (481)
T ss_pred Hhc-----------ccccccHHHhhcccCcC--------chhH--HHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHH
Confidence 323 48889999988655554 7888 5788888999999998655667777777763322
Q ss_pred C-hHHHHHHHhcCCCCCCcccccchhhcC----------CCcHHHHhhccceE-EEEeeCCCCh-HHHHHHHhCCCCe
Q psy14065 297 K-PQQFIDAIREHPDHKVSTAQKEAVLIS----------SLTSSHVAEEKFCE-TTIGCKDKTL-GPLLHALLQTPNF 361 (492)
Q Consensus 297 ~-p~~~i~~L~~~~~~~~~~~~~~~~l~g----------p~~a~ev~~~~~~~-~~ia~~~~~~-~~~~~~~f~~~~f 361 (492)
. ...+++.+.+.... ++.++|+- -.-|-+|+++.... +-+.-.|+.. -+.+++-++.+.|
T Consensus 309 rfa~rii~smFNTVsd-----KKIAIlGFAFKKdTgdtREt~AI~Vck~Lled~A~LsIYDPqV~~eQI~~DLs~~~~ 381 (481)
T KOG2666|consen 309 RFANRIISSMFNTVSD-----KKIAILGFAFKKDTGDTRETPAIDVCKGLLEDKARLSIYDPQVTEEQIQRDLSMPKF 381 (481)
T ss_pred HHHHHHHHHHhhcccc-----ceEEEEEeEeecCCCCcccCcHHHHHHHHhhccceeeecCCCCCHHHHHHhcccccc
Confidence 2 45666666665531 22233321 12355677665544 3444455554 3466677777766
No 29
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.25 E-value=2.8e-10 Score=117.28 Aligned_cols=185 Identities=16% Similarity=0.204 Sum_probs=133.7
Q ss_pred HHHHHHcCCCCCCCCCC---CCCCCeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccC
Q psy14065 14 TEIINETHENVKYLPGH---KLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEG 90 (492)
Q Consensus 14 ~~~in~~~~N~~ylp~i---~l~~~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~ 90 (492)
.+.+++.+......++. ..+.+++++++. +++.++|+||+|||++.++++++++.++++++++|++++.|+..
T Consensus 37 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~--- 112 (341)
T PRK08229 37 GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRN--- 112 (341)
T ss_pred HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCc---
Confidence 45666554433332222 224567788887 56799999999999999999999999999888999999999875
Q ss_pred CccccHHHHHHhHhCC-c-------e-EEEeCcChHHHHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEcCCcchh
Q psy14065 91 GGIDLISHIITRNLKI-K-------M-TVLMGANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAV 161 (492)
Q Consensus 91 ~t~~~~se~i~e~l~~-~-------~-~vlsGPn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~~D~~Gv 161 (492)
++.+++.++. . + +++.||.++.....+. ++++. .+..+.++++|+..+++++.++|+.+.
T Consensus 113 ------~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~---l~~~~--~~~~~~~~~~l~~~g~~~~~~~di~~~ 181 (341)
T PRK08229 113 ------ADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGA---LAIEA--SPALRPFAAAFARAGLPLVTHEDMRAV 181 (341)
T ss_pred ------HHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCc---eEecC--CchHHHHHHHHHhcCCCceecchhHHH
Confidence 2556666542 1 1 2577888876444443 45543 345688999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHhhhcCCC----cChHHHHHHHHHHHHHHHHHHHCCCCCccccc
Q psy14065 162 EICGALKNIVACGAGFVDGLGLG----DNTKAAVIRLGLMEMVKFTELFYPGAKSATFF 216 (492)
Q Consensus 162 El~galKNv~AIa~Gi~~gl~~g----~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~ 216 (492)
++.-.+.|++. +...+.+..+| +.-.-.++...+.|...++++. |-+++.+.
T Consensus 182 ~w~Kl~~N~~~-~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a~--Gi~~~~~~ 237 (341)
T PRK08229 182 QWAKLLLNLNN-AVNALSGLPLKEELAQRSYRRCLALAQREALRVLKAA--GIRPARLT 237 (341)
T ss_pred HHHHHHHHhcc-HHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHHc--CCCccccC
Confidence 99999999743 32322233322 2234468889999999999999 88887654
No 30
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.18 E-value=6.2e-10 Score=111.74 Aligned_cols=244 Identities=16% Similarity=0.131 Sum_probs=168.6
Q ss_pred HHHHHHHcCCCCCCC-CCCCCCCCeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCC
Q psy14065 13 LTEIINETHENVKYL-PGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGG 91 (492)
Q Consensus 13 ~~~~in~~~~N~~yl-p~i~l~~~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~ 91 (492)
..+.|++++-..... .+...+ .+.+++|+++ +.+.|+||+|||+++++++++++++++.++.+||++-.|+...
T Consensus 25 ~~~~i~~~Gl~i~~~~~~~~~~-~~~~~~~~~~-~~~~D~iiv~vKs~~~~~~l~~l~~~l~~~~~iv~~qNG~g~~--- 99 (293)
T TIGR00745 25 QLEALNQEGLRIVSLGGEFQFR-PVSAATSPEE-LPPADLVIITVKAYQTEEAAALLLPLIGKNTKVLFLQNGLGHE--- 99 (293)
T ss_pred HHHHHHHCCcEEEecCCcEEEc-ccccccChhh-cCCCCEEEEeccchhHHHHHHHhHhhcCCCCEEEEccCCCCCH---
Confidence 467787655332211 112222 4556777766 6899999999999999999999999999889999999999852
Q ss_pred ccccHHHHHHhHhCC---------ceEEEeCcChHHHHhhcCCceEEEeecCc--chHHHHHHHhcCCCceEEEcCCcch
Q psy14065 92 GIDLISHIITRNLKI---------KMTVLMGANLAGEVAEEKFCETTIGCKDK--TLGPLLHALLQTPNFRVSVVDDVDA 160 (492)
Q Consensus 92 t~~~~se~i~e~l~~---------~~~vlsGPn~A~Ev~~~~pt~vvias~~~--~~~~~v~~lf~~~~f~v~~~~D~~G 160 (492)
+.+.+.++. ..+.+.||.+......+ .+.++..+. +..+.+.++|+...+.+..++|+.+
T Consensus 100 ------~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~---~~~iG~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~ 170 (293)
T TIGR00745 100 ------ERLRELLPARRILGGVVTHGAVREEPGVVHHAGLG---ATKIGDYVGENEAVEALAELLNEAGIPAELHGDILA 170 (293)
T ss_pred ------HHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccc---cEEEecCCCchHHHHHHHHHHHhCCCCCEecchHHH
Confidence 566666542 12456788865555433 377776543 4467889999999999999999999
Q ss_pred hhhhhhhHHH-HHHHHHHhhhcCCC---cCh-HHHHHHHHHHHHHHHHHHHCCCCCccccccccccchhhhh-ccC-CCC
Q psy14065 161 VEICGALKNI-VACGAGFVDGLGLG---DNT-KAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITT-CYG-GRN 233 (492)
Q Consensus 161 vEl~galKNv-~AIa~Gi~~gl~~g---~N~-~aal~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~T-c~s-~RN 233 (492)
.+|.-.+.|+ +...+++.+ ..+| .|. ...++.+.++|+..++++. |.++.... +-+++.+ +.. +.|
T Consensus 171 ~~w~Kl~~N~~~n~l~al~~-~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~--G~~~~~~~----~~~~~~~~~~~~~~~ 243 (293)
T TIGR00745 171 AIWKKLLVNAAINPLTALLD-CKNGELLENPEARELLRRLMDEVVRVARAE--GVDLPDDE----VEELVRAVIRMTAEN 243 (293)
T ss_pred HHHHHHhheechhHHHHHHC-CccceeccChhHHHHHHHHHHHHHHHHHhC--CCCCCHHH----HHHHHHHHHhcCCCC
Confidence 9999999998 666677766 4444 444 4589999999999999999 87654321 1122222 111 123
Q ss_pred H-HHHHHHHhCCCChHHHHHHhcCCceeecchhHHHHHHHHHhcCCCCCCchhhhhHHhhc
Q psy14065 234 R-KVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICI 293 (492)
Q Consensus 234 ~-~~G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~~l~~~~~l~~~~PI~~av~~Il~ 293 (492)
+ +.=+.+.+ |.+. |=-.-...+.++++++|++ +|....+|..+.
T Consensus 244 ~sSm~~D~~~-gr~t-------------Eid~i~G~~v~~a~~~gv~--~P~~~~l~~~~~ 288 (293)
T TIGR00745 244 TSSMLQDLLR-GRRT-------------EIDAINGAVVRLAEKLGID--APVNRTLYALLK 288 (293)
T ss_pred CChHHHHHHc-CCcc-------------hHHHhccHHHHHHHHcCCC--CChHHHHHHHHH
Confidence 2 33344443 3322 2223346778899999995 999999998864
No 31
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.17 E-value=3.1e-10 Score=113.82 Aligned_cols=206 Identities=15% Similarity=0.144 Sum_probs=143.1
Q ss_pred CeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCC-ceEEEeC
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKI-KMTVLMG 113 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~-~~~vlsG 113 (492)
++..++|..+++++||+||+||||+.++++++++++++++++++||++.|+.. +.|++.++. .-+++.|
T Consensus 50 g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i----------~~l~~~l~~~~~vvR~M 119 (272)
T PRK12491 50 GITITTNNNEVANSADILILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSI----------KSTENEFDRKLKVIRVM 119 (272)
T ss_pred CcEEeCCcHHHHhhCCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcH----------HHHHHhcCCCCcEEEEC
Confidence 45677888888999999999999999999999999999888899999999998 788888863 3589999
Q ss_pred cChHHHHhhcCCceEEEe-ecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHH
Q psy14065 114 ANLAGEVAEEKFCETTIG-CKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVI 192 (492)
Q Consensus 114 Pn~A~Ev~~~~pt~vvia-s~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~ 192 (492)
||.+.++.++. |.++.+ ..+++..+.++++|+.-.--+++.++.+-+=.+ + -+.|+ |++
T Consensus 120 PN~~~~vg~g~-t~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~E~~~d~~ta--------l-------sgsgP----Af~ 179 (272)
T PRK12491 120 PNTPVLVGEGM-SALCFNEMVTEKDIKEVLNIFNIFGQTEVVNEKLMDVVTS--------I-------SGSSP----AYV 179 (272)
T ss_pred CChHHHHcCce-EEEEeCCCCCHHHHHHHHHHHHcCCCEEEEcHHHhhhHHH--------h-------ccCcH----HHH
Confidence 99999999997 666544 334566788999998766555665553322111 1 13455 666
Q ss_pred HHHHHHHHHHHHHHCCCCCccccccccccchhhhhccCCCCHH--HHHHHHhCCCChHHHHHHhcCCceeecchhHHHHH
Q psy14065 193 RLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRK--VSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVN 270 (492)
Q Consensus 193 t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s~RN~~--~G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~ 270 (492)
...+..|.+-+..+ |-+.++-..++ +..- ..+.+.+.|.+..++.++. +--|--|...+.
T Consensus 180 ~~~~eal~~a~v~~--Gl~~~~A~~l~------------~~t~~G~a~ll~~~~~~p~~l~~~V----~sPGGtT~~gl~ 241 (272)
T PRK12491 180 YMFIEAMADAAVLG--GMPRKQAYKFA------------AQAVLGSAKMVLETGIHPGELKDMV----CSPGGTTIEAVA 241 (272)
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHH------------HHHHHHHHHHHHhcCCCHHHHHHhC----CCCchHHHHHHH
Confidence 77777788888887 76665543311 1111 2244545678888877765 334455555555
Q ss_pred HHHHhcCCCCCCchhhhhHHh
Q psy14065 271 YMLKNKNMENKFPLFTAVHKI 291 (492)
Q Consensus 271 ~l~~~~~l~~~~PI~~av~~I 291 (492)
. +++.++. --+..++.+.
T Consensus 242 ~-le~~~~~--~~~~~av~aa 259 (272)
T PRK12491 242 T-LEEKGLR--TAIISAMKRC 259 (272)
T ss_pred H-HHHCChH--HHHHHHHHHH
Confidence 4 4456663 3455555544
No 32
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.15 E-value=5.5e-10 Score=110.91 Aligned_cols=184 Identities=18% Similarity=0.187 Sum_probs=134.0
Q ss_pred EecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEEEeCcChH
Q psy14065 38 AVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANLA 117 (492)
Q Consensus 38 at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~vlsGPn~A 117 (492)
.++|.+++++++|+||+||+|+.++++++++++ +.++++|||++.|+.. +.+++.++...+++.|||++
T Consensus 52 ~~~~~~~~~~~advv~LavKPq~~~~vl~~l~~-~~~~~lvISiaAGv~~----------~~l~~~l~~~~vvR~MPNt~ 120 (266)
T COG0345 52 TTTDNQEAVEEADVVFLAVKPQDLEEVLSKLKP-LTKDKLVISIAAGVSI----------ETLERLLGGLRVVRVMPNTP 120 (266)
T ss_pred ccCcHHHHHhhCCEEEEEeChHhHHHHHHHhhc-ccCCCEEEEEeCCCCH----------HHHHHHcCCCceEEeCCChH
Confidence 488888999999999999999999999999999 7789999999999997 88889988557999999999
Q ss_pred HHHhhcCCceEEEe-ecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHHHHHH
Q psy14065 118 GEVAEEKFCETTIG-CKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGL 196 (492)
Q Consensus 118 ~Ev~~~~pt~vvia-s~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~t~g~ 196 (492)
..|.++. |.++.+ ..+++..+.+.++|++-.--+++.++.+-+=-+ + -+.|+ |++..-+
T Consensus 121 a~vg~g~-t~i~~~~~~~~~~~~~v~~l~~~~G~v~~v~E~~~da~Ta------------i---sGSgP----Ayv~~~i 180 (266)
T COG0345 121 ALVGAGV-TAISANANVSEEDKAFVEALLSAVGKVVEVEESLMDAVTA------------L---SGSGP----AYVFLFI 180 (266)
T ss_pred HHHcCcc-eeeecCccCCHHHHHHHHHHHHhcCCeEEechHHhhHHHH------------H---hcCCH----HHHHHHH
Confidence 9999999 777764 556788889999999877777777655433221 0 14555 6777777
Q ss_pred HHHHHHHHHHCCCCCccccccccccchhhhhccCCCCHHHHHHHHhCCCChHHHHHHhcC--Cceeecch
Q psy14065 197 MEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKVSEAFVKTGKSIKDLEDEMLN--GQKLQGPF 264 (492)
Q Consensus 197 ~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s~RN~~~G~~l~~~G~~~~~~~~~~~~--g~~~EG~~ 264 (492)
..|.+-+... |=+.++-+.++-- |. .-.++.+.+.+....++.++... |.|+||+.
T Consensus 181 Eal~~agv~~--Gl~~~~A~~l~~~-----t~-----~Gaakll~e~~~~p~~Lr~~VtSPGGtTiagl~ 238 (266)
T COG0345 181 EALADAGVRL--GLPREEARELAAQ-----TV-----AGAAKLLLESGEHPAELRDQVTSPGGTTIAGLR 238 (266)
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHH-----HH-----HHHHHHHHhcCCCHHHHHHhCcCCCchHHHHHH
Confidence 7888888777 6666554442110 00 11345666655533455555432 44554443
No 33
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.12 E-value=1.6e-09 Score=109.70 Aligned_cols=228 Identities=13% Similarity=0.112 Sum_probs=150.1
Q ss_pred EEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCC-ce--EEEeC
Q psy14065 37 VAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKI-KM--TVLMG 113 (492)
Q Consensus 37 ~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~-~~--~vlsG 113 (492)
..++|.+++++++|+||+|||+++++++++++++++.++++||++..|+... +.+.+.++. ++ ++..-
T Consensus 57 ~~~~~~~~~~~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~---------~~l~~~~~~~~v~~g~~~~ 127 (305)
T PRK12921 57 PVITDPEELTGPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQL---------EQLEPYFGRERVLGGVVFI 127 (305)
T ss_pred eeecCHHHccCCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCChH---------HHHHHhCCcccEEEEEEEE
Confidence 3467777777899999999999999999999999998888999999999752 566666652 21 12222
Q ss_pred cCh--HHH-HhhcCCceEEEeecC---cchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCC---
Q psy14065 114 ANL--AGE-VAEEKFCETTIGCKD---KTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLG--- 184 (492)
Q Consensus 114 Pn~--A~E-v~~~~pt~vvias~~---~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g--- 184 (492)
|++ ... |....+..++++..+ .+..+.+.++|+...+.+..++|+...+|.=.+.|..--+.+.+-+...|
T Consensus 128 ~~~~~~~g~v~~~~~~~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~ 207 (305)
T PRK12921 128 SAQLNGDGVVVQRADHRLTFGEIPGQRSERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGIL 207 (305)
T ss_pred EEEECCCeEEEEcCCCcEEEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHH
Confidence 222 111 222234456776433 35667888999999999999999999999988888555454555544433
Q ss_pred -cChHHHHHHHHHHHHHHHHHHHCCCCCccccccccccchhhhhccCCCCH-HHHHHHHhCCCChHHHHHHhcCCceeec
Q psy14065 185 -DNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNR-KVSEAFVKTGKSIKDLEDEMLNGQKLQG 262 (492)
Q Consensus 185 -~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s~RN~-~~G~~l~~~G~~~~~~~~~~~~g~~~EG 262 (492)
++....++.+.++|+.+++++. |.+..+-.-. -.-+.+...+. .|+ +.=+.+.+ |... |=
T Consensus 208 ~~~~~~~l~~~~~~E~~~v~~a~--G~~~~~~~~~-~~~~~~~~~~~-~~~sSm~~D~~~-gr~t-------------Ei 269 (305)
T PRK12921 208 SRPGGRDLARALLRECLAVARAE--GAPLRDDVVE-EIVKIFAGAPG-DMKTSMLRDMEK-GRPL-------------EI 269 (305)
T ss_pred hCccHHHHHHHHHHHHHHHHHHc--CCCCChhHHH-HHHHHHhccCC-CCCcHHHHHHHc-CCcc-------------cH
Confidence 4566789999999999999999 8764421100 00001111111 121 22233443 3322 21
Q ss_pred chhHHHHHHHHHhcCCCCCCchhhhhHHhhc
Q psy14065 263 PFTADEVNYMLKNKNMENKFPLFTAVHKICI 293 (492)
Q Consensus 263 ~~t~~~v~~l~~~~~l~~~~PI~~av~~Il~ 293 (492)
-.-...++++++++|++ +|..+.+|..+.
T Consensus 270 d~i~G~vv~~a~~~gv~--~P~~~~l~~~~~ 298 (305)
T PRK12921 270 DHLQGVLLRRARAHGIP--TPILDTVYALLK 298 (305)
T ss_pred HHHHHHHHHHHHHhCCC--CcHHHHHHHHHH
Confidence 22235588999999995 999999998864
No 34
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.12 E-value=3.9e-10 Score=119.86 Aligned_cols=242 Identities=10% Similarity=0.074 Sum_probs=175.8
Q ss_pred HHHHHHHHHcCCCCCCCCCCC-C--CCCeEEecCHHHHhccCCEEEEecChH----------HHHHHHHHhhccCCCCCe
Q psy14065 11 KKLTEIINETHENVKYLPGHK-L--PPNVVAVPDVVEAAKDADILVFVVPHQ----------FIVRLCSQLLGKIKPDAV 77 (492)
Q Consensus 11 ~~~~~~in~~~~N~~ylp~i~-l--~~~I~at~dl~~al~~aDiIilaVPs~----------~~~~vl~~l~~~l~~~~~ 77 (492)
++.++.++ ++..|.+.|+++ + -.++.+|++.+ ++++||++|+|||++ ++....+.|.++++++++
T Consensus 38 ~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~-~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~l 115 (425)
T PRK15182 38 KKRILELK-NGVDVNLETTEEELREARYLKFTSEIE-KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDI 115 (425)
T ss_pred HHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHH-HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCE
Confidence 55789999 677777777653 2 23578899886 589999999999975 677778899999988885
Q ss_pred EEEEEccceeccCCccc-cHHHHHHhHhC----CceEEEeCcChHHHHhh----cCCceEEEeecCcchHHHHHHHhcCC
Q psy14065 78 GLSLIKGFDRAEGGGID-LISHIITRNLK----IKMTVLMGANLAGEVAE----EKFCETTIGCKDKTLGPLLHALLQTP 148 (492)
Q Consensus 78 iIs~~KGl~~~~~~t~~-~~se~i~e~l~----~~~~vlsGPn~A~Ev~~----~~pt~vvias~~~~~~~~v~~lf~~~ 148 (492)
+ +.+.+.++ +|.+ .+...+.+..+ ..+.+.+-|.+..+... ..|..++.+. +++..+.++.+|+.-
T Consensus 116 V--I~~STv~p--gtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~~~~~riv~G~-~~~~~~~~~~ly~~~ 190 (425)
T PRK15182 116 V--VYESTVYP--GCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRLTNIKKITSGS-TAQIAELIDEVYQQI 190 (425)
T ss_pred E--EEecCCCC--cchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccccCCCeEEECC-CHHHHHHHHHHHHHH
Confidence 4 44454543 4444 44555554322 34778888888887765 4555576664 566778888888654
Q ss_pred C-ceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHHHHHHHHHCCCCCccccccccccchhhhh
Q psy14065 149 N-FRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITT 227 (492)
Q Consensus 149 ~-f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~T 227 (492)
. ..++...|+-..|++ ++-.|+..++...++||+.+||+++ |.|+..+...+|.
T Consensus 191 ~~~~~~~~~~~~~AE~~-----------------Kl~~N~~~av~Ia~~NE~a~lae~~--GiD~~~v~~a~~~------ 245 (425)
T PRK15182 191 ISAGTYKAESIKVAEAA-----------------KVIENTQRDLNIALVNELAIIFNRL--NIDTEAVLRAAGS------ 245 (425)
T ss_pred hhcCcEEecCHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHh--CcCHHHHHHHhcC------
Confidence 3 236677788888887 9999999999999999999999999 9999999875333
Q ss_pred ccCCCCHHHHHHHHhCCCChHHHHHHhcCCceeecchhHHHHHHHHHhcCCCCCCchhhhhHHhhcCCCChHHHHHHHh
Q psy14065 228 CYGGRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQQFIDAIR 306 (492)
Q Consensus 228 c~s~RN~~~G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~~l~~~~~l~~~~PI~~av~~Il~~~~~p~~~i~~L~ 306 (492)
+ ++|.. .++|- +. |+|+ +++...+...+++++.+ ++++.++.+++. .-|+.+++.+.
T Consensus 246 --~---~~~~~--~~pG~-vG--------G~Cl--pkD~~~L~~~a~~~g~~--~~l~~~a~~iN~--~~~~~v~~~~~ 302 (425)
T PRK15182 246 --K---WNFLP--FRPGL-VG--------GHCI--GVDPYYLTHKSQGIGYY--PEIILAGRRLND--NMGNYVSEQLI 302 (425)
T ss_pred --C---CCccc--CCCCc-cc--------cccc--cccHHHHHHHHHhcCCC--cHHHHHHHHHHH--HHHHHHHHHHH
Confidence 2 11221 12333 43 8899 89999999999999984 899999999953 44555555443
No 35
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.09 E-value=1.1e-09 Score=108.25 Aligned_cols=205 Identities=19% Similarity=0.178 Sum_probs=138.3
Q ss_pred CeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCC-ceEEEeC
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKI-KMTVLMG 113 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~-~~~vlsG 113 (492)
++++++|++++++++|+||+||||+.++++++++++++.++++|||++.|+.. +.+++.++. ..+++.|
T Consensus 30 g~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~----------~~l~~~~~~~~~ivR~m 99 (245)
T TIGR00112 30 GIVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTL----------EKLSQLLGGTRRVVRVM 99 (245)
T ss_pred CcEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCH----------HHHHHHcCCCCeEEEEC
Confidence 46667888888999999999999999999999999988778899999999997 778888873 4689999
Q ss_pred cChHHHHhhcCCceEEEe-ecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHH
Q psy14065 114 ANLAGEVAEEKFCETTIG-CKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVI 192 (492)
Q Consensus 114 Pn~A~Ev~~~~pt~vvia-s~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~ 192 (492)
||.+.++.++. |.++.+ ..+++..+.++++|+.-..-+++.++.+-.= .|++ +.|+ |++
T Consensus 100 Pn~~~~~~~g~-t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~~--------tals-------gsgP----A~~ 159 (245)
T TIGR00112 100 PNTPAKVGAGV-TAIAANANVSEEDRALVLALFKAVGEVVELPEALMDAV--------TALS-------GSGP----AYV 159 (245)
T ss_pred CChHHHHhCCe-EEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchH--------Hhhc-------cCcH----HHH
Confidence 99999999987 666665 2345667899999988776666665543211 1111 2333 566
Q ss_pred HHHHHHHHHHHHHHCCCCCccccccccccchhhhhccCCCCHH--HHHHHHhCCCChHHHHHHhcCCceeecchhHHHHH
Q psy14065 193 RLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRK--VSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVN 270 (492)
Q Consensus 193 t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s~RN~~--~G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~ 270 (492)
...+..|.+-+... |-+++.-..+. ...- .++.+-+.|.+.+++.+++ +--|--|.+.+.
T Consensus 160 ~~~~~al~~~~v~~--Gl~~~~A~~lv------------~~~~~G~a~l~~~~~~~~~~l~~~v----~spgGtT~~gl~ 221 (245)
T TIGR00112 160 FLFIEALADAGVKQ--GLPRELALELA------------AQTVKGAAKLLEESGEHPALLKDQV----TSPGGTTIAGLA 221 (245)
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHH------------HHHHHHHHHHHHhcCCCHHHHHHcC----CCCcHHHHHHHH
Confidence 66666777777777 76665443311 0111 2333444577787777765 333444555554
Q ss_pred HHHHhcCCCCCCchhhhhHH
Q psy14065 271 YMLKNKNMENKFPLFTAVHK 290 (492)
Q Consensus 271 ~l~~~~~l~~~~PI~~av~~ 290 (492)
. +++.++. --+..++.+
T Consensus 222 ~-Le~~~~~--~~~~~a~~a 238 (245)
T TIGR00112 222 V-LEEKGVR--GAVIEAVEA 238 (245)
T ss_pred H-HHHCChH--HHHHHHHHH
Confidence 4 3445653 234444443
No 36
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.07 E-value=1.3e-09 Score=115.54 Aligned_cols=236 Identities=14% Similarity=0.137 Sum_probs=167.3
Q ss_pred HHHHHHHHHcCCCCCCCCCCC-C------CCCeEEecCHHHHhccCCEEEEecCh----------HHHHHHHHHhhccCC
Q psy14065 11 KKLTEIINETHENVKYLPGHK-L------PPNVVAVPDVVEAAKDADILVFVVPH----------QFIVRLCSQLLGKIK 73 (492)
Q Consensus 11 ~~~~~~in~~~~N~~ylp~i~-l------~~~I~at~dl~~al~~aDiIilaVPs----------~~~~~vl~~l~~~l~ 73 (492)
++.++.++. +..+.+.|++. + ...++++++. ++||+||+|||+ .++.++++.+.++++
T Consensus 36 ~~~v~~l~~-g~~~~~e~~l~~~l~~~~~~g~l~~~~~~----~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~ 110 (415)
T PRK11064 36 QHAVDTINR-GEIHIVEPDLDMVVKTAVEGGYLRATTTP----EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLK 110 (415)
T ss_pred HHHHHHHHC-CCCCcCCCCHHHHHHHHhhcCceeeeccc----ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCC
Confidence 446788774 55677777763 1 2347777764 489999999998 599999999999998
Q ss_pred CCCeEEEEEccceeccCCccccHHHHHHhHhC-----------CceEEEeCcChHHHHhh----cCCceEEEeecCcchH
Q psy14065 74 PDAVGLSLIKGFDRAEGGGIDLISHIITRNLK-----------IKMTVLMGANLAGEVAE----EKFCETTIGCKDKTLG 138 (492)
Q Consensus 74 ~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~-----------~~~~vlsGPn~A~Ev~~----~~pt~vvias~~~~~~ 138 (492)
++++|| -++..++ ++.+.+...+.+.-. ..+.+...|.|..+... ..|..+ +++.+++..
T Consensus 111 ~g~iVI--~~STv~p--gtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~G~~~~~~~~~~~v-vgG~~~~~~ 185 (415)
T PRK11064 111 KGDLVI--LESTSPV--GATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLPGQVMVELIKNDRV-IGGMTPVCS 185 (415)
T ss_pred CCCEEE--EeCCCCC--CHHHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCCCChhhhhcCCCEE-EEeCCHHHH
Confidence 887554 4444432 677777776665421 23567888977765433 455566 477788888
Q ss_pred HHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHHHHHHHHHCCCCCccccccc
Q psy14065 139 PLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFES 218 (492)
Q Consensus 139 ~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~gl 218 (492)
+.++.+|+.-.-.++...|+-..|++ ++-.|+.-++...++||+..||+++ |.|+..+...
T Consensus 186 ~~~~~ly~~~~~~~~~~~~~~~Ae~~-----------------Kl~~N~~~a~~ia~~nE~~~lae~~--GiD~~~v~~~ 246 (415)
T PRK11064 186 ARASELYKIFLEGECVVTNSRTAEMC-----------------KLTENSFRDVNIAFANELSLICADQ--GINVWELIRL 246 (415)
T ss_pred HHHHHHHHHhcCCCeeeCCHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 88998887543334455678888886 9999999999999999999999999 9999999874
Q ss_pred cccchhhhhccCCCCHHHHHHHHhCCCChHHHHHHhcCCceeecchhHHHHHHHHHhcCCCCCCchhhhhHHhhcCCCCh
Q psy14065 219 CGVADLITTCYGGRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKP 298 (492)
Q Consensus 219 aGlGDl~~Tc~s~RN~~~G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~~l~~~~~l~~~~PI~~av~~Il~~~~~p 298 (492)
++. .+| ++. .++|-.+. |+|+ +++...+. .+.+. +.+++.++.+++.. -|
T Consensus 247 ~~~--------~~r---i~~--l~pG~G~G--------G~Cl--pkD~~~L~---~~~~~--~~~l~~~a~~~N~~--~~ 296 (415)
T PRK11064 247 ANR--------HPR---VNI--LQPGPGVG--------GHCI--AVDPWFIV---AQNPQ--QARLIRTAREVNDG--KP 296 (415)
T ss_pred hcc--------CCC---ccc--CCCCCCCC--------Cccc--cccHHHHH---HhcCC--ccHHHHHHHHHHHH--hH
Confidence 443 223 332 35666665 8999 78887763 34444 48999999999544 34
Q ss_pred HHHHHHH
Q psy14065 299 QQFIDAI 305 (492)
Q Consensus 299 ~~~i~~L 305 (492)
+.+++.+
T Consensus 297 ~~v~~~~ 303 (415)
T PRK11064 297 HWVIDQV 303 (415)
T ss_pred HHHHHHH
Confidence 5444444
No 37
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.99 E-value=2.7e-09 Score=107.30 Aligned_cols=111 Identities=13% Similarity=0.072 Sum_probs=92.4
Q ss_pred eEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEEEeCcC
Q psy14065 36 VVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGAN 115 (492)
Q Consensus 36 I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~vlsGPn 115 (492)
+.+++|..++++++|+||+|||++.++++++++++++++++.|||+++|++. +.|++.++...+++.|||
T Consensus 52 ~~~~~~~~e~~~~aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~----------~~l~~~~~~~~vvR~MPN 121 (277)
T PRK06928 52 VELADNEAEIFTKCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSL----------DDLLEITPGLQVSRLIPS 121 (277)
T ss_pred eEEeCCHHHHHhhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCH----------HHHHHHcCCCCEEEEeCc
Confidence 5567888888999999999999999999999999999888899999999997 677777765469999999
Q ss_pred hHHHHhhcCCceEEEe-ecCcchHHHHHHHhcCCCceEEEcCC
Q psy14065 116 LAGEVAEEKFCETTIG-CKDKTLGPLLHALLQTPNFRVSVVDD 157 (492)
Q Consensus 116 ~A~Ev~~~~pt~vvia-s~~~~~~~~v~~lf~~~~f~v~~~~D 157 (492)
.+..+.++. |.++.. ..+++..+.++++|+.-.--+++.++
T Consensus 122 ~~~~~g~g~-t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~ 163 (277)
T PRK06928 122 LTSAVGVGT-SLVAHAETVNEANKSRLEETLSHFSHVMTIREE 163 (277)
T ss_pred cHHHHhhhc-EEEecCCCCCHHHHHHHHHHHHhCCCEEEEchh
Confidence 999999997 666544 34456778999999876665666554
No 38
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.92 E-value=1.1e-08 Score=102.81 Aligned_cols=160 Identities=16% Similarity=0.099 Sum_probs=111.2
Q ss_pred CCCCCCCCCCeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhC
Q psy14065 26 YLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLK 105 (492)
Q Consensus 26 ylp~i~l~~~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~ 105 (492)
++..+..+.+++.++|+.++++++|+||+||||+.+.++++++.++++++++|||+++|+.+ +.+++.++
T Consensus 43 ~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~----------~~l~~~~~ 112 (279)
T PRK07679 43 RLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGVST----------HSIRNLLQ 112 (279)
T ss_pred HHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCH----------HHHHHHcC
Confidence 33333333467788899899999999999999999999999999988888999999999987 66666666
Q ss_pred C-ceEEEeCcChHHHHhhcCCceEEEee-cCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCC
Q psy14065 106 I-KMTVLMGANLAGEVAEEKFCETTIGC-KDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGL 183 (492)
Q Consensus 106 ~-~~~vlsGPn~A~Ev~~~~pt~vvias-~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~ 183 (492)
. ..+++++||++..+..+. |.++-+. .+++..+.++.+|+.-.-.+++.++.+- .+.|+. +.
T Consensus 113 ~~~~v~r~mPn~~~~~~~~~-t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~e~~~~------------~~~a~~---Gs 176 (279)
T PRK07679 113 KDVPIIRAMPNTSAAILKSA-TAISPSKHATAEHIQTAKALFETIGLVSVVEEEDMH------------AVTALS---GS 176 (279)
T ss_pred CCCeEEEECCCHHHHHhccc-EEEeeCCCCCHHHHHHHHHHHHhCCcEEEeCHHHhh------------hHHHhh---cC
Confidence 3 369999999999999887 4443222 2355678899999876655555555211 111111 33
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHCCCCCcccccc
Q psy14065 184 GDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFE 217 (492)
Q Consensus 184 g~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~g 217 (492)
|++ ++...+.-|.+.+.+. |-++++...
T Consensus 177 gpa----~~~~~~eal~e~~~~~--Gl~~~~a~~ 204 (279)
T PRK07679 177 GPA----YIYYVVEAMEKAAKKI--GLKEDVAKS 204 (279)
T ss_pred HHH----HHHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 332 2333334444447777 878777665
No 39
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=98.89 E-value=2.3e-08 Score=99.60 Aligned_cols=195 Identities=14% Similarity=0.113 Sum_probs=129.9
Q ss_pred eEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCC-ceEEEeCc
Q psy14065 36 VVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKI-KMTVLMGA 114 (492)
Q Consensus 36 I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~-~~~vlsGP 114 (492)
+...+|..++++++|+||+||||+.++++++++++++. ++.|||+++|+.. +.+++.++. ..+++.+|
T Consensus 45 ~~~~~~~~~~~~~~D~Vilavkp~~~~~vl~~i~~~l~-~~~iIS~~aGi~~----------~~l~~~~~~~~~vvr~mP 113 (260)
T PTZ00431 45 FVYLQSNEELAKTCDIIVLAVKPDLAGKVLLEIKPYLG-SKLLISICGGLNL----------KTLEEMVGVEAKIVRVMP 113 (260)
T ss_pred eEEeCChHHHHHhCCEEEEEeCHHHHHHHHHHHHhhcc-CCEEEEEeCCccH----------HHHHHHcCCCCeEEEECC
Confidence 34567888888999999999999999999999999886 4688999999997 778888763 46789999
Q ss_pred ChHHHHhhcCCceEEEe-ecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHHH
Q psy14065 115 NLAGEVAEEKFCETTIG-CKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIR 193 (492)
Q Consensus 115 n~A~Ev~~~~pt~vvia-s~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~t 193 (492)
|++..+.++. +.++-. ..+++..+.++++|+.-..-+++.++.+ .... |+ -+.|+ |++.
T Consensus 114 n~p~~~g~g~-t~i~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~~~--d~~t------a~-------~gsgP----A~~~ 173 (260)
T PTZ00431 114 NTPSLVGQGS-LVFCANNNVDSTDKKKVIDIFSACGIIQEIKEKDM--DIAT------AI-------SGCGP----AYVF 173 (260)
T ss_pred CchhHhccee-EEEEeCCCCCHHHHHHHHHHHHhCCcEEEEChHHc--chhh------hh-------cCCHH----HHHH
Confidence 9999998875 555433 2245667899999998888777765532 2221 11 03344 5555
Q ss_pred HHHHHHHHHHHHHCCCCCccccccccccchhhhhccCCCCHHHHHHHHhCCCChHHHHHHhcCCceeecchhHHHHHHHH
Q psy14065 194 LGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYML 273 (492)
Q Consensus 194 ~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s~RN~~~G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~~l~ 273 (492)
..+..|.+-+.+. |-+.++-..++- . |.. -.++.+.+.+.+..++.++. +--|--|.+.+..+
T Consensus 174 ~~~~al~~~~v~~--Gl~~~~a~~l~~--~---~~~-----G~a~ll~~~~~~~~~l~~~v----~spgG~T~~gl~~l- 236 (260)
T PTZ00431 174 LFIESLIDAGVKN--GLNRDVSKNLVL--Q---TIL-----GSVHMVKASDQPVQQLKDDV----CSPGGITIVGLYTL- 236 (260)
T ss_pred HHHHHHHHHHHHc--CCCHHHHHHHHH--H---HHH-----HHHHHHHhcCCCHHHHHHhC----CCCChHHHHHHHHH-
Confidence 5666666777777 666554433110 0 000 12344555567777777655 33444555555543
Q ss_pred HhcCC
Q psy14065 274 KNKNM 278 (492)
Q Consensus 274 ~~~~l 278 (492)
++.++
T Consensus 237 e~~g~ 241 (260)
T PTZ00431 237 EKHAF 241 (260)
T ss_pred HHCCh
Confidence 44555
No 40
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.86 E-value=6.6e-08 Score=97.63 Aligned_cols=214 Identities=14% Similarity=0.075 Sum_probs=137.2
Q ss_pred eEEecCHHHHhccCCEEEEecCh-HHHHHHH---HHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEEE
Q psy14065 36 VVAVPDVVEAAKDADILVFVVPH-QFIVRLC---SQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVL 111 (492)
Q Consensus 36 I~at~dl~~al~~aDiIilaVPs-~~~~~vl---~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~vl 111 (492)
+..++++.++++++|+||+|||+ +.+++++ +++.+.+.+++++|.++ ++.+ ++.+.+++.+.+. +. .++
T Consensus 40 ~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~~~g~~vid~s-t~~p---~~~~~~~~~~~~~-g~--~~v 112 (288)
T TIGR01692 40 AQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKVAKGSLLIDCS-TIDP---DSARKLAELAAAH-GA--VFM 112 (288)
T ss_pred CeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcCCCCCEEEECC-CCCH---HHHHHHHHHHHHc-CC--cEE
Confidence 45677889999999999999998 6789998 78888888888888888 7776 5666777776653 32 223
Q ss_pred eCcChHHHHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHHH
Q psy14065 112 MGANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAV 191 (492)
Q Consensus 112 sGPn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal 191 (492)
-.|-+-.......-+-..+.+-+++..+.++.+|+.-.-+++...+.-..+. +++-.|...+.
T Consensus 113 daPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~-----------------~Kl~~n~~~~~ 175 (288)
T TIGR01692 113 DAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQA-----------------AKICNNMLLGI 175 (288)
T ss_pred ECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEeeCCCCHHHH-----------------HHHHHHHHHHH
Confidence 3333222222222233444444667778888888754434444333222222 47888988888
Q ss_pred HHHHHHHHHHHHHHHCCCCCccccccccccchhhhhccCCCCHHHHHH----------HHhCCCChHHHHHHhcCCceee
Q psy14065 192 IRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKVSEA----------FVKTGKSIKDLEDEMLNGQKLQ 261 (492)
Q Consensus 192 ~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s~RN~~~G~~----------l~~~G~~~~~~~~~~~~g~~~E 261 (492)
...+++|...++++. |-++++++.. +.+... ++..+-.. +.....+.... .--
T Consensus 176 ~~~~~~Ea~~la~~~--Gld~~~~~~~------~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~f~--------~~~ 238 (288)
T TIGR01692 176 SMIGTAEAMALGEKL--GLDPKVLFEI------ANTSSG-RCWSSDTYNPVPGVMPQAPASNGYQGGFG--------TAL 238 (288)
T ss_pred HHHHHHHHHHHHHHc--CCCHHHHHHH------HhcCCc-cCcHHHHhCCCccccccccccCCCCCCcc--------hHH
Confidence 889999999999999 9999988752 222221 33222110 01101111100 112
Q ss_pred cchhHHHHHHHHHhcCCCCCCchhhhhHHhh
Q psy14065 262 GPFTADEVNYMLKNKNMENKFPLFTAVHKIC 292 (492)
Q Consensus 262 G~~t~~~v~~l~~~~~l~~~~PI~~av~~Il 292 (492)
..++++.+.+++++.++ ++|+...+.++.
T Consensus 239 ~~KDl~~~~~~a~~~g~--~~p~~~~~~~~~ 267 (288)
T TIGR01692 239 MLKDLGLAQDAAKSAGA--PTPLGALARQLY 267 (288)
T ss_pred HHhhHHHHHHHHHHcCC--CChHHHHHHHHH
Confidence 25788899999999999 499999887764
No 41
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=98.73 E-value=1.5e-07 Score=95.13 Aligned_cols=226 Identities=10% Similarity=0.072 Sum_probs=139.6
Q ss_pred EecCHHHHhccCCEEEEecChH-HHHHHH---HHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEEEeC
Q psy14065 38 AVPDVVEAAKDADILVFVVPHQ-FIVRLC---SQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMG 113 (492)
Q Consensus 38 at~dl~~al~~aDiIilaVPs~-~~~~vl---~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~vlsG 113 (492)
..++..++++++|+||+|+|.. .++.++ +.+.+.+++++++|.++.+ .+ .+.+.+.+.+++ ...-++..
T Consensus 45 ~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~-~~---~~~~~l~~~l~~---~g~~~~~~ 117 (291)
T TIGR01505 45 TAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSI-SP---IESKRFAKAVKE---KGIDYLDA 117 (291)
T ss_pred ccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCC-CH---HHHHHHHHHHHH---cCCCEEec
Confidence 3567788999999999999974 677666 3455667778888776643 33 233333334433 23445567
Q ss_pred cChHHHHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHHH
Q psy14065 114 ANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIR 193 (492)
Q Consensus 114 Pn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~t 193 (492)
|-+..+......+..++.+-+++..+.++.+|+.-..+++...+.-..+. +++..|...+...
T Consensus 118 pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~-----------------~Kl~~n~~~~~~~ 180 (291)
T TIGR01505 118 PVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVGGNGDGQT-----------------CKVANQIIVALNI 180 (291)
T ss_pred CCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeCCCCHHHH-----------------HHHHHHHHHHHHH
Confidence 87765555544443444445677888899998876655554433222222 3677899999999
Q ss_pred HHHHHHHHHHHHHCCCCCccccccccccchhhhhccCCCCHHH---HHHHHhCCCChHHHHHHhcCCceeecchhHHHHH
Q psy14065 194 LGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKV---SEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVN 270 (492)
Q Consensus 194 ~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s~RN~~~---G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~ 270 (492)
.+++|+..|+++. |.++++++..-.-+ .+++.-+ +..+.....+...-. ..+ .+++..+.
T Consensus 181 ~~~~Ea~~l~~~~--Gid~~~~~~~l~~~-------~~~s~~~~~~~~~~~~~~~~~~f~~------~~~--~KDl~~~~ 243 (291)
T TIGR01505 181 EAVSEALVFASKA--GVDPVRVRQALRGG-------LAGSTVLEVKGERVIDRTFKPGFRI------DLH--QKDLNLAL 243 (291)
T ss_pred HHHHHHHHHHHHc--CCCHHHHHHHHhcC-------cccCHHHHhhChhhhcCCCCCCcch------HHH--HHHHHHHH
Confidence 9999999999999 99999888521110 0122211 112221111110000 111 57888899
Q ss_pred HHHHhcCCCCCCchhhhhHHhhc-------CCCChHHHHHHHh
Q psy14065 271 YMLKNKNMENKFPLFTAVHKICI-------GEMKPQQFIDAIR 306 (492)
Q Consensus 271 ~l~~~~~l~~~~PI~~av~~Il~-------~~~~p~~~i~~L~ 306 (492)
+++++.++. +|+..++.++.. ++.+...+++.+.
T Consensus 244 ~~a~~~g~~--~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~ 284 (291)
T TIGR01505 244 DSAKAVGAN--LPNTATVQELFNTLRANGGGQLDHSALVQALE 284 (291)
T ss_pred HHHHHcCCC--ChhHHHHHHHHHHHHhcCCCccChHHHHHHHH
Confidence 999999994 999998877653 2455555555443
No 42
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=98.66 E-value=7.3e-08 Score=99.66 Aligned_cols=156 Identities=17% Similarity=0.089 Sum_probs=120.2
Q ss_pred CCeEEecCHHHHhccCCEEEEecChHH-HHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhC-------
Q psy14065 34 PNVVAVPDVVEAAKDADILVFVVPHQF-IVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLK------- 105 (492)
Q Consensus 34 ~~I~at~dl~~al~~aDiIilaVPs~~-~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~------- 105 (492)
.++++++|..++++++|+||+++|++. ++++++++.++++++++||+++++-. ..+++.+.+.++
T Consensus 67 ~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~-------~~~s~~l~~~l~~~~~~~g 139 (342)
T PRK12557 67 AGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSP-------VVLYYSLEGELRTKRKDVG 139 (342)
T ss_pred CCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCH-------HHHHHHHHHHhcccccccC
Confidence 357788899999999999999999998 99999999999988898888887622 233445555442
Q ss_pred ----CceEEEeCcChHHHHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhc
Q psy14065 106 ----IKMTVLMGANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGL 181 (492)
Q Consensus 106 ----~~~~vlsGPn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl 181 (492)
.+..+..+|+++.++..+.|++.+.++ +++..+.++.+|+.-..++|..+. +.+.+.
T Consensus 140 i~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~-~~e~~e~v~~LL~a~G~~v~~~~~----g~~~~v-------------- 200 (342)
T PRK12557 140 ISSMHPAAVPGTPQHGHYVIAGKTTNGTELA-TEEQIEKCVELAESIGKEPYVVPA----DVVSAV-------------- 200 (342)
T ss_pred eeecCCccccccccchheEEeCCCcccccCC-CHHHHHHHHHHHHHcCCEEEEeCH----HHHHHH--------------
Confidence 123456778999999888887555555 456679999999999999987762 334333
Q ss_pred CCCcChHHHHHHHHHHHHHHHHHHHCCCCCcccccc
Q psy14065 182 GLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFE 217 (492)
Q Consensus 182 ~~g~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~g 217 (492)
+.-.|...++...|+.|...+++++ |.+|..+..
T Consensus 201 k~~~n~l~av~~a~~aE~~~l~~~~--~~~p~~~~~ 234 (342)
T PRK12557 201 ADMGSLVTAVALSGVLDYYSVGTKI--IKAPKEMIE 234 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 4456788888999999999999999 888876654
No 43
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.64 E-value=7.1e-07 Score=88.85 Aligned_cols=206 Identities=21% Similarity=0.217 Sum_probs=126.7
Q ss_pred CeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCC-ceEEEeC
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKI-KMTVLMG 113 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~-~~~vlsG 113 (492)
++..+++.+++++++|+||+|||++.++++++++++++ ++.|||++.|+.. +.+++.++. .-++...
T Consensus 49 g~~~~~~~~~~~~~advVil~v~~~~~~~v~~~l~~~~--~~~vvs~~~gi~~----------~~l~~~~~~~~~iv~~~ 116 (267)
T PRK11880 49 GVRAATDNQEAAQEADVVVLAVKPQVMEEVLSELKGQL--DKLVVSIAAGVTL----------ARLERLLGADLPVVRAM 116 (267)
T ss_pred CCeecCChHHHHhcCCEEEEEcCHHHHHHHHHHHHhhc--CCEEEEecCCCCH----------HHHHHhcCCCCcEEEec
Confidence 35567788888999999999999999999999999887 5789999999975 677777763 3567799
Q ss_pred cChHHHHhhcCCceEEEee-cCcchHHHHHHHhcCCCceEEEc-CCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHHH
Q psy14065 114 ANLAGEVAEEKFCETTIGC-KDKTLGPLLHALLQTPNFRVSVV-DDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAV 191 (492)
Q Consensus 114 Pn~A~Ev~~~~pt~vvias-~~~~~~~~v~~lf~~~~f~v~~~-~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal 191 (492)
||++..+..+. +.++.+. .+++..+.++++|+.-.-.+++. ++.. +.+- |++ +.|+ ++
T Consensus 117 P~~p~~~~~~~-~~i~~~~~~~~~~~~~v~~l~~~lG~~~~~~~e~~~--d~~~------a~~-------~~~p----a~ 176 (267)
T PRK11880 117 PNTPALVGAGM-TALTANALVSAEDRELVENLLSAFGKVVWVDDEKQM--DAVT------AVS-------GSGP----AY 176 (267)
T ss_pred CCchHHHcCce-EEEecCCCCCHHHHHHHHHHHHhCCeEEEECChHhc--chHH------HHh-------cChH----HH
Confidence 99998887774 4444442 35677788999998877655555 3322 2221 111 2233 23
Q ss_pred HHHHHHHHHHHHHHHCCCCCccccccccccchhhhhccCCCCHHHHHHHHhCCCChHHHHHHhcCCceeecchhHHHHHH
Q psy14065 192 IRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNY 271 (492)
Q Consensus 192 ~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s~RN~~~G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~~ 271 (492)
+..-+..+.+.+... |-+++....+ +-.++ +-....+.+.|.+.+++.+++ +.-|--|.+.+.
T Consensus 177 ~~~~~~~~~~~~~~~--Gl~~~~a~~~--~~~~~--------~g~~~~~~~~~~~~~~l~~~v----~tpgG~t~~gl~- 239 (267)
T PRK11880 177 VFLFIEALADAGVKL--GLPREQARKL--AAQTV--------LGAAKLLLESGEHPAELRDNV----TSPGGTTIAALR- 239 (267)
T ss_pred HHHHHHHHHHHHHHc--CCCHHHHHHH--HHHHH--------HHHHHHHHhcCCCHHHHHHhC----CCCcHHHHHHHH-
Confidence 333445566666665 6555543321 10010 001233334466666665544 334444444443
Q ss_pred HHHhcCCCCCCchhhhhHHh
Q psy14065 272 MLKNKNMENKFPLFTAVHKI 291 (492)
Q Consensus 272 l~~~~~l~~~~PI~~av~~I 291 (492)
.+++.|+. -.+..++.+.
T Consensus 240 ~l~~~g~~--~~~~~a~~~~ 257 (267)
T PRK11880 240 VLEEKGLR--AAVIEAVQAA 257 (267)
T ss_pred HHHHCCHH--HHHHHHHHHH
Confidence 34556663 4555555554
No 44
>PRK07680 late competence protein ComER; Validated
Probab=98.62 E-value=1.2e-06 Score=87.79 Aligned_cols=115 Identities=11% Similarity=0.119 Sum_probs=91.8
Q ss_pred CeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEEEeCc
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGA 114 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~vlsGP 114 (492)
++..+.|.+++++++|+||+|||++.+++++++++++++++++||+++.|+.. +.+++.++. ..++.+|
T Consensus 49 g~~~~~~~~~~~~~aDiVilav~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~----------~~L~~~~~~-~~~r~~p 117 (273)
T PRK07680 49 GIHVAKTIEEVISQSDLIFICVKPLDIYPLLQKLAPHLTDEHCLVSITSPISV----------EQLETLVPC-QVARIIP 117 (273)
T ss_pred CeEEECCHHHHHHhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCH----------HHHHHHcCC-CEEEECC
Confidence 46678888888999999999999999999999999999888899999999875 677777764 4788999
Q ss_pred ChHHHHhhcCCceEEEee-cCcchHHHHHHHhcCCCceEEEcCCcchh
Q psy14065 115 NLAGEVAEEKFCETTIGC-KDKTLGPLLHALLQTPNFRVSVVDDVDAV 161 (492)
Q Consensus 115 n~A~Ev~~~~pt~vvias-~~~~~~~~v~~lf~~~~f~v~~~~D~~Gv 161 (492)
|.+..+.++. +.++.+. .+++..+.++++|+.-...+++.+|..-+
T Consensus 118 ~~~~~~~~G~-t~~~~g~~~~~~~~~~~~~ll~~~G~~~~i~e~~~~~ 164 (273)
T PRK07680 118 SITNRALSGA-SLFTFGSRCSEEDQQKLERLFSNISTPLVIEEDITRV 164 (273)
T ss_pred ChHHHHhhcc-EEEeeCCCCCHHHHHHHHHHHHcCCCEEEEChHhcch
Confidence 9998777776 4444442 24456688999999888777777774433
No 45
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.61 E-value=4e-07 Score=88.35 Aligned_cols=112 Identities=18% Similarity=0.217 Sum_probs=88.1
Q ss_pred CHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccC-------CccccHHHHHHhHhCC-ceEEEe
Q psy14065 41 DVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEG-------GGIDLISHIITRNLKI-KMTVLM 112 (492)
Q Consensus 41 dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~-------~t~~~~se~i~e~l~~-~~~vls 112 (492)
+..++++++|+||+|||++.++++++++++++. +++||++++|++.+.+ ......++.+++.++. .-++..
T Consensus 61 ~~~ea~~~aDvVilavp~~~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka 139 (219)
T TIGR01915 61 DNAEAAKRADVVILAVPWDHVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAA 139 (219)
T ss_pred ChHHHHhcCCEEEEECCHHHHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeec
Confidence 556789999999999999999999999988776 4899999999986211 1113456889999875 578999
Q ss_pred CcChHHHHhhcC----CceEEEeecCcchHHHHHHHhcCC-CceEE
Q psy14065 113 GANLAGEVAEEK----FCETTIGCKDKTLGPLLHALLQTP-NFRVS 153 (492)
Q Consensus 113 GPn~A~Ev~~~~----pt~vvias~~~~~~~~v~~lf~~~-~f~v~ 153 (492)
.||++.++.++. +..+.+++++++..+.+.+|...- .|+++
T Consensus 140 ~~~~~a~~~~~~~~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~v 185 (219)
T TIGR01915 140 FHNLSAVLLQDVDDEVDCDVLVCGDDEEAKEVVAELAGRIDGLRAL 185 (219)
T ss_pred cccCCHHHhcCCCCCCCCCEEEECCCHHHHHHHHHHHHhcCCCCcc
Confidence 999999988652 345678888888778888888765 77753
No 46
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.58 E-value=1.6e-06 Score=86.35 Aligned_cols=209 Identities=17% Similarity=0.155 Sum_probs=133.7
Q ss_pred CeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEEEeCc
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGA 114 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~vlsGP 114 (492)
+++.+++.+++++++|+||+|+|++.++++++++.+++.+++++||++.|+.. +.+++.++...+++.+|
T Consensus 48 g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~----------~~l~~~~~~~~vvr~mP 117 (266)
T PLN02688 48 GVKTAASNTEVVKSSDVIILAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITL----------ADLQEWAGGRRVVRVMP 117 (266)
T ss_pred CCEEeCChHHHHhcCCEEEEEECcHHHHHHHHHHHhhcCCCCEEEEecCCCcH----------HHHHHHcCCCCEEEECC
Confidence 56778888899999999999999999999999999888888999999999876 56666665435677899
Q ss_pred ChHHHHhhcCCceEEEe-ecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHHH
Q psy14065 115 NLAGEVAEEKFCETTIG-CKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIR 193 (492)
Q Consensus 115 n~A~Ev~~~~pt~vvia-s~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~t 193 (492)
|++..+..+. +.++.. ..+++..+.++.+|+.-.--++.+++..-.=. ++ + +.|. +..+.+.
T Consensus 118 ~~~~~~~~~~-~~l~~~~~~~~~~~~~v~~l~~~~G~~~~~~e~~~d~~~--------~~-~------g~g~-a~~~~~~ 180 (266)
T PLN02688 118 NTPCLVGEAA-SVMSLGPAATADDRDLVATLFGAVGKIWVVDEKLLDAVT--------GL-S------GSGP-AYIFLAI 180 (266)
T ss_pred CcHHHHhCce-EEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHHcchhH--------hh-h------cCHH-HHHHHHH
Confidence 9999988776 555554 33567789999999875553333332111111 10 0 1111 2244555
Q ss_pred HHHHHHHHHHHHHCCCCCccccccccccchhhhhccCCCCHHHHHHHHhCCCChHHHHHHhcCCceeecchhHHHHHHHH
Q psy14065 194 LGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYML 273 (492)
Q Consensus 194 ~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s~RN~~~G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~~l~ 273 (492)
.++.|. +.+. |-+++....+.- + |..+ ..+.+.+.|.+..++.+++ +.-|--|.+.+. .+
T Consensus 181 ~a~~ea---~~~~--Gl~~~~a~~~~~--~---~~~g-----s~~l~~~~~~~~~~l~~~v----~spgG~t~~~l~-~l 240 (266)
T PLN02688 181 EALADG---GVAA--GLPRDVALSLAA--Q---TVLG-----AAKMVLETGKHPGQLKDMV----TSPGGTTIAGVH-EL 240 (266)
T ss_pred HHHHHH---HHHc--CCCHHHHHHHHH--H---HHHH-----HHHHHHhcCCCHHHHHHhC----CCCchHHHHHHH-HH
Confidence 566665 7777 888887765311 0 0001 1233444577777776655 333334444443 45
Q ss_pred HhcCCCCCCchhhhhHHhh
Q psy14065 274 KNKNMENKFPLFTAVHKIC 292 (492)
Q Consensus 274 ~~~~l~~~~PI~~av~~Il 292 (492)
++.++. -.+..++.+..
T Consensus 241 ~~~g~~--~~~~~a~~~~~ 257 (266)
T PLN02688 241 EKGGFR--AALMNAVVAAA 257 (266)
T ss_pred HHCChH--HHHHHHHHHHH
Confidence 556763 45666665553
No 47
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=98.55 E-value=2.2e-06 Score=86.63 Aligned_cols=227 Identities=12% Similarity=0.122 Sum_probs=138.1
Q ss_pred eEEecCHHHHhccCCEEEEecC-hHHHHHHH---HHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEEE
Q psy14065 36 VVAVPDVVEAAKDADILVFVVP-HQFIVRLC---SQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVL 111 (492)
Q Consensus 36 I~at~dl~~al~~aDiIilaVP-s~~~~~vl---~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~vl 111 (492)
+..+++++++++++|+||+|+| +..++.++ +.+.+.+++++++|.++.. .+ .+.+.+.+.+.+ ....++
T Consensus 46 ~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~-~~---~~~~~l~~~~~~---~g~~~~ 118 (296)
T PRK11559 46 AETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSI-AP---LASREIAAALKA---KGIEML 118 (296)
T ss_pred CeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCC-CH---HHHHHHHHHHHH---cCCcEE
Confidence 4567788899999999999999 55677776 5577777778888766543 22 233333333332 233445
Q ss_pred eCcChHHHHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHHH
Q psy14065 112 MGANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAV 191 (492)
Q Consensus 112 sGPn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal 191 (492)
..|-+..+-.....+..++.+-+++..+.++.+|..-..+++...+.-..+. +++-.|...+.
T Consensus 119 d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~-----------------~Kl~~n~~~~~ 181 (296)
T PRK11559 119 DAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNV-----------------TKLANQVIVAL 181 (296)
T ss_pred EcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEEeCCcCHHHH-----------------HHHHHHHHHHH
Confidence 5565543332222233344444677788888888755445554334322333 37778888888
Q ss_pred HHHHHHHHHHHHHHHCCCCCccccccccccchhhhhccCCCCHHH---HHHHHhCCCChHHHHHHhcCCceeec-chhHH
Q psy14065 192 IRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKV---SEAFVKTGKSIKDLEDEMLNGQKLQG-PFTAD 267 (492)
Q Consensus 192 ~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s~RN~~~---G~~l~~~G~~~~~~~~~~~~g~~~EG-~~t~~ 267 (492)
....++|+..+++.. |.+++++... + -+... +.+-+ +.++.+ + .+. .+..++- .+++.
T Consensus 182 ~~~~~~Ea~~l~~~~--Gi~~~~~~~~--l----~~~~~-~s~~~~~~~~~~~~-~-d~~-------~~f~~~~~~KDl~ 243 (296)
T PRK11559 182 NIAAMSEALVLATKA--GVNPDLVYQA--I----RGGLA-GSTVLDAKAPMVMD-R-NFK-------PGFRIDLHIKDLA 243 (296)
T ss_pred HHHHHHHHHHHHHHc--CCCHHHHHHH--H----hcCcc-cCHHHHhhchHhhc-C-CCC-------CCcchHHHHHHHH
Confidence 889999999999999 9999887741 1 11111 22111 122322 1 111 1222211 46788
Q ss_pred HHHHHHHhcCCCCCCchhhhhHHhh-------cCCCChHHHHHHHh
Q psy14065 268 EVNYMLKNKNMENKFPLFTAVHKIC-------IGEMKPQQFIDAIR 306 (492)
Q Consensus 268 ~v~~l~~~~~l~~~~PI~~av~~Il-------~~~~~p~~~i~~L~ 306 (492)
.+.+++++.++. +|+...++++. +++.+...+++.+.
T Consensus 244 ~~~~~a~~~g~~--~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~ 287 (296)
T PRK11559 244 NALDTSHGVGAP--LPLTAAVMEMMQALKADGLGTADHSALACYYE 287 (296)
T ss_pred HHHHHHHHcCCC--ChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHH
Confidence 899999999994 99999988775 23455555555443
No 48
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.45 E-value=2.4e-06 Score=84.83 Aligned_cols=199 Identities=16% Similarity=0.104 Sum_probs=124.7
Q ss_pred CeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCC-ceEEEeC
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKI-KMTVLMG 113 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~-~~~vlsG 113 (492)
++.+++|.+++++++|+||+|||++.+.++++++. +.+++++||++-|+.. +.+++.++. ...++.+
T Consensus 48 ~~~~~~~~~~~~~~aDvVilav~p~~~~~vl~~l~--~~~~~~vis~~ag~~~----------~~l~~~~~~~~~~~r~~ 115 (258)
T PRK06476 48 KVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLRALR--FRPGQTVISVIAATDR----------AALLEWIGHDVKLVRAI 115 (258)
T ss_pred CceEeCCHHHHHHhCCEEEEEeCHHHHHHHHHHhc--cCCCCEEEEECCCCCH----------HHHHHHhCCCCCEEEEC
Confidence 35667889898999999999999999999999874 4567899999988886 788887763 4688999
Q ss_pred cChHHHHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHH-HHHHHHhhhcCCCcChHHHHH
Q psy14065 114 ANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIV-ACGAGFVDGLGLGDNTKAAVI 192 (492)
Q Consensus 114 Pn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~-AIa~Gi~~gl~~g~N~~aal~ 192 (492)
||++.....+. +.+ .. + .+.++++|+.-.-.++.. |. ..+|.| |++++ .+.+
T Consensus 116 P~~~~a~~~g~-t~~--~~-~---~~~~~~l~~~lG~~~~~~-~e-------~~~d~~~a~~s~------------~a~~ 168 (258)
T PRK06476 116 PLPFVAERKGV-TAI--YP-P---DPFVAALFDALGTAVECD-SE-------EEYDLLAAASAL------------MATY 168 (258)
T ss_pred CCChhhhCCCC-eEe--cC-C---HHHHHHHHHhcCCcEEEC-Ch-------Hhccceeehhcc------------HHHH
Confidence 99998876654 443 22 1 257778887555444433 22 122222 33222 2334
Q ss_pred HHHHHHHHHHHHHHCCCCCccccccccccchhhhhccCCCCHHHHHH-HHhCCCChHHHHHHhcCCceeecchhHHHHHH
Q psy14065 193 RLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKVSEA-FVKTGKSIKDLEDEMLNGQKLQGPFTADEVNY 271 (492)
Q Consensus 193 t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s~RN~~~G~~-l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~~ 271 (492)
...+.|+...+++. |-++++...+ +..++. ...+. +.+.+.+.+++.+++ +--|--|.+.+..
T Consensus 169 ~~~~~~~~~~~~~~--Gl~~~~a~~~--~~~~~~--------G~~~l~~~~~~~~~~~l~~~v----~spgGtT~~gl~~ 232 (258)
T PRK06476 169 FGILETATGWLEEQ--GLKRQKARAY--LAPLFA--------SLAQDAVRSTKTDFSALSREF----STKGGLNEQVLND 232 (258)
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHH--HHHHHH--------HHHHHHHhcCCCCHHHHHHhC----CCCCchHHHHHHH
Confidence 45789999999999 8888766542 211111 11223 234456777777665 3334444455443
Q ss_pred HHHhcCCCCCCchhhhhHHh
Q psy14065 272 MLKNKNMENKFPLFTAVHKI 291 (492)
Q Consensus 272 l~~~~~l~~~~PI~~av~~I 291 (492)
+++.++. -.+..++...
T Consensus 233 -le~~~~~--~~~~~a~~aa 249 (258)
T PRK06476 233 -FSRQGGY--AALTDALDRV 249 (258)
T ss_pred -HHHCChH--HHHHHHHHHH
Confidence 3445652 3444444443
No 49
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.44 E-value=7.1e-07 Score=84.55 Aligned_cols=130 Identities=22% Similarity=0.329 Sum_probs=91.7
Q ss_pred cHHHHHHHHHcCCCCCCCCCCC-C------CCCeEEecCHHHHhccCCEEEEecChH----------HHHHHHHHhhccC
Q psy14065 10 GKKLTEIINETHENVKYLPGHK-L------PPNVVAVPDVVEAAKDADILVFVVPHQ----------FIVRLCSQLLGKI 72 (492)
Q Consensus 10 ~~~~~~~in~~~~N~~ylp~i~-l------~~~I~at~dl~~al~~aDiIilaVPs~----------~~~~vl~~l~~~l 72 (492)
+++.++.+| +++.|.+.|++. + ..++++++|.+++++++|++|+|||++ ++.+++++|.+++
T Consensus 32 ~~~~v~~l~-~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l 110 (185)
T PF03721_consen 32 DEEKVEALN-NGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVL 110 (185)
T ss_dssp -HHHHHHHH-TTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHH
T ss_pred ChHHHHHHh-hccccccccchhhhhccccccccchhhhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHH
Confidence 356789999 477788888874 2 468999999999999999999999875 6999999999999
Q ss_pred CCCCeEEEEEccceeccCCccc-cHHHHHHhHhC--CceEEEeCcChHHHHhh----cCCceEEEeecCcchHHHHHHH
Q psy14065 73 KPDAVGLSLIKGFDRAEGGGID-LISHIITRNLK--IKMTVLMGANLAGEVAE----EKFCETTIGCKDKTLGPLLHAL 144 (492)
Q Consensus 73 ~~~~~iIs~~KGl~~~~~~t~~-~~se~i~e~l~--~~~~vlsGPn~A~Ev~~----~~pt~vvias~~~~~~~~v~~l 144 (492)
.+++ +.+.|...++ +|.+ .+..++++.-. ..+.+...|.|..|... ..|..++++..++...+.+++|
T Consensus 111 ~~~~--lvV~~STvpp--Gtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~~d~~~~~rvV~G~~~~~~~~~~~~l 185 (185)
T PF03721_consen 111 RPGD--LVVIESTVPP--GTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAIEDFRNPPRVVGGCDDESAEERLKEL 185 (185)
T ss_dssp CSCE--EEEESSSSST--THHHHHHHHHHHHHCCTTTCEEEEE------TTSHHHHHHSSSEEEEEESSHHHHHHHHHH
T ss_pred hhcc--eEEEccEEEE--eeehHhhhhhhhhhcccccCCeEEECCCccCCCCcchhccCCCEEEEeCCcHHHHHHHhcC
Confidence 8877 4477888875 6655 45555555443 46899999999988766 7788999999887776677764
No 50
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=98.38 E-value=7.5e-06 Score=83.14 Aligned_cols=224 Identities=10% Similarity=0.036 Sum_probs=134.5
Q ss_pred eEEecCHHHHhccCCEEEEecChH-HHHHHHHH---hhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCce---
Q psy14065 36 VVAVPDVVEAAKDADILVFVVPHQ-FIVRLCSQ---LLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKM--- 108 (492)
Q Consensus 36 I~at~dl~~al~~aDiIilaVPs~-~~~~vl~~---l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~--- 108 (492)
+..++++.++++++|+||+|+|++ .++.++.. +.+++++++++|.++++-.. +.+.+.+.+.+. +..+
T Consensus 45 ~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~----~~~~l~~~l~~~-g~~~lda 119 (296)
T PRK15461 45 ATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPL----QTDKLIADMQAK-GFSMMDV 119 (296)
T ss_pred CcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHH----HHHHHHHHHHHc-CCcEEEc
Confidence 345678888999999999999998 58888753 45567778888888776432 333333333322 2221
Q ss_pred EEEeCcChHHHHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChH
Q psy14065 109 TVLMGANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTK 188 (492)
Q Consensus 109 ~vlsGPn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~ 188 (492)
-+..||.-|. .+. -+++.+-+++..+.++.+|+.-.-+++...++ | ....+++-.|..
T Consensus 120 pV~g~~~~a~---~g~--l~~~~gg~~~~~~~~~p~l~~~g~~~~~~g~~-G----------------~g~~~Kl~~N~~ 177 (296)
T PRK15461 120 PVGRTSDNAI---TGT--LLLLAGGTAEQVERATPILMAMGNELINAGGP-G----------------MGIRVKLINNYM 177 (296)
T ss_pred cCCCCHHHHH---hCc--EEEEECCCHHHHHHHHHHHHHHcCCeEeeCCC-C----------------HHHHHHHHHHHH
Confidence 1223333332 333 33445556777888888886443345554442 2 122247788988
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCccccccccccchhhhhccCCCCH----HHHHHHHhCCCChHHHHHHhcCCceeecch
Q psy14065 189 AAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNR----KVSEAFVKTGKSIKDLEDEMLNGQKLQGPF 264 (492)
Q Consensus 189 aal~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s~RN~----~~G~~l~~~G~~~~~~~~~~~~g~~~EG~~ 264 (492)
......++.|...++++. |-++++++.. +-.. +..+. ++...+.+...+.....+- ..+
T Consensus 178 ~~~~~~~~~Ea~~l~~~~--Gld~~~~~~~------l~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~~--------~~K 240 (296)
T PRK15461 178 SIALNALSAEAAVLCEAL--GLSFDVALKV------MSGT-AAGKGHFTTTWPNKVLKGDLSPAFMIDL--------AHK 240 (296)
T ss_pred HHHHHHHHHHHHHHHHHc--CCCHHHHHHH------HhcC-cccChHHHccccchhccCCCCCCcchHH--------HHh
Confidence 888889999999999999 9999887642 1111 11111 1122233212221111111 157
Q ss_pred hHHHHHHHHHhcCCCCCCchhhhhHHhhc-------CCCChHHHHHHH
Q psy14065 265 TADEVNYMLKNKNMENKFPLFTAVHKICI-------GEMKPQQFIDAI 305 (492)
Q Consensus 265 t~~~v~~l~~~~~l~~~~PI~~av~~Il~-------~~~~p~~~i~~L 305 (492)
+++.+.+++++.++ ++|+...+.++.. ++.+...+++.+
T Consensus 241 D~~l~~~~a~~~g~--~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 286 (296)
T PRK15461 241 DLGIALDVANQLHV--PMPLGAASREVYSQARAAGRGRQDWSAILEQV 286 (296)
T ss_pred hHHHHHHHHHHcCC--CChHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Confidence 88999999999999 4999998877752 234445555544
No 51
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.37 E-value=5.2e-06 Score=85.71 Aligned_cols=229 Identities=16% Similarity=0.170 Sum_probs=165.5
Q ss_pred HHHHHHHHHcCCCCCCCCCCC--C-----CCCeEEecCHHHHhccCCEEEEecChH----------HHHHHHHHhhccCC
Q psy14065 11 KKLTEIINETHENVKYLPGHK--L-----PPNVVAVPDVVEAAKDADILVFVVPHQ----------FIVRLCSQLLGKIK 73 (492)
Q Consensus 11 ~~~~~~in~~~~N~~ylp~i~--l-----~~~I~at~dl~~al~~aDiIilaVPs~----------~~~~vl~~l~~~l~ 73 (492)
+..++.+|. +++..-.|++. + ..++++|+|.++ ++.||++|+|||++ ++++..+.|+++|+
T Consensus 42 ~~~Vd~ln~-G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~ 119 (436)
T COG0677 42 QKKVDKLNR-GESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLK 119 (436)
T ss_pred HHHHHHHhC-CcceeecCcHHHHHHHHHhcCCceEecChhh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcC
Confidence 456899995 55555456654 1 457999999988 57999999999995 89999999999999
Q ss_pred CCCeEEEEEccceeccCCccccHHHHHHhH-hC----CceEE-----EeCcChH-HHHhhcCCceEEEeecCcchHHHHH
Q psy14065 74 PDAVGLSLIKGFDRAEGGGIDLISHIITRN-LK----IKMTV-----LMGANLA-GEVAEEKFCETTIGCKDKTLGPLLH 142 (492)
Q Consensus 74 ~~~~iIs~~KGl~~~~~~t~~~~se~i~e~-l~----~~~~v-----lsGPn~A-~Ev~~~~pt~vvias~~~~~~~~v~ 142 (492)
+++.+| .-+..++ +|-+-+...+.|. .+ ..+.+ +..|... .|+. ..| =+|++.+++.++..+
T Consensus 120 kG~LVI--lEST~~P--GTTe~v~~plle~~sgL~~~~Df~laysPERv~PG~~~~el~-~~~--kVIgG~tp~~~e~a~ 192 (436)
T COG0677 120 KGDLVI--LESTTPP--GTTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPGNVLKELV-NNP--KVIGGVTPKCAELAA 192 (436)
T ss_pred CCCEEE--EecCCCC--CcHHHHHHHHHhhcCCCcccceeeEeeCccccCCCchhhhhh-cCC--ceeecCCHHHHHHHH
Confidence 999654 4445553 6666666666665 22 23333 3455444 4444 443 678999999999999
Q ss_pred HHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHHHHHHHHHCCCCCccccccccccc
Q psy14065 143 ALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVA 222 (492)
Q Consensus 143 ~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~glaGlG 222 (492)
.++++---.+.+-+|...+|.+ ++-+|++=..=..-.|||..+|.+| |-|.-.+..+|.=
T Consensus 193 ~lY~~iv~~~~~vts~~tAEm~-----------------Kl~EN~fRdVNIALaNElali~~~~--GIdvwevIeaAnt- 252 (436)
T COG0677 193 ALYKTIVEGVIPVTSARTAEMV-----------------KLTENTFRDVNIALANELALICNAM--GIDVWEVIEAANT- 252 (436)
T ss_pred HHHHHheEEEEEcCChHHHHHH-----------------HHHhhhhhHHHHHHHHHHHHHHHHh--CCcHHHHHHHhcc-
Confidence 9998877778999999999998 8888888888888899999999999 9988666664321
Q ss_pred hhhhhccCCCCHHHHHHHHhCCCChHHHHHHhcCCceeecchhHHHHHHHHHhcCCCCCCchhhhhHHhh
Q psy14065 223 DLITTCYGGRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKIC 292 (492)
Q Consensus 223 Dl~~Tc~s~RN~~~G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~~l~~~~~l~~~~PI~~av~~Il 292 (492)
.+| ..+-++|-.+. |+|+ +.+=--+...+++|+.+ ..++++..+|+
T Consensus 253 -------~P~-----~~~~~PGpGvG--------GHCI--pvDP~fl~~ka~~yg~~--~rlI~tAreIN 298 (436)
T COG0677 253 -------KPR-----VNIFYPGPGVG--------GHCI--PVDPYFLTWKAPEYGLP--ARLIRTAREIN 298 (436)
T ss_pred -------CCc-----eeecCCCCCCC--------Cccc--ccCchheeecccccCCc--hHHHHHHHHHh
Confidence 122 33445565554 7777 44444555667777774 78888887773
No 52
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.34 E-value=4.3e-06 Score=85.59 Aligned_cols=126 Identities=16% Similarity=0.192 Sum_probs=93.0
Q ss_pred CeEEecCHHHHhccCCEEEEecChH-HHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCc-eEEEe
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQ-FIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIK-MTVLM 112 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~-~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~-~~vls 112 (492)
+++++ ++.+++++||+|+++||++ ....++++++++++++. +||++.|+.+ +.+++.++.. -+++.
T Consensus 47 Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~~ei~~~l~~g~-iVs~aaG~~i----------~~~~~~~~~~~~Vvrv 114 (314)
T TIGR00465 47 GFKVG-TVEEAIPQADLIMNLLPDEVQHEVYEAEIQPLLKEGK-TLGFSHGFNI----------HFVQIVPPKDVDVVMV 114 (314)
T ss_pred CCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHHHHHHhhCCCCc-EEEEeCCccH----------hhccccCCCCCcEEEE
Confidence 45544 5788899999999999999 88888888999887664 8999999998 5666667643 58999
Q ss_pred CcChHHH-H------hhcCCceEEEe-ecCcchHHHHHHHhcCC----------CceEEEcCCcchhh--hhhhhHHHHH
Q psy14065 113 GANLAGE-V------AEEKFCETTIG-CKDKTLGPLLHALLQTP----------NFRVSVVDDVDAVE--ICGALKNIVA 172 (492)
Q Consensus 113 GPn~A~E-v------~~~~pt~vvia-s~~~~~~~~v~~lf~~~----------~f~v~~~~D~~GvE--l~galKNv~A 172 (492)
+||.+.. | .+|.|+.+.+. ..+.+..+.+..+|++- +|+..+.+|..+.. +||..--.+.
T Consensus 115 mPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~ 194 (314)
T TIGR00465 115 APKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIK 194 (314)
T ss_pred CCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHH
Confidence 9999999 4 88986544333 33456666777777543 34457778998888 6665544433
No 53
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.20 E-value=4.3e-05 Score=78.12 Aligned_cols=223 Identities=13% Similarity=0.103 Sum_probs=141.9
Q ss_pred eEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCC-ce------
Q psy14065 36 VVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKI-KM------ 108 (492)
Q Consensus 36 I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~-~~------ 108 (492)
+.++++.+ .....|+||+|||+.++.++++.+++++.++.+++++..|+... +.+.+.++. ++
T Consensus 61 ~~~~~~~~-~~~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~---------e~l~~~~~~~~v~~g~~~ 130 (313)
T PRK06249 61 VQAYRSAE-DMPPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVE---------EQLREILPAEHLLGGLCF 130 (313)
T ss_pred ceEEcchh-hcCCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcH---------HHHHHHCCCCcEEEEeee
Confidence 45566654 46789999999999999999999999998888999999999862 667777652 21
Q ss_pred --EEEeCcChHHHHhhcCCceEEEeecC--------cchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHh
Q psy14065 109 --TVLMGANLAGEVAEEKFCETTIGCKD--------KTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFV 178 (492)
Q Consensus 109 --~vlsGPn~A~Ev~~~~pt~vvias~~--------~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~ 178 (492)
+.+.+|.+..-- -+..+.++..+ .+..+.+.++|+...+.+..++|+...-|.=.+=|+.--+...+
T Consensus 131 ~~a~~~~pg~v~~~---~~g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal 207 (313)
T PRK06249 131 ICSNRVGPGVIHHL---AYGRVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVL 207 (313)
T ss_pred EeEecCCCeEEEEC---CCCcEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHH
Confidence 234566543322 22346666433 24456788999999999999999999999744434322223333
Q ss_pred hhcCCC---cC-hHHHHHHHHHHHHHHHHHHHCCCCCccccccccccchhhhhccC-CCC-HHHHHHHHhCCCChHHHHH
Q psy14065 179 DGLGLG---DN-TKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYG-GRN-RKVSEAFVKTGKSIKDLED 252 (492)
Q Consensus 179 ~gl~~g---~N-~~aal~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s-~RN-~~~G~~l~~~G~~~~~~~~ 252 (492)
-+...| .+ ..-.++.+.++|...++++. |-+.+... +-..+-.|.. +.| .+.=+.+-+ |.+
T Consensus 208 ~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~--Gi~~~~~~----~~~~~~~~~~~~~~~sSM~qD~~~-gr~------ 274 (313)
T PRK06249 208 LNASTDPLMADPDSRALIRALMAEVIQGAAAC--GHTLPEGY----ADHMLAVTERMPDYRPSMYHDFEE-GRP------ 274 (313)
T ss_pred hCCChHHHHhCccHHHHHHHHHHHHHHHHHhc--CCCCChhH----HHHHHHHhhcCCCCCChHHHHHHC-CCc------
Confidence 334333 22 23478999999999999999 75432110 0001111111 111 111123332 322
Q ss_pred HhcCCceeecchhHHHHHHHHHhcCCCCCCchhhhhHHhhc
Q psy14065 253 EMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICI 293 (492)
Q Consensus 253 ~~~~g~~~EG~~t~~~v~~l~~~~~l~~~~PI~~av~~Il~ 293 (492)
-|==.-.-.+.++++++|+. .|..+.+|..+.
T Consensus 275 -------tEid~i~G~vv~~a~~~Gi~--~P~~~~l~~~l~ 306 (313)
T PRK06249 275 -------LELEAIYANPLAAARAAGCA--MPRVEMLYQALE 306 (313)
T ss_pred -------ccHHHHhhHHHHHHHHhCCC--CcHHHHHHHHHH
Confidence 22122356788999999994 999999998754
No 54
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=98.10 E-value=6.2e-05 Score=77.39 Aligned_cols=157 Identities=18% Similarity=0.258 Sum_probs=105.0
Q ss_pred CeEEecCHHHHhccCCEEEEecChHHHHHHH-HHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCc-eEEEe
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQFIVRLC-SQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIK-MTVLM 112 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~~~~~vl-~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~-~~vls 112 (492)
++... |.++++++||+|+++||++....++ +++.++++++++| +++-|+.+ +..+...+.. -+++.
T Consensus 61 G~~~~-s~~eaa~~ADVVvLaVPd~~~~~V~~~~I~~~Lk~g~iL-~~a~G~~i----------~~~~~~p~~~~~Vi~v 128 (330)
T PRK05479 61 GFEVL-TVAEAAKWADVIMILLPDEVQAEVYEEEIEPNLKEGAAL-AFAHGFNI----------HFGQIVPPADVDVIMV 128 (330)
T ss_pred CCeeC-CHHHHHhcCCEEEEcCCHHHHHHHHHHHHHhcCCCCCEE-EECCCCCh----------hhceeccCCCCcEEEe
Confidence 34443 8899999999999999999999999 8899999877765 89999887 3444444432 48888
Q ss_pred CcChHHH-------HhhcCCceEEEe-ecCcchHHHHHHHhcC---C-------CceEEEcCCcchhh--hhhhhHHHHH
Q psy14065 113 GANLAGE-------VAEEKFCETTIG-CKDKTLGPLLHALLQT---P-------NFRVSVVDDVDAVE--ICGALKNIVA 172 (492)
Q Consensus 113 GPn~A~E-------v~~~~pt~vvia-s~~~~~~~~v~~lf~~---~-------~f~v~~~~D~~GvE--l~galKNv~A 172 (492)
+||.+.. +.+|.|..+.+. ..+.+..+.+..+|+. . +|+--+-+|+.|-+ +||.+--++.
T Consensus 129 aPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~ 208 (330)
T PRK05479 129 APKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIK 208 (330)
T ss_pred CCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHH
Confidence 9999999 888986555333 2235555666666643 2 34555668888876 3554444444
Q ss_pred HHHHHhhhcCCCcChHHHHHHHHHHHHHHHHHHH
Q psy14065 173 CGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELF 206 (492)
Q Consensus 173 Ia~Gi~~gl~~g~N~~aal~t~g~~Em~~l~~~~ 206 (492)
.+.-.+...+| .-..|++ -.+.||..+...+
T Consensus 209 ~~~e~l~eaG~--~pe~Ay~-e~~~e~k~i~dl~ 239 (330)
T PRK05479 209 AGFETLVEAGY--QPEMAYF-ECLHELKLIVDLI 239 (330)
T ss_pred HHHHHHHHcCC--CHHHHHH-HHHHHHHHHHHHH
Confidence 44444443333 3333433 4578887666655
No 55
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.98 E-value=0.00016 Score=73.83 Aligned_cols=207 Identities=12% Similarity=0.089 Sum_probs=133.0
Q ss_pred hccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCC-ce--------EEEeCcCh
Q psy14065 46 AKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKI-KM--------TVLMGANL 116 (492)
Q Consensus 46 l~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~-~~--------~vlsGPn~ 116 (492)
....|+||+||++..+.++++++++++.++.+||++-=|+... +.+.+.++. ++ +.+-+|..
T Consensus 68 ~~~~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~---------e~l~~~~~~~~v~~g~~~~ga~~~~pg~ 138 (305)
T PRK05708 68 AEPIHRLLLACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQ---------DAVAARVPHARCIFASSTEGAFRDGDWR 138 (305)
T ss_pred ccccCEEEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCH---------HHHHHhCCCCcEEEEEeeeceecCCCCE
Confidence 4678999999999999999999999999999999999999862 566677663 21 11224543
Q ss_pred HHHHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhc---CCC---cChHHH
Q psy14065 117 AGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGL---GLG---DNTKAA 190 (492)
Q Consensus 117 A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl---~~g---~N~~aa 190 (492)
-..-. ...+.++..+.+..+.+.++|+...+.+..++|+.+.-|. |=++-.+..-+..+ ..| .+. .
T Consensus 139 v~~~~---~g~~~~G~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~---Kl~~N~~~N~ltal~~~~~g~l~~~~--~ 210 (305)
T PRK05708 139 VVFAG---HGFTWLGDPRNPTAPAWLDDLREAGIPHEWTVDILTRLWR---KLALNCAINPLTVLHDCRNGGLLEHA--Q 210 (305)
T ss_pred EEEec---eEEEEEcCCCCcchHHHHHHHHhcCCCCccCHHHHHHHHH---HHHHHccccHhHHhhCCCCcchhcCH--H
Confidence 32222 2235566555566788889999889999999999999996 54444433333333 333 221 5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCccc--cccccccchhhh-hccC-CCCH-HHHHHHHhCCCChHHHHHHhcCCceeecchh
Q psy14065 191 VIRLGLMEMVKFTELFYPGAKSAT--FFESCGVADLIT-TCYG-GRNR-KVSEAFVKTGKSIKDLEDEMLNGQKLQGPFT 265 (492)
Q Consensus 191 l~t~g~~Em~~l~~~~~~G~~~~t--~~glaGlGDl~~-Tc~s-~RN~-~~G~~l~~~G~~~~~~~~~~~~g~~~EG~~t 265 (492)
++..-++|+..++++. |..... +.. .+. .+.. +.|+ +.=+.+. +|.-.|==.-
T Consensus 211 ~~~~l~~E~~~va~a~--G~~~~~~~~~~------~~~~~~~~~~~~~sSM~qD~~--------------~gR~tEid~i 268 (305)
T PRK05708 211 EVAALCAELSELLRRC--GQPAAAANLHE------EVQRVIQATAANYSSMYQDVR--------------AGRRTEISYL 268 (305)
T ss_pred HHHHHHHHHHHHHHHc--CCCccHHHHHH------HHHHHHHhccCCCcHHHHHHH--------------cCCceeehhh
Confidence 7788899999999999 754221 111 000 0000 0111 1222222 2333333334
Q ss_pred HHHHHHHHHhcCCCCCCchhhhhHHhhc
Q psy14065 266 ADEVNYMLKNKNMENKFPLFTAVHKICI 293 (492)
Q Consensus 266 ~~~v~~l~~~~~l~~~~PI~~av~~Il~ 293 (492)
.-.+.++++++|+. .|....+|..+.
T Consensus 269 ~G~vvr~a~~~Gv~--~P~~~~l~~~v~ 294 (305)
T PRK05708 269 LGYACRAADRHGLP--LPRLQHLQQRLV 294 (305)
T ss_pred hhHHHHHHHHcCCC--CchHHHHHHHHH
Confidence 56788999999994 999999987743
No 56
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=97.92 E-value=0.00012 Score=74.33 Aligned_cols=215 Identities=10% Similarity=0.038 Sum_probs=125.4
Q ss_pred CeEEecCHHHHhccCCEEEEecChH-HHHHHHHH---hhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEE
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQ-FIVRLCSQ---LLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTV 110 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~-~~~~vl~~---l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~v 110 (492)
+.....+..++++++|+||+|||.. .+++++.. +.+.+.+++++|.++. +.| .+.+.+.+.+.+. +. .+
T Consensus 42 g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT-~~p---~~~~~~~~~~~~~-G~--~~ 114 (292)
T PRK15059 42 GAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSS-ISP---IETKRFARQVNEL-GG--DY 114 (292)
T ss_pred CCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCC-CCH---HHHHHHHHHHHHc-CC--CE
Confidence 3455678888899999999999976 67777743 4444556777665542 333 2333344444332 22 22
Q ss_pred EeCcChHHHHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHH
Q psy14065 111 LMGANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAA 190 (492)
Q Consensus 111 lsGPn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aa 190 (492)
+..|-.-.......-+-.++.+-+++..+.++.+|+.-.-+++.-.+. | -+-+ +++-.|...+
T Consensus 115 vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~~~G~~-G--~g~~--------------~Kl~~N~l~~ 177 (292)
T PRK15059 115 LDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGN-G--DGQT--------------CKVANQIIVA 177 (292)
T ss_pred EEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcEEeCCc-c--HHHH--------------HHHHHHHHHH
Confidence 333433333322221223333446777888888886443334333332 2 2222 3566788888
Q ss_pred HHHHHHHHHHHHHHHHCCCCCccccccccccchhhhhccCCCCHHH---HHHHHhCCCChHHHHHHhcCCceeecchhHH
Q psy14065 191 VIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKV---SEAFVKTGKSIKDLEDEMLNGQKLQGPFTAD 267 (492)
Q Consensus 191 l~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s~RN~~~---G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~ 267 (492)
....++.|...|+++. |-++++++.. +.+. +.+++-+ +.++.....+.....+ -..++++
T Consensus 178 ~~~~a~~Ea~~la~~~--Gld~~~~~~~------l~~~-~~~s~~~~~~~~~~~~~~~~~~f~l~--------~~~KDl~ 240 (292)
T PRK15059 178 LNIEAVSEALLFASKA--GADPVRVRQA------LMGG-FASSRILEVHGERMIKRTFNPGFKIA--------LHQKDLN 240 (292)
T ss_pred HHHHHHHHHHHHHHHc--CCCHHHHHHH------HHcC-cccCHHHHhhchhhhcCCCCCCCchH--------HHHHHHH
Confidence 7888999999999999 9999987752 1111 1133222 2334331222111111 1257889
Q ss_pred HHHHHHHhcCCCCCCchhhhhHHhh
Q psy14065 268 EVNYMLKNKNMENKFPLFTAVHKIC 292 (492)
Q Consensus 268 ~v~~l~~~~~l~~~~PI~~av~~Il 292 (492)
.+.+++++.++ ++|+...+.++.
T Consensus 241 l~~~~a~~~g~--~~p~~~~~~~~~ 263 (292)
T PRK15059 241 LALQSAKALAL--NLPNTATCQELF 263 (292)
T ss_pred HHHHHHHHcCC--CChHHHHHHHHH
Confidence 99999999999 499998887765
No 57
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.90 E-value=7.9e-05 Score=75.94 Aligned_cols=144 Identities=17% Similarity=0.148 Sum_probs=103.5
Q ss_pred CCeEEecCHHHHhccCCEEEEecChHH--HHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCC-ceEE
Q psy14065 34 PNVVAVPDVVEAAKDADILVFVVPHQF--IVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKI-KMTV 110 (492)
Q Consensus 34 ~~I~at~dl~~al~~aDiIilaVPs~~--~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~-~~~v 110 (492)
.++++++|++++++++|+||+|||++. .+.+++++.++++++++|+|.+.|+.. +.+.+.++. .-++
T Consensus 65 ~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~----------~~l~~~~~~~~~~i 134 (311)
T PRK06130 65 GRIRMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPI----------TAIAQAVTRPERFV 134 (311)
T ss_pred hceEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCH----------HHHHhhcCCcccEE
Confidence 457889999998999999999999874 788999999988878887788888765 455566642 3466
Q ss_pred EeCcChHHHHhhcCCceEEEeec--CcchHHHHHHHhcCCCceEEEc-CCcchhhhhhhhHHHHHHHHHHhhhcCCCcCh
Q psy14065 111 LMGANLAGEVAEEKFCETTIGCK--DKTLGPLLHALLQTPNFRVSVV-DDVDAVEICGALKNIVACGAGFVDGLGLGDNT 187 (492)
Q Consensus 111 lsGPn~A~Ev~~~~pt~vvias~--~~~~~~~v~~lf~~~~f~v~~~-~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~ 187 (492)
...|+.+..+.. ...+ +.+. +++..+.++++|+.-.-+++.. .|..|. + ..|.
T Consensus 135 g~h~~~p~~~~~--l~~i-~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~-i--------------------~nr~ 190 (311)
T PRK06130 135 GTHFFTPADVIP--LVEV-VRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGF-I--------------------ANRI 190 (311)
T ss_pred EEccCCCCccCc--eEEE-eCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCc-H--------------------HHHH
Confidence 778888876544 2333 3333 5788899999998777665555 577655 1 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCcccccc
Q psy14065 188 KAAVIRLGLMEMVKFTELFYPGAKSATFFE 217 (492)
Q Consensus 188 ~aal~t~g~~Em~~l~~~~~~G~~~~t~~g 217 (492)
+...++|..++.+.- |.+++.+..
T Consensus 191 ----~~~~~~Ea~~l~~~g--~~~~~~id~ 214 (311)
T PRK06130 191 ----QHALAREAISLLEKG--VASAEDIDE 214 (311)
T ss_pred ----HHHHHHHHHHHHHcC--CCCHHHHHH
Confidence 234589999998876 778877654
No 58
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=97.86 E-value=0.00046 Score=70.60 Aligned_cols=241 Identities=18% Similarity=0.172 Sum_probs=153.5
Q ss_pred HHHHHHcCCCCCCCCCCCCCCCeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCcc
Q psy14065 14 TEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGI 93 (492)
Q Consensus 14 ~~~in~~~~N~~ylp~i~l~~~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~ 93 (492)
.+.+++++-......+ +. .....+.+..+....+|+||++|++.+++++++.++++++++..|+++==|+...
T Consensus 35 ~~~l~~~GL~i~~~~~-~~-~~~~~~~~~~~~~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~----- 107 (307)
T COG1893 35 LEALKKKGLRIEDEGG-NF-TTPVVAATDAEALGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHE----- 107 (307)
T ss_pred HHHHHhCCeEEecCCC-cc-ccccccccChhhcCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHH-----
Confidence 6778765332222222 11 2223333334556799999999999999999999999999999999888888752
Q ss_pred ccHHHHHHhHhCCc---------eEEEeCcChHHHHhhcCCceEEEeecCc---chHHHHHHHhcCCCceEEEcCCcchh
Q psy14065 94 DLISHIITRNLKIK---------MTVLMGANLAGEVAEEKFCETTIGCKDK---TLGPLLHALLQTPNFRVSVVDDVDAV 161 (492)
Q Consensus 94 ~~~se~i~e~l~~~---------~~vlsGPn~A~Ev~~~~pt~vvias~~~---~~~~~v~~lf~~~~f~v~~~~D~~Gv 161 (492)
|.+.+.++.. -+.+.||........+. +.++..+. +..+.+.++|+...+.+..++|+.-.
T Consensus 108 ----e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~---~~ig~~~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~ 180 (307)
T COG1893 108 ----EELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGD---TVIGELRGGRDELVKALAELFKEAGLEVELHPDILAA 180 (307)
T ss_pred ----HHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCc---EEEccCCCCchHHHHHHHHHHHhCCCCeEEcHHHHHH
Confidence 4555555421 35677777776666555 66664443 67899999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHhhhc---CCC---cC-hHHHHHHHHHHHHHHHHHHHCCCCCc-cc-cccccccchhhhhccCCC
Q psy14065 162 EICGALKNIVACGAGFVDGL---GLG---DN-TKAAVIRLGLMEMVKFTELFYPGAKS-AT-FFESCGVADLITTCYGGR 232 (492)
Q Consensus 162 El~galKNv~AIa~Gi~~gl---~~g---~N-~~aal~t~g~~Em~~l~~~~~~G~~~-~t-~~glaGlGDl~~Tc~s~R 232 (492)
.|- |.++-.+..=+..+ .+| .| -...++.+-+.|....+.+. |... +. +...-.+- ..+ +..
T Consensus 181 ~w~---Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~--g~~~~~~~~~~v~~~~---~~~-~~~ 251 (307)
T COG1893 181 IWR---KLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAE--GVELPEEVVERVLAVI---RAT-DAE 251 (307)
T ss_pred HHH---HHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhc--cCCCCHHHHHHHHHHH---Hhc-ccc
Confidence 885 66666655533333 332 44 34567888899999998888 6321 11 11100000 000 011
Q ss_pred CH-HHHHHHHhCCCChHHHHHHhcCCceeecchhHHHHHHHHHhcCCCCCCchhhhhHHhhc
Q psy14065 233 NR-KVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICI 293 (492)
Q Consensus 233 N~-~~G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~~l~~~~~l~~~~PI~~av~~Il~ 293 (492)
|+ ++=+.+.+ |. --|==.-.-.+.++++++|+. .|....+|..+.
T Consensus 252 ~~sSM~qDl~~-gr-------------~tEid~i~G~vv~~a~~~gi~--~P~~~~L~~lvk 297 (307)
T COG1893 252 NYSSMLQDLEK-GR-------------PTEIDAINGAVVRLAKKHGLA--TPVNDTLYALLK 297 (307)
T ss_pred cCchHHHHHHc-CC-------------cccHHHHhhHHHHHHHHhCCC--CcHHHHHHHHHH
Confidence 21 22233433 22 222222345678999999995 999999998854
No 59
>KOG3124|consensus
Probab=97.86 E-value=5.1e-05 Score=74.27 Aligned_cols=116 Identities=18% Similarity=0.151 Sum_probs=93.6
Q ss_pred CCeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCc-eEEEe
Q psy14065 34 PNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIK-MTVLM 112 (492)
Q Consensus 34 ~~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~-~~vls 112 (492)
..++.+.+..++++.+|+++++|.|+.+..++.++++.+...++++|+..|..+ ..+++.++.+ =+++.
T Consensus 47 ~g~~~~~~n~~~~~~s~v~~~svKp~~i~~vls~~~~~~~~~~iivS~aaG~tl----------~~l~~~l~~~~rviRv 116 (267)
T KOG3124|consen 47 LGVKTVFTNLEVLQASDVVFLSVKPQVIESVLSEIKPKVSKGKIIVSVAAGKTL----------SSLESKLSPPTRVIRV 116 (267)
T ss_pred CCceeeechHHHHhhccceeEeecchhHHHHhhcCccccccceEEEEEeecccH----------HHHHHhcCCCCceEEe
Confidence 455555555889999999999999999999999999987789999999999987 5666667633 49999
Q ss_pred CcChHHHHhhcCCceEEEe-ecCcchHHHHHHHhcCCCceEEEcCCcch
Q psy14065 113 GANLAGEVAEEKFCETTIG-CKDKTLGPLLHALLQTPNFRVSVVDDVDA 160 (492)
Q Consensus 113 GPn~A~Ev~~~~pt~vvia-s~~~~~~~~v~~lf~~~~f~v~~~~D~~G 160 (492)
|||.+.-+.++. +.++.+ ....++.+.++++|++-.|-.-.-+|.+-
T Consensus 117 mpNtp~~v~eg~-sv~~~g~~~~~~D~~l~~~ll~~vG~~~evpE~~iD 164 (267)
T KOG3124|consen 117 MPNTPSVVGEGA-SVYAIGCHATNEDLELVEELLSAVGLCEEVPEKCID 164 (267)
T ss_pred cCCChhhhhcCc-EEEeeCCCcchhhHHHHHHHHHhcCcceeCcHHhhh
Confidence 999999999998 555555 33356679999999988887766666543
No 60
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.84 E-value=8.6e-05 Score=80.79 Aligned_cols=153 Identities=14% Similarity=0.050 Sum_probs=107.7
Q ss_pred CCCCCCCCC--CCeEEecCHHHHhccCCEEEEecChHH--HHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHH
Q psy14065 25 KYLPGHKLP--PNVVAVPDVVEAAKDADILVFVVPHQF--IVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHII 100 (492)
Q Consensus 25 ~ylp~i~l~--~~I~at~dl~~al~~aDiIilaVPs~~--~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i 100 (492)
.+++...++ .++++++|+++++++||+||.|+|++. .+.+++++.++++++.+|.|.|.|+.+ ..+
T Consensus 55 ~~l~~~~~~~~g~i~~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~----------s~l 124 (495)
T PRK07531 55 AMLTDAPLPPEGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLP----------SDL 124 (495)
T ss_pred hhhccchhhhhhceEeeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH----------HHH
Confidence 344444332 358899999999999999999999985 566788888888888888899999886 344
Q ss_pred HhHhC-CceEEEeCcChHHHHhhcCCceEEEeec--CcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHH
Q psy14065 101 TRNLK-IKMTVLMGANLAGEVAEEKFCETTIGCK--DKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGF 177 (492)
Q Consensus 101 ~e~l~-~~~~vlsGPn~A~Ev~~~~pt~vvias~--~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi 177 (492)
.+.+. ....++..|+....+ .|-..++++. +++..+.++.+|+.-.-+++...
T Consensus 125 ~~~~~~~~r~~~~hP~nP~~~---~~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~--------------------- 180 (495)
T PRK07531 125 QEGMTHPERLFVAHPYNPVYL---LPLVELVGGGKTSPETIRRAKEILREIGMKPVHIA--------------------- 180 (495)
T ss_pred HhhcCCcceEEEEecCCCccc---CceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEeec---------------------
Confidence 55554 346788888776532 2444445544 46788888888876655555443
Q ss_pred hhhcCCCcChHHHHHHHH-HHHHHHHHHHHCCCCCcccccc
Q psy14065 178 VDGLGLGDNTKAAVIRLG-LMEMVKFTELFYPGAKSATFFE 217 (492)
Q Consensus 178 ~~gl~~g~N~~aal~t~g-~~Em~~l~~~~~~G~~~~t~~g 217 (492)
+.-+|..+.-+..+ ++|...|++.- |.+++.+..
T Consensus 181 ----k~~~gfi~nrl~~a~~~EA~~L~~~g--~~s~~~id~ 215 (495)
T PRK07531 181 ----KEIDAFVGDRLLEALWREALWLVKDG--IATTEEIDD 215 (495)
T ss_pred ----CCCcchhHHHHHHHHHHHHHHHHHcC--CCCHHHHHH
Confidence 13345555555556 59999999987 888887764
No 61
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.77 E-value=0.00069 Score=68.87 Aligned_cols=223 Identities=9% Similarity=0.048 Sum_probs=129.0
Q ss_pred CHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEEEeCcChHH-H
Q psy14065 41 DVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANLAG-E 119 (492)
Q Consensus 41 dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~vlsGPn~A~-E 119 (492)
++.+.++++|+||++||+..++++++++.+++++++++|.++++... .+.++.. .+.+. + +-.+-.|-.-. +
T Consensus 52 ~~~~~~~~~dvIi~~vp~~~~~~v~~~l~~~l~~g~ivid~st~~~~---~t~~~~~-~~~~~-g--~~~vda~vsGg~~ 124 (298)
T TIGR00872 52 ELSQRLSAPRVVWVMVPHGIVDAVLEELAPTLEKGDIVIDGGNSYYK---DSLRRYK-LLKEK-G--IHLLDCGTSGGVW 124 (298)
T ss_pred HHHhhcCCCCEEEEEcCchHHHHHHHHHHhhCCCCCEEEECCCCCcc---cHHHHHH-HHHhc-C--CeEEecCCCCCHH
Confidence 33444567899999999999999999999999888999999888654 3443333 22221 2 22222222211 1
Q ss_pred HhhcCCceEEEeecCcchHHHHHHHhcCCC----ceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHHHHH
Q psy14065 120 VAEEKFCETTIGCKDKTLGPLLHALLQTPN----FRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLG 195 (492)
Q Consensus 120 v~~~~pt~vvias~~~~~~~~v~~lf~~~~----f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~t~g 195 (492)
.++.-+ .+.+++ +++..+.++.+|+.-. -.+|.. + .|... -++.-.|+..+-+..+
T Consensus 125 ~a~~G~-~~~~gG-~~~~~~~~~~~l~~~~~~~~~~~~~G-~-~G~~~----------------~~K~~~n~l~~~~~~~ 184 (298)
T TIGR00872 125 GRERGY-CFMIGG-DGEAFARAEPLFADVAPEEQGYLYCG-P-CGSGH----------------FVKMVHNGIEYGMMAA 184 (298)
T ss_pred HHhcCC-eeeeCC-CHHHHHHHHHHHHHhcCcCCCEEEEC-C-ccHhH----------------HHHHHHHHHHHHHHHH
Confidence 122223 445555 5677788888775321 122332 2 24332 2467789999999999
Q ss_pred HHHHHHHHHHHCCCCCccccccccccchhhh-hccCCCCHHHH---HHHHhCCCChHHHHHHhcCCceeecchhHHHHHH
Q psy14065 196 LMEMVKFTELFYPGAKSATFFESCGVADLIT-TCYGGRNRKVS---EAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNY 271 (492)
Q Consensus 196 ~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~-Tc~s~RN~~~G---~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v~~ 271 (492)
+.|...|+++..-|-+++++... +- +|. .|++-+- ..+-+ +...+.+.... +.. .+.+.+..
T Consensus 185 ~aE~~~l~~~~g~~ld~~~~~~i------~~~g~~-~~s~~l~~~~~~~~~-~~~~~~~~~~~--~~~----~~~r~~v~ 250 (298)
T TIGR00872 185 IAEGFEILRNSQFDFDIPEVARV------WRRGSV-IRSWLLDLTAIAFRE-SPDLAEFSGRV--SDS----GEGRWTVI 250 (298)
T ss_pred HHHHHHHHHHcCCCcCHHHHHHH------HcCCch-hHhHHHHHHHHHHhc-CCcHHHHHHHH--Hhh----ccHHHHHH
Confidence 99999999987112377776653 11 111 1443222 23332 34444444332 122 33366667
Q ss_pred HHHhcCCCCCCchhhhh--HHhhcCCC--ChHHHHHHHh
Q psy14065 272 MLKNKNMENKFPLFTAV--HKICIGEM--KPQQFIDAIR 306 (492)
Q Consensus 272 l~~~~~l~~~~PI~~av--~~Il~~~~--~p~~~i~~L~ 306 (492)
.+.+.++. +|.+.+. |+..+... .|..+++.++
T Consensus 251 ~a~~~g~p--~P~~~~al~~~~~~~~~~~~~~~~~~~~r 287 (298)
T TIGR00872 251 AAIDLGVP--APVIATSLQSRFASRDLDDFANKVLAALR 287 (298)
T ss_pred HHHHhCCC--HHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Confidence 78888884 8888754 24444433 3677777554
No 62
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.75 E-value=0.00015 Score=78.31 Aligned_cols=181 Identities=13% Similarity=0.033 Sum_probs=116.0
Q ss_pred cccccccCcHHHHHHHHHcCCCCCCCCCCCCCCCeEEecCHHHHhc---cCCEEEEe-cChHHHHHHHHHhhccCCCCCe
Q psy14065 2 YVYEEMIDGKKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAK---DADILVFV-VPHQFIVRLCSQLLGKIKPDAV 77 (492)
Q Consensus 2 ~~~~~~~~~~~~~~~in~~~~N~~ylp~i~l~~~I~at~dl~~al~---~aDiIila-VPs~~~~~vl~~l~~~l~~~~~ 77 (492)
|-|+++ .++.+++.+.|+.+ +++.+++++++++ ++|+||++ +|++.++++++++.++++++.+
T Consensus 30 ~dr~~~-----~~~~l~~~~~~~g~--------~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L~~g~i 96 (470)
T PTZ00142 30 YNRTYE-----KTEEFVKKAKEGNT--------RVKGYHTLEELVNSLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDI 96 (470)
T ss_pred EeCCHH-----HHHHHHHhhhhcCC--------cceecCCHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHhhCCCCCE
Confidence 555544 57777765555422 3667889999886 48977777 5678999999999999999999
Q ss_pred EEEEEccceeccCCccccHHHHHHhHhCCceEEEeCcChHH-HHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEcC
Q psy14065 78 GLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANLAG-EVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVD 156 (492)
Q Consensus 78 iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~vlsGPn~A~-Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~~ 156 (492)
||.++++... .|.++..+...+ .+-.+..|-.-- +.++.-| ++.+++ +++..+.++.+|..-.-+. +
T Consensus 97 IID~gn~~~~---dt~~r~~~l~~~----Gi~fldapVSGG~~gA~~G~-~lm~GG-~~~a~~~~~piL~~ia~~~---~ 164 (470)
T PTZ00142 97 IIDGGNEWYL---NTERRIKRCEEK----GILYLGMGVSGGEEGARYGP-SLMPGG-NKEAYDHVKDILEKCSAKV---G 164 (470)
T ss_pred EEECCCCCHH---HHHHHHHHHHHc----CCeEEcCCCCCCHHHHhcCC-EEEEeC-CHHHHHHHHHHHHHHhhhc---C
Confidence 9999999875 455555433332 223333333332 2333345 566666 5567788888886432220 1
Q ss_pred CcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHHHHHHH-HHCCCCCcccccc
Q psy14065 157 DVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTE-LFYPGAKSATFFE 217 (492)
Q Consensus 157 D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aal~t~g~~Em~~l~~-~~~~G~~~~t~~g 217 (492)
|-.++-.+|- .|...-+++-+|....-+..++.|...|++ .. |-+++++..
T Consensus 165 ~~~~~~~~G~--------~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~--gl~~~~l~~ 216 (470)
T PTZ00142 165 DSPCVTYVGP--------GSSGHYVKMVHNGIEYGDMQLISESYKLMKHIL--GMSNEELSE 216 (470)
T ss_pred CCCeEEEECC--------CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc--CCCHHHHHH
Confidence 2122222221 022223467789999999999999999997 56 777776653
No 63
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=97.68 E-value=0.00091 Score=67.44 Aligned_cols=215 Identities=14% Similarity=0.079 Sum_probs=146.2
Q ss_pred CeEEecCHHHHhccCCEEEEecCh-HHHHHHH---HHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEE
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPH-QFIVRLC---SQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTV 110 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs-~~~~~vl---~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~v 110 (492)
......+..++++++|+||.+||. +.+++++ +.+.+.++++.++|.++. ++| .+-+.+.+.+++. ....
T Consensus 44 Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmST-isp---~~a~~~a~~~~~~---G~~~ 116 (286)
T COG2084 44 GATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMST-ISP---ETARELAAALAAK---GLEF 116 (286)
T ss_pred CCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCC-CCH---HHHHHHHHHHHhc---CCcE
Confidence 556677788999999999999965 6899999 457777778888886663 343 3444555555443 2344
Q ss_pred EeCcChHHHHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHH
Q psy14065 111 LMGANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAA 190 (492)
Q Consensus 111 lsGPn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aa 190 (492)
+=.|-.--......-|-++.++-+++..+.++.+|+.-.=+++..-+. |.=- ..++-.|...+
T Consensus 117 lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~~~G~~-G~G~----------------~~Kl~nn~l~~ 179 (286)
T COG2084 117 LDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVHVGPV-GAGQ----------------AAKLANNILLA 179 (286)
T ss_pred EecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceEEECCC-CchH----------------HHHHHHHHHHH
Confidence 444544444444445677788888899999999998666556665555 3322 24788999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCccccccccccchhhhhccCCCCHH---HHHHHHhCCCChHHHHHHhcCCceeecchhHH
Q psy14065 191 VIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRK---VSEAFVKTGKSIKDLEDEMLNGQKLQGPFTAD 267 (492)
Q Consensus 191 l~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s~RN~~---~G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~ 267 (492)
....++.|-..|+++. |-+++.++..- +-++.++.. +++++.+...+.....+. ..+++.
T Consensus 180 ~~~~a~aEAl~la~k~--Gld~~~~~~vi-------~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~--------~~KDl~ 242 (286)
T COG2084 180 GNIAALAEALALAEKA--GLDPDVVLEVI-------SGGAAGSWILENYGPRMLEGDFSPGFAVDL--------MLKDLG 242 (286)
T ss_pred HHHHHHHHHHHHHHHc--CCCHHHHHHHH-------hccccCChHHHhhcchhhcCCCCcchhHHH--------HHHHHH
Confidence 9999999999999999 99999988621 111112222 223444422332222222 268889
Q ss_pred HHHHHHHhcCCCCCCchhhhhHHhh
Q psy14065 268 EVNYMLKNKNMENKFPLFTAVHKIC 292 (492)
Q Consensus 268 ~v~~l~~~~~l~~~~PI~~av~~Il 292 (492)
.+.+.+++.++. +|+...+.++.
T Consensus 243 la~~~A~~~g~~--lP~~~~~~~ly 265 (286)
T COG2084 243 LALDAAKELGAP--LPLTALAAELY 265 (286)
T ss_pred HHHHHHHhcCCC--CcHHHHHHHHH
Confidence 999999999984 89998877663
No 64
>PLN02858 fructose-bisphosphate aldolase
Probab=97.66 E-value=0.0014 Score=79.20 Aligned_cols=230 Identities=13% Similarity=0.096 Sum_probs=136.4
Q ss_pred eEEecCHHHHhccCCEEEEecC-hHHHHHHH---HHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEEE
Q psy14065 36 VVAVPDVVEAAKDADILVFVVP-HQFIVRLC---SQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVL 111 (492)
Q Consensus 36 I~at~dl~~al~~aDiIilaVP-s~~~~~vl---~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~vl 111 (492)
....+++.++++++|+||++|| ++.+++++ ..+.+.+.+++++|.++.. .| ++.+.+.+.+.+. +..+.++
T Consensus 368 a~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STv-sP---~~~~~la~~l~~~-g~g~~~l 442 (1378)
T PLN02858 368 GLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTV-SP---GFVIQLERRLENE-GRDIKLV 442 (1378)
T ss_pred CeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCCC-CH---HHHHHHHHHHHhh-CCCcEEE
Confidence 3446788899999999999999 78889887 3355666677877766543 33 3444455555442 1223333
Q ss_pred eCcChHHHHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEE-cCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHH
Q psy14065 112 MGANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSV-VDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAA 190 (492)
Q Consensus 112 sGPn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~-~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aa 190 (492)
-.|-.-.-......+...+++-+++..+.++.+|+.-.-+++. ..|+=-.+ .+++-.|...+
T Consensus 443 DAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~i~~~~g~~G~a~-----------------~~KL~nN~l~~ 505 (1378)
T PLN02858 443 DAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLYVIKGGCGAGS-----------------GVKMVNQLLAG 505 (1378)
T ss_pred EccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCcEEEeCCCCCHHH-----------------HHHHHHHHHHH
Confidence 3332222121222232333333566778888888653334443 34432222 34788899999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCccccccccccchhhhhccCCCCHHH---HHHHHhCCCChHHHHHHhcCCceeecchhHH
Q psy14065 191 VIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKV---SEAFVKTGKSIKDLEDEMLNGQKLQGPFTAD 267 (492)
Q Consensus 191 l~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s~RN~~~---G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~ 267 (492)
....+++|+..|+++. |-++++++.. +. .++++++-+ ++.+.....+.....+- ..++++
T Consensus 506 ~~~aa~aEal~la~k~--Gld~~~l~ev--l~-----~s~g~s~~~~~~~~~~l~~d~~~~f~l~l--------~~KDl~ 568 (1378)
T PLN02858 506 VHIASAAEAMAFGARL--GLNTRKLFDI--IS-----NAGGTSWMFENRVPHMLDNDYTPYSALDI--------FVKDLG 568 (1378)
T ss_pred HHHHHHHHHHHHHHHc--CCCHHHHHHH--HH-----hhcccChhhhhccchhhcCCCCCCchhHH--------HHHHHH
Confidence 9999999999999999 9999998862 10 001122211 22333312221111111 157888
Q ss_pred HHHHHHHhcCCCCCCchhhhhHHhhc-------CCCChHHHHHHHh
Q psy14065 268 EVNYMLKNKNMENKFPLFTAVHKICI-------GEMKPQQFIDAIR 306 (492)
Q Consensus 268 ~v~~l~~~~~l~~~~PI~~av~~Il~-------~~~~p~~~i~~L~ 306 (492)
.+.+.+++.++ .+|+...+.++.. ++.+...+++.+.
T Consensus 569 l~~~~a~~~g~--~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~ 612 (1378)
T PLN02858 569 IVSREGSSRKI--PLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYE 612 (1378)
T ss_pred HHHHHHHHcCC--CChHHHHHHHHHHHHHhcCCCccChHHHHHHHH
Confidence 89999999998 4999988877652 2444555555443
No 65
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.66 E-value=0.00074 Score=72.40 Aligned_cols=167 Identities=13% Similarity=0.144 Sum_probs=100.7
Q ss_pred CeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEE----
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTV---- 110 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~v---- 110 (492)
++.+++++.++++++|+||+|+|++.+.++++++.++++++++++.++. +...+.+.+.+.++...-+
T Consensus 45 gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~~l~~~l~~~~iViDvsS--------vK~~~~~~l~~~~~~~~~~V~~H 116 (437)
T PRK08655 45 GVEYANDNIDAAKDADIVIISVPINVTEDVIKEVAPHVKEGSLLMDVTS--------VKERPVEAMEEYAPEGVEILPTH 116 (437)
T ss_pred CCeeccCHHHHhccCCEEEEecCHHHHHHHHHHHHhhCCCCCEEEEccc--------ccHHHHHHHHHhcCCCCEEEEcC
Confidence 3456778888999999999999999999999999999988888887652 1122236666666532212
Q ss_pred -EeCcChHHHHhhcCCceEEEee--cCcchHHHHHHHhcCCCceEEEcCCcch---hhhhhhhHHHHHHHHHHhh-hcCC
Q psy14065 111 -LMGANLAGEVAEEKFCETTIGC--KDKTLGPLLHALLQTPNFRVSVVDDVDA---VEICGALKNIVACGAGFVD-GLGL 183 (492)
Q Consensus 111 -lsGPn~A~Ev~~~~pt~vvias--~~~~~~~~v~~lf~~~~f~v~~~~D~~G---vEl~galKNv~AIa~Gi~~-gl~~ 183 (492)
+.||+.+ ...+... +...+ .+++..+.++++|+...++++..+.-.- +-+...+-.+++++-+..- .++.
T Consensus 117 PmaGp~~~--~~~g~~~-il~p~~~~~~~~~~~v~~ll~~~G~~v~~~~~e~HD~~~a~vs~lph~~a~al~~~l~~~g~ 193 (437)
T PRK08655 117 PMFGPRTP--SLKGQVV-ILTPTEKRSNPWFDKVKNFLEKEGARVIVTSPEEHDRIMSVVQGLTHFAYISIASTLKRLGV 193 (437)
T ss_pred CCCCCCCc--ccCCCEE-EEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2346654 2344422 22222 4567789999999999999886543322 1223334445544433321 1122
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHCCCCCcc
Q psy14065 184 GDNTKAAVIRLGLMEMVKFTELFYPGAKSA 213 (492)
Q Consensus 184 g~N~~aal~t~g~~Em~~l~~~~~~G~~~~ 213 (492)
.....-.+.+-+++.|..+...+. +.+|+
T Consensus 194 ~~~~~~~~a~~~frd~~~~~tRIa-~~~p~ 222 (437)
T PRK08655 194 DIKESRKFASPIYELMIDIIGRIL-GQNPY 222 (437)
T ss_pred CHHHHHhhcChhhHHHHHHHHHHh-cCCHH
Confidence 222333566667777755433331 44554
No 66
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.59 E-value=2.9e-05 Score=71.43 Aligned_cols=74 Identities=20% Similarity=0.135 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCCCCCchhhhhHHhh-cCCCChHHHHHHHhcCCCCCCcccccchhhcCCCcHHHHhhccceEEEEeeC
Q psy14065 266 ADEVNYMLKNKNMENKFPLFTAVHKIC-IGEMKPQQFIDAIREHPDHKVSTAQKEAVLISSLTSSHVAEEKFCETTIGCK 344 (492)
Q Consensus 266 ~~~v~~l~~~~~l~~~~PI~~av~~Il-~~~~~p~~~i~~L~~~~~~~~~~~~~~~~l~gp~~a~ev~~~~~~~~~ia~~ 344 (492)
.+.+.+.++.+- .++.+++...+.+- .....+.++++.....+ +.++|+||+||.||++++||++++||+
T Consensus 82 ~~~~~~~l~~~l-~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~--------~~~~lsGP~~A~Ei~~~~pt~~~~as~ 152 (157)
T PF01210_consen 82 HREVLEQLAPYL-KKGQIIISATKGFEPGTLLLLSEVIEEILPIP--------RIAVLSGPSFAEEIAEGKPTAVVIASK 152 (157)
T ss_dssp HHHHHHHHTTTS-HTT-EEEETS-SEETTEEEEHHHHHHHHHSSC--------GEEEEESS--HHHHHTT--EEEEEEES
T ss_pred HHHHHHHHhhcc-CCCCEEEEecCCcccCCCccHHHHHHHHhhhc--------ceEEeeCccHHHHHHcCCCeEEEEEec
Confidence 344544444442 33578998888883 34677899998876544 278999999999999999999999999
Q ss_pred CCCh
Q psy14065 345 DKTL 348 (492)
Q Consensus 345 ~~~~ 348 (492)
|.+.
T Consensus 153 ~~~~ 156 (157)
T PF01210_consen 153 NEEV 156 (157)
T ss_dssp SHHH
T ss_pred cccc
Confidence 9764
No 67
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.50 E-value=8.2e-05 Score=62.12 Aligned_cols=48 Identities=27% Similarity=0.388 Sum_probs=40.3
Q ss_pred eEEec-CHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEcc
Q psy14065 36 VVAVP-DVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKG 84 (492)
Q Consensus 36 I~at~-dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KG 84 (492)
+.++. +..++++++|+||+||||+.+.++++++ ++..+++.+||++.|
T Consensus 48 ~~~~~~~~~~~~~~advvilav~p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 48 VQATADDNEEAAQEADVVILAVKPQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp TEEESEEHHHHHHHTSEEEE-S-GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred cccccCChHHhhccCCEEEEEECHHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 45555 8899999999999999999999999999 667789999999865
No 68
>PLN02256 arogenate dehydrogenase
Probab=97.49 E-value=0.00088 Score=68.44 Aligned_cols=160 Identities=11% Similarity=0.115 Sum_probs=103.2
Q ss_pred eEEecCHHHHh-ccCCEEEEecChHHHHHHHHHh-hccCCCCCeEEEEE--ccceeccCCccccHHHHHHhHhCCc-eEE
Q psy14065 36 VVAVPDVVEAA-KDADILVFVVPHQFIVRLCSQL-LGKIKPDAVGLSLI--KGFDRAEGGGIDLISHIITRNLKIK-MTV 110 (492)
Q Consensus 36 I~at~dl~~al-~~aDiIilaVPs~~~~~vl~~l-~~~l~~~~~iIs~~--KGl~~~~~~t~~~~se~i~e~l~~~-~~v 110 (492)
+...+|+++++ .++|+||+|||++.+.++++++ .+++++++++++++ ||... +.+++.++.. ..+
T Consensus 79 v~~~~~~~e~~~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~----------~~~~~~l~~~~~~V 148 (304)
T PLN02256 79 VSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPK----------NLLLQVLPEEFDIL 148 (304)
T ss_pred CeeeCCHHHHhhCCCCEEEEecCHHHHHHHHHhhhhhccCCCCEEEecCCchHHHH----------HHHHHhCCCCCeEE
Confidence 44567787776 4799999999999999999999 67788888888764 35443 6677777532 488
Q ss_pred EeCcChHHHHhhcCCce--EEEe-------ecCcchHHHHHHHhcCCCceEEEcC----CcchhhhhhhhHHHHHHHHHH
Q psy14065 111 LMGANLAGEVAEEKFCE--TTIG-------CKDKTLGPLLHALLQTPNFRVSVVD----DVDAVEICGALKNIVACGAGF 177 (492)
Q Consensus 111 lsGPn~A~Ev~~~~pt~--vvia-------s~~~~~~~~v~~lf~~~~f~v~~~~----D~~GvEl~galKNv~AIa~Gi 177 (492)
.+.|++..|...+.... +.+. ..+++..+.++++++.-..+++..+ |-+ +-...-|--++|.+.--
T Consensus 149 ~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~~eeHD~~-vA~iShLpH~la~~L~~ 227 (304)
T PLN02256 149 CTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMSCEEHDRY-AAGSQFITHTVGRILGK 227 (304)
T ss_pred ecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeCHHHHhHH-HHhhhhHHHHHHHHHHH
Confidence 89999999875332111 1111 2245667888899987777776553 444 33444555554444322
Q ss_pred hhhcCCCcChHHHHHHHHHHHHHHHHHHHCCCCCcc
Q psy14065 178 VDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSA 213 (492)
Q Consensus 178 ~~gl~~g~N~~aal~t~g~~Em~~l~~~~~~G~~~~ 213 (492)
.. .. ...+.+-|++-|.|++..++ ..+|+
T Consensus 228 ~~---~~---~~~~~~~gfrd~tria~r~~-~~~p~ 256 (304)
T PLN02256 228 ME---LE---STPINTKGYETLLRLVENTS-SDSFD 256 (304)
T ss_pred cC---Cc---ccccccccHHHHHHHHHhhc-CCCHH
Confidence 21 11 13566667888888876553 34553
No 69
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.47 E-value=0.0007 Score=68.84 Aligned_cols=223 Identities=10% Similarity=-0.009 Sum_probs=132.1
Q ss_pred eEEecCHHHHhcc---CCEEEEecChH-HHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEEE
Q psy14065 36 VVAVPDVVEAAKD---ADILVFVVPHQ-FIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVL 111 (492)
Q Consensus 36 I~at~dl~~al~~---aDiIilaVPs~-~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~vl 111 (492)
...+.++++++++ +|+||+++|++ .++++++.+.+.+++++++|.++.+-. .+.+.+.+.+.+ ..+..+
T Consensus 44 ~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~----~~~~~~~~~~~~---~g~~~v 116 (299)
T PRK12490 44 ITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRY----KDDLRRAEELAE---RGIHYV 116 (299)
T ss_pred CeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHHhccCCCCCEEEECCCCCc----hhHHHHHHHHHH---cCCeEE
Confidence 4567788888776 69999999998 999999999998888888887764322 233333333332 223334
Q ss_pred eCcChHHHHhhcCCceEEEeecCcchHHHHHHHhcCCCc---eEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChH
Q psy14065 112 MGANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNF---RVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTK 188 (492)
Q Consensus 112 sGPn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f---~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~ 188 (492)
-.|-.-........+.+.+++ +++..+.++.+|..-.- +++..-++ |. ...+++-.|..
T Consensus 117 dapV~G~~~~a~~g~~~~~gG-~~~~~~~~~~~l~~~~~~~~~~~~~G~~-g~----------------a~~~Kl~~n~~ 178 (299)
T PRK12490 117 DCGTSGGVWGLRNGYCLMVGG-DKEIYDRLEPVFKALAPEGPGYVHAGPV-GS----------------GHFLKMVHNGI 178 (299)
T ss_pred eCCCCCCHHHHhcCCeEEecC-CHHHHHHHHHHHHHhcCcCCcEEEECCc-CH----------------HHHHHHHHHHH
Confidence 444333322222223344444 55666777777754332 34443442 32 22357888999
Q ss_pred HHHHHHHHHHHHHHHHHHCCC--CCccccccc-c--ccchhhhhccCCCCH---HHHHHHHhCCCChHHHHHHhcCCcee
Q psy14065 189 AAVIRLGLMEMVKFTELFYPG--AKSATFFES-C--GVADLITTCYGGRNR---KVSEAFVKTGKSIKDLEDEMLNGQKL 260 (492)
Q Consensus 189 aal~t~g~~Em~~l~~~~~~G--~~~~t~~gl-a--GlGDl~~Tc~s~RN~---~~G~~l~~~G~~~~~~~~~~~~g~~~ 260 (492)
.+....++.|...|+++. | -|+++++.. . +.+ |++ ..+..+.+ +.....+ +.+
T Consensus 179 ~~~~~~~~aEa~~l~~~~--g~~ld~~~~~~~~~~~~~~---------~s~~l~~~~~~~~~-~~~~~~l-~~~------ 239 (299)
T PRK12490 179 EYGMMQAYAEGLELLDKS--DFDFDVEDVARLWRNGSVI---------RSWLLDLTVKALAE-DPKLAGI-KGY------ 239 (299)
T ss_pred HHHHHHHHHHHHHHHHHc--ccCCCHHHHHHHHcCCcHH---------HHHHHHHHHHHHhh-CCChhhh-hHH------
Confidence 999999999999999998 7 678777652 1 221 222 12333432 2221111 111
Q ss_pred ecchhH---HHHHHHHHhcCCCCCCchhhhhH-HhhcC--CCCh-HHHHHHHh
Q psy14065 261 QGPFTA---DEVNYMLKNKNMENKFPLFTAVH-KICIG--EMKP-QQFIDAIR 306 (492)
Q Consensus 261 EG~~t~---~~v~~l~~~~~l~~~~PI~~av~-~Il~~--~~~p-~~~i~~L~ 306 (492)
.++. +.+.+.+++.++. +|+...+. .+... ...| .+.++.+.
T Consensus 240 --~KD~~~~~l~~~~A~~~g~~--~P~~~~a~~~~~~~~~~~~~~~~~~~a~~ 288 (299)
T PRK12490 240 --VNDSGEGRWTVEEAIELAVA--APVIAASLFMRFASQEDDSFHMKVVSALR 288 (299)
T ss_pred --HHhcCcHHHHHHHHHHcCCC--HHHHHHHHHHHHHhCccCChHHHHHHHHH
Confidence 1233 5577889999994 99999883 44433 3334 55555444
No 70
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.45 E-value=0.00041 Score=70.04 Aligned_cols=140 Identities=14% Similarity=0.071 Sum_probs=91.2
Q ss_pred CCeEEecCHHHHhccCCEEEEecChH--HHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhC--CceE
Q psy14065 34 PNVVAVPDVVEAAKDADILVFVVPHQ--FIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLK--IKMT 109 (492)
Q Consensus 34 ~~I~at~dl~~al~~aDiIilaVPs~--~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~--~~~~ 109 (492)
.+|++++|++++++++|+||.|+|++ ..+++++++.++++++++|++.+-++. +++.. +.+. .+++
T Consensus 70 ~~i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~---------~~~~~-~~~~~~~r~v 139 (287)
T PRK08293 70 NRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLL---------PSQFA-EATGRPEKFL 139 (287)
T ss_pred cCeEEeCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCC---------HHHHH-hhcCCcccEE
Confidence 58899999999999999999999976 788999999999887776655443333 33433 3343 2222
Q ss_pred E--EeCcChHHHHhhcCCceEEEe--ecCcchHHHHHHHhcCCCceEEEc-CCcchhhhhhhhHHHHHHHHHHhhhcCCC
Q psy14065 110 V--LMGANLAGEVAEEKFCETTIG--CKDKTLGPLLHALLQTPNFRVSVV-DDVDAVEICGALKNIVACGAGFVDGLGLG 184 (492)
Q Consensus 110 v--lsGPn~A~Ev~~~~pt~vvia--s~~~~~~~~v~~lf~~~~f~v~~~-~D~~GvEl~galKNv~AIa~Gi~~gl~~g 184 (492)
. ...|.+ .+|...++- ..+++..+.+.+++..-..++... .|..|-=+
T Consensus 140 g~Hf~~p~~------~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~--------------------- 192 (287)
T PRK08293 140 ALHFANEIW------KNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYIL--------------------- 192 (287)
T ss_pred EEcCCCCCC------cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhH---------------------
Confidence 2 133322 223334342 456778888888888777766544 46665322
Q ss_pred cChHHHHHHHHHHHHHHHHHHHCCCCCccccc
Q psy14065 185 DNTKAAVIRLGLMEMVKFTELFYPGAKSATFF 216 (492)
Q Consensus 185 ~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~ 216 (492)
.-++...++|..++...- -++++++-
T Consensus 193 ----nRi~~~~~~ea~~l~~~g--~a~~~~iD 218 (287)
T PRK08293 193 ----NSLLVPFLSAALALWAKG--VADPETID 218 (287)
T ss_pred ----HHHHHHHHHHHHHHHHcC--CCCHHHHH
Confidence 245666778888886542 36676654
No 71
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.43 E-value=0.00066 Score=68.66 Aligned_cols=145 Identities=18% Similarity=0.070 Sum_probs=95.3
Q ss_pred CCCeEEecCHHHHhccCCEEEEecChHH--HHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCC-ceE
Q psy14065 33 PPNVVAVPDVVEAAKDADILVFVVPHQF--IVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKI-KMT 109 (492)
Q Consensus 33 ~~~I~at~dl~~al~~aDiIilaVPs~~--~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~-~~~ 109 (492)
+.++.+++|+ ++++++|+||.|+|++. .+.+++++.++++++++++|.++|+.+ ..+.+.+.. .-+
T Consensus 71 ~~~i~~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~----------~~la~~~~~~~r~ 139 (291)
T PRK06035 71 MARIRTSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMI----------AEIATALERKDRF 139 (291)
T ss_pred HhCcEeeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCH----------HHHHhhcCCcccE
Confidence 4568888998 57899999999999985 788999999999888999999999876 455555532 113
Q ss_pred EEeCcChHHHHhhcCCceEEEe-ecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChH
Q psy14065 110 VLMGANLAGEVAEEKFCETTIG-CKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTK 188 (492)
Q Consensus 110 vlsGPn~A~Ev~~~~pt~vvia-s~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~ 188 (492)
+-..|....-+.... .++-+ ..+++..+.+..++..-...+....|.-|--.
T Consensus 140 ig~hf~~P~~~~~~v--Ev~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~------------------------- 192 (291)
T PRK06035 140 IGMHWFNPAPVMKLI--EVVRAALTSEETFNTTVELSKKIGKIPIEVADVPGFFT------------------------- 192 (291)
T ss_pred EEEecCCCcccCccE--EEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCeeH-------------------------
Confidence 333344322222111 11111 23577888888888877777777666555422
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCcccccc
Q psy14065 189 AAVIRLGLMEMVKFTELFYPGAKSATFFE 217 (492)
Q Consensus 189 aal~t~g~~Em~~l~~~~~~G~~~~t~~g 217 (492)
.-++...++|..++...= -++++++--
T Consensus 193 nRl~~~~~~ea~~~~~~g--~a~~~~iD~ 219 (291)
T PRK06035 193 TRFIEGWLLEAIRSFEIG--IATIKDIDE 219 (291)
T ss_pred HHHHHHHHHHHHHHHHcC--CCCHHHHHH
Confidence 256666778888776431 255655543
No 72
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.41 E-value=0.0009 Score=67.31 Aligned_cols=143 Identities=13% Similarity=0.040 Sum_probs=104.8
Q ss_pred CCeEEecCHHHHhccCCEEEEecChHHH--HHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCC-ceEE
Q psy14065 34 PNVVAVPDVVEAAKDADILVFVVPHQFI--VRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKI-KMTV 110 (492)
Q Consensus 34 ~~I~at~dl~~al~~aDiIilaVPs~~~--~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~-~~~v 110 (492)
.++++++|+++ +++||+||+|+|.+.. +++++++.++++++++++|.+-|+.+ ..+.+.++. .-++
T Consensus 69 ~~l~~~~~~~~-~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~----------~~la~~~~~~~r~i 137 (282)
T PRK05808 69 ARITGTTDLDD-LKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSI----------TELAAATKRPDKVI 137 (282)
T ss_pred hCeEEeCCHHH-hccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH----------HHHHHhhCCCcceE
Confidence 47888999865 7999999999987654 79999999999988888888888876 466666652 3478
Q ss_pred EeCcChHHHHhhcCCceEEEe-ecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHH
Q psy14065 111 LMGANLAGEVAEEKFCETTIG-CKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKA 189 (492)
Q Consensus 111 lsGPn~A~Ev~~~~pt~vvia-s~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~a 189 (492)
...|+....+.... . ++-+ ..+++..+.+.++|..-...+....|.-|-= ..
T Consensus 138 g~h~~~P~~~~~~v-e-v~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g~i-------------------------~~ 190 (282)
T PRK05808 138 GMHFFNPVPVMKLV-E-IIRGLATSDATHEAVEALAKKIGKTPVEVKNAPGFV-------------------------VN 190 (282)
T ss_pred EeeccCCcccCccE-E-EeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccChH-------------------------HH
Confidence 88899987776555 2 2222 5567888999999987776666666666531 22
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCccccc
Q psy14065 190 AVIRLGLMEMVKFTELFYPGAKSATFF 216 (492)
Q Consensus 190 al~t~g~~Em~~l~~~~~~G~~~~t~~ 216 (492)
-++...++|..++.+.- -++|+.+-
T Consensus 191 Ri~~~~~~ea~~~~~~g--v~~~~diD 215 (282)
T PRK05808 191 RILIPMINEAIFVLAEG--VATAEDID 215 (282)
T ss_pred HHHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 67778888988887652 35666543
No 73
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.40 E-value=0.0034 Score=63.81 Aligned_cols=228 Identities=10% Similarity=0.045 Sum_probs=133.7
Q ss_pred CeEEecCHHHHhcc---CCEEEEecChH-HHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEE
Q psy14065 35 NVVAVPDVVEAAKD---ADILVFVVPHQ-FIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTV 110 (492)
Q Consensus 35 ~I~at~dl~~al~~---aDiIilaVPs~-~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~v 110 (492)
+++.+++++++++. +|+||+++|+. .++++++.+.+.+++++++|.++.+-.. +.+.+.+.+++. .+..
T Consensus 43 g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l~~~l~~g~ivid~st~~~~----~~~~~~~~~~~~---g~~~ 115 (301)
T PRK09599 43 GATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYK----DDIRRAELLAEK---GIHF 115 (301)
T ss_pred CCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHHHhhCCCCCEEEeCCCCChh----HHHHHHHHHHHc---CCEE
Confidence 35567788887775 69999999997 8999999999999888888888766442 223333333332 2223
Q ss_pred EeCcChHHHH-h-hcCCceEEEeecCcchHHHHHHHhcCCCc----eEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCC
Q psy14065 111 LMGANLAGEV-A-EEKFCETTIGCKDKTLGPLLHALLQTPNF----RVSVVDDVDAVEICGALKNIVACGAGFVDGLGLG 184 (492)
Q Consensus 111 lsGPn~A~Ev-~-~~~pt~vvias~~~~~~~~v~~lf~~~~f----~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g 184 (492)
+-.|..-... + .+ +.+.+++ +++..+.++.+|..-.= +++..-+ .|.- .-+++-
T Consensus 116 ~dapvsG~~~~a~~g--~~~~~gG-~~~~~~~~~~~l~~~~~~~~~~~~~~G~-~G~g----------------~~~Kl~ 175 (301)
T PRK09599 116 VDVGTSGGVWGLERG--YCLMIGG-DKEAVERLEPIFKALAPRAEDGYLHAGP-VGAG----------------HFVKMV 175 (301)
T ss_pred EeCCCCcCHHHHhcC--CeEEecC-CHHHHHHHHHHHHHHcccccCCeEeECC-CcHH----------------HHHHHH
Confidence 3344333222 2 23 3344444 56667888877753322 2333333 3431 224777
Q ss_pred cChHHHHHHHHHHHHHHHHHH--HCCCCCccccccccccchhhhhccCCCCH---HHHHHHHhCCCChHHHHHHhcCCce
Q psy14065 185 DNTKAAVIRLGLMEMVKFTEL--FYPGAKSATFFESCGVADLITTCYGGRNR---KVSEAFVKTGKSIKDLEDEMLNGQK 259 (492)
Q Consensus 185 ~N~~aal~t~g~~Em~~l~~~--~~~G~~~~t~~glaGlGDl~~Tc~s~RN~---~~G~~l~~~G~~~~~~~~~~~~g~~ 259 (492)
.|+..+....++.|...|+++ . |-++++++..--- +|. .|++ .....+.+ ...++.+....
T Consensus 176 ~n~l~~~~~~~~aEa~~l~~~~~~--gld~~~~~~~~~~-----~~~-~~s~~l~~~~~~~~~-~~~~~~~~~~~----- 241 (301)
T PRK09599 176 HNGIEYGMMQAYAEGFELLEASRF--DLDLAAVAEVWRR-----GSV-IRSWLLDLTADALAE-DPKLDEISGYV----- 241 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC--CCCHHHHHHHHhC-----CcH-HHHHHHHHHHHHHhc-CCCHHHHHHHH-----
Confidence 899999999999999999999 6 7888887752100 110 0222 22444432 22232221111
Q ss_pred eecchhHHHHHHHHHhcCCCCCCchhhh-hHH-h--hcCCCChHHHHHHHh
Q psy14065 260 LQGPFTADEVNYMLKNKNMENKFPLFTA-VHK-I--CIGEMKPQQFIDAIR 306 (492)
Q Consensus 260 ~EG~~t~~~v~~l~~~~~l~~~~PI~~a-v~~-I--l~~~~~p~~~i~~L~ 306 (492)
-+ .++.+.+.+.+.+.++. +|.+.+ ++. . ..+...+...++.+.
T Consensus 242 kd-~~~~~~~~~~A~~~~~~--~P~~~~a~~~~~~~~~~~~~~~~~~~a~~ 289 (301)
T PRK09599 242 ED-SGEGRWTVEEAIDLAVP--APVIAAALFMRFRSRQEDSFADKVVAALR 289 (301)
T ss_pred Hh-hCcHHHHHHHHHHcCCC--HHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 01 34457788889999984 899998 443 2 223344566665544
No 74
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.32 E-value=0.0015 Score=65.43 Aligned_cols=109 Identities=15% Similarity=0.180 Sum_probs=67.9
Q ss_pred ecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEEEeCcCh--
Q psy14065 39 VPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANL-- 116 (492)
Q Consensus 39 t~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~vlsGPn~-- 116 (492)
..+++++. ++|+||+|||++.+.++++++.+ ++++++|+.+ |.. ...+.+.+.+..+.+ .+...|+.
T Consensus 50 ~~~~~~~~-~aD~Vilavp~~~~~~~~~~l~~-l~~~~iv~d~--gs~------k~~i~~~~~~~~~~~-~v~~hPmaG~ 118 (275)
T PRK08507 50 IVSFEELK-KCDVIFLAIPVDAIIEILPKLLD-IKENTTIIDL--GST------KAKIIESVPKHIRKN-FIAAHPMAGT 118 (275)
T ss_pred cCCHHHHh-cCCEEEEeCcHHHHHHHHHHHhc-cCCCCEEEEC--ccc------hHHHHHHHHHhcCCC-EEecCCcCcC
Confidence 34666754 59999999999999999999999 8878876653 322 223344444432222 33444653
Q ss_pred -------HH-HHhhcCCceEEEe-ecCcchHHHHHHHhcCCCceEEEcCCc
Q psy14065 117 -------AG-EVAEEKFCETTIG-CKDKTLGPLLHALLQTPNFRVSVVDDV 158 (492)
Q Consensus 117 -------A~-Ev~~~~pt~vvia-s~~~~~~~~v~~lf~~~~f~v~~~~D~ 158 (492)
|. ++.++.++.++-. ..+++..+.++.+|+.-..+++..+..
T Consensus 119 e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~~ 169 (275)
T PRK08507 119 ENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDAK 169 (275)
T ss_pred chhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCHH
Confidence 22 2445554333222 234566788999998888777776543
No 75
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.09 E-value=0.0044 Score=63.21 Aligned_cols=146 Identities=12% Similarity=0.043 Sum_probs=98.8
Q ss_pred CCCCeEEecCHHHHhccCCEEEEecChH--HHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhC-Cce
Q psy14065 32 LPPNVVAVPDVVEAAKDADILVFVVPHQ--FIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLK-IKM 108 (492)
Q Consensus 32 l~~~I~at~dl~~al~~aDiIilaVPs~--~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~-~~~ 108 (492)
++.++++++|++++++++|+|+.|+|.+ ..+.+++++.++.+++.++.|-++++.. ..+.+.+. ...
T Consensus 66 ~~~~i~~~~~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~----------~~la~~~~~~~~ 135 (308)
T PRK06129 66 VLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLA----------SAFTEHLAGRER 135 (308)
T ss_pred HhcCeEEECcHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCH----------HHHHHhcCCccc
Confidence 4567899999999999999999999986 5777888888887777777777776654 45555554 223
Q ss_pred EEEeCcChHHHHhhcCCceEEEe--ecCcchHHHHHHHhcCCCceEEEc-CCcchhhhhhhhHHHHHHHHHHhhhcCCCc
Q psy14065 109 TVLMGANLAGEVAEEKFCETTIG--CKDKTLGPLLHALLQTPNFRVSVV-DDVDAVEICGALKNIVACGAGFVDGLGLGD 185 (492)
Q Consensus 109 ~vlsGPn~A~Ev~~~~pt~vvia--s~~~~~~~~v~~lf~~~~f~v~~~-~D~~GvEl~galKNv~AIa~Gi~~gl~~g~ 185 (492)
.+..-|-...-+ +|...++. ..+++..+.++.++..-..+++.. .|..|. ++ .
T Consensus 136 ~~~~hp~~p~~~---~~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~-i~--------------------n 191 (308)
T PRK06129 136 CLVAHPINPPYL---IPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGF-VL--------------------N 191 (308)
T ss_pred EEEEecCCCccc---CceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH-HH--------------------H
Confidence 444444432111 12222332 366788888999998777776654 566663 21 1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHCCCCCcccccc
Q psy14065 186 NTKAAVIRLGLMEMVKFTELFYPGAKSATFFE 217 (492)
Q Consensus 186 N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~g 217 (492)
| +....++|...|++.- |.+++.+..
T Consensus 192 r----l~~a~~~EA~~l~~~g--~~~~~~id~ 217 (308)
T PRK06129 192 R----LQGALLREAFRLVADG--VASVDDIDA 217 (308)
T ss_pred H----HHHHHHHHHHHHHHcC--CCCHHHHHH
Confidence 1 3446899999999987 889887754
No 76
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.09 E-value=0.0015 Score=68.22 Aligned_cols=110 Identities=21% Similarity=0.187 Sum_probs=73.7
Q ss_pred EecCHHHHhccCCEEEEecChHHHHHHHHHhhc-cCCCCCeEEEEEccceeccCCccccHHHHHHhHhCC--ceEE----
Q psy14065 38 AVPDVVEAAKDADILVFVVPHQFIVRLCSQLLG-KIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKI--KMTV---- 110 (492)
Q Consensus 38 at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~-~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~--~~~v---- 110 (492)
.++|++++++++|+||+|||++.+..+++++++ .++++. +|+.+-++.. .+.+.+++.++. +++-
T Consensus 50 ~~~~~~~~~~~aDlVilavP~~~~~~vl~~l~~~~l~~~~-ivtDv~SvK~-------~i~~~~~~~~~~~~~~ig~HPM 121 (359)
T PRK06545 50 LAADLQRAAAEADLIVLAVPVDATAALLAELADLELKPGV-IVTDVGSVKG-------AILAEAEALLGDLIRFVGGHPM 121 (359)
T ss_pred cccCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhcCCCCCc-EEEeCccccH-------HHHHHHHHhcCCCCeEEeeCCc
Confidence 457888899999999999999999999999998 476564 4544444432 112344444331 2211
Q ss_pred ----EeCcChHH-HHhhcCCceEEEee-cCcchHHHHHHHhcCCCceEEEc
Q psy14065 111 ----LMGANLAG-EVAEEKFCETTIGC-KDKTLGPLLHALLQTPNFRVSVV 155 (492)
Q Consensus 111 ----lsGPn~A~-Ev~~~~pt~vvias-~~~~~~~~v~~lf~~~~f~v~~~ 155 (492)
.+||..|. ++.++.|+.++-.. .+++..+.++++|+.-..+++..
T Consensus 122 aG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~ 172 (359)
T PRK06545 122 AGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVL 172 (359)
T ss_pred CcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 24455554 77788877766553 45677889999998887777543
No 77
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=96.98 E-value=0.00021 Score=60.54 Aligned_cols=86 Identities=19% Similarity=0.254 Sum_probs=69.6
Q ss_pred CCCcChHHHHHHHHHHHHHHHHHHHCCCCCccccccccccchhhhhccCCCCHHHHHHHHhCCCChHHHHHHhcCCceee
Q psy14065 182 GLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQ 261 (492)
Q Consensus 182 ~~g~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s~RN~~~G~~l~~~G~~~~~~~~~~~~g~~~E 261 (492)
++-.|+.-++....+|||..+|+.+ |.|...+....+ .+.++|..+.++|..+. |.|+
T Consensus 8 K~~~N~~~a~~iaf~Nel~~lce~~--giD~~~V~~~~~-----------~d~ri~~~~~~pg~g~G--------G~Cl- 65 (96)
T PF00984_consen 8 KYAENAFRATKIAFANELARLCEKL--GIDVYEVIEAAN-----------TDPRIGPHYLRPGPGFG--------GSCL- 65 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--TSBHHHHHHHHH-----------TSTTTTSSS-S-SSS----------SSCH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHc-----------cCcccccccCCCCCCCC--------Ccch-
Confidence 8889999999999999999999999 999988887333 35667755556666665 8999
Q ss_pred cchhHHHHHHHHHhcCCCCCCchhhhhHHhh
Q psy14065 262 GPFTADEVNYMLKNKNMENKFPLFTAVHKIC 292 (492)
Q Consensus 262 G~~t~~~v~~l~~~~~l~~~~PI~~av~~Il 292 (492)
+++...+...+++++.+ .+++.++..++
T Consensus 66 -pkD~~~L~~~~~~~g~~--~~ll~~~~~~N 93 (96)
T PF00984_consen 66 -PKDPYALIYLAKELGYP--PQLLEAVININ 93 (96)
T ss_dssp -HHHHHHHHHHHHHTTSH--HHHHHHHHHHH
T ss_pred -hhhHHHHHHHHHHcCCC--HHHHHHHHHhc
Confidence 99999999999999984 77888887775
No 78
>PLN02858 fructose-bisphosphate aldolase
Probab=96.86 E-value=0.026 Score=68.49 Aligned_cols=217 Identities=13% Similarity=0.035 Sum_probs=130.1
Q ss_pred CeEEecCHHHHhccCCEEEEecCh-HHHHHHH---HHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEE
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPH-QFIVRLC---SQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTV 110 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs-~~~~~vl---~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~v 110 (492)
+....++..+++++||+||+++|. ..+++++ +.+.+.+.+++++|-++. +.| .+.+.+.+.+.+. +..+..
T Consensus 47 Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~ST-i~p---~~~~~la~~l~~~-g~~~~~ 121 (1378)
T PLN02858 47 GGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRST-ILP---LQLQKLEKKLTER-KEQIFL 121 (1378)
T ss_pred CCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCC-CCH---HHHHHHHHHHHhc-CCceEE
Confidence 355678899999999999999986 5678876 456667777787765542 232 3444444444432 211333
Q ss_pred EeCcChHHHHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEc-CCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHH
Q psy14065 111 LMGANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVV-DDVDAVEICGALKNIVACGAGFVDGLGLGDNTKA 189 (492)
Q Consensus 111 lsGPn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~-~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~a 189 (492)
+-.|-.-.--....-+-++.++-+++..+.++.+|+.-.-+++.- -+ .| -...+++-.|...
T Consensus 122 lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~~~~G~-~G----------------~g~~~KL~nN~l~ 184 (1378)
T PLN02858 122 VDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLYTFEGE-IG----------------AGSKVKMVNELLE 184 (1378)
T ss_pred EEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceEEecCC-CC----------------HhHHHHHHHHHHH
Confidence 333333322211122334445556677788888886433233321 22 22 2233578899999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCccccccccccchhhhhccCCCCHH---HHHHHHhCCCChHHHHHHhcCCceeecchhH
Q psy14065 190 AVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRK---VSEAFVKTGKSIKDLEDEMLNGQKLQGPFTA 266 (492)
Q Consensus 190 al~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s~RN~~---~G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~ 266 (492)
+....++.|...|+++. |-++++++.. +-+.+ ++++- .+..+.+...+.....+. ..+++
T Consensus 185 ~~~~~a~aEAl~la~~~--Gld~~~l~~v------l~~s~-g~s~~~~~~~~~~~~~d~~~~F~l~l--------~~KDl 247 (1378)
T PLN02858 185 GIHLVASAEAMALGVRA--GIHPWIIYDI------ISNAA-GSSWIFKNHVPLLLKDDYIEGRFLNV--------LVQNL 247 (1378)
T ss_pred HHHHHHHHHHHHHHHHc--CCCHHHHHHH------HhcCC-ccCHHHHhhhhHhhcCCCCCCchhHH--------HHHHH
Confidence 99999999999999999 9999988762 11111 12221 134454422221111111 15778
Q ss_pred HHHHHHHHhcCCCCCCchhhhhHHhh
Q psy14065 267 DEVNYMLKNKNMENKFPLFTAVHKIC 292 (492)
Q Consensus 267 ~~v~~l~~~~~l~~~~PI~~av~~Il 292 (492)
..+.+++++.++ .+|+...++++.
T Consensus 248 ~la~~~A~~~g~--~lpl~~~a~~~~ 271 (1378)
T PLN02858 248 GIVLDMAKSLPF--PLPLLAVAHQQL 271 (1378)
T ss_pred HHHHHHHHHcCC--CChHHHHHHHHH
Confidence 888888988888 488888877665
No 79
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.79 E-value=0.005 Score=70.24 Aligned_cols=109 Identities=13% Similarity=0.051 Sum_probs=71.6
Q ss_pred EecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEEEeCcChH
Q psy14065 38 AVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANLA 117 (492)
Q Consensus 38 at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~vlsGPn~A 117 (492)
.++|+.++++++|+||+|||++.+++++++++++++++++ |+..-|+.. .+.+.+++.++.. .++.+|||+
T Consensus 53 ~~~~~~~~~~~aDvVilavp~~~~~~vl~~l~~~~~~~~i-i~d~~svk~-------~~~~~l~~~~~~~-~~r~~~~hP 123 (735)
T PRK14806 53 GEEDLAEAVSGADVIVLAVPVLAMEKVLADLKPLLSEHAI-VTDVGSTKG-------NVVDAARAVFGEL-PAGFVPGHP 123 (735)
T ss_pred ccCCHHHHhcCCCEEEECCCHHHHHHHHHHHHHhcCCCcE-EEEcCCCch-------HHHHHHHHhcccc-CCeEEecCC
Confidence 4567888899999999999999999999999998876654 544444432 1124455554321 344566666
Q ss_pred H-------------HHhhcCCceEEEe-ecCcchHHHHHHHhcCCCceEEEc
Q psy14065 118 G-------------EVAEEKFCETTIG-CKDKTLGPLLHALLQTPNFRVSVV 155 (492)
Q Consensus 118 ~-------------Ev~~~~pt~vvia-s~~~~~~~~v~~lf~~~~f~v~~~ 155 (492)
. +..++.++.++.. ..+++..+.++++|+.-.-+++..
T Consensus 124 m~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~ 175 (735)
T PRK14806 124 IAGSEKSGVHAANADLFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHM 175 (735)
T ss_pred cCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEc
Confidence 3 3334555455443 344566788999998877666544
No 80
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.73 E-value=0.013 Score=59.26 Aligned_cols=141 Identities=14% Similarity=0.052 Sum_probs=92.3
Q ss_pred CeEEecCHHHHhccCCEEEEecC--hHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCc-eEEE
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVP--HQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIK-MTVL 111 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVP--s~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~-~~vl 111 (492)
.+.++++.+ ++++||+||.||| ++....+++++.++++++.+|+|.+-|+.+ ..+.+.+..+ -.+.
T Consensus 71 ~~~~~~~~~-~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~----------~~l~~~~~~~~r~~g 139 (295)
T PLN02545 71 RIRCTTNLE-ELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISI----------TRLASATQRPQQVIG 139 (295)
T ss_pred ceEeeCCHH-HhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCH----------HHHHhhcCCCcceEE
Confidence 467788874 6899999999999 888899999999998888888888888876 4455555421 1222
Q ss_pred eCcChHHHHhhcCCceEEEe-ecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHH
Q psy14065 112 MGANLAGEVAEEKFCETTIG-CKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAA 190 (492)
Q Consensus 112 sGPn~A~Ev~~~~pt~vvia-s~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aa 190 (492)
..|..+.... ..+.++-+ ..+++..+.++.+|..-...+....|.-|- ...-
T Consensus 140 ~h~~~pp~~~--~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g~-------------------------i~nr 192 (295)
T PLN02545 140 MHFMNPPPIM--KLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYPGF-------------------------IVNR 192 (295)
T ss_pred EeccCCcccC--ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCcccH-------------------------HHHH
Confidence 2233333322 11233222 346788889999998777777766776652 1224
Q ss_pred HHHHHHHHHHHHHHHHCCCCCcccc
Q psy14065 191 VIRLGLMEMVKFTELFYPGAKSATF 215 (492)
Q Consensus 191 l~t~g~~Em~~l~~~~~~G~~~~t~ 215 (492)
++...++|..++...- .++++.+
T Consensus 193 i~~~~~~ea~~~~~~g--v~~~~~i 215 (295)
T PLN02545 193 ILMPMINEAFYALYTG--VASKEDI 215 (295)
T ss_pred HHHHHHHHHHHHHHcC--CCCHHHH
Confidence 4555678888876543 3555544
No 81
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.62 E-value=0.0079 Score=65.02 Aligned_cols=160 Identities=13% Similarity=0.055 Sum_probs=98.6
Q ss_pred eEEecCHHHHh---ccCCEEEEecCh-HHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEEE
Q psy14065 36 VVAVPDVVEAA---KDADILVFVVPH-QFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVL 111 (492)
Q Consensus 36 I~at~dl~~al---~~aDiIilaVPs-~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~vl 111 (492)
+...+++++++ +++|+||++||+ +.++++++++.++++++++||.++++... .|.++..+ +.+ ..+..+
T Consensus 48 ~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~---~t~~~~~~-l~~---~gi~fv 120 (467)
T TIGR00873 48 IVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYP---DTERRYKE-LKA---KGILFV 120 (467)
T ss_pred ceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHH---HHHHHHHH-HHh---cCCEEE
Confidence 33445566655 568999999988 89999999999999989999888876553 33333322 222 233344
Q ss_pred eCcChHH-HHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHHH
Q psy14065 112 MGANLAG-EVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAA 190 (492)
Q Consensus 112 sGPn~A~-Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~aa 190 (492)
.+|-.-- +.++.-| ++.+++ +++..+.++.+|..-.-++ +..-++-.+|- .|-..-+++-.|....
T Consensus 121 dapVsGG~~gA~~G~-~im~GG-~~~a~~~~~p~L~~ia~~~---~~~~~~~~~G~--------~GsG~~vKmvhN~i~~ 187 (467)
T TIGR00873 121 GSGVSGGEEGARKGP-SIMPGG-SAEAWPLVAPIFQKIAAKV---DGEPCCTWIGP--------DGAGHYVKMVHNGIEY 187 (467)
T ss_pred cCCCCCCHHHHhcCC-cCCCCC-CHHHHHHHHHHHHHHhhhc---CCCCceEEECC--------cCHHHHHHHHHHHHHH
Confidence 4443333 3444445 555555 5567788888885432221 00111111110 1222234677899999
Q ss_pred HHHHHHHHHHHHHH-HHCCCCCcccccc
Q psy14065 191 VIRLGLMEMVKFTE-LFYPGAKSATFFE 217 (492)
Q Consensus 191 l~t~g~~Em~~l~~-~~~~G~~~~t~~g 217 (492)
.+..++.|...|++ .. |-+++.+..
T Consensus 188 ~~m~~~aEa~~ll~~~~--g~~~~~l~~ 213 (467)
T TIGR00873 188 GDMQLICEAYDILKDGL--GLSNEEIAE 213 (467)
T ss_pred HHHHHHHHHHHHHHHhc--CCCHHHHHH
Confidence 99999999999985 57 777766554
No 82
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=96.60 E-value=0.0084 Score=57.64 Aligned_cols=113 Identities=16% Similarity=0.156 Sum_probs=77.2
Q ss_pred cCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceec-c------CCccccHHHHHHhHhCCc-eEEE
Q psy14065 40 PDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRA-E------GGGIDLISHIITRNLKIK-MTVL 111 (492)
Q Consensus 40 ~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~-~------~~t~~~~se~i~e~l~~~-~~vl 111 (492)
.++++|++.+|+||++||-.++..++.+++..+. ++++|.++=.+++. + ......-++.+++.++.. ++--
T Consensus 52 ~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkA 130 (211)
T COG2085 52 GSNEDAAALADVVVLAVPFEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKA 130 (211)
T ss_pred CChHHHHhcCCEEEEeccHHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhh
Confidence 3456789999999999999999999999999886 88999888764320 0 013446788999988732 2111
Q ss_pred eCcChHHHHhh---c-CCceEEEeecCcchHHHHHHHhcCCCceEE
Q psy14065 112 MGANLAGEVAE---E-KFCETTIGCKDKTLGPLLHALLQTPNFRVS 153 (492)
Q Consensus 112 sGPn~A~Ev~~---~-~pt~vvias~~~~~~~~v~~lf~~~~f~v~ 153 (492)
-.=-+|..+.. . .-+.+.+|++|.+..+.+.+|.+.-.|+..
T Consensus 131 Fn~i~a~~l~~~~~~~~~~~v~vagDD~~Ak~~v~~L~~~iG~~~l 176 (211)
T COG2085 131 FNTIPAAVLADLAKPGGRRDVLVAGDDAEAKAVVAELAEDIGFRPL 176 (211)
T ss_pred hcccCHHHhccCCCcCCceeEEEecCcHHHHHHHHHHHHhcCccee
Confidence 11112222222 2 235577789888888888888877777654
No 83
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.57 E-value=0.0099 Score=54.89 Aligned_cols=105 Identities=15% Similarity=0.168 Sum_probs=62.5
Q ss_pred CeEEecCHHHHhccCCEEEEecCh-HHHHHHHHH--hhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhC-CceEE
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPH-QFIVRLCSQ--LLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLK-IKMTV 110 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs-~~~~~vl~~--l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~-~~~~v 110 (492)
+++...+++++++++|+||+++|+ +.+++++.. +.+++.+++++|.++.. +| .+. +.+.+.+. ..+.+
T Consensus 44 g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~-~p---~~~----~~~~~~~~~~g~~~ 115 (163)
T PF03446_consen 44 GAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTI-SP---ETS----RELAERLAAKGVRY 115 (163)
T ss_dssp TEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS---H---HHH----HHHHHHHHHTTEEE
T ss_pred hhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHhhccccceEEEecCCc-ch---hhh----hhhhhhhhhcccee
Confidence 488899999999999999999987 789999999 99999888888766532 32 222 33334332 22322
Q ss_pred EeCcChHHHHhhcCCceEEEeecCcchHHHHHHHhcC
Q psy14065 111 LMGANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQT 147 (492)
Q Consensus 111 lsGPn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~ 147 (492)
+-.|-+-.......-+.+.+.+=+++..+.++.+|+.
T Consensus 116 vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~ 152 (163)
T PF03446_consen 116 VDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEA 152 (163)
T ss_dssp EEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHH
T ss_pred eeeeeecccccccccceEEEccCCHHHHHHHHHHHHH
Confidence 2333222211221123333444456677888888754
No 84
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.45 E-value=0.038 Score=55.86 Aligned_cols=110 Identities=13% Similarity=0.177 Sum_probs=73.5
Q ss_pred CCeEEecCHHHHhccCCEEEEecChH--HHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhC--Cce-
Q psy14065 34 PNVVAVPDVVEAAKDADILVFVVPHQ--FIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLK--IKM- 108 (492)
Q Consensus 34 ~~I~at~dl~~al~~aDiIilaVPs~--~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~--~~~- 108 (492)
.++++++|++ +++++|+||.|||.+ ..+.+++++.++++++++++|.+-++.+ ..+.+.+. .++
T Consensus 70 ~~i~~~~~~~-~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~----------s~la~~~~~~~r~~ 138 (292)
T PRK07530 70 ARISTATDLE-DLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI----------TRLASATDRPERFI 138 (292)
T ss_pred hCeEeeCCHH-HhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH----------HHHHhhcCCcccEE
Confidence 5688899986 589999999999984 5678889999999888888888877765 23444443 122
Q ss_pred EE-EeCcChHHHHhhcCCceEEEe-ecCcchHHHHHHHhcCCCceEEEcCCcc
Q psy14065 109 TV-LMGANLAGEVAEEKFCETTIG-CKDKTLGPLLHALLQTPNFRVSVVDDVD 159 (492)
Q Consensus 109 ~v-lsGPn~A~Ev~~~~pt~vvia-s~~~~~~~~v~~lf~~~~f~v~~~~D~~ 159 (492)
.+ ...|.... +. ..++.+ +.+++..+.++.+|..-..+++...|.-
T Consensus 139 g~h~~~p~~~~----~~-vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p 186 (292)
T PRK07530 139 GIHFMNPVPVM----KL-VELIRGIATDEATFEAAKEFVTKLGKTITVAEDFP 186 (292)
T ss_pred EeeccCCcccC----ce-EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC
Confidence 21 12233321 11 122222 5667888999999987766676666655
No 85
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.32 E-value=0.015 Score=58.72 Aligned_cols=140 Identities=11% Similarity=0.006 Sum_probs=89.9
Q ss_pred CCCeEEecCHHHHhccCCEEEEecChHH--HHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCC--c-
Q psy14065 33 PPNVVAVPDVVEAAKDADILVFVVPHQF--IVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKI--K- 107 (492)
Q Consensus 33 ~~~I~at~dl~~al~~aDiIilaVPs~~--~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~--~- 107 (492)
+.++++++|+++++++||+||.|+|.+. -+.++.++.+++++++++.+-+-.+.+ +.+.+.+.. +
T Consensus 66 ~~~i~~~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~----------~~l~~~~~~~~r~ 135 (288)
T PRK09260 66 LARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP----------TEIASFTKRPERV 135 (288)
T ss_pred HhCeEEeCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH----------HHHHhhcCCcccE
Confidence 3568899999999999999999999975 457788888888877765555555554 234444432 1
Q ss_pred --eEEEeCcChHHHHhhcCCceEEEee--cCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCC
Q psy14065 108 --MTVLMGANLAGEVAEEKFCETTIGC--KDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGL 183 (492)
Q Consensus 108 --~~vlsGPn~A~Ev~~~~pt~vvias--~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~ 183 (492)
.-.+ .|... .|-..++++ .+++..+.++.++..-.-+++...|..|-=.
T Consensus 136 ~g~h~~-~Pv~~------~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~Gf~~-------------------- 188 (288)
T PRK09260 136 IAMHFF-NPVHK------MKLVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFPGFVT-------------------- 188 (288)
T ss_pred EEEecC-CCccc------CceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcccHHH--------------------
Confidence 1122 45432 233333333 3678889999999877767766666555432
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHCCCCCccccc
Q psy14065 184 GDNTKAAVIRLGLMEMVKFTELFYPGAKSATFF 216 (492)
Q Consensus 184 g~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~ 216 (492)
.-++..-++|..++...= -++++++-
T Consensus 189 -----nRl~~~~~~ea~~~~~~g--v~~~~~iD 214 (288)
T PRK09260 189 -----SRISALVGNEAFYMLQEG--VATAEDID 214 (288)
T ss_pred -----HHHHHHHHHHHHHHHHcC--CCCHHHHH
Confidence 256666777887776531 25555543
No 86
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.25 E-value=0.028 Score=57.22 Aligned_cols=110 Identities=19% Similarity=0.273 Sum_probs=68.9
Q ss_pred EecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEEEe-----
Q psy14065 38 AVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLM----- 112 (492)
Q Consensus 38 at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~vls----- 112 (492)
.+++++++++++|+||+|+|+.....+++++.++++++.+|+.+ -++.. .+.+.+.+.++..+-++.
T Consensus 56 ~~~~~~~~~~~aDvViiavp~~~~~~v~~~l~~~l~~~~iv~dv-gs~k~-------~~~~~~~~~~~~~~~~v~~hPm~ 127 (307)
T PRK07502 56 VTTSAAEAVKGADLVILCVPVGASGAVAAEIAPHLKPGAIVTDV-GSVKA-------SVIAAMAPHLPEGVHFIPGHPLA 127 (307)
T ss_pred ecCCHHHHhcCCCEEEECCCHHHHHHHHHHHHhhCCCCCEEEeC-ccchH-------HHHHHHHHhCCCCCeEEeCCCCC
Confidence 45677788999999999999999999999999888877655433 22221 111233333332212222
Q ss_pred -----CcChH-HHHhhcCCceEEEe-ecCcchHHHHHHHhcCCCceEEEc
Q psy14065 113 -----GANLA-GEVAEEKFCETTIG-CKDKTLGPLLHALLQTPNFRVSVV 155 (492)
Q Consensus 113 -----GPn~A-~Ev~~~~pt~vvia-s~~~~~~~~v~~lf~~~~f~v~~~ 155 (492)
||..+ .++.++.+..++.. +.+++..+.++++|+.-..+++..
T Consensus 128 g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~ 177 (307)
T PRK07502 128 GTEHSGPDAGFAELFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEM 177 (307)
T ss_pred CCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEc
Confidence 33333 25556665444433 345667788999998877777653
No 87
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=96.23 E-value=0.021 Score=56.88 Aligned_cols=113 Identities=23% Similarity=0.265 Sum_probs=68.3
Q ss_pred ecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCC--ceE---EEeC
Q psy14065 39 VPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKI--KMT---VLMG 113 (492)
Q Consensus 39 t~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~--~~~---vlsG 113 (492)
.++ .++++++|+||+|||...+.++++++.++++++++|.=++ +....+-+.+++.++. +++ =+.|
T Consensus 37 ~~~-~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~~~iv~Dv~--------SvK~~~~~~~~~~~~~~~~~v~~HPM~G 107 (258)
T PF02153_consen 37 STD-IEAVEDADLVVLAVPVSAIEDVLEEIAPYLKPGAIVTDVG--------SVKAPIVEAMERLLPEGVRFVGGHPMAG 107 (258)
T ss_dssp ESH-HHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-TTSEEEE----------S-CHHHHHHHHHHHTSSGEEEEEEESCS
T ss_pred cCC-HhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCCCcEEEEeC--------CCCHHHHHHHHHhcCcccceeecCCCCC
Confidence 344 5679999999999999999999999999998887765332 2233444677777662 111 1234
Q ss_pred c-----ChH-HHHhhcCCceEEEee-cCcchHHHHHHHhcCCCceEEEcCCcchh
Q psy14065 114 A-----NLA-GEVAEEKFCETTIGC-KDKTLGPLLHALLQTPNFRVSVVDDVDAV 161 (492)
Q Consensus 114 P-----n~A-~Ev~~~~pt~vvias-~~~~~~~~v~~lf~~~~f~v~~~~D~~Gv 161 (492)
| ..| .+..++++..+|-.. .+.+..+.+++++..-..++... |.--.
T Consensus 108 ~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~-~~eeH 161 (258)
T PF02153_consen 108 PEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEM-DAEEH 161 (258)
T ss_dssp TSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE---HHHH
T ss_pred CccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEc-CHHHH
Confidence 4 444 255567754443332 34567889999998877887765 44333
No 88
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=96.12 E-value=0.098 Score=56.98 Aligned_cols=153 Identities=9% Similarity=-0.062 Sum_probs=98.6
Q ss_pred eEEecCHHHHhcc---CCEEEEecChH-HHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEEE
Q psy14065 36 VVAVPDVVEAAKD---ADILVFVVPHQ-FIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVL 111 (492)
Q Consensus 36 I~at~dl~~al~~---aDiIilaVPs~-~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~vl 111 (492)
+....+++++++. +|+||++||.. .++++++.+.+.++++.++|-++..--. +-..+.+.+++ ..+-.+
T Consensus 57 ~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~----~t~~~~~~l~~---~Gi~fl 129 (493)
T PLN02350 57 LYGFKDPEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYE----NTERRIKEAAE---KGLLYL 129 (493)
T ss_pred cccCCCHHHHHhcCCCCCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHH----HHHHHHHHHHH---cCCeEE
Confidence 4456788888876 99999999874 7889999999999888888766543221 22222333332 233444
Q ss_pred eCcChHHH-HhhcCCceEEEeecCcchHHHHHHHhcCCCc-------eEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCC
Q psy14065 112 MGANLAGE-VAEEKFCETTIGCKDKTLGPLLHALLQTPNF-------RVSVVDDVDAVEICGALKNIVACGAGFVDGLGL 183 (492)
Q Consensus 112 sGPn~A~E-v~~~~pt~vvias~~~~~~~~v~~lf~~~~f-------~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~ 183 (492)
..|-.--+ .++.-| .+.+++ +++..+.++.+|..-.- -.|.. + .|. ..-+++
T Consensus 130 dapVSGG~~gA~~G~-~im~GG-~~~a~~~v~pvL~~ia~k~~~~~~v~~vG-~-~Ga----------------G~~vKl 189 (493)
T PLN02350 130 GMGVSGGEEGARNGP-SLMPGG-SFEAYKNIEDILEKVAAQVDDGPCVTYIG-P-GGA----------------GNFVKM 189 (493)
T ss_pred eCCCcCCHHHhcCCC-eEEecC-CHHHHHHHHHHHHHHhhhcCCCCcEEEeC-C-cCH----------------HHHHHH
Confidence 55544333 333334 565555 56677888888853221 12222 2 122 222477
Q ss_pred CcChHHHHHHHHHHHHHHHHHH-HCCCCCcccccc
Q psy14065 184 GDNTKAAVIRLGLMEMVKFTEL-FYPGAKSATFFE 217 (492)
Q Consensus 184 g~N~~aal~t~g~~Em~~l~~~-~~~G~~~~t~~g 217 (492)
-.|........++.|...|++. . |-+++.+..
T Consensus 190 v~N~i~~~~m~~iaEA~~l~~~~~--Gld~~~l~~ 222 (493)
T PLN02350 190 VHNGIEYGDMQLISEAYDVLKSVG--GLSNEELAE 222 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC--CCCHHHHHH
Confidence 7899999999999999999987 6 778887765
No 89
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.61 E-value=0.1 Score=53.52 Aligned_cols=141 Identities=18% Similarity=0.121 Sum_probs=91.9
Q ss_pred CCCeEEecC--HHHHhccCCEEEEecChH--HHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCC--
Q psy14065 33 PPNVVAVPD--VVEAAKDADILVFVVPHQ--FIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKI-- 106 (492)
Q Consensus 33 ~~~I~at~d--l~~al~~aDiIilaVPs~--~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~-- 106 (492)
..+|++++| +.+++++||+||-|||-. .-+.++.++.++.+++.++.|-|-++.+ ..|.+.+..
T Consensus 62 ~~~i~~~~~~~~~~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~----------~~la~~~~~p~ 131 (314)
T PRK08269 62 LARIAVVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLV----------TDLQRHVAHPE 131 (314)
T ss_pred HhCeEeecCcchHHHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCH----------HHHHhhcCCcc
Confidence 357888865 678899999999999774 4556788888888888887666666654 444444421
Q ss_pred ce--EEEeCcChHH---HHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhc
Q psy14065 107 KM--TVLMGANLAG---EVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGL 181 (492)
Q Consensus 107 ~~--~vlsGPn~A~---Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl 181 (492)
++ .-...|-+.. ||..+. ..+++..+.+..++..-..+++...|.-|
T Consensus 132 r~~g~Hf~~Pp~~~~lvEVv~g~-------~t~~e~~~~~~~ll~~lGk~~v~v~d~~G--------------------- 183 (314)
T PRK08269 132 RFLNAHWLNPAYLMPLVEVSPSD-------ATDPAVVDRLAALLERIGKVPVVCGPSPG--------------------- 183 (314)
T ss_pred cEEEEecCCccccCceEEEeCCC-------CCCHHHHHHHHHHHHHcCCcEEEecCCCC---------------------
Confidence 11 1111222111 111111 34567777788888765556665566655
Q ss_pred CCCcChHHHHHHHHHHHHHHHHHHHCCCCCcccccc
Q psy14065 182 GLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFE 217 (492)
Q Consensus 182 ~~g~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~g 217 (492)
+....++...++|..++++.- +.+++++..
T Consensus 184 ----fi~nri~~~~l~EAl~l~e~g--~~~~e~iD~ 213 (314)
T PRK08269 184 ----YIVPRIQALAMNEAARMVEEG--VASAEDIDK 213 (314)
T ss_pred ----cchHHHHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 134578888999999999887 888888764
No 90
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.45 E-value=0.022 Score=57.36 Aligned_cols=98 Identities=21% Similarity=0.120 Sum_probs=78.8
Q ss_pred hhcCCCcHHHHhhccceEEEEeeCCCCh--HHHHHHHhCCCCeEEEEcCCchhHhHhhhhHHHHHHHHHHhhhcCCC---
Q psy14065 321 VLISSLTSSHVAEEKFCETTIGCKDKTL--GPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLG--- 395 (492)
Q Consensus 321 ~l~gp~~a~ev~~~~~~~~~ia~~~~~~--~~~~~~~f~~~~f~~~~~~D~~gve~~galKNv~Ai~~Gi~~g~~~g--- 395 (492)
...+|.+..+... ..+++++.+... .+.++++|+...+.++.++|+.+.+|.-.+.|+..-..+.+-+...|
T Consensus 128 ~~~~p~~v~~~~~---g~~~ig~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~ 204 (304)
T PRK06522 128 ELEGPGVVRHTGG---GRLKIGEPDGESAAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELL 204 (304)
T ss_pred EecCCCEEEEcCC---CCEEEeCCCCCcHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHh
Confidence 4667877666644 345677655433 67899999999999999999999999999999988888877777765
Q ss_pred -ccHHHHHHHHhHHHHHHHHHHhCCCCCc
Q psy14065 396 -DNTKAAVIRLGLMEMVKFTELFYPGAKS 423 (492)
Q Consensus 396 -~N~~aal~~~g~~E~~~~~~~~~~g~~~ 423 (492)
++....++.+.++|+..+++++ |.+.
T Consensus 205 ~~~~~~~l~~~~~~E~~~v~~a~--G~~~ 231 (304)
T PRK06522 205 ADPDYRALIRALMEEVAAVAEAE--GVHL 231 (304)
T ss_pred cCccHHHHHHHHHHHHHHHHHHc--CCCC
Confidence 3677899999999999999997 6553
No 91
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=95.08 E-value=0.11 Score=52.33 Aligned_cols=109 Identities=14% Similarity=0.208 Sum_probs=64.4
Q ss_pred ecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceE---EEeCcC
Q psy14065 39 VPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMT---VLMGAN 115 (492)
Q Consensus 39 t~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~---vlsGPn 115 (492)
+++. ++++++|+||+|+|++.+.++++++.++++++.+ |+-+-++.. . ..+.+.+.. .+++ -+.||.
T Consensus 49 ~~~~-~~~~~aDlVilavp~~~~~~~~~~l~~~l~~~~i-i~d~~Svk~---~----~~~~~~~~~-~~~v~~HPm~G~~ 118 (279)
T PRK07417 49 STDL-SLLKDCDLVILALPIGLLLPPSEQLIPALPPEAI-VTDVGSVKA---P----IVEAWEKLH-PRFVGSHPMAGTA 118 (279)
T ss_pred cCCH-hHhcCCCEEEEcCCHHHHHHHHHHHHHhCCCCcE-EEeCcchHH---H----HHHHHHHhh-CCceeeCCcCCCC
Confidence 4455 4689999999999999999999999998876654 444444443 0 112222221 1221 122333
Q ss_pred h-----HH-HHhhcCCceEEEe-ecCcchHHHHHHHhcCCCceEEEcCC
Q psy14065 116 L-----AG-EVAEEKFCETTIG-CKDKTLGPLLHALLQTPNFRVSVVDD 157 (492)
Q Consensus 116 ~-----A~-Ev~~~~pt~vvia-s~~~~~~~~v~~lf~~~~f~v~~~~D 157 (492)
. +. .+..+.+..+|-. ..+++..+.++++++.-..+++..+.
T Consensus 119 ~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~ 167 (279)
T PRK07417 119 ESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGSKIYTADP 167 (279)
T ss_pred cchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 1 11 2345554433333 23456678889999887777765443
No 92
>PLN02712 arogenate dehydrogenase
Probab=94.96 E-value=0.068 Score=60.40 Aligned_cols=110 Identities=12% Similarity=0.160 Sum_probs=73.1
Q ss_pred eEEecCHHHHhc-cCCEEEEecChHHHHHHHHHhhc-cCCCCCeEEEE--EccceeccCCccccHHHHHHhHhCCc-eEE
Q psy14065 36 VVAVPDVVEAAK-DADILVFVVPHQFIVRLCSQLLG-KIKPDAVGLSL--IKGFDRAEGGGIDLISHIITRNLKIK-MTV 110 (492)
Q Consensus 36 I~at~dl~~al~-~aDiIilaVPs~~~~~vl~~l~~-~l~~~~~iIs~--~KGl~~~~~~t~~~~se~i~e~l~~~-~~v 110 (492)
+...+|++++++ ++|+||+|||+..+.++++++.. +++++++++.+ +|+... +.+.+.++.. -.+
T Consensus 412 v~~~~~~~el~~~~aDvVILavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~----------~~~~~~l~~~~~~v 481 (667)
T PLN02712 412 VSYFSDADDLCEEHPEVILLCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPR----------NLFLQHLPQDFDIL 481 (667)
T ss_pred CeEeCCHHHHHhcCCCEEEECCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHH----------HHHHHhccCCCceE
Confidence 445678888775 59999999999999999999986 57778888888 554433 6677766533 356
Q ss_pred EeCcChHHHHhh-c---CC---ceEEEeecC--cchHHHHHHHhcCCCceEEEc
Q psy14065 111 LMGANLAGEVAE-E---KF---CETTIGCKD--KTLGPLLHALLQTPNFRVSVV 155 (492)
Q Consensus 111 lsGPn~A~Ev~~-~---~p---t~vvias~~--~~~~~~v~~lf~~~~f~v~~~ 155 (492)
...|.+..|... + .| ....+.+.. .+..+.+.++|..-.-+++..
T Consensus 482 ~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~m 535 (667)
T PLN02712 482 CTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEM 535 (667)
T ss_pred eeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEe
Confidence 688888888652 2 21 112222221 233455567877766666644
No 93
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=94.81 E-value=0.19 Score=54.29 Aligned_cols=155 Identities=12% Similarity=0.029 Sum_probs=98.4
Q ss_pred CCeEEecCHHHHhcc---CCEEEEecChH-HHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceE
Q psy14065 34 PNVVAVPDVVEAAKD---ADILVFVVPHQ-FIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMT 109 (492)
Q Consensus 34 ~~I~at~dl~~al~~---aDiIilaVPs~-~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~ 109 (492)
.++....+++++++. +|+||++||.. .++++++.+.+++.++.++|-.+...-. .|.++ .+.+++ ..+-
T Consensus 37 ~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l~~GdiiID~gn~~~~---~t~~~-~~~l~~---~Gi~ 109 (459)
T PRK09287 37 KKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLLEKGDIIIDGGNSNYK---DTIRR-EKELAE---KGIH 109 (459)
T ss_pred CCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcCCCCCEEEECCCCCHH---HHHHH-HHHHHh---cCCe
Confidence 357788899998875 89999999885 8899999999999988877765433221 22222 222222 2233
Q ss_pred EEeCcChHH-HHhhcCCceEEEeecCcchHHHHHHHhcCCCce--------EEEcCCcchhhhhhhhHHHHHHHHHHhhh
Q psy14065 110 VLMGANLAG-EVAEEKFCETTIGCKDKTLGPLLHALLQTPNFR--------VSVVDDVDAVEICGALKNIVACGAGFVDG 180 (492)
Q Consensus 110 vlsGPn~A~-Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~--------v~~~~D~~GvEl~galKNv~AIa~Gi~~g 180 (492)
.+..|-.-- +.++.-| ++.+++ +++..+.++.+|..-.-+ .|+... |-..-
T Consensus 110 fvdapVSGG~~gA~~G~-siM~GG-~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~------------------GaGh~ 169 (459)
T PRK09287 110 FIGMGVSGGEEGALHGP-SIMPGG-QKEAYELVAPILEKIAAKVEDGEPCVTYIGPD------------------GAGHY 169 (459)
T ss_pred EEecCCCCCHHHHhcCC-EEEEeC-CHHHHHHHHHHHHHHhhhhcCCCCceeeeCCC------------------CHHHH
Confidence 333333333 3334445 666666 566778888888542222 122211 12222
Q ss_pred cCCCcChHHHHHHHHHHHHHHHHH-HHCCCCCcccccc
Q psy14065 181 LGLGDNTKAAVIRLGLMEMVKFTE-LFYPGAKSATFFE 217 (492)
Q Consensus 181 l~~g~N~~aal~t~g~~Em~~l~~-~~~~G~~~~t~~g 217 (492)
+++-+|..-..+..++.|...|++ .+ |-+++.+..
T Consensus 170 vKmvhN~ie~~~mq~iaEa~~l~~~~~--Gl~~~~l~~ 205 (459)
T PRK09287 170 VKMVHNGIEYGDMQLIAEAYDLLKDGL--GLSAEEIAD 205 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHH
Confidence 366789999999999999999998 47 777766543
No 94
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=94.78 E-value=0.17 Score=53.27 Aligned_cols=103 Identities=11% Similarity=0.147 Sum_probs=67.8
Q ss_pred cCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEE----EeCcC
Q psy14065 40 PDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTV----LMGAN 115 (492)
Q Consensus 40 ~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~v----lsGPn 115 (492)
++.++++.++|+||+|||.....++++++.+ ++++++|+.++ ++ ...+.+.+.+.++.+ .+ +.||.
T Consensus 134 ~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~~~iv~Dv~-Sv-------K~~~~~~~~~~~~~~-fvg~HPm~G~~ 203 (374)
T PRK11199 134 DRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPEDCILVDLT-SV-------KNAPLQAMLAAHSGP-VLGLHPMFGPD 203 (374)
T ss_pred hhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCCCcEEEECC-Cc-------cHHHHHHHHHhCCCC-EEeeCCCCCCC
Confidence 3667888999999999999999999999998 88888777652 11 112234444444332 33 56775
Q ss_pred hHHHHhhcCCceEEEe-ecCcchHHHHHHHhcCCCceEEEcC
Q psy14065 116 LAGEVAEEKFCETTIG-CKDKTLGPLLHALLQTPNFRVSVVD 156 (492)
Q Consensus 116 ~A~Ev~~~~pt~vvia-s~~~~~~~~v~~lf~~~~f~v~~~~ 156 (492)
... ..+. .+++. ..+++..+.+.++++.-..+++..+
T Consensus 204 ~~~--~~~~--~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~ 241 (374)
T PRK11199 204 VGS--LAKQ--VVVVCDGRQPEAYQWLLEQIQVWGARLHRIS 241 (374)
T ss_pred Ccc--cCCC--EEEEcCCCCchHHHHHHHHHHHCCCEEEECC
Confidence 532 2222 23333 4455677888999988877776654
No 95
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=94.34 E-value=0.035 Score=49.41 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=33.2
Q ss_pred cCHHHHhccCCEEEEecChHHHHHHHHHhhcc--CCCCCeEEEEEccce
Q psy14065 40 PDVVEAAKDADILVFVVPHQFIVRLCSQLLGK--IKPDAVGLSLIKGFD 86 (492)
Q Consensus 40 ~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~--l~~~~~iIs~~KGl~ 86 (492)
.++.++++++|++||+||-+.+..+.++|..+ +.+++++++++=.+.
T Consensus 60 ~~~~~~~~~aDlv~iavpDdaI~~va~~La~~~~~~~g~iVvHtSGa~~ 108 (127)
T PF10727_consen 60 LDLEEILRDADLVFIAVPDDAIAEVAEQLAQYGAWRPGQIVVHTSGALG 108 (127)
T ss_dssp --TTGGGCC-SEEEE-S-CCHHHHHHHHHHCC--S-TT-EEEES-SS--
T ss_pred cccccccccCCEEEEEechHHHHHHHHHHHHhccCCCCcEEEECCCCCh
Confidence 45668899999999999999999999999998 668898888775544
No 96
>KOG0409|consensus
Probab=93.94 E-value=0.49 Score=47.94 Aligned_cols=217 Identities=15% Similarity=0.143 Sum_probs=130.8
Q ss_pred CeEEecCHHHHhccCCEEEEecChH-HHHHHHHHhhccCC---CCCeEEEEEccceeccCCccccHHHHHHhHhC-CceE
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQ-FIVRLCSQLLGKIK---PDAVGLSLIKGFDRAEGGGIDLISHIITRNLK-IKMT 109 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~-~~~~vl~~l~~~l~---~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~-~~~~ 109 (492)
+-++.+.+.|+.+++|+||.+||.. .+++++..-...+. +..+...-+.-++| + ++..|.+... ....
T Consensus 78 Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp---~----~s~ei~~~i~~~~~~ 150 (327)
T KOG0409|consen 78 GARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDP---D----TSLEIAKAISNKGGR 150 (327)
T ss_pred chhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCH---H----HHHHHHHHHHhCCCe
Confidence 4455678889999999999999764 66766644322222 22221101111222 1 2333333332 3455
Q ss_pred EEeCcChHHHHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCcChHH
Q psy14065 110 VLMGANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKA 189 (492)
Q Consensus 110 vlsGPn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~N~~a 189 (492)
.+=.|-.--.-....-+-+..++-|++..+..+.+|+.-.-++.+ +| ++|.-...++..|...
T Consensus 151 ~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~~~~---------~G--------~~GnG~~~Kl~nnm~~ 213 (327)
T KOG0409|consen 151 FVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNVVF---------LG--------GVGNGQAAKLCNNMLL 213 (327)
T ss_pred EEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcceEEE---------ec--------ccCchHHHHHHHHHHH
Confidence 566665555544545456677788888889999999765422222 11 2344455578889999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCccccccccccchhhhhccCCCCHHHHHHHHhCCCChHHHHHHhcCCceeecchhHHHH
Q psy14065 190 AVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEV 269 (492)
Q Consensus 190 al~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s~RN~~~G~~l~~~G~~~~~~~~~~~~g~~~EG~~t~~~v 269 (492)
+..-.|++|-.-|+..+ |-++.++++. +-+ -.|.|+-=+-.|+.+.+.-+.-......+ .+++...
T Consensus 214 g~~M~g~aEal~la~r~--GLd~~~l~ei--ln~--G~~~S~~~~~~~p~m~k~dy~p~f~~~~m--------~KDLgla 279 (327)
T KOG0409|consen 214 GSSMVGLAEALALADRL--GLDAKKLLEI--LNT--GRCWSSMFYNPVPGMLKGDYNPGFALKLM--------VKDLGLA 279 (327)
T ss_pred HHHHHHHHHHHHHHHHc--CCCHHHHHHH--Hhc--CCcccHHHhCcCchhhcCCCCCcchHHHH--------HHHHHHH
Confidence 99999999999999999 9999998872 211 34555411224555554222222222222 4677777
Q ss_pred HHHHHhcCCCCCCchhhhhHHh
Q psy14065 270 NYMLKNKNMENKFPLFTAVHKI 291 (492)
Q Consensus 270 ~~l~~~~~l~~~~PI~~av~~I 291 (492)
.+.++..+. .+|+....+++
T Consensus 280 ~~~a~~~~~--~~P~~slA~ql 299 (327)
T KOG0409|consen 280 LNAAESVKV--PMPLGSLAHQL 299 (327)
T ss_pred HHhhhccCC--CCchHHHHHHH
Confidence 777887776 48887766655
No 97
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=93.74 E-value=0.15 Score=44.92 Aligned_cols=73 Identities=19% Similarity=0.208 Sum_probs=49.6
Q ss_pred CCCeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEEEe
Q psy14065 33 PPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLM 112 (492)
Q Consensus 33 ~~~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~vls 112 (492)
+.++.+++|++++++.+|++|-.+-|+.+.+.++...++ +.++|+.|.|++.. .. +.+++. .....++.
T Consensus 52 ~~~~~v~~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~~---~~----~~l~~~-a~~~~vl~ 120 (124)
T PF01113_consen 52 PLGVPVTDDLEELLEEADVVIDFTNPDAVYDNLEYALKH---GVPLVIGTTGFSDE---QI----DELEEL-AKKIPVLI 120 (124)
T ss_dssp T-SSBEBS-HHHHTTH-SEEEEES-HHHHHHHHHHHHHH---T-EEEEE-SSSHHH---HH----HHHHHH-TTTSEEEE
T ss_pred CcccccchhHHHhcccCCEEEEcCChHHhHHHHHHHHhC---CCCEEEECCCCCHH---HH----HHHHHH-hccCCEEE
Confidence 567889999999999999999999888888878777654 78899999999851 11 333332 23477778
Q ss_pred CcCh
Q psy14065 113 GANL 116 (492)
Q Consensus 113 GPn~ 116 (492)
-|||
T Consensus 121 a~Nf 124 (124)
T PF01113_consen 121 APNF 124 (124)
T ss_dssp -SSS
T ss_pred eCCC
Confidence 8886
No 98
>PRK08818 prephenate dehydrogenase; Provisional
Probab=93.48 E-value=0.23 Score=52.20 Aligned_cols=106 Identities=9% Similarity=0.104 Sum_probs=62.9
Q ss_pred ecCHHHHhccCCEEEEecChHHHHHHHHHhhcc---CCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceE---EEe
Q psy14065 39 VPDVVEAAKDADILVFVVPHQFIVRLCSQLLGK---IKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMT---VLM 112 (492)
Q Consensus 39 t~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~---l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~---vls 112 (492)
.+++.+++++||+||+|||...+.+++++++++ ++++++|.=++ ++...+-+.+.+. ..+++ =+.
T Consensus 42 ~~~~~~~v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~~~iVtDVg--------SvK~~i~~~~~~~-~~~fVG~HPMa 112 (370)
T PRK08818 42 SLDPATLLQRADVLIFSAPIRHTAALIEEYVALAGGRAAGQLWLDVT--------SIKQAPVAAMLAS-QAEVVGLHPMT 112 (370)
T ss_pred cCCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCCCeEEEECC--------CCcHHHHHHHHhc-CCCEEeeCCCC
Confidence 457788899999999999999999999999986 56666554221 1111122222222 11211 134
Q ss_pred CcChHHHHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEc
Q psy14065 113 GANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVV 155 (492)
Q Consensus 113 GPn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~ 155 (492)
||... ++.++.+..+| -....+....++++++.-.-+++..
T Consensus 113 G~E~s-~lf~g~~~ilt-p~~~~~~~~~v~~l~~~~Ga~v~~~ 153 (370)
T PRK08818 113 APPKS-PTLKGRVMVVC-EARLQHWSPWVQSLCSALQAECVYA 153 (370)
T ss_pred CCCCC-cccCCCeEEEe-CCCchhHHHHHHHHHHHcCCEEEEc
Confidence 55433 34567653333 2334454667788887766666544
No 99
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.36 E-value=0.11 Score=46.65 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=45.5
Q ss_pred HHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhC
Q psy14065 44 EAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLK 105 (492)
Q Consensus 44 ~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~ 105 (492)
+..+..|+||+||++.+++++++.++++++++.+|+++--|+... +.+.+.++
T Consensus 63 ~~~~~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~---------~~l~~~~~ 115 (151)
T PF02558_consen 63 ADAGPYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNE---------EVLAEYFP 115 (151)
T ss_dssp HHHSTESEEEE-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHH---------HHHHCHST
T ss_pred hccCCCcEEEEEecccchHHHHHHHhhccCCCcEEEEEeCCCCcH---------HHHHHHcC
Confidence 456899999999999999999999999999888999999998852 77777775
No 100
>PLN02712 arogenate dehydrogenase
Probab=93.30 E-value=0.43 Score=54.04 Aligned_cols=112 Identities=6% Similarity=0.078 Sum_probs=72.3
Q ss_pred CeEEecCHHHHh-ccCCEEEEecChHHHHHHHHHhh-ccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCc-eEEE
Q psy14065 35 NVVAVPDVVEAA-KDADILVFVVPHQFIVRLCSQLL-GKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIK-MTVL 111 (492)
Q Consensus 35 ~I~at~dl~~al-~~aDiIilaVPs~~~~~vl~~l~-~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~-~~vl 111 (492)
++...+|+++++ +++|+||+|||++.+.++++++. ++++++++|+.++ . ....+.+.+.+.++.. .++-
T Consensus 94 Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l~~~~l~~g~iVvDv~---S-----vK~~~~~~l~~~l~~~~~~v~ 165 (667)
T PLN02712 94 GVSFFLDPHDLCERHPDVILLCTSIISTENVLKSLPLQRLKRNTLFVDVL---S-----VKEFAKNLLLDYLPEDFDIIC 165 (667)
T ss_pred CCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhhhhhcCCCCeEEEECC---C-----CcHHHHHHHHHhcCCCCeEEe
Confidence 355677888755 57999999999999999999997 6788888888774 1 2223445666666532 3565
Q ss_pred eCcChHHHHh----hcCCceEEEe----ecCc---chHHHHHHHhcCCCceEEEcC
Q psy14065 112 MGANLAGEVA----EEKFCETTIG----CKDK---TLGPLLHALLQTPNFRVSVVD 156 (492)
Q Consensus 112 sGPn~A~Ev~----~~~pt~vvia----s~~~---~~~~~v~~lf~~~~f~v~~~~ 156 (492)
.-|.|-.|.. .+.+ +++. ..+. +..+.+.++|..-.-+++..+
T Consensus 166 ~HPMaG~e~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms 219 (667)
T PLN02712 166 SHPMFGPQSAKHGWDGLR--FVYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS 219 (667)
T ss_pred eCCcCCCccccchhccCc--EEEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence 6666666633 3343 2222 2222 234566688887777777653
No 101
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=92.65 E-value=0.53 Score=47.58 Aligned_cols=123 Identities=18% Similarity=0.173 Sum_probs=73.3
Q ss_pred HHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCc-eEE----EeCcC-h
Q psy14065 43 VEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIK-MTV----LMGAN-L 116 (492)
Q Consensus 43 ~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~-~~v----lsGPn-~ 116 (492)
.+++.++|+||+|||-....++++++.++++++.+|.=++ ++...+-+.+++.++.. -++ +.||. +
T Consensus 59 ~~~~~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv~Dv~--------S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~ 130 (279)
T COG0287 59 AEAAAEADLVIVAVPIEATEEVLKELAPHLKKGAIVTDVG--------SVKSSVVEAMEKYLPGDVRFVGGHPMFGPEAD 130 (279)
T ss_pred hhhcccCCEEEEeccHHHHHHHHHHhcccCCCCCEEEecc--------cccHHHHHHHHHhccCCCeeEecCCCCCCccc
Confidence 6778899999999999999999999999999888765221 22333446666666421 122 34553 1
Q ss_pred HHHHhhcCCceEEEe-ec--CcchHHHHHHHhcCCCceEEEcC----CcchhhhhhhhHHHHHHHHHH
Q psy14065 117 AGEVAEEKFCETTIG-CK--DKTLGPLLHALLQTPNFRVSVVD----DVDAVEICGALKNIVACGAGF 177 (492)
Q Consensus 117 A~Ev~~~~pt~vvia-s~--~~~~~~~v~~lf~~~~f~v~~~~----D~~GvEl~galKNv~AIa~Gi 177 (492)
+ +..++. -+++. +. +.+....+.+++..-.-+++..+ |-+- -+..+|--++|++.+-
T Consensus 131 ~-~lf~~~--~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~-a~vshLpH~~a~al~~ 194 (279)
T COG0287 131 A-GLFENA--VVVLTPSEGTEKEWVEEVKRLWEALGARLVEMDAEEHDRVM-AAVSHLPHAAALALAN 194 (279)
T ss_pred c-cccCCC--EEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcChHHHhHHH-HHHHHHHHHHHHHHHH
Confidence 1 223333 34444 22 23577888888887666665543 2222 2233455555555443
No 102
>PRK08605 D-lactate dehydrogenase; Validated
Probab=91.82 E-value=0.15 Score=52.79 Aligned_cols=53 Identities=23% Similarity=0.191 Sum_probs=42.1
Q ss_pred CeEEecCHHHHhccCCEEEEecChHHHHHHH--HHhhccCCCCCeEEEEEcccee
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQFIVRLC--SQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~~~~~vl--~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
.+..++++++++++||+|++++|.......+ +++.+.++++.++|++++|...
T Consensus 187 ~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~v 241 (332)
T PRK08605 187 YVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLV 241 (332)
T ss_pred hccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCccc
Confidence 3455678999999999999999986544444 3455667889999999999887
No 103
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=91.72 E-value=1.2 Score=44.39 Aligned_cols=125 Identities=16% Similarity=0.103 Sum_probs=83.2
Q ss_pred hcCCCChHHHHHHHhcCCCCCCccc-ccchhhcCCCcHHHHhhccceEEEEeeCCC--ChHHHHHHHhCCCCeEEEEcCC
Q psy14065 292 CIGEMKPQQFIDAIREHPDHKVSTA-QKEAVLISSLTSSHVAEEKFCETTIGCKDK--TLGPLLHALLQTPNFRVSVVDD 368 (492)
Q Consensus 292 l~~~~~p~~~i~~L~~~~~~~~~~~-~~~~~l~gp~~a~ev~~~~~~~~~ia~~~~--~~~~~~~~~f~~~~f~~~~~~D 368 (492)
+.++....+.+......+. +.... ...+...||.+..... +..++++..+. +....+.++|+...|++..++|
T Consensus 92 ~qNG~g~~~~l~~~~~~~~-v~~g~~~~~~~~~~pg~v~~~~---~~~~~iG~~~~~~~~~~~l~~~l~~~~~~~~~~~d 167 (293)
T TIGR00745 92 LQNGLGHEERLRELLPARR-ILGGVVTHGAVREEPGVVHHAG---LGATKIGDYVGENEAVEALAELLNEAGIPAELHGD 167 (293)
T ss_pred ccCCCCCHHHHHHHhCccC-EEEEEEEEeeEEcCCcEEEEec---cccEEEecCCCchHHHHHHHHHHHhCCCCCEecch
Confidence 4556666665554432221 11100 1123455666443332 33466776553 3356899999999999999999
Q ss_pred chhHhHhhhhHHH-HHHHHHHhhhcCCC---ccH-HHHHHHHhHHHHHHHHHHhCCCCCc
Q psy14065 369 VDAVEICGALKNI-VACGAGFVDGLGLG---DNT-KAAVIRLGLMEMVKFTELFYPGAKS 423 (492)
Q Consensus 369 ~~gve~~galKNv-~Ai~~Gi~~g~~~g---~N~-~aal~~~g~~E~~~~~~~~~~g~~~ 423 (492)
+.+.+|.-.+.|+ +...+++.+ ..+| .|. ...++...++|+..++++. |.+.
T Consensus 168 i~~~~w~Kl~~N~~~n~l~al~~-~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~--G~~~ 224 (293)
T TIGR00745 168 ILAAIWKKLLVNAAINPLTALLD-CKNGELLENPEARELLRRLMDEVVRVARAE--GVDL 224 (293)
T ss_pred HHHHHHHHHhheechhHHHHHHC-CccceeccChhHHHHHHHHHHHHHHHHHhC--CCCC
Confidence 9999999999998 667777776 4444 443 5689999999999999997 6543
No 104
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=91.56 E-value=0.63 Score=46.60 Aligned_cols=90 Identities=13% Similarity=0.073 Sum_probs=62.9
Q ss_pred CeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhC-CceEEEeC
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLK-IKMTVLMG 113 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~-~~~~vlsG 113 (492)
.+.+++|+++...++|++|.++||....+.+..... .+.++|+.+.|++. ... +.+.+... ..+.++.+
T Consensus 55 gv~~~~d~~~l~~~~DvVIdfT~p~~~~~~~~~al~---~g~~vVigttg~~~---e~~----~~l~~aA~~~g~~v~~a 124 (266)
T TIGR00036 55 GVPVTDDLEAVETDPDVLIDFTTPEGVLNHLKFALE---HGVRLVVGTTGFSE---EDK----QELADLAEKAGIAAVIA 124 (266)
T ss_pred CceeeCCHHHhcCCCCEEEECCChHHHHHHHHHHHH---CCCCEEEECCCCCH---HHH----HHHHHHHhcCCccEEEE
Confidence 577889998875578999999999988887777544 56677877889875 122 22333222 24778899
Q ss_pred cChHHHHhhcCCceEEEeecCcchHHHHHHHh
Q psy14065 114 ANLAGEVAEEKFCETTIGCKDKTLGPLLHALL 145 (492)
Q Consensus 114 Pn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf 145 (492)
|||+.-+.--+ ...+.+.++|
T Consensus 125 ~NfSlGv~ll~-----------~~~~~aa~~l 145 (266)
T TIGR00036 125 PNFSIGVNLMF-----------KLLEKAAKYL 145 (266)
T ss_pred CcccHHHHHHH-----------HHHHHHHHhc
Confidence 99997776544 5556666666
No 105
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=91.20 E-value=1.8 Score=47.53 Aligned_cols=142 Identities=15% Similarity=0.083 Sum_probs=86.0
Q ss_pred CCCeEEecCHHHHhccCCEEEEecCh--HHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCC--ce
Q psy14065 33 PPNVVAVPDVVEAAKDADILVFVVPH--QFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKI--KM 108 (492)
Q Consensus 33 ~~~I~at~dl~~al~~aDiIilaVPs--~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~--~~ 108 (492)
..++++++|+++ +.+||+||-|||- +.-+.++.++..+.+++.++.|-|-++.+ ..|.+.+.. ++
T Consensus 70 ~~~i~~~~~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i----------~~iA~~~~~p~r~ 138 (503)
T TIGR02279 70 LKRLIPVTDLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI----------TAIAAGLARPERV 138 (503)
T ss_pred HhccEEeCCHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH----------HHHHHhcCcccce
Confidence 357899999965 6899999999986 45556677888888777776666666665 233333321 11
Q ss_pred E--EEeCcChHHHHhhcCCceEEEe-ecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCc
Q psy14065 109 T--VLMGANLAGEVAEEKFCETTIG-CKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGD 185 (492)
Q Consensus 109 ~--vlsGPn~A~Ev~~~~pt~vvia-s~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~ 185 (492)
. -...|-... ....++-+ ..+++..+.+..++..-.-.++...|..|. +=|
T Consensus 139 ~G~HFf~Papv~-----~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf-----i~N---------------- 192 (503)
T TIGR02279 139 AGLHFFNPAPVM-----ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF-----IVN---------------- 192 (503)
T ss_pred EEEeccCccccC-----ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc-----HHH----------------
Confidence 0 111111111 11222222 235677888888887776677666777773 111
Q ss_pred ChHHHHHHHHHHHHHHHHHHHCCCCCcccccc
Q psy14065 186 NTKAAVIRLGLMEMVKFTELFYPGAKSATFFE 217 (492)
Q Consensus 186 N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~g 217 (492)
-++...++|..+|.+.- +++++.+..
T Consensus 193 ----rl~~~~~~EA~~l~e~g--~a~~~~ID~ 218 (503)
T TIGR02279 193 ----RVARPYYAEALRALEEQ--VAAPAVLDA 218 (503)
T ss_pred ----HHHHHHHHHHHHHHHcC--CCCHHHHHH
Confidence 23345778888887765 677765543
No 106
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=90.96 E-value=0.32 Score=50.36 Aligned_cols=52 Identities=25% Similarity=0.268 Sum_probs=43.0
Q ss_pred eEEecCHHHHhccCCEEEEecChHH--HHHHHHHhhccCCCCCeEEEEEcccee
Q psy14065 36 VVAVPDVVEAAKDADILVFVVPHQF--IVRLCSQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 36 I~at~dl~~al~~aDiIilaVPs~~--~~~vl~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
++.+.++++++++||+|++++|... ...+.+++.++++++.++|++++|-..
T Consensus 186 ~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~v 239 (330)
T PRK12480 186 LTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVI 239 (330)
T ss_pred hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCcccc
Confidence 3456789999999999999999753 455567777788899999999999887
No 107
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=89.93 E-value=0.61 Score=47.95 Aligned_cols=99 Identities=14% Similarity=0.126 Sum_probs=69.7
Q ss_pred hhcCCCcHHHHhhccceEEEEeeCCCChHHHHHHHhCCCCeEEEEcCCchhHhHhhhhHHHHHHHHHHhhhcCCC----c
Q psy14065 321 VLISSLTSSHVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLG----D 396 (492)
Q Consensus 321 ~l~gp~~a~ev~~~~~~~~~ia~~~~~~~~~~~~~f~~~~f~~~~~~D~~gve~~galKNv~Ai~~Gi~~g~~~g----~ 396 (492)
+..||..+.....++ .+++. .+..+.++++|+..+++++.++|+.+.+|.-.+.|++...+. +.+..+| +
T Consensus 135 ~~~~pg~~~~~~~g~---l~~~~--~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~a-l~~~~~~~l~~~ 208 (341)
T PRK08229 135 ISRGPGAFHQGTSGA---LAIEA--SPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNA-LSGLPLKEELAQ 208 (341)
T ss_pred EecCCceEEecCCCc---eEecC--CchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHH-HhCCchHHHhcC
Confidence 566777654333332 34443 244578999999999999999999999999999997433333 2233332 3
Q ss_pred cHHHHHHHHhHHHHHHHHHHhCCCCCccccc
Q psy14065 397 NTKAAVIRLGLMEMVKFTELFYPGAKSATFF 427 (492)
Q Consensus 397 N~~aal~~~g~~E~~~~~~~~~~g~~~~t~~ 427 (492)
.....++...+.|...++++. |-++..+.
T Consensus 209 ~~~~~~~~~~~~E~~~va~a~--Gi~~~~~~ 237 (341)
T PRK08229 209 RSYRRCLALAQREALRVLKAA--GIRPARLT 237 (341)
T ss_pred chHHHHHHHHHHHHHHHHHHc--CCCccccC
Confidence 345568899999999999997 77766543
No 108
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=89.62 E-value=0.53 Score=48.32 Aligned_cols=118 Identities=18% Similarity=0.135 Sum_probs=71.7
Q ss_pred CeEEecCHHHHhccCCEEEEecChHH-HHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhC---Cce--
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQF-IVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLK---IKM-- 108 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~~-~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~---~~~-- 108 (492)
+..++++..++++++|+||+++|... ++++++.+.+++++++++|.++. +++ ..+-..+++.|. ..+
T Consensus 68 GA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~ST-IsP------~t~~~~~e~~l~~~r~d~~v 140 (341)
T TIGR01724 68 GVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCT-VSP------VVLYYSLEKILRLKRTDVGI 140 (341)
T ss_pred CCeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCC-CCH------HHHHHHHHHHhhcCccccCe
Confidence 46678889999999999999999874 78898889999988887775542 222 233344444332 112
Q ss_pred ------EEEeCcChHHHHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEc-CCcch
Q psy14065 109 ------TVLMGANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVV-DDVDA 160 (492)
Q Consensus 109 ------~vlsGPn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~-~D~~G 160 (492)
+|=.+|.+-.-+..+. +..-.+.-++|..+++-++-.+-.-.+|.- .|+++
T Consensus 141 ~s~HP~~vP~~~~~~~~~~~~~-~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~ 198 (341)
T TIGR01724 141 SSMHPAAVPGTPQHGHYVIGGK-PTAGKEMATEEQISKCVELAKSTGKKAYVVPADVTS 198 (341)
T ss_pred eccCCCCCCCCCCCceeeeccc-cccccccCCHHHHHHHHHHHHHhCCCeeecchhhcc
Confidence 2333344422222222 111122344677888888887766666644 35544
No 109
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.89 E-value=2.5 Score=43.62 Aligned_cols=142 Identities=14% Similarity=0.094 Sum_probs=88.1
Q ss_pred CCCCeEEecCHHHHhccCCEEEEecChH--HHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhC--Cc
Q psy14065 32 LPPNVVAVPDVVEAAKDADILVFVVPHQ--FIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLK--IK 107 (492)
Q Consensus 32 l~~~I~at~dl~~al~~aDiIilaVPs~--~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~--~~ 107 (492)
.+.+|+.++|+++++++||+|+-|||-. .=+.+++++.++.+++.+|-|-|-|+.+ ..+.+.+. .+
T Consensus 67 ~~~~i~~~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~----------s~la~~~~~p~R 136 (321)
T PRK07066 67 SPARLRFVATIEACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLP----------TDFYARATHPER 136 (321)
T ss_pred HHhhceecCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCH----------HHHHHhcCCccc
Confidence 3468899999999999999999999875 3456778888888888866555555554 44444443 12
Q ss_pred eE--EEeCcChHHHHhhcCCceEEEe-ecCcchHHHHHHHhcCCCceEEEc-CCcchhhhhhhhHHHHHHHHHHhhhcCC
Q psy14065 108 MT--VLMGANLAGEVAEEKFCETTIG-CKDKTLGPLLHALLQTPNFRVSVV-DDVDAVEICGALKNIVACGAGFVDGLGL 183 (492)
Q Consensus 108 ~~--vlsGPn~A~Ev~~~~pt~vvia-s~~~~~~~~v~~lf~~~~f~v~~~-~D~~GvEl~galKNv~AIa~Gi~~gl~~ 183 (492)
+. =...|-+..-+. .++-+ ..+++..+.+.+++..-...+... .|.-|-=.
T Consensus 137 ~~g~HffnP~~~~pLV-----EVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~-------------------- 191 (321)
T PRK07066 137 CVVGHPFNPVYLLPLV-----EVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIA-------------------- 191 (321)
T ss_pred EEEEecCCccccCceE-----EEeCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCccHHH--------------------
Confidence 22 223444422111 11112 234677778888887766677665 67776422
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHCCCCCcccc
Q psy14065 184 GDNTKAAVIRLGLMEMVKFTELFYPGAKSATF 215 (492)
Q Consensus 184 g~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~ 215 (492)
| -+..-.++|..++...= .++++.+
T Consensus 192 --N---Rl~~a~~~EA~~lv~eG--vas~edI 216 (321)
T PRK07066 192 --D---RLLEALWREALHLVNEG--VATTGEI 216 (321)
T ss_pred --H---HHHHHHHHHHHHHHHhC--CCCHHHH
Confidence 2 45666677777776543 3555544
No 110
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=88.06 E-value=0.51 Score=50.15 Aligned_cols=95 Identities=14% Similarity=0.050 Sum_probs=72.5
Q ss_pred chhhcCCCcHHHHhh----ccceEEEEeeCCCChHHHHHHHhCCCC-eEEEEcCCchhHhHhhhhHHHHHHHHHHhhhcC
Q psy14065 319 EAVLISSLTSSHVAE----EKFCETTIGCKDKTLGPLLHALLQTPN-FRVSVVDDVDAVEICGALKNIVACGAGFVDGLG 393 (492)
Q Consensus 319 ~~~l~gp~~a~ev~~----~~~~~~~ia~~~~~~~~~~~~~f~~~~-f~~~~~~D~~gve~~galKNv~Ai~~Gi~~g~~ 393 (492)
.-+.++|.++.+-.. ..|..++++ .|++..+.++++|+.-. .+++...|+...|++-.+.|.+
T Consensus 147 ~~v~~~Pe~~~~G~~~~~~~~~~~iv~G-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~----------- 214 (411)
T TIGR03026 147 FYLAYNPEFLREGNAVHDLLNPDRIVGG-ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTF----------- 214 (411)
T ss_pred ceEEECCCcCCCCChhhhhcCCCEEEEe-CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHH-----------
Confidence 357889988776443 356666666 57777888888887654 3677888999999999999888
Q ss_pred CCccHHHHHHHHhHHHHHHHHHHhCCCCCccccccccccc
Q psy14065 394 LGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVA 433 (492)
Q Consensus 394 ~g~N~~aal~~~g~~E~~~~~~~~~~g~~~~t~~~~~g~g 433 (492)
.+.....++|+.+|++.+ |.++.++++..+.+
T Consensus 215 ------~a~~ia~~nE~~~la~~~--GiD~~~v~~~~~~~ 246 (411)
T TIGR03026 215 ------RAVKIAFANELARICEAL--GIDVYEVIEAAGTD 246 (411)
T ss_pred ------HHHHHHHHHHHHHHHHHh--CCCHHHHHHHhCCC
Confidence 233445799999999998 99999888776655
No 111
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=87.75 E-value=0.19 Score=53.75 Aligned_cols=53 Identities=17% Similarity=0.056 Sum_probs=38.8
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCCeEEecCHHHHhccCCEEEEecChHHHHHHHHH
Q psy14065 13 LTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQ 67 (492)
Q Consensus 13 ~~~~in~~~~N~~ylp~i~l~~~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~ 67 (492)
..+.+.... .++++....+.+|++|+|+++++++||+||.++|+...+...+.
T Consensus 41 ~l~~~~~~~--~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ai~~~~~~~~~~d 93 (423)
T cd05297 41 RLETVEILA--KKIVEELGAPLKIEATTDRREALDGADFVINTIQVGGHEYTETD 93 (423)
T ss_pred HHHHHHHHH--HHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEeeEecCccchhhh
Confidence 344444322 34455555667899999999999999999999999887765553
No 112
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=87.64 E-value=2.3 Score=39.93 Aligned_cols=109 Identities=19% Similarity=0.198 Sum_probs=64.1
Q ss_pred CCCeEEecCHHHHhccCCEEEEecChH--HHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhC--Cce
Q psy14065 33 PPNVVAVPDVVEAAKDADILVFVVPHQ--FIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLK--IKM 108 (492)
Q Consensus 33 ~~~I~at~dl~~al~~aDiIilaVPs~--~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~--~~~ 108 (492)
..+|++++|++++. ++|+||=|+|-. .=++++.+|.++.+++.++.|-+-++.+ ..|.+.++ .++
T Consensus 64 ~~~i~~~~dl~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i----------~~la~~~~~p~R~ 132 (180)
T PF02737_consen 64 LARISFTTDLEEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSI----------SELAAALSRPERF 132 (180)
T ss_dssp HHTEEEESSGGGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-H----------HHHHTTSSTGGGE
T ss_pred hhhcccccCHHHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCH----------HHHHhccCcCceE
Confidence 35899999999877 999999999874 4568999999999999999898888886 34444443 122
Q ss_pred E--EEeCcChHHHHhhcCCceEEEe-ecCcchHHHHHHHhcCCCceEEEcCC
Q psy14065 109 T--VLMGANLAGEVAEEKFCETTIG-CKDKTLGPLLHALLQTPNFRVSVVDD 157 (492)
Q Consensus 109 ~--vlsGPn~A~Ev~~~~pt~vvia-s~~~~~~~~v~~lf~~~~f~v~~~~D 157 (492)
. =...|-+..-+ -.++-+ ..+++..+.+.+++..-...+....|
T Consensus 133 ig~Hf~~P~~~~~l-----VEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 133 IGMHFFNPPHLMPL-----VEVVPGPKTSPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp EEEEE-SSTTT--E-----EEEEE-TTS-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred EEEecccccccCce-----EEEeCCCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 1 12234432221 112222 23456667777777666666665554
No 113
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=85.24 E-value=1.1 Score=41.73 Aligned_cols=47 Identities=28% Similarity=0.535 Sum_probs=37.0
Q ss_pred cCHHHHhccCCEEEEecChHHHHHHH-HHhhccCCCCCeEEEEEcccee
Q psy14065 40 PDVVEAAKDADILVFVVPHQFIVRLC-SQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 40 ~dl~~al~~aDiIilaVPs~~~~~vl-~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
.+..|+++.||+|++.+|-....++. ++|.+++++++. +..+-|+.+
T Consensus 52 ~~~~eAv~~aDvV~~L~PD~~q~~vy~~~I~p~l~~G~~-L~fahGfni 99 (165)
T PF07991_consen 52 MSVAEAVKKADVVMLLLPDEVQPEVYEEEIAPNLKPGAT-LVFAHGFNI 99 (165)
T ss_dssp CEHHHHHHC-SEEEE-S-HHHHHHHHHHHHHHHS-TT-E-EEESSSHHH
T ss_pred ccHHHHHhhCCEEEEeCChHHHHHHHHHHHHhhCCCCCE-EEeCCcchh
Confidence 57889999999999999999999998 999999998875 567888876
No 114
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=84.67 E-value=7.2 Score=42.83 Aligned_cols=140 Identities=17% Similarity=0.122 Sum_probs=84.8
Q ss_pred CCeEEecCHHHHhccCCEEEEecChH--HHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCC--ce-
Q psy14065 34 PNVVAVPDVVEAAKDADILVFVVPHQ--FIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKI--KM- 108 (492)
Q Consensus 34 ~~I~at~dl~~al~~aDiIilaVPs~--~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~--~~- 108 (492)
.+++.++|+++ +.+||+||-|||.. .-+.++.++..+.+++.++.|-+-.+.+ ..+.+.+.. ++
T Consensus 73 ~~i~~~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i----------~~la~~~~~p~r~~ 141 (507)
T PRK08268 73 ARLRPVEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI----------TAIAAALKHPERVA 141 (507)
T ss_pred hCeEEeCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH----------HHHHhhcCCcccEE
Confidence 46899999976 67999999999874 3344556777777777776666666665 234444431 11
Q ss_pred -EEEeCcChHHHHhhcCCceEEEe--ecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCc
Q psy14065 109 -TVLMGANLAGEVAEEKFCETTIG--CKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGD 185 (492)
Q Consensus 109 -~vlsGPn~A~Ev~~~~pt~vvia--s~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~ 185 (492)
.-.-.|.... |-..++. ..+++..+.+..++..-.-.++...|..|. +=|
T Consensus 142 G~hff~Pa~v~------~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pGf-----i~N---------------- 194 (507)
T PRK08268 142 GLHFFNPVPLM------KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPGF-----IVN---------------- 194 (507)
T ss_pred EEeecCCcccC------eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCCh-----HHH----------------
Confidence 1112222211 2222233 245677788888887666566666777662 111
Q ss_pred ChHHHHHHHHHHHHHHHHHHHCCCCCcccccc
Q psy14065 186 NTKAAVIRLGLMEMVKFTELFYPGAKSATFFE 217 (492)
Q Consensus 186 N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~g 217 (492)
-++...++|..+|.+.- +.+++++..
T Consensus 195 ----rll~~~~~Ea~~l~~~g--~~~~~~iD~ 220 (507)
T PRK08268 195 ----RAARPYYTEALRVLEEG--VADPATIDA 220 (507)
T ss_pred ----HHHHHHHHHHHHHHHcC--CCCHHHHHH
Confidence 23334788888887766 677776553
No 115
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.99 E-value=7.8 Score=39.16 Aligned_cols=140 Identities=12% Similarity=0.058 Sum_probs=85.6
Q ss_pred CCCeEEecCHHHHhccCCEEEEecChH--HHHHHHHHhhccC-CCCCeEEEEEccceeccCCccccHHHHHHhHhC--Cc
Q psy14065 33 PPNVVAVPDVVEAAKDADILVFVVPHQ--FIVRLCSQLLGKI-KPDAVGLSLIKGFDRAEGGGIDLISHIITRNLK--IK 107 (492)
Q Consensus 33 ~~~I~at~dl~~al~~aDiIilaVPs~--~~~~vl~~l~~~l-~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~--~~ 107 (492)
..+++.++|+ ++++++|+||-|||-. .=+.++.++..+. +++.+++|-|-++.+ ..+.+.+. .+
T Consensus 70 ~~~l~~~~~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~----------~~la~~~~~~~r 138 (286)
T PRK07819 70 LARLRFTTDL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPI----------MKLAAATKRPGR 138 (286)
T ss_pred HhCeEeeCCH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCH----------HHHHhhcCCCcc
Confidence 3678999999 5589999999999875 3445667777777 778888887777765 34444333 12
Q ss_pred eE--EEeCcChHHHHhhcCCceEEEe-ecCcchHHHHHHHhc-CCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCC
Q psy14065 108 MT--VLMGANLAGEVAEEKFCETTIG-CKDKTLGPLLHALLQ-TPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGL 183 (492)
Q Consensus 108 ~~--vlsGPn~A~Ev~~~~pt~vvia-s~~~~~~~~v~~lf~-~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~ 183 (492)
+. -...|-...-. ..++.+ ..+++..+.+..++. .-...+....|..|-=.
T Consensus 139 ~~g~hf~~P~~~~~l-----vElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~-------------------- 193 (286)
T PRK07819 139 VLGLHFFNPVPVLPL-----VELVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSGFVV-------------------- 193 (286)
T ss_pred EEEEecCCCcccCce-----EEEeCCCCCCHHHHHHHHHHHHHhCCCCceEecCCCChHH--------------------
Confidence 21 22233221111 123333 556777777777755 34444555566655422
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHCCCCCcccc
Q psy14065 184 GDNTKAAVIRLGLMEMVKFTELFYPGAKSATF 215 (492)
Q Consensus 184 g~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~ 215 (492)
--++...++|..++.+.= -++++.+
T Consensus 194 -----nRi~~~~~~Ea~~ll~eG--v~~~~dI 218 (286)
T PRK07819 194 -----NALLVPYLLSAIRMVESG--FATAEDI 218 (286)
T ss_pred -----HHHHHHHHHHHHHHHHhC--CCCHHHH
Confidence 257788888988887642 2555543
No 116
>PRK06444 prephenate dehydrogenase; Provisional
Probab=83.87 E-value=1.3 Score=42.43 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=22.5
Q ss_pred hccCCEEEEecChHHHHHHHHHhhc
Q psy14065 46 AKDADILVFVVPHQFIVRLCSQLLG 70 (492)
Q Consensus 46 l~~aDiIilaVPs~~~~~vl~~l~~ 70 (492)
++++|+||+|+|.....++++++.+
T Consensus 29 ~~~~DlVilavPv~~~~~~i~~~~~ 53 (197)
T PRK06444 29 IKKADHAFLSVPIDAALNYIESYDN 53 (197)
T ss_pred ECCCCEEEEeCCHHHHHHHHHHhCC
Confidence 5899999999999999999998763
No 117
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=83.09 E-value=3.2 Score=41.78 Aligned_cols=85 Identities=16% Similarity=0.074 Sum_probs=65.4
Q ss_pred ceEEEEeeCC---CChHHHHHHHhCCCCeEEEEcCCchhHhHhhhhHHHHHHHHHHhhhcCCC----ccHHHHHHHHhHH
Q psy14065 336 FCETTIGCKD---KTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLG----DNTKAAVIRLGLM 408 (492)
Q Consensus 336 ~~~~~ia~~~---~~~~~~~~~~f~~~~f~~~~~~D~~gve~~galKNv~Ai~~Gi~~g~~~g----~N~~aal~~~g~~ 408 (492)
+..++++..+ .+..+.+.++|+...+.+..++|+...+|.=.+.|...-+.+.+-+..+| ++....++.+.++
T Consensus 142 ~~~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~ 221 (305)
T PRK12921 142 DHRLTFGEIPGQRSERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLR 221 (305)
T ss_pred CCcEEEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHH
Confidence 3345666533 23556889999999999999999999999999999665555555555543 5667789999999
Q ss_pred HHHHHHHHhCCCCC
Q psy14065 409 EMVKFTELFYPGAK 422 (492)
Q Consensus 409 E~~~~~~~~~~g~~ 422 (492)
|+.+++++. |.+
T Consensus 222 E~~~v~~a~--G~~ 233 (305)
T PRK12921 222 ECLAVARAE--GAP 233 (305)
T ss_pred HHHHHHHHc--CCC
Confidence 999999997 654
No 118
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=81.17 E-value=5.9 Score=39.37 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=52.2
Q ss_pred CeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEEEeCc
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGA 114 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~vlsGP 114 (492)
++..++|++++++++|+||.++||....+.+....+ .+.++|..+.|+... .. +.|.+. .....++..|
T Consensus 47 ~i~~~~dl~~ll~~~DvVid~t~p~~~~~~~~~al~---~G~~vvigttG~s~~---~~----~~l~~a-a~~~~v~~s~ 115 (257)
T PRK00048 47 GVAITDDLEAVLADADVLIDFTTPEATLENLEFALE---HGKPLVIGTTGFTEE---QL----AELEEA-AKKIPVVIAP 115 (257)
T ss_pred CccccCCHHHhccCCCEEEECCCHHHHHHHHHHHHH---cCCCEEEECCCCCHH---HH----HHHHHH-hcCCCEEEEC
Confidence 455778999988899999988898888776666544 466667678888851 11 233332 2445677778
Q ss_pred ChHHHHhh
Q psy14065 115 NLAGEVAE 122 (492)
Q Consensus 115 n~A~Ev~~ 122 (492)
||..-+.-
T Consensus 116 n~s~g~~~ 123 (257)
T PRK00048 116 NFSIGVNL 123 (257)
T ss_pred cchHHHHH
Confidence 88755544
No 119
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=79.70 E-value=2.8 Score=36.48 Aligned_cols=94 Identities=16% Similarity=0.194 Sum_probs=61.8
Q ss_pred hhcCCCcChHHHHHHHHHHHHHHHHHHHCCCCCccccccccccchhhhhccCCCCHHH---HH-HHHhCCCChHHHHHHh
Q psy14065 179 DGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKV---SE-AFVKTGKSIKDLEDEM 254 (492)
Q Consensus 179 ~gl~~g~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~glaGlGDl~~Tc~s~RN~~~---G~-~l~~~G~~~~~~~~~~ 254 (492)
..+++-.|...+....++.|...++++. |-++++++.. + .-.++.++-+ +. .+.+ +..-+
T Consensus 4 ~~~Kl~~N~l~~~~~~~~aEa~~la~~~--Gld~~~~~~v------l-~~~~~~s~~~~~~~~~~~~~-~~~~~------ 67 (122)
T PF14833_consen 4 QAMKLANNLLIAANMAALAEALALAEKA--GLDPEQLLDV------L-SAGSGGSWMLKNRAPRMILN-GDFDP------ 67 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT--TS-HHHHHHH------H-HTSTTHBHHHHHHHHHHHHT-TTTCS------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCHHHHHHH------H-ccCCcCchHHHhhhhhhhhc-ccCCc------
Confidence 3456778999999999999999999999 9999999872 1 1112244332 33 2443 22111
Q ss_pred cCCcee-ecchhHHHHHHHHHhcCCCCCCchhhhhHHhh
Q psy14065 255 LNGQKL-QGPFTADEVNYMLKNKNMENKFPLFTAVHKIC 292 (492)
Q Consensus 255 ~~g~~~-EG~~t~~~v~~l~~~~~l~~~~PI~~av~~Il 292 (492)
+..+ -..++++.+.+++++.++ ++|+...+.+++
T Consensus 68 --~f~l~~~~KDl~l~~~~a~~~g~--~~p~~~~~~~~~ 102 (122)
T PF14833_consen 68 --GFSLDLARKDLRLALDLAKEAGV--PLPLGSAARQLY 102 (122)
T ss_dssp --SSBHHHHHHHHHHHHHHHHHTT-----HHHHHHHHHH
T ss_pred --cchhHhhccHHHHHHHHHHHcCC--CCHHHHHHHHHH
Confidence 1111 236889999999999999 499999987774
No 120
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=78.14 E-value=1.9 Score=36.77 Aligned_cols=73 Identities=21% Similarity=0.153 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCCCC-CCCCCCCC--------CCCeEEecCHHHHhccCCEEEEecChHHHHH-HHHHhhccCCCCCeEEE
Q psy14065 11 KKLTEIINETHENV-KYLPGHKL--------PPNVVAVPDVVEAAKDADILVFVVPHQFIVR-LCSQLLGKIKPDAVGLS 80 (492)
Q Consensus 11 ~~~~~~in~~~~N~-~ylp~i~l--------~~~I~at~dl~~al~~aDiIilaVPs~~~~~-vl~~l~~~l~~~~~iIs 80 (492)
.++++.+.+.+... .|-|.+.. ..+++.++++.++++++|.||++++.+.++. -.+.+...+. +..+|.
T Consensus 20 ~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~~l~~~~~~~~~~-~~~~ii 98 (106)
T PF03720_consen 20 LELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDEFRELDWEEIAKLMR-KPPVII 98 (106)
T ss_dssp HHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GGGGCCGHHHHHHHSC-SSEEEE
T ss_pred HHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHHHhccCHHHHHHhcC-CCCEEE
Confidence 34666666654442 23344421 1468889999999999999999999998886 4666766664 334444
Q ss_pred EEcc
Q psy14065 81 LIKG 84 (492)
Q Consensus 81 ~~KG 84 (492)
=++|
T Consensus 99 D~~~ 102 (106)
T PF03720_consen 99 DGRN 102 (106)
T ss_dssp ESSS
T ss_pred ECcc
Confidence 4444
No 121
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=77.70 E-value=4.2 Score=41.57 Aligned_cols=61 Identities=10% Similarity=0.266 Sum_probs=43.6
Q ss_pred CCCeEEecCHHHHhccCCEEEEecCh----------------HHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccH
Q psy14065 33 PPNVVAVPDVVEAAKDADILVFVVPH----------------QFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLI 96 (492)
Q Consensus 33 ~~~I~at~dl~~al~~aDiIilaVPs----------------~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~ 96 (492)
+.+|++++|+++ +++||+||+++++ +.++++++++.++. ++..+|.++- -...+
T Consensus 55 ~~~i~~t~d~~~-~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tN--------P~di~ 124 (305)
T TIGR01763 55 DTKVTGTNNYAD-TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSN--------PLDAM 124 (305)
T ss_pred CcEEEecCCHHH-hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecC--------cHHHH
Confidence 357888999987 7999999999973 46778888888875 4566666652 23445
Q ss_pred HHHHHhH
Q psy14065 97 SHIITRN 103 (492)
Q Consensus 97 se~i~e~ 103 (492)
..++.+.
T Consensus 125 t~~~~~~ 131 (305)
T TIGR01763 125 TYVAWQK 131 (305)
T ss_pred HHHHHHH
Confidence 5555555
No 122
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=73.91 E-value=4 Score=35.32 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=32.3
Q ss_pred ccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccce
Q psy14065 47 KDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFD 86 (492)
Q Consensus 47 ~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~ 86 (492)
.++|+||+|+|+....+++..+.+.+.+++++|.++.=+.
T Consensus 64 ~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~~viD~s~~~~ 103 (122)
T smart00859 64 LAVDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLSSAFR 103 (122)
T ss_pred cCCCEEEEcCCcHHHHHHHHHHHhhhcCCCEEEECCcccc
Confidence 5899999999999999988877666777888887764444
No 123
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=72.57 E-value=9.2 Score=43.79 Aligned_cols=112 Identities=13% Similarity=0.024 Sum_probs=70.5
Q ss_pred CCCeEEecCHHHHhccCCEEEEecChH--HHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhC--Cce
Q psy14065 33 PPNVVAVPDVVEAAKDADILVFVVPHQ--FIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLK--IKM 108 (492)
Q Consensus 33 ~~~I~at~dl~~al~~aDiIilaVPs~--~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~--~~~ 108 (492)
..+|+.++|+ +++++||+||=|||-. .=++++.++.++.+++.++.|-|-++.+ ..|.+.+. .++
T Consensus 375 ~~~i~~~~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i----------~~la~~~~~p~r~ 443 (708)
T PRK11154 375 MALISGTTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPI----------GQIAAAAARPEQV 443 (708)
T ss_pred HhcEEEeCCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH----------HHHHHhcCcccce
Confidence 4689999999 4689999999999875 4568899999999999988888888776 33444333 122
Q ss_pred E--EEeCcChHHHHhhcCCceEEEe-ecCcchHHHHHHHhcCCCceEEEcCCcch
Q psy14065 109 T--VLMGANLAGEVAEEKFCETTIG-CKDKTLGPLLHALLQTPNFRVSVVDDVDA 160 (492)
Q Consensus 109 ~--vlsGPn~A~Ev~~~~pt~vvia-s~~~~~~~~v~~lf~~~~f~v~~~~D~~G 160 (492)
+ =...|-+..-+ ..++-+ ..+++....+.+++..-...+....|.-|
T Consensus 444 ig~Hff~P~~~~~l-----VEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pG 493 (708)
T PRK11154 444 IGLHYFSPVEKMPL-----VEVIPHAKTSAETIATTVALAKKQGKTPIVVRDGAG 493 (708)
T ss_pred EEEecCCccccCce-----EEEECCCCCCHHHHHHHHHHHHHcCCceEEEeccCc
Confidence 1 12233332111 112222 33456666666666655555555556543
No 124
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=71.41 E-value=15 Score=37.53 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=41.1
Q ss_pred CCeEEecCHHHHhcc--CCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEcccee
Q psy14065 34 PNVVAVPDVVEAAKD--ADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 34 ~~I~at~dl~~al~~--aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
.++.+..++.++-+. .|+.+++||++.+.+++++.... .=..+|.++-|+..
T Consensus 53 ~G~~~y~sv~dlp~~~~~DlAvI~vPa~~v~~al~e~~~~--Gvk~~vIisaGf~e 106 (300)
T PLN00125 53 LGLPVFNTVAEAKAETKANASVIYVPPPFAAAAILEAMEA--ELDLVVCITEGIPQ 106 (300)
T ss_pred cCeeccCCHHHHhhccCCCEEEEecCHHHHHHHHHHHHHc--CCCEEEEECCCCCc
Confidence 467888899887765 69999999999999999998762 12346778999964
No 125
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=71.16 E-value=7.8 Score=38.47 Aligned_cols=62 Identities=23% Similarity=0.294 Sum_probs=42.1
Q ss_pred CCCeEEecCHHHHhccCCEEEEecCh----------------HHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccH
Q psy14065 33 PPNVVAVPDVVEAAKDADILVFVVPH----------------QFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLI 96 (492)
Q Consensus 33 ~~~I~at~dl~~al~~aDiIilaVPs----------------~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~ 96 (492)
+.++++++|+.+++++||+||++.-. +.++++.+++.++- ++..+|.++ -| ...+
T Consensus 55 ~~~i~~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~t---NP-----~d~~ 125 (263)
T cd00650 55 DIKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVS---NP-----VDII 125 (263)
T ss_pred CcEEEECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec---Cc-----HHHH
Confidence 35788899988999999999996522 25677777777755 455555554 22 3445
Q ss_pred HHHHHhH
Q psy14065 97 SHIITRN 103 (492)
Q Consensus 97 se~i~e~ 103 (492)
..++.+.
T Consensus 126 t~~~~~~ 132 (263)
T cd00650 126 TYLVWRY 132 (263)
T ss_pred HHHHHHH
Confidence 5556555
No 126
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=71.03 E-value=4 Score=42.30 Aligned_cols=45 Identities=24% Similarity=0.181 Sum_probs=33.0
Q ss_pred CCeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEE
Q psy14065 34 PNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 34 ~~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~ 82 (492)
..+.+.+|.++++++||+|+-|+||.. .+++. +++++++.|.++.
T Consensus 181 ~~v~a~~s~~~av~~aDiIvt~T~s~~--Pil~~--~~l~~G~hI~aiG 225 (330)
T COG2423 181 EAVGAADSAEEAVEGADIVVTATPSTE--PVLKA--EWLKPGTHINAIG 225 (330)
T ss_pred ccceeccCHHHHhhcCCEEEEecCCCC--CeecH--hhcCCCcEEEecC
Confidence 368899999999999999999999987 22221 3466666654443
No 127
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=71.01 E-value=13 Score=42.64 Aligned_cols=113 Identities=13% Similarity=0.104 Sum_probs=72.9
Q ss_pred CCCeEEecCHHHHhccCCEEEEecChH--HHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCC--ce
Q psy14065 33 PPNVVAVPDVVEAAKDADILVFVVPHQ--FIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKI--KM 108 (492)
Q Consensus 33 ~~~I~at~dl~~al~~aDiIilaVPs~--~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~--~~ 108 (492)
..+|+.++|++ .+++||+||=|||-+ .=++++.++.++++++.++.|-|-++.+ ..|.+.+.. ++
T Consensus 378 ~~~i~~~~~~~-~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i----------~~la~~~~~p~r~ 446 (715)
T PRK11730 378 LSSIRPTLDYA-GFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISI----------SLLAKALKRPENF 446 (715)
T ss_pred HhCeEEeCCHH-HhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH----------HHHHhhcCCCccE
Confidence 46899999995 579999999999875 4568899999999888888777877776 344444431 22
Q ss_pred E--EEeCcChHHHHhhcCCceEEEe-ecCcchHHHHHHHhcCCCceEEEcCCcchh
Q psy14065 109 T--VLMGANLAGEVAEEKFCETTIG-CKDKTLGPLLHALLQTPNFRVSVVDDVDAV 161 (492)
Q Consensus 109 ~--vlsGPn~A~Ev~~~~pt~vvia-s~~~~~~~~v~~lf~~~~f~v~~~~D~~Gv 161 (492)
+ =...|-+..-+ ..++-+ ..+++....+.+++..-...+....|.-|-
T Consensus 447 ~g~Hff~P~~~~~l-----VEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGf 497 (715)
T PRK11730 447 CGMHFFNPVHRMPL-----VEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPGF 497 (715)
T ss_pred EEEecCCcccccce-----EEeeCCCCCCHHHHHHHHHHHHHhCCceEEecCcCch
Confidence 2 12233322111 112222 234666777777776666666666777654
No 128
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=70.90 E-value=13 Score=42.50 Aligned_cols=139 Identities=12% Similarity=0.024 Sum_probs=89.5
Q ss_pred CCCeEEecCHHHHhccCCEEEEecChH--HHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhC--Cce
Q psy14065 33 PPNVVAVPDVVEAAKDADILVFVVPHQ--FIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLK--IKM 108 (492)
Q Consensus 33 ~~~I~at~dl~~al~~aDiIilaVPs~--~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~--~~~ 108 (492)
..+|+.++|++ ++++||+||=|||-. .=++++.+|.++.+++.++.|-|-++.+ ..|.+.+. .++
T Consensus 370 ~~~i~~~~~~~-~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i----------~~la~~~~~p~r~ 438 (699)
T TIGR02440 370 MALITGTTDYR-GFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPI----------GQIAAAASRPENV 438 (699)
T ss_pred HcCeEEeCChH-HhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCH----------HHHHHhcCCcccE
Confidence 35799999995 689999999999886 3468899999999888888887877776 33444443 222
Q ss_pred E--EEeCcChHHHHhhcCCceEEEe-ecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCCCc
Q psy14065 109 T--VLMGANLAGEVAEEKFCETTIG-CKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGD 185 (492)
Q Consensus 109 ~--vlsGPn~A~Ev~~~~pt~vvia-s~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~g~ 185 (492)
+ =...|-+..-+ ..++-+ ..+++..+.+.+++..-...+....|.-|-=.
T Consensus 439 ~g~HffnP~~~~~l-----VEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pGfi~---------------------- 491 (699)
T TIGR02440 439 IGLHYFSPVEKMPL-----VEVIPHAGTSEQTIATTVALAKKQGKTPIVVADKAGFYV---------------------- 491 (699)
T ss_pred EEEecCCccccCce-----EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEccccchHH----------------------
Confidence 2 12234332111 112222 24467777777877777777777777665322
Q ss_pred ChHHHHHHHHHHHHHHHHHHHCCCCCcccc
Q psy14065 186 NTKAAVIRLGLMEMVKFTELFYPGAKSATF 215 (492)
Q Consensus 186 N~~aal~t~g~~Em~~l~~~~~~G~~~~t~ 215 (492)
.-++...++|..++.+ - |.+++.+
T Consensus 492 ---nRl~~~~~~Ea~~l~~-~--G~~~~dI 515 (699)
T TIGR02440 492 ---NRILAPYMNEAARLLL-E--GEPVEHI 515 (699)
T ss_pred ---HHHHHHHHHHHHHHHH-C--CCCHHHH
Confidence 2566777888877765 2 5555544
No 129
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=70.71 E-value=27 Score=37.10 Aligned_cols=118 Identities=17% Similarity=0.117 Sum_probs=74.2
Q ss_pred ecCHHHHhccCCEEEEecChHHHHHHHHHhhcc-CCCCCeEEEEEccceeccCCccccHHHHHHhHhC-CceEEEeC---
Q psy14065 39 VPDVVEAAKDADILVFVVPHQFIVRLCSQLLGK-IKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLK-IKMTVLMG--- 113 (492)
Q Consensus 39 t~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~-l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~-~~~~vlsG--- 113 (492)
..|.+++..+.|.+|+|||++...+||++|... +.+=..+|.++-.+ |+..++.+.+.+.-. .++...|-
T Consensus 74 ~~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtf-----GS~~lv~~~l~~~~~~~EVISFStY~g 148 (429)
T PF10100_consen 74 FQDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTF-----GSHLLVKGFLNDLGPDAEVISFSTYYG 148 (429)
T ss_pred hcCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECccc-----chHHHHHHHHHhcCCCceEEEeecccc
Confidence 478888889999999999999999999999764 33323444444333 455666666665442 22333221
Q ss_pred ---------cChHHHHhhcCCceEEEeecC--cchHHHHHHHhcCCCceEEEcCCcchhhh
Q psy14065 114 ---------ANLAGEVAEEKFCETTIGCKD--KTLGPLLHALLQTPNFRVSVVDDVDAVEI 163 (492)
Q Consensus 114 ---------Pn~A~Ev~~~~pt~vvias~~--~~~~~~v~~lf~~~~f~v~~~~D~~GvEl 163 (492)
|+.. +-.+.-..+-++|.. ......++.+|..-...+..-+.+.-+|.
T Consensus 149 dTr~~d~~~~~~v--lt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~ 207 (429)
T PF10100_consen 149 DTRWSDGEQPNRV--LTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAES 207 (429)
T ss_pred cceeccCCCccee--hhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhh
Confidence 2121 111222336677654 34567777888887777777777777775
No 130
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=70.12 E-value=18 Score=36.73 Aligned_cols=52 Identities=17% Similarity=0.207 Sum_probs=40.4
Q ss_pred CCeEEecCHHHHhcc--CCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEcccee
Q psy14065 34 PNVVAVPDVVEAAKD--ADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 34 ~~I~at~dl~~al~~--aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
.++.+..+++++-+. .|+.+++||++.+.+++++.... .-..+|.++-|+..
T Consensus 47 ~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~l~e~~~~--Gvk~avIis~Gf~e 100 (286)
T TIGR01019 47 LGLPVFDSVKEAVEETGANASVIFVPAPFAADAIFEAIDA--GIELIVCITEGIPV 100 (286)
T ss_pred cCeeccCCHHHHhhccCCCEEEEecCHHHHHHHHHHHHHC--CCCEEEEECCCCCH
Confidence 367788888887665 69999999999999999998762 12345668888863
No 131
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=69.85 E-value=12 Score=38.48 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=40.8
Q ss_pred CeEEecCHHHHhcc--CCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEcccee
Q psy14065 35 NVVAVPDVVEAAKD--ADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 35 ~I~at~dl~~al~~--aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
++.+..+++++.+. .|+.+++||++++.+++.+..+. .=..+|.++-|+-.
T Consensus 73 Gvpvy~sv~ea~~~~~~D~avI~VPa~~v~dai~Ea~~a--GI~~~ViiteGfpe 125 (317)
T PTZ00187 73 GLPVFATVKEAKKATGADASVIYVPPPHAASAIIEAIEA--EIPLVVCITEGIPQ 125 (317)
T ss_pred CccccCCHHHHhcccCCCEEEEecCHHHHHHHHHHHHHc--CCCEEEEECCCCch
Confidence 57778899998887 89999999999999988887652 12356778999865
No 132
>PLN03139 formate dehydrogenase; Provisional
Probab=69.54 E-value=6.6 Score=41.60 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=39.7
Q ss_pred CeEEecCHHHHhccCCEEEEecCh-HHHHHHH-HHhhccCCCCCeEEEEEcccee
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPH-QFIVRLC-SQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs-~~~~~vl-~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
++....++++++.+||+|++++|- +..+.++ +++...++++..+|+++.|=..
T Consensus 242 g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iV 296 (386)
T PLN03139 242 GAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIM 296 (386)
T ss_pred CceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchh
Confidence 345567999999999999999994 3344333 3455557789999999999665
No 133
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=68.67 E-value=14 Score=37.70 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=40.0
Q ss_pred CeEEecCHHHHhcc--CCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEcccee
Q psy14065 35 NVVAVPDVVEAAKD--ADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 35 ~I~at~dl~~al~~--aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
++.+..+++++-+. .|+.+++||++.+.+++++.... .-..+|.++-|+..
T Consensus 50 G~~~y~sv~dlp~~~~~DlAvi~vp~~~v~~~l~e~~~~--gvk~avI~s~Gf~~ 102 (291)
T PRK05678 50 GLPVFNTVAEAVEATGANASVIYVPPPFAADAILEAIDA--GIDLIVCITEGIPV 102 (291)
T ss_pred CeeccCCHHHHhhccCCCEEEEEcCHHHHHHHHHHHHHC--CCCEEEEECCCCCH
Confidence 57788899887666 89999999999999999998762 22345667888764
No 134
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=68.47 E-value=8.1 Score=39.67 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=37.0
Q ss_pred cCHHHHhccCCEEEEecCh-HHHHHHHH-HhhccCCCCCeEEEEEcccee
Q psy14065 40 PDVVEAAKDADILVFVVPH-QFIVRLCS-QLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 40 ~dl~~al~~aDiIilaVPs-~~~~~vl~-~l~~~l~~~~~iIs~~KGl~~ 87 (492)
.++++++++||+|++++|- +..+.++. +.-..++++.++|++++|=..
T Consensus 182 ~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vV 231 (312)
T PRK15469 182 EELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHV 231 (312)
T ss_pred ccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCcccc
Confidence 5789999999999999984 34444443 344457789999999999766
No 135
>PRK08618 ornithine cyclodeaminase; Validated
Probab=68.24 E-value=5.7 Score=40.89 Aligned_cols=42 Identities=26% Similarity=0.256 Sum_probs=30.9
Q ss_pred CeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEE
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSL 81 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~ 81 (492)
.+...+|++++++++|+|+.|+|+.. .++. .++++++.|+++
T Consensus 179 ~~~~~~~~~~~~~~aDiVi~aT~s~~--p~i~---~~l~~G~hV~~i 220 (325)
T PRK08618 179 EIYVVNSADEAIEEADIIVTVTNAKT--PVFS---EKLKKGVHINAV 220 (325)
T ss_pred cEEEeCCHHHHHhcCCEEEEccCCCC--cchH---HhcCCCcEEEec
Confidence 35567889999999999999999883 3443 446677765544
No 136
>PRK07574 formate dehydrogenase; Provisional
Probab=68.14 E-value=7.8 Score=41.04 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=39.4
Q ss_pred CeEEecCHHHHhccCCEEEEecCh-HHHHHHH-HHhhccCCCCCeEEEEEcccee
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPH-QFIVRLC-SQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs-~~~~~vl-~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
+++...+++++++.||+|++++|- +..+.++ ++....++++.++|++++|=..
T Consensus 235 g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iV 289 (385)
T PRK07574 235 GLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIV 289 (385)
T ss_pred CceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchh
Confidence 345557899999999999999983 3444443 3344557789999999999665
No 137
>PRK06223 malate dehydrogenase; Reviewed
Probab=68.03 E-value=9.8 Score=38.58 Aligned_cols=62 Identities=11% Similarity=0.251 Sum_probs=41.6
Q ss_pred CCeEEecCHHHHhccCCEEEEec--Ch--------------HHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHH
Q psy14065 34 PNVVAVPDVVEAAKDADILVFVV--PH--------------QFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLIS 97 (492)
Q Consensus 34 ~~I~at~dl~~al~~aDiIilaV--Ps--------------~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~s 97 (492)
.+|+.++|.+ ++++||+||+++ |. +.++++++++.++.+ +..+|.++ +....+.
T Consensus 57 ~~i~~~~d~~-~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~-~~~viv~t--------NP~d~~~ 126 (307)
T PRK06223 57 TKITGTNDYE-DIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAP-DAIVIVVT--------NPVDAMT 126 (307)
T ss_pred cEEEeCCCHH-HHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEec--------CcHHHHH
Confidence 4677788885 589999999986 33 468888888888764 45555554 2344455
Q ss_pred HHHHhHhC
Q psy14065 98 HIITRNLK 105 (492)
Q Consensus 98 e~i~e~l~ 105 (492)
.++.+..+
T Consensus 127 ~~~~~~s~ 134 (307)
T PRK06223 127 YVALKESG 134 (307)
T ss_pred HHHHHHhC
Confidence 55555443
No 138
>PRK13243 glyoxylate reductase; Reviewed
Probab=67.49 E-value=4.6 Score=41.79 Aligned_cols=48 Identities=19% Similarity=0.244 Sum_probs=37.3
Q ss_pred cCHHHHhccCCEEEEecChH-HHHHHH-HHhhccCCCCCeEEEEEcccee
Q psy14065 40 PDVVEAAKDADILVFVVPHQ-FIVRLC-SQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 40 ~dl~~al~~aDiIilaVPs~-~~~~vl-~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
.++++++++||+|++++|.. ..+.++ ++....++++.++|+++.|-..
T Consensus 196 ~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~v 245 (333)
T PRK13243 196 RPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVV 245 (333)
T ss_pred cCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhc
Confidence 57999999999999999853 333333 4555567889999999999665
No 139
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=67.37 E-value=14 Score=39.83 Aligned_cols=52 Identities=25% Similarity=0.390 Sum_probs=41.2
Q ss_pred CCeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEcccee
Q psy14065 34 PNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 34 ~~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
.++.+..++++.-+..|+++++||++.+.+++++.... .-+.+|.++.|+..
T Consensus 50 ~G~~~~~sl~~lp~~~Dlavi~vp~~~~~~~l~e~~~~--gv~~~vi~s~gf~e 101 (447)
T TIGR02717 50 LGVKAYPSVLEIPDPVDLAVIVVPAKYVPQVVEECGEK--GVKGAVVITAGFKE 101 (447)
T ss_pred CCccccCCHHHCCCCCCEEEEecCHHHHHHHHHHHHhc--CCCEEEEECCCccc
Confidence 35777788888667789999999999999999998773 22355678999864
No 140
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=66.32 E-value=27 Score=37.83 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=40.9
Q ss_pred cCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEcccee
Q psy14065 40 PDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 40 ~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
.++.++++.||+|++.+|-..-..+.+++.++++++.. +..+-|+.+
T Consensus 89 ~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~-L~fsHGFni 135 (487)
T PRK05225 89 GTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAA-LGYSHGFNI 135 (487)
T ss_pred CCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCE-EEecCCcee
Confidence 57899999999999999999888888999999987765 567888876
No 141
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=64.79 E-value=25 Score=35.06 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=30.1
Q ss_pred eEEecCHHHHhccCCEEEEecChHHHHHHHHHhhc
Q psy14065 36 VVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLG 70 (492)
Q Consensus 36 I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~ 70 (492)
....+|+++.+.++|+|++|+|++.+.+...++.+
T Consensus 49 ~~~~~~~~ell~~~DvVvi~a~~~~~~~~~~~al~ 83 (265)
T PRK13304 49 AKACLSIDELVEDVDLVVECASVNAVEEVVPKSLE 83 (265)
T ss_pred CeeECCHHHHhcCCCEEEEcCChHHHHHHHHHHHH
Confidence 45678899988999999999999999988887765
No 142
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=64.76 E-value=6.6 Score=43.27 Aligned_cols=53 Identities=23% Similarity=0.175 Sum_probs=39.4
Q ss_pred CeEEecCHHHHhccCCEEEEecChH-HHHHHH-HHhhccCCCCCeEEEEEcccee
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQ-FIVRLC-SQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~-~~~~vl-~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
.+...+++++++++||+|++++|-. ..+.++ ++....++++.++|++++|=..
T Consensus 180 g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~v 234 (525)
T TIGR01327 180 GVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGII 234 (525)
T ss_pred CCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCcee
Confidence 3455578999999999999999943 444444 2333357789999999999665
No 143
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=63.64 E-value=8.7 Score=34.75 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=28.4
Q ss_pred CHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEE
Q psy14065 41 DVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 41 dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~ 82 (492)
|+++++++||+|+.|+++..+ ++ .++++++.+++.+.
T Consensus 64 ~l~~~v~~ADIVvsAtg~~~~---i~--~~~ikpGa~Vidvg 100 (140)
T cd05212 64 QLQSKVHDADVVVVGSPKPEK---VP--TEWIKPGATVINCS 100 (140)
T ss_pred CHHHHHhhCCEEEEecCCCCc---cC--HHHcCCCCEEEEcC
Confidence 899999999999999988743 22 34577888887544
No 144
>PRK07589 ornithine cyclodeaminase; Validated
Probab=62.81 E-value=5.6 Score=41.47 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=29.4
Q ss_pred CeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEE
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGL 79 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iI 79 (492)
++.+.+|.++++++||+|+-|+||..-..+++. +++++++.|.
T Consensus 180 ~v~~~~~~~~av~~ADIIvtaT~S~~~~Pvl~~--~~lkpG~hV~ 222 (346)
T PRK07589 180 RIVACRSVAEAVEGADIITTVTADKTNATILTD--DMVEPGMHIN 222 (346)
T ss_pred cEEEeCCHHHHHhcCCEEEEecCCCCCCceecH--HHcCCCcEEE
Confidence 477789999999999999999987542112211 3456666543
No 145
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=61.55 E-value=21 Score=41.13 Aligned_cols=54 Identities=15% Similarity=0.168 Sum_probs=45.7
Q ss_pred CCCeEEecCHHHHhccCCEEEEecChH--HHHHHHHHhhccCCCCCeEEEEEcccee
Q psy14065 33 PPNVVAVPDVVEAAKDADILVFVVPHQ--FIVRLCSQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 33 ~~~I~at~dl~~al~~aDiIilaVPs~--~~~~vl~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
..+|+.++|++ ++++||+||=|||-. .=++++.++.++.+++.++.|-|-++.+
T Consensus 400 ~~~i~~~~~~~-~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i 455 (737)
T TIGR02441 400 LSNLTPTLDYS-GFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPI 455 (737)
T ss_pred HhCeEEeCCHH-HhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 35899999996 589999999999875 4568899999999989988888888776
No 146
>PRK06932 glycerate dehydrogenase; Provisional
Probab=61.33 E-value=7 Score=40.11 Aligned_cols=48 Identities=25% Similarity=0.252 Sum_probs=34.5
Q ss_pred cCHHHHhccCCEEEEecCh-HHHHHHH-HHhhccCCCCCeEEEEEcccee
Q psy14065 40 PDVVEAAKDADILVFVVPH-QFIVRLC-SQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 40 ~dl~~al~~aDiIilaVPs-~~~~~vl-~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
.+++++++.||+|++++|- +.-+.++ ++.-..++++.++|+++.|=..
T Consensus 189 ~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~V 238 (314)
T PRK06932 189 TPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLV 238 (314)
T ss_pred CCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCcccc
Confidence 5799999999999999993 3222111 2222336789999999999766
No 147
>PLN02928 oxidoreductase family protein
Probab=60.86 E-value=7.3 Score=40.61 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=35.2
Q ss_pred ecCHHHHhccCCEEEEecChH-HHHHHH-HHhhccCCCCCeEEEEEcccee
Q psy14065 39 VPDVVEAAKDADILVFVVPHQ-FIVRLC-SQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 39 t~dl~~al~~aDiIilaVPs~-~~~~vl-~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
..++++++.+||+|++++|-. .-+.++ ++.-..++++.++|+++.|=..
T Consensus 217 ~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lV 267 (347)
T PLN02928 217 HEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLL 267 (347)
T ss_pred ccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCcccc
Confidence 358999999999999999842 222222 2333346789999999999665
No 148
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=60.25 E-value=10 Score=38.10 Aligned_cols=89 Identities=9% Similarity=0.045 Sum_probs=53.0
Q ss_pred hhcCCCcHHHHhhccceEEEEeeCCCChHHHHHHHhCCCCeEEEEcCCchhHhHhhhhHHHHHHHHHHhhhcCCCccHHH
Q psy14065 321 VLISSLTSSHVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKA 400 (492)
Q Consensus 321 ~l~gp~~a~ev~~~~~~~~~ia~~~~~~~~~~~~~f~~~~f~~~~~~D~~gve~~galKNv~Ai~~Gi~~g~~~g~N~~a 400 (492)
.+..|.+..+......+...+.+-|++..+.++.+|+.=..+++...+. | -+.++ ++.+|...
T Consensus 114 ~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g~~-g--~a~~~--------------Kl~~n~~~ 176 (291)
T TIGR01505 114 YLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVGGN-G--DGQTC--------------KVANQIIV 176 (291)
T ss_pred EEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeCCC-C--HHHHH--------------HHHHHHHH
Confidence 3444555444433333323333345566667777776544444433321 1 12222 34468888
Q ss_pred HHHHHhHHHHHHHHHHhCCCCCcccccc
Q psy14065 401 AVIRLGLMEMVKFTELFYPGAKSATFFE 428 (492)
Q Consensus 401 al~~~g~~E~~~~~~~~~~g~~~~t~~~ 428 (492)
+....++.|+..+++.. |.++++++.
T Consensus 177 ~~~~~~~~Ea~~l~~~~--Gid~~~~~~ 202 (291)
T TIGR01505 177 ALNIEAVSEALVFASKA--GVDPVRVRQ 202 (291)
T ss_pred HHHHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 88899999999999997 889888863
No 149
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=59.70 E-value=30 Score=39.76 Aligned_cols=138 Identities=14% Similarity=0.078 Sum_probs=85.3
Q ss_pred CCCeEEecCHHHHhccCCEEEEecChH--HHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCC--ce
Q psy14065 33 PPNVVAVPDVVEAAKDADILVFVVPHQ--FIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKI--KM 108 (492)
Q Consensus 33 ~~~I~at~dl~~al~~aDiIilaVPs~--~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~--~~ 108 (492)
..+|+.++|++ ++++||+||=|||-+ .=++++.++.++.+++.++.|-|-++.+ ..|.+.+.. ++
T Consensus 378 ~~~i~~~~~~~-~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i----------~~ia~~~~~p~r~ 446 (714)
T TIGR02437 378 LNGITPTLSYA-GFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISI----------SLLAKALKRPENF 446 (714)
T ss_pred HhCeEEeCCHH-HhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH----------HHHHhhcCCcccE
Confidence 35799999995 579999999999875 4568899999999888888787877776 344444431 22
Q ss_pred E--EEeCcChH---HHHhhcCCceEEEeecCcchHHHHHHHhcCCCceEEEcCCcchhhhhhhhHHHHHHHHHHhhhcCC
Q psy14065 109 T--VLMGANLA---GEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGL 183 (492)
Q Consensus 109 ~--vlsGPn~A---~Ev~~~~pt~vvias~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~~gl~~ 183 (492)
. =.-.|-+. .||..+. ..+++....+.+++..-...+....|.-|-=.
T Consensus 447 ig~Hff~P~~~~~lvEvv~g~-------~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGfi~-------------------- 499 (714)
T TIGR02437 447 CGMHFFNPVHRMPLVEVIRGE-------KSSDETIATVVAYASKMGKTPIVVNDCPGFFV-------------------- 499 (714)
T ss_pred EEEecCCCcccCceEeecCCC-------CCCHHHHHHHHHHHHHcCCEEEEeCCcccchH--------------------
Confidence 1 11223322 1222222 23456666666766665556665566665321
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHCCCCCccccc
Q psy14065 184 GDNTKAAVIRLGLMEMVKFTELFYPGAKSATFF 216 (492)
Q Consensus 184 g~N~~aal~t~g~~Em~~l~~~~~~G~~~~t~~ 216 (492)
| -++...++|..++.. - |++++++-
T Consensus 500 --N---Rl~~~~~~ea~~l~~-e--G~~~~~ID 524 (714)
T TIGR02437 500 --N---RVLFPYFGGFSKLLR-D--GADFVRID 524 (714)
T ss_pred --H---HHHHHHHHHHHHHHH-C--CCCHHHHH
Confidence 2 455555677777754 2 56666543
No 150
>PRK06436 glycerate dehydrogenase; Provisional
Probab=59.06 E-value=11 Score=38.63 Aligned_cols=49 Identities=10% Similarity=0.120 Sum_probs=35.8
Q ss_pred ecCHHHHhccCCEEEEecChH-HHHHHH-HHhhccCCCCCeEEEEEcccee
Q psy14065 39 VPDVVEAAKDADILVFVVPHQ-FIVRLC-SQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 39 t~dl~~al~~aDiIilaVPs~-~~~~vl-~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
..++++++++||+|++++|-. ..+.++ ++.-..++++.++|+++.|=..
T Consensus 164 ~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~v 214 (303)
T PRK06436 164 YMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVV 214 (303)
T ss_pred cCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCcccc
Confidence 458999999999999999852 333332 2333346789999999999665
No 151
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.55 E-value=54 Score=34.06 Aligned_cols=115 Identities=19% Similarity=0.209 Sum_probs=68.9
Q ss_pred ecCHHHHhccCCEEEEecChHHHHHHHHHhhcc-CCC--CCeEEEEEccceeccCCccccHHHHHHhHhCCceEEEe---
Q psy14065 39 VPDVVEAAKDADILVFVVPHQFIVRLCSQLLGK-IKP--DAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLM--- 112 (492)
Q Consensus 39 t~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~-l~~--~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~vls--- 112 (492)
..|++++..+.+.+|+|||.+...+++++|--. ++. ..++||.+=| +..++++.+.+. +...-|+|
T Consensus 76 ~kd~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfG-------sn~lv~~~mnk~-~~daeViS~Ss 147 (431)
T COG4408 76 IKDLAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFG-------SNLLVQNLMNKA-GRDAEVISLSS 147 (431)
T ss_pred HhhHHHhhchhheEEEEeecHHHHHHHhcCCHhHhccccEEEEeccccc-------ccHHHHHHHhhh-CCCceEEEeeh
Confidence 478999999999999999999999999998543 332 3344444433 334455555443 22233333
Q ss_pred -----------CcChHHHHhhcCCceEEEee--cCcchHHHHHHHhcCCCceEEEcCCcchhhh
Q psy14065 113 -----------GANLAGEVAEEKFCETTIGC--KDKTLGPLLHALLQTPNFRVSVVDDVDAVEI 163 (492)
Q Consensus 113 -----------GPn~A~Ev~~~~pt~vvias--~~~~~~~~v~~lf~~~~f~v~~~~D~~GvEl 163 (492)
-||+|---+-.+- +-++| .|...++.+.++|......+..-+.+.-+|-
T Consensus 148 Y~~dTk~id~~~p~~alTkavKkr--iYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEt 209 (431)
T COG4408 148 YYADTKYIDAEQPNRALTKAVKKR--IYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAET 209 (431)
T ss_pred hcccceeecccCcchHHHHHHhHh--eeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhh
Confidence 3666554444332 44553 2345566677777666666655555555443
No 152
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=57.34 E-value=32 Score=28.57 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=29.2
Q ss_pred CeEEecCHHHHhcc--CCEEEEecChHHHHHHHHHhhc
Q psy14065 35 NVVAVPDVVEAAKD--ADILVFVVPHQFIVRLCSQLLG 70 (492)
Q Consensus 35 ~I~at~dl~~al~~--aDiIilaVPs~~~~~vl~~l~~ 70 (492)
++.+..+++++.+. .|+-+++||+...+++..++..
T Consensus 47 gipV~~~~~~l~~~~~i~iaii~VP~~~a~~~~~~~~~ 84 (96)
T PF02629_consen 47 GIPVYGSMDELEEFIEIDIAIITVPAEAAQEVADELVE 84 (96)
T ss_dssp TEEEESSHHHHHHHCTTSEEEEES-HHHHHHHHHHHHH
T ss_pred CEEeeccHHHhhhhhCCCEEEEEcCHHHHHHHHHHHHH
Confidence 57777777777666 9999999999999999988866
No 153
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=57.21 E-value=19 Score=31.29 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=33.2
Q ss_pred CCeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEcc
Q psy14065 34 PNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKG 84 (492)
Q Consensus 34 ~~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KG 84 (492)
.++.+..++++.-...|++++++|++...++++++... +..-+++..|
T Consensus 41 ~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~---g~~~v~~~~g 88 (116)
T PF13380_consen 41 LGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAAL---GVKAVWLQPG 88 (116)
T ss_dssp TTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHH---T-SEEEE-TT
T ss_pred CcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHc---CCCEEEEEcc
Confidence 46888899988338899999999999999999999874 2223556666
No 154
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=56.95 E-value=29 Score=37.46 Aligned_cols=28 Identities=25% Similarity=0.107 Sum_probs=23.8
Q ss_pred CCCeEEecCHHHHhccCCEEEEecChHH
Q psy14065 33 PPNVVAVPDVVEAAKDADILVFVVPHQF 60 (492)
Q Consensus 33 ~~~I~at~dl~~al~~aDiIilaVPs~~ 60 (492)
+-+|++|+|.++|+++||+||..+-.-.
T Consensus 59 ~~~v~~Ttdr~eAl~gADfVi~~irvGg 86 (437)
T cd05298 59 EIKFVYTTDPEEAFTDADFVFAQIRVGG 86 (437)
T ss_pred CeEEEEECCHHHHhCCCCEEEEEeeeCC
Confidence 3479999999999999999999885543
No 155
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=56.24 E-value=9 Score=39.26 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=34.0
Q ss_pred cCHHHHhccCCEEEEecChH-HHHH-HHHHhhccCCCCCeEEEEEcccee
Q psy14065 40 PDVVEAAKDADILVFVVPHQ-FIVR-LCSQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 40 ~dl~~al~~aDiIilaVPs~-~~~~-vl~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
.+++++++.||+|++++|-. .-+. +=++.-..++++.++|++++|=..
T Consensus 188 ~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vV 237 (311)
T PRK08410 188 VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIV 237 (311)
T ss_pred ecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCcccc
Confidence 48999999999999999842 1111 112222236789999999999665
No 156
>PLN02306 hydroxypyruvate reductase
Probab=56.21 E-value=11 Score=39.79 Aligned_cols=50 Identities=18% Similarity=0.180 Sum_probs=35.5
Q ss_pred EecCHHHHhccCCEEEEecCh-HHHHHHH-HHhhccCCCCCeEEEEEcccee
Q psy14065 38 AVPDVVEAAKDADILVFVVPH-QFIVRLC-SQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 38 at~dl~~al~~aDiIilaVPs-~~~~~vl-~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
...+++++++.||+|++++|- +.-+.++ ++.-..++++.++|++++|=..
T Consensus 226 ~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lV 277 (386)
T PLN02306 226 RASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVI 277 (386)
T ss_pred ccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCcccc
Confidence 346899999999999999984 2222221 2222346789999999999665
No 157
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=55.96 E-value=14 Score=37.38 Aligned_cols=45 Identities=24% Similarity=0.257 Sum_probs=38.5
Q ss_pred CeEEecCHHHHhccCCEEEEecChHH-HHHHHHHhhccCCCCCeEE
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQF-IVRLCSQLLGKIKPDAVGL 79 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~~-~~~vl~~l~~~l~~~~~iI 79 (492)
++++|+|-.||++++|++|+=+|==. -..+.+++.++++++.+|-
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~ 173 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVT 173 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEe
Confidence 78999999999999999999988644 3678999999999998654
No 158
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=55.65 E-value=14 Score=37.38 Aligned_cols=45 Identities=22% Similarity=0.292 Sum_probs=38.5
Q ss_pred CeEEecCHHHHhccCCEEEEecChHH-HHHHHHHhhccCCCCCeEE
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQF-IVRLCSQLLGKIKPDAVGL 79 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~~-~~~vl~~l~~~l~~~~~iI 79 (492)
++++|+|-.||++++|++|+=+|-=. -..+.+++.++++++.+|-
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~ 171 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVT 171 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEe
Confidence 78999999999999999999988644 3678999999999998654
No 159
>PTZ00117 malate dehydrogenase; Provisional
Probab=55.39 E-value=16 Score=37.53 Aligned_cols=48 Identities=15% Similarity=0.284 Sum_probs=33.8
Q ss_pred CCCeEEecCHHHHhccCCEEEEec--Ch--------------HHHHHHHHHhhccCCCCCeEEEEE
Q psy14065 33 PPNVVAVPDVVEAAKDADILVFVV--PH--------------QFIVRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 33 ~~~I~at~dl~~al~~aDiIilaV--Ps--------------~~~~~vl~~l~~~l~~~~~iIs~~ 82 (492)
+.+|+.++|++ ++++||+||++. |. +.++++.+++.++- ++..+|.++
T Consensus 59 ~~~i~~~~d~~-~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvs 122 (319)
T PTZ00117 59 NINILGTNNYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVT 122 (319)
T ss_pred CeEEEeCCCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 34677778987 789999999998 33 35677777777764 455455553
No 160
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=55.16 E-value=15 Score=39.22 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=38.4
Q ss_pred eEEecCHHHHhccCCEEEEecCh-HHHHHHH-HHhhccCCCCCeEEEEEcccee
Q psy14065 36 VVAVPDVVEAAKDADILVFVVPH-QFIVRLC-SQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 36 I~at~dl~~al~~aDiIilaVPs-~~~~~vl-~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
+....+++++++.||+|++.+|- +.-+.++ ++.-..++++..+|++++|=..
T Consensus 191 ~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~v 244 (409)
T PRK11790 191 ARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVV 244 (409)
T ss_pred ceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCccc
Confidence 44556899999999999999995 3333333 2333446789999999999665
No 161
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=54.88 E-value=20 Score=36.23 Aligned_cols=62 Identities=10% Similarity=0.206 Sum_probs=38.9
Q ss_pred CCeEEecCHHHHhccCCEEEEecCh----------------HHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHH
Q psy14065 34 PNVVAVPDVVEAAKDADILVFVVPH----------------QFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLIS 97 (492)
Q Consensus 34 ~~I~at~dl~~al~~aDiIilaVPs----------------~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~s 97 (492)
.+|+.++|.+ ++++||+||+++.+ +.++++++++.++.+ +..+|.++ - ....+.
T Consensus 53 ~~I~~t~d~~-~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p-~~~iIv~s---N-----P~di~t 122 (300)
T cd01339 53 TKVTGTNDYE-DIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAP-NAIVIVVT---N-----PLDVMT 122 (300)
T ss_pred eEEEEcCCHH-HhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEec---C-----cHHHHH
Confidence 4677788875 58999999998732 246677777777653 44444444 2 234445
Q ss_pred HHHHhHhC
Q psy14065 98 HIITRNLK 105 (492)
Q Consensus 98 e~i~e~l~ 105 (492)
..+.+..+
T Consensus 123 ~~~~~~s~ 130 (300)
T cd01339 123 YVAYKASG 130 (300)
T ss_pred HHHHHHhC
Confidence 55555543
No 162
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=53.57 E-value=61 Score=32.77 Aligned_cols=92 Identities=12% Similarity=0.073 Sum_probs=58.2
Q ss_pred ecCHHHHhcc-CC-EEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhC-CceEEEeCcC
Q psy14065 39 VPDVVEAAKD-AD-ILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLK-IKMTVLMGAN 115 (492)
Q Consensus 39 t~dl~~al~~-aD-iIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~-~~~~vlsGPn 115 (492)
++|+++.++. +| ++|==+.|..+.+.++.. +..+.++|..|.|++. +.+.+... ..+.++.-||
T Consensus 58 ~~~l~~~~~~~~d~VvIDFT~P~~~~~n~~~~---~~~gv~~ViGTTG~~~----------~~~~~l~~~~~i~~l~apN 124 (275)
T TIGR02130 58 EARIGEVFAKYPELICIDYTHPSAVNDNAAFY---GKHGIPFVMGTTGGDR----------EALAKLVADAKHPAVIAPN 124 (275)
T ss_pred cccHHHHHhhcCCEEEEECCChHHHHHHHHHH---HHCCCCEEEcCCCCCH----------HHHHHHHHhcCCCEEEECc
Confidence 6888888877 89 544444444444444443 4467888999999986 22222221 2478889999
Q ss_pred hHHHHhhcCCceEEEeecCcchHHHHHHHhcC--CCceEEE
Q psy14065 116 LAGEVAEEKFCETTIGCKDKTLGPLLHALLQT--PNFRVSV 154 (492)
Q Consensus 116 ~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~--~~f~v~~ 154 (492)
|+.-+.--+ ..++.+.+.|.. +.|.+.+
T Consensus 125 fSiGv~ll~-----------~~~~~aA~~~~~~f~~ydvEI 154 (275)
T TIGR02130 125 MAKQIVAFL-----------AAIEFLAEEFPGAFAGYKLEV 154 (275)
T ss_pred ccHHHHHHH-----------HHHHHHHHhhccccCCCCEEE
Confidence 998876543 566777777753 3344443
No 163
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=53.48 E-value=42 Score=33.65 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=60.3
Q ss_pred CeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEEEeCc
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGA 114 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~vlsGP 114 (492)
.+.+++|+..+..++|++|==+-|....+.++.... .+..+|.-|.|++. .....+.+..+ .+.++.-|
T Consensus 56 gv~v~~~~~~~~~~~DV~IDFT~P~~~~~~l~~~~~---~~~~lVIGTTGf~~---e~~~~l~~~a~-----~v~vv~a~ 124 (266)
T COG0289 56 GVPVTDDLLLVKADADVLIDFTTPEATLENLEFALE---HGKPLVIGTTGFTE---EQLEKLREAAE-----KVPVVIAP 124 (266)
T ss_pred CceeecchhhcccCCCEEEECCCchhhHHHHHHHHH---cCCCeEEECCCCCH---HHHHHHHHHHh-----hCCEEEec
Confidence 566788888888999999965555555555555433 45677899999996 23322322222 26677889
Q ss_pred ChHHHHhhcCCceEEEeecCcchHHHHHHHhc
Q psy14065 115 NLAGEVAEEKFCETTIGCKDKTLGPLLHALLQ 146 (492)
Q Consensus 115 n~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~ 146 (492)
||+.-+.--+ ..+++..++|.
T Consensus 125 NfSiGvnll~-----------~l~~~aak~l~ 145 (266)
T COG0289 125 NFSLGVNLLF-----------KLAEQAAKVLD 145 (266)
T ss_pred cchHHHHHHH-----------HHHHHHHHhcC
Confidence 9987765544 56777778886
No 164
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=53.37 E-value=11 Score=32.71 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=35.6
Q ss_pred CeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEcccee
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
++.+.+...+.+.++|++|+|+|+..-.++..++ ++++..+|..+.-+..
T Consensus 53 ~~~~~~~~~~~~~~~Dvvf~a~~~~~~~~~~~~~---~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 53 DLSVEDADPEELSDVDVVFLALPHGASKELAPKL---LKAGIKVIDLSGDFRL 102 (121)
T ss_dssp EEBEEETSGHHHTTESEEEE-SCHHHHHHHHHHH---HHTTSEEEESSSTTTT
T ss_pred ceeEeecchhHhhcCCEEEecCchhHHHHHHHHH---hhCCcEEEeCCHHHhC
Confidence 3555553334569999999999999999888887 3466777777766543
No 165
>PRK08291 ectoine utilization protein EutC; Validated
Probab=52.88 E-value=12 Score=38.46 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=21.5
Q ss_pred eEEecCHHHHhccCCEEEEecChH
Q psy14065 36 VVAVPDVVEAAKDADILVFVVPHQ 59 (492)
Q Consensus 36 I~at~dl~~al~~aDiIilaVPs~ 59 (492)
+...+|+++++.++|+|+.|+|++
T Consensus 185 v~~~~d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 185 VTVARDVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred EEEeCCHHHHHccCCEEEEeeCCC
Confidence 566789999999999999999985
No 166
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=52.77 E-value=13 Score=38.33 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=35.0
Q ss_pred cCHHHHhccCCEEEEecChH-HHHHHH-HHhhccCCCCCeEEEEEcccee
Q psy14065 40 PDVVEAAKDADILVFVVPHQ-FIVRLC-SQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 40 ~dl~~al~~aDiIilaVPs~-~~~~vl-~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
.++++++++||+|++++|-. .-+.++ .+.-..++++.++|++++|=..
T Consensus 192 ~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vV 241 (323)
T PRK15409 192 CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVV 241 (323)
T ss_pred cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCcccc
Confidence 48999999999999999842 322222 2233346789999999999665
No 167
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=52.63 E-value=23 Score=36.73 Aligned_cols=156 Identities=12% Similarity=0.142 Sum_probs=87.7
Q ss_pred CeEEecCHHHHhccCCEEEEecChHHHHHHH-HHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhC-C--ce--
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQFIVRLC-SQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLK-I--KM-- 108 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~~~~~vl-~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~-~--~~-- 108 (492)
+..+ .+++++++.||+|++.+|...-+.++ +++.+++++++ ++..+-|+.+. .. ++.| . .+
T Consensus 59 G~~v-~sl~Eaak~ADVV~llLPd~~t~~V~~~eil~~MK~Ga-iL~f~hgfni~----~~-------~i~pp~~vdv~m 125 (335)
T PRK13403 59 GFEV-MSVSEAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQ-MLLFSHGFNIH----FG-------QINPPSYVDVAM 125 (335)
T ss_pred CCEE-CCHHHHHhcCCEEEEeCCChHHHHHHHHHHHhcCCCCC-EEEECCCccee----cC-------ceeCCCCCeEEE
Confidence 3443 48999999999999999976667776 46888888766 46788898872 11 1122 1 22
Q ss_pred EEEeCcChHH--HH--hhcCCceEEEeecCc----chHHHHHHHhcCC-------CceEEEcCCcchhhh--hhhhHHHH
Q psy14065 109 TVLMGANLAG--EV--AEEKFCETTIGCKDK----TLGPLLHALLQTP-------NFRVSVVDDVDAVEI--CGALKNIV 171 (492)
Q Consensus 109 ~vlsGPn~A~--Ev--~~~~pt~vvias~~~----~~~~~v~~lf~~~-------~f~v~~~~D~~GvEl--~galKNv~ 171 (492)
++=-||-+.. +- ..|.|+.+.+--+-. +.+.....-..+. +|+=.+-+|+.|=|. ||.+--.+
T Consensus 126 vaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~~li 205 (335)
T PRK13403 126 VAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVTALV 205 (335)
T ss_pred ECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHHHHH
Confidence 3334666542 11 237776666542222 2233333333332 355556789998774 33332222
Q ss_pred HHHHHHhhhcCCCcChHHHHHHHHHHHHHHHHHHH
Q psy14065 172 ACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELF 206 (492)
Q Consensus 172 AIa~Gi~~gl~~g~N~~aal~t~g~~Em~~l~~~~ 206 (492)
=-+-=-+- ..|.....|++ -.+.||..+...+
T Consensus 206 ~~gfe~lv--eaGy~pe~Ayf-e~~he~kli~dli 237 (335)
T PRK13403 206 KAGFETLT--EGGYRPEIAYF-ECLHELKLIVDLM 237 (335)
T ss_pred HHHHHHHH--HcCCCHHHHHH-HHHHHHHHHHHHH
Confidence 11111111 24444444444 4588998777776
No 168
>PRK06487 glycerate dehydrogenase; Provisional
Probab=52.12 E-value=12 Score=38.50 Aligned_cols=48 Identities=21% Similarity=0.183 Sum_probs=34.4
Q ss_pred cCHHHHhccCCEEEEecChH-HHHHH-HHHhhccCCCCCeEEEEEcccee
Q psy14065 40 PDVVEAAKDADILVFVVPHQ-FIVRL-CSQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 40 ~dl~~al~~aDiIilaVPs~-~~~~v-l~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
.+++++++.||+|++++|-. .-+.+ =++.-..++++.++|++++|=..
T Consensus 189 ~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vV 238 (317)
T PRK06487 189 LPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLV 238 (317)
T ss_pred cCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCcccc
Confidence 47999999999999999942 22211 12222336789999999999765
No 169
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=51.97 E-value=14 Score=35.84 Aligned_cols=49 Identities=12% Similarity=0.035 Sum_probs=38.6
Q ss_pred hhhcCCCcHHHHhhccceEEEEeeCCCChHHHHHHHhCCCCeEEEEcCC
Q psy14065 320 AVLISSLTSSHVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDD 368 (492)
Q Consensus 320 ~~l~gp~~a~ev~~~~~~~~~ia~~~~~~~~~~~~~f~~~~f~~~~~~D 368 (492)
++.++||++.++..+.|+.....+.|.+..+.++++|+.=--.++..++
T Consensus 117 v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~e~ 165 (245)
T PRK07634 117 VAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQLCTEE 165 (245)
T ss_pred EEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCEEEECHH
Confidence 5689999999999999888777777778888999999875544444443
No 170
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=51.22 E-value=27 Score=29.87 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=37.2
Q ss_pred CeEEecCHHHHhc--cCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccce
Q psy14065 35 NVVAVPDVVEAAK--DADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFD 86 (492)
Q Consensus 35 ~I~at~dl~~al~--~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~ 86 (492)
+...++|+++.++ +.|+||=|.+++.+.+.+.+. +..+..+|++.||-.
T Consensus 44 ~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~---L~~G~~VVt~nk~al 94 (117)
T PF03447_consen 44 DEAFTTDLEELIDDPDIDVVVECTSSEAVAEYYEKA---LERGKHVVTANKGAL 94 (117)
T ss_dssp HSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHH---HHTTCEEEES-HHHH
T ss_pred cccccCCHHHHhcCcCCCEEEECCCchHHHHHHHHH---HHCCCeEEEECHHHh
Confidence 4567899999998 899999999998887766654 446788999999965
No 171
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=50.51 E-value=16 Score=38.60 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=34.3
Q ss_pred cCHHHHhccCCEEEEecChHH------HHHHHHHhhccCCCCCeEEEEEcccee
Q psy14065 40 PDVVEAAKDADILVFVVPHQF------IVRLCSQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 40 ~dl~~al~~aDiIilaVPs~~------~~~vl~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
.++++++++||+|++.+|-.. ..-+=++.-..++++.++|++++|=..
T Consensus 159 ~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vV 212 (378)
T PRK15438 159 RSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVV 212 (378)
T ss_pred CCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhc
Confidence 589999999999999998311 111112333446789999999999665
No 172
>PLN00135 malate dehydrogenase
Probab=50.39 E-value=57 Score=33.49 Aligned_cols=63 Identities=29% Similarity=0.269 Sum_probs=42.0
Q ss_pred CeEEecCHHHHhccCCEEEEecCh----------------HHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHH
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPH----------------QFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISH 98 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs----------------~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se 98 (492)
.+++++|.-+.+++||+||++--. +.++++.++|+++..++.++|.++ -| ...+..
T Consensus 45 ~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivvs---NP-----vDv~t~ 116 (309)
T PLN00135 45 GVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVA---NP-----ANTNAL 116 (309)
T ss_pred CcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeC---Cc-----HHHHHH
Confidence 566667755679999999997622 147788888887655667666666 22 445555
Q ss_pred HHHhHhC
Q psy14065 99 IITRNLK 105 (492)
Q Consensus 99 ~i~e~l~ 105 (492)
++.+..+
T Consensus 117 ~~~~~sg 123 (309)
T PLN00135 117 ILKEFAP 123 (309)
T ss_pred HHHHHcC
Confidence 5666554
No 173
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=50.27 E-value=12 Score=35.47 Aligned_cols=30 Identities=23% Similarity=0.134 Sum_probs=22.6
Q ss_pred CCCeEEecCHHHHhccCCEEEEecChHHHH
Q psy14065 33 PPNVVAVPDVVEAAKDADILVFVVPHQFIV 62 (492)
Q Consensus 33 ~~~I~at~dl~~al~~aDiIilaVPs~~~~ 62 (492)
+-++..|+|.++|+++||+||..+-.-..+
T Consensus 58 ~~~v~~ttd~~eAl~gADfVi~~irvGg~~ 87 (183)
T PF02056_consen 58 DLKVEATTDRREALEGADFVINQIRVGGLE 87 (183)
T ss_dssp SSEEEEESSHHHHHTTESEEEE---TTHHH
T ss_pred CeEEEEeCCHHHHhCCCCEEEEEeeecchH
Confidence 346899999999999999999988664444
No 174
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=50.17 E-value=16 Score=40.32 Aligned_cols=52 Identities=23% Similarity=0.194 Sum_probs=39.5
Q ss_pred CeEEecCHHHHhccCCEEEEecChH-HHHHHH-HHhhccCCCCCeEEEEEcccee
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQ-FIVRLC-SQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~-~~~~vl-~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
++... ++++++++||+|++++|.. ..+.++ .+....++++..+|++++|=..
T Consensus 182 g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~v 235 (526)
T PRK13581 182 GVELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGII 235 (526)
T ss_pred CCEEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCcee
Confidence 34444 8999999999999999963 444444 3455557789999999999665
No 175
>PLN02775 Probable dihydrodipicolinate reductase
Probab=49.37 E-value=97 Score=31.52 Aligned_cols=96 Identities=9% Similarity=0.097 Sum_probs=61.1
Q ss_pred CeEEe--cCHHHHhc-----cCCEEEE-ecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhC-
Q psy14065 35 NVVAV--PDVVEAAK-----DADILVF-VVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLK- 105 (492)
Q Consensus 35 ~I~at--~dl~~al~-----~aDiIil-aVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~- 105 (492)
.+... +|+++++. .+|.|++ =+.|..+.+.++.. +..+.++|..|.|++. +.+++...
T Consensus 59 ~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~---~~~g~~~VvGTTG~~~----------e~l~~~~~~ 125 (286)
T PLN02775 59 EVRLVGPSEREAVLSSVKAEYPNLIVVDYTLPDAVNDNAELY---CKNGLPFVMGTTGGDR----------DRLLKDVEE 125 (286)
T ss_pred eeeeecCccHHHHHHHhhccCCCEEEEECCChHHHHHHHHHH---HHCCCCEEEECCCCCH----------HHHHHHHhc
Confidence 55666 89998882 4784443 33444444455544 3357788999999986 23333332
Q ss_pred CceEEEeCcChHHHHhhcCCceEEEeecCcchHHHHHHHhcC--CCceEEE
Q psy14065 106 IKMTVLMGANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQT--PNFRVSV 154 (492)
Q Consensus 106 ~~~~vlsGPn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~~--~~f~v~~ 154 (492)
..+.++.-|||+.-+.--+ ..++...+.|.. +.|.+.+
T Consensus 126 ~~i~vv~apNfSiGv~ll~-----------~l~~~aA~~l~~~f~~yDiEI 165 (286)
T PLN02775 126 SGVYAVIAPQMGKQVVAFQ-----------AAMEIMAEQFPGAFSGYTLEV 165 (286)
T ss_pred CCccEEEECcccHHHHHHH-----------HHHHHHHHhcccccCCCCEEE
Confidence 3578889999998776654 566777777764 4454443
No 176
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=48.95 E-value=5.7 Score=37.02 Aligned_cols=46 Identities=26% Similarity=0.340 Sum_probs=32.4
Q ss_pred EecCHHHHhccCCEEEEecChH-----HH-HHHHHHhhccCCCCCeEEEEEcccee
Q psy14065 38 AVPDVVEAAKDADILVFVVPHQ-----FI-VRLCSQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 38 at~dl~~al~~aDiIilaVPs~-----~~-~~vl~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
-..+++++++.||+|++++|.. .+ ++.++ .++++.++|++++|=..
T Consensus 81 ~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~----~mk~ga~lvN~aRG~~v 132 (178)
T PF02826_consen 81 EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLA----KMKPGAVLVNVARGELV 132 (178)
T ss_dssp EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHH----TSTTTEEEEESSSGGGB
T ss_pred eeeehhhhcchhhhhhhhhccccccceeeeeeeee----ccccceEEEeccchhhh
Confidence 3469999999999999999942 11 22333 36689999999999655
No 177
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=48.54 E-value=32 Score=35.34 Aligned_cols=53 Identities=25% Similarity=0.320 Sum_probs=44.8
Q ss_pred CCeEEecCHHHHhccCCEEEEecChH--HHHHHHHHhhccCCCCCeEEEEEcccee
Q psy14065 34 PNVVAVPDVVEAAKDADILVFVVPHQ--FIVRLCSQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 34 ~~I~at~dl~~al~~aDiIilaVPs~--~~~~vl~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
.+|+.++|+. ++++||+||=|||-. -=+++++++-.+.+++.++-|=|-++.+
T Consensus 69 ~~i~~~~~~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~i 123 (307)
T COG1250 69 ARITPTTDLA-ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSI 123 (307)
T ss_pred hhccccCchh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCH
Confidence 5788899987 689999999999885 4567888888888888988888888886
No 178
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=48.14 E-value=30 Score=37.16 Aligned_cols=27 Identities=19% Similarity=0.058 Sum_probs=23.2
Q ss_pred CCeEEecCHHHHhccCCEEEEecChHH
Q psy14065 34 PNVVAVPDVVEAAKDADILVFVVPHQF 60 (492)
Q Consensus 34 ~~I~at~dl~~al~~aDiIilaVPs~~ 60 (492)
-.+..|+|.++|+++||+||..+-.-.
T Consensus 60 ~~v~~ttD~~~Al~gADfVi~~irvGg 86 (425)
T cd05197 60 IKFEKTMDLEDAIIDADFVINQFRVGG 86 (425)
T ss_pred eEEEEeCCHHHHhCCCCEEEEeeecCC
Confidence 368999999999999999999885543
No 179
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=45.83 E-value=31 Score=29.15 Aligned_cols=48 Identities=15% Similarity=0.206 Sum_probs=35.1
Q ss_pred CeEEecCHHHHhc--cCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccce
Q psy14065 35 NVVAVPDVVEAAK--DADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFD 86 (492)
Q Consensus 35 ~I~at~dl~~al~--~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~ 86 (492)
++...+|+++.++ +.|+|++++|+..-.+.+.+..+. +.. |.+-|=+.
T Consensus 47 ~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~---g~~-v~~EKP~~ 96 (120)
T PF01408_consen 47 GIPVYTDLEELLADEDVDAVIIATPPSSHAEIAKKALEA---GKH-VLVEKPLA 96 (120)
T ss_dssp TSEEESSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHT---TSE-EEEESSSS
T ss_pred cccchhHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHc---CCE-EEEEcCCc
Confidence 3457889999987 689999999999888777776653 223 44666443
No 180
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=45.64 E-value=71 Score=36.37 Aligned_cols=96 Identities=7% Similarity=-0.027 Sum_probs=59.1
Q ss_pred EEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCC---------ce--EEEeCcChHH-H
Q psy14065 52 LVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKI---------KM--TVLMGANLAG-E 119 (492)
Q Consensus 52 IilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~---------~~--~vlsGPn~A~-E 119 (492)
||+|+|...+.+++++++++++++++|.=++ ++...+-+.+.+.++. +. .=.+||..|. +
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~--------SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~ 72 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAG--------STKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALAD 72 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecC--------cccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChh
Confidence 6899999999999999999998776553221 2222333555555431 11 1224444443 5
Q ss_pred HhhcCCceEEEe-ecCcchHHHHHHHhcCCCceEEEc
Q psy14065 120 VAEEKFCETTIG-CKDKTLGPLLHALLQTPNFRVSVV 155 (492)
Q Consensus 120 v~~~~pt~vvia-s~~~~~~~~v~~lf~~~~f~v~~~ 155 (492)
+.++.+..+|-. ..+.+..+.+++++..-.-++...
T Consensus 73 Lf~~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~ 109 (673)
T PRK11861 73 LYVGRNVVLCALPENAPDALARVEAMWRAARADVRAM 109 (673)
T ss_pred HhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 566775444433 234566788889988777666554
No 181
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=44.72 E-value=36 Score=34.09 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=31.8
Q ss_pred EEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEE
Q psy14065 37 VAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSL 81 (492)
Q Consensus 37 ~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~ 81 (492)
...+|+++.++++|+|++|+|+....++..+... .+..++..
T Consensus 56 ~~~~~~eell~~~D~Vvi~tp~~~h~e~~~~aL~---aGk~Vi~~ 97 (271)
T PRK13302 56 PPVVPLDQLATHADIVVEAAPASVLRAIVEPVLA---AGKKAIVL 97 (271)
T ss_pred cccCCHHHHhcCCCEEEECCCcHHHHHHHHHHHH---cCCcEEEe
Confidence 3467888888999999999999998888776643 44444543
No 182
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=43.64 E-value=22 Score=36.23 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=23.0
Q ss_pred CeEEecCHHHHhccCCEEEEecChHH
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQF 60 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~~ 60 (492)
.+.+.++.++++.+||+|+-|+||..
T Consensus 169 ~v~~~~~~~eav~~aDIV~taT~s~~ 194 (301)
T PRK06407 169 DIRPVDNAEAALRDADTITSITNSDT 194 (301)
T ss_pred cEEEeCCHHHHHhcCCEEEEecCCCC
Confidence 57778999999999999999999863
No 183
>PRK07340 ornithine cyclodeaminase; Validated
Probab=43.17 E-value=23 Score=36.11 Aligned_cols=38 Identities=8% Similarity=0.114 Sum_probs=26.8
Q ss_pred ecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEE
Q psy14065 39 VPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSL 81 (492)
Q Consensus 39 t~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~ 81 (492)
..|++++++++|+|+.|+||.. .+++. .+++++.|.++
T Consensus 179 ~~~~~~av~~aDiVitaT~s~~--Pl~~~---~~~~g~hi~~i 216 (304)
T PRK07340 179 PLDGEAIPEAVDLVVTATTSRT--PVYPE---AARAGRLVVAV 216 (304)
T ss_pred ECCHHHHhhcCCEEEEccCCCC--ceeCc---cCCCCCEEEec
Confidence 5788899999999999999974 23322 35566654433
No 184
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=43.11 E-value=40 Score=34.58 Aligned_cols=148 Identities=18% Similarity=0.175 Sum_probs=92.3
Q ss_pred ecCHHHHhccCCEEEEecChHHHHHHHH-HhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCc----eEEEeC
Q psy14065 39 VPDVVEAAKDADILVFVVPHQFIVRLCS-QLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIK----MTVLMG 113 (492)
Q Consensus 39 t~dl~~al~~aDiIilaVPs~~~~~vl~-~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~----~~vlsG 113 (492)
.-+.++|++.||+|++-+|-..-.++.+ +|.|.+++++ .+..+-|+.+.-. .-..|.. .++=-|
T Consensus 65 V~~v~ea~k~ADvim~L~PDe~q~~vy~~~I~p~Lk~G~-aL~FaHGfNihf~----------~i~ppkdvdV~MVAPKg 133 (338)
T COG0059 65 VYTVEEAAKRADVVMILLPDEQQKEVYEKEIAPNLKEGA-ALGFAHGFNIHFG----------LIVPPKDVDVIMVAPKG 133 (338)
T ss_pred eecHHHHhhcCCEEEEeCchhhHHHHHHHHhhhhhcCCc-eEEeccccceecc----------eecCCccCcEEEEcCCC
Confidence 4567899999999999999999999999 9999998777 4678889887310 0011111 233356
Q ss_pred cChHHH--H--hhcCCceEEEeecCc----chHHHHHHHhcC-------CCceEEEcCCcchhhhhhhhHHHHHHHHHHh
Q psy14065 114 ANLAGE--V--AEEKFCETTIGCKDK----TLGPLLHALLQT-------PNFRVSVVDDVDAVEICGALKNIVACGAGFV 178 (492)
Q Consensus 114 Pn~A~E--v--~~~~pt~vvias~~~----~~~~~v~~lf~~-------~~f~v~~~~D~~GvEl~galKNv~AIa~Gi~ 178 (492)
|-+..- - ..|.|+-+.+--+-. +.+....+-... .+|+-.+-+|+.|=|. +-||.+
T Consensus 134 PG~~VR~~y~~G~GvP~LiAV~qD~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~---------vLcGgl 204 (338)
T COG0059 134 PGHLVRREYKEGFGVPALIAVHQDASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQA---------VLCGGL 204 (338)
T ss_pred CcHHHHHHHHccCCceeEEEEEeCCCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchh---------hhhhHH
Confidence 666421 1 227776665542222 223333333321 2366667899999885 356655
Q ss_pred hhc---------CCCcChHHHHHHHHHHHHHHHHHHHC
Q psy14065 179 DGL---------GLGDNTKAAVIRLGLMEMVKFTELFY 207 (492)
Q Consensus 179 ~gl---------~~g~N~~aal~t~g~~Em~~l~~~~~ 207 (492)
.++ ..|...-.|++ -.+.|+..+...++
T Consensus 205 ~~li~agfetLvEaGy~PE~Ayf-E~lhE~klIvdLiy 241 (338)
T COG0059 205 QALIKAGFETLVEAGYQPELAYF-ECLHELKLIVDLIY 241 (338)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHH
Confidence 555 35665555554 34668888887773
No 185
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=42.07 E-value=21 Score=37.10 Aligned_cols=88 Identities=14% Similarity=0.029 Sum_probs=61.4
Q ss_pred cchhhcCCCcHHHHhhccceEEEEeeCCCChHHHHHHHhCCCCeEEEEcCCchhHhHhhhhHHHHHHHHHHhhhcCCCcc
Q psy14065 318 KEAVLISSLTSSHVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDN 397 (492)
Q Consensus 318 ~~~~l~gp~~a~ev~~~~~~~~~ia~~~~~~~~~~~~~f~~~~f~~~~~~D~~gve~~galKNv~Ai~~Gi~~g~~~g~N 397 (492)
+..+.++|..+.+|..+.++..+.++. .+..++++.+|+.-..++++.+. +.+.+.|=+ .|
T Consensus 145 p~~v~Gae~g~l~Vm~gg~t~~~~~~~-~e~~e~v~~LL~a~G~~v~~~~~----g~~~~vk~~--------------~n 205 (342)
T PRK12557 145 PAAVPGTPQHGHYVIAGKTTNGTELAT-EEQIEKCVELAESIGKEPYVVPA----DVVSAVADM--------------GS 205 (342)
T ss_pred CccccccccchheEEeCCCcccccCCC-HHHHHHHHHHHHHcCCEEEEeCH----HHHHHHHHH--------------HH
Confidence 445788899999999999886666664 44457899999999998977772 345555532 45
Q ss_pred HHHHHHHHhHHHHHHHHHHhCCCCCcccc
Q psy14065 398 TKAAVIRLGLMEMVKFTELFYPGAKSATF 426 (492)
Q Consensus 398 ~~aal~~~g~~E~~~~~~~~~~g~~~~t~ 426 (492)
...++...|+.|...+++++ +.+|..+
T Consensus 206 ~l~av~~a~~aE~~~l~~~~--~~~p~~~ 232 (342)
T PRK12557 206 LVTAVALSGVLDYYSVGTKI--IKAPKEM 232 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHh--CCCHHHH
Confidence 56666667777777777666 5554443
No 186
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=41.53 E-value=19 Score=38.11 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=34.4
Q ss_pred cCHHHHhccCCEEEEecChHH-----HHH-HHHHhhccCCCCCeEEEEEcccee
Q psy14065 40 PDVVEAAKDADILVFVVPHQF-----IVR-LCSQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 40 ~dl~~al~~aDiIilaVPs~~-----~~~-vl~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
.++++++++||+|++.+|-.. -+. +=++.-..++++.++|+++.|=..
T Consensus 159 ~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vV 212 (381)
T PRK00257 159 VSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVV 212 (381)
T ss_pred cCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCccc
Confidence 579999999999999998421 111 112333447789999999999665
No 187
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=41.29 E-value=43 Score=34.50 Aligned_cols=22 Identities=9% Similarity=0.291 Sum_probs=18.5
Q ss_pred CCeEEecCHHHHhccCCEEEEec
Q psy14065 34 PNVVAVPDVVEAAKDADILVFVV 56 (492)
Q Consensus 34 ~~I~at~dl~~al~~aDiIilaV 56 (492)
.+|+.++|++ ++++||+||++.
T Consensus 61 ~~I~~~~d~~-~l~~aDiVI~ta 82 (321)
T PTZ00082 61 SKVIGTNNYE-DIAGSDVVIVTA 82 (321)
T ss_pred eEEEECCCHH-HhCCCCEEEECC
Confidence 4688888985 689999999966
No 188
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.94 E-value=19 Score=36.60 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=30.3
Q ss_pred ecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEE
Q psy14065 39 VPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 39 t~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~ 82 (492)
|.|+.+.+++||+||.|+|...+ +.. .++++++++|.+.
T Consensus 192 t~~l~~~~~~ADIVV~avG~~~~---i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 192 TRDLAAHTRQADIVVAAVGKRNV---LTA--DMVKPGATVIDVG 230 (285)
T ss_pred CCCHHHHhhhCCEEEEcCCCcCc---cCH--HHcCCCCEEEEcc
Confidence 46899999999999999997754 222 5677888887664
No 189
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=38.85 E-value=42 Score=36.58 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=31.5
Q ss_pred CCeEEecCHHHHhccCCEEEEecChHHHHHH-HHHhhccCCCC
Q psy14065 34 PNVVAVPDVVEAAKDADILVFVVPHQFIVRL-CSQLLGKIKPD 75 (492)
Q Consensus 34 ~~I~at~dl~~al~~aDiIilaVPs~~~~~v-l~~l~~~l~~~ 75 (492)
.++....|..+++++||+||++++...++.. .+++.+.+.++
T Consensus 398 ~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~ 440 (473)
T PLN02353 398 KQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKP 440 (473)
T ss_pred cceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCC
Confidence 3567778888899999999999999988753 45555545433
No 190
>PRK06823 ornithine cyclodeaminase; Validated
Probab=38.68 E-value=32 Score=35.35 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=29.9
Q ss_pred CeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEE
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSL 81 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~ 81 (492)
.+.+.+|.++++++||+|+.|+||.. .+++ .+++++++.|+++
T Consensus 179 ~v~~~~~~~~av~~ADIV~taT~s~~--P~~~--~~~l~~G~hi~~i 221 (315)
T PRK06823 179 AVNTTLDAAEVAHAANLIVTTTPSRE--PLLQ--AEDIQPGTHITAV 221 (315)
T ss_pred cEEEECCHHHHhcCCCEEEEecCCCC--ceeC--HHHcCCCcEEEec
Confidence 46778999999999999999998863 2221 1235566665444
No 191
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=38.32 E-value=48 Score=33.84 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=30.9
Q ss_pred CeEEecCHHHHhccCCEEEEecCh----------------HHHHHHHHHhhccCCCCCeEEEE
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPH----------------QFIVRLCSQLLGKIKPDAVGLSL 81 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs----------------~~~~~vl~~l~~~l~~~~~iIs~ 81 (492)
++++++|.+ .+++||++|++... +.++++.++|.++.+ +..+|.+
T Consensus 60 ~i~~~~d~~-~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~ 120 (309)
T cd05294 60 EIKISSDLS-DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVV 120 (309)
T ss_pred EEEECCCHH-HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEe
Confidence 467777865 59999999999852 357777777777653 4444433
No 192
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=37.95 E-value=69 Score=32.94 Aligned_cols=46 Identities=24% Similarity=0.218 Sum_probs=32.0
Q ss_pred EEecCHHHHhccCCEEEEec--Ch--------------HHHHHHHHHhhccCCCCCeEEEEE
Q psy14065 37 VAVPDVVEAAKDADILVFVV--PH--------------QFIVRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 37 ~at~dl~~al~~aDiIilaV--Ps--------------~~~~~vl~~l~~~l~~~~~iIs~~ 82 (492)
..++|..+.+++||+||++- |. +.++++.++|+++-+++.++|.++
T Consensus 49 i~~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~~i~~~a~~~~ivivvt 110 (313)
T TIGR01756 49 IVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKVLVIG 110 (313)
T ss_pred EecCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 34678877899999999965 22 147777777777765555555555
No 193
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=37.77 E-value=20 Score=38.57 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=26.2
Q ss_pred CCCCeEEecCHHHHhccCCEEEEecChHHHH
Q psy14065 32 LPPNVVAVPDVVEAAKDADILVFVVPHQFIV 62 (492)
Q Consensus 32 l~~~I~at~dl~~al~~aDiIilaVPs~~~~ 62 (492)
.|-.+..|+|.++|+++||+|+.++-.=.++
T Consensus 61 ~~~kv~~ttd~~eAl~gAdfVi~~~rvG~l~ 91 (442)
T COG1486 61 APVKVEATTDRREALEGADFVITQIRVGGLE 91 (442)
T ss_pred CCeEEEEecCHHHHhcCCCEEEEEEeeCCcc
Confidence 4457899999999999999999998665555
No 194
>PRK05442 malate dehydrogenase; Provisional
Probab=37.69 E-value=63 Score=33.39 Aligned_cols=48 Identities=25% Similarity=0.143 Sum_probs=33.6
Q ss_pred CeEEecCHHHHhccCCEEEEecC--h--------------HHHHHHHHHhhccCCCCCeEEEEE
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVP--H--------------QFIVRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVP--s--------------~~~~~vl~~l~~~l~~~~~iIs~~ 82 (492)
+++++.+..+.+++||+||++-- . +.++++.++|+++-+++.++|.++
T Consensus 67 ~~~i~~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 130 (326)
T PRK05442 67 GVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG 130 (326)
T ss_pred CcEEecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 34556666677999999999652 2 247788888888776566666665
No 195
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=37.64 E-value=37 Score=35.08 Aligned_cols=51 Identities=24% Similarity=0.238 Sum_probs=36.0
Q ss_pred eEEecCHHHHhccCCEEEEecChH-HHHHHH-HHhhccCCCCCeEEEEEcccee
Q psy14065 36 VVAVPDVVEAAKDADILVFVVPHQ-FIVRLC-SQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 36 I~at~dl~~al~~aDiIilaVPs~-~~~~vl-~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
.+... +++.+++||+|.+.+|.. .-+..+ ++....++++.++|++++|=..
T Consensus 189 ~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~V 241 (324)
T COG1052 189 ARYVD-LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLV 241 (324)
T ss_pred ceecc-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCcccc
Confidence 44445 999999999999999863 222211 2223346789999999999665
No 196
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=37.17 E-value=78 Score=33.78 Aligned_cols=119 Identities=16% Similarity=0.119 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCCeEEecCHHH---HhccCCEEEEecCh-HHHHHHHHHhhccCCCCCeEEEEEccce
Q psy14065 11 KKLTEIINETHENVKYLPGHKLPPNVVAVPDVVE---AAKDADILVFVVPH-QFIVRLCSQLLGKIKPDAVGLSLIKGFD 86 (492)
Q Consensus 11 ~~~~~~in~~~~N~~ylp~i~l~~~I~at~dl~~---al~~aDiIilaVPs-~~~~~vl~~l~~~l~~~~~iIs~~KGl~ 86 (492)
.+..+...++|... .+|....++++ .++.---|++-|.. .-++.++++|+|++.++.+||--.-..-
T Consensus 36 ~~ktd~f~~~~~~~---------k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y 106 (473)
T COG0362 36 TEKTDEFLAERAKG---------KNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHY 106 (473)
T ss_pred HHHHHHHHHhCccC---------CCccccCcHHHHHHHhcCCceEEEEEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCC
Confidence 34566666655432 23444444444 45666777777766 6789999999999999887763332222
Q ss_pred eccCCccccHHHHHHhHhCCceEEEeCcChHHHHhhcCCceEEEeecCcchHHHHHHHhc
Q psy14065 87 RAEGGGIDLISHIITRNLKIKMTVLMGANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQ 146 (492)
Q Consensus 87 ~~~~~t~~~~se~i~e~l~~~~~vlsGPn~A~Ev~~~~pt~vvias~~~~~~~~v~~lf~ 146 (492)
+ +|.++..+.-.+- . ..+=.|=|=-+|.+..-|+-+.=+ +++..+.++.+|.
T Consensus 107 ~---DT~RR~~eL~~~G--i-~FvG~GVSGGEeGA~~GPSiMpGG--~~eay~~v~pil~ 158 (473)
T COG0362 107 K---DTIRRNKELSEKG--I-LFVGMGVSGGEEGARHGPSIMPGG--QKEAYELVAPILT 158 (473)
T ss_pred c---hHHHHHHHHHhcC--C-eEEeccccccccccccCCCcCCCC--CHHHHHHHHHHHH
Confidence 2 3444433322221 1 122233344445555544433222 2445566665553
No 197
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=36.43 E-value=32 Score=35.47 Aligned_cols=25 Identities=40% Similarity=0.464 Sum_probs=22.3
Q ss_pred CeEEecCHHHHhccCCEEEEecChH
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQ 59 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~ 59 (492)
.+.+.+|.++++++||+|+.|+|+.
T Consensus 179 ~v~~~~~~~eav~~aDiVitaT~s~ 203 (325)
T TIGR02371 179 PVRAATDPREAVEGCDILVTTTPSR 203 (325)
T ss_pred cEEEeCCHHHHhccCCEEEEecCCC
Confidence 3677899999999999999999985
No 198
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=35.54 E-value=34 Score=35.38 Aligned_cols=53 Identities=30% Similarity=0.343 Sum_probs=37.7
Q ss_pred CeEEecCHHHHhccCCEEEEecChH-HHHHHH-HHhhccCCCCCeEEEEEcccee
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQ-FIVRLC-SQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~-~~~~vl-~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
......++++.++.||+|++.+|-. .-+.++ .+.-..++++.++|++++|-..
T Consensus 184 ~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vV 238 (324)
T COG0111 184 GVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVV 238 (324)
T ss_pred cceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCccee
Confidence 4556688999999999999999863 222222 1112236688999999999776
No 199
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=34.75 E-value=1.2e+02 Score=26.00 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCccc--cccccccchhhhhccCC-CC-HHHHHHHHhCCCChHHHHHHhcCCceeecc
Q psy14065 188 KAAVIRLGLMEMVKFTELFYPGAKSAT--FFESCGVADLITTCYGG-RN-RKVSEAFVKTGKSIKDLEDEMLNGQKLQGP 263 (492)
Q Consensus 188 ~aal~t~g~~Em~~l~~~~~~G~~~~t--~~glaGlGDl~~Tc~s~-RN-~~~G~~l~~~G~~~~~~~~~~~~g~~~EG~ 263 (492)
.-.++..-+.|+..++++. |-.... +.. -+-+ .+... .+ .+.-+.+.+ |. -.|==
T Consensus 36 ~~~~~~~l~~E~~~va~a~--G~~l~~~~~~~--~~~~---~~~~~~~~~~SM~~D~~~-gr-------------~tEid 94 (125)
T PF08546_consen 36 ARELIRALMREVIAVARAL--GIPLDPDDLEE--AIER---LIRSTPDNRSSMLQDIEA-GR-------------PTEID 94 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHT--TSS--HHHHHH--HHHH---HHHCTTTT--HHHHHHHT-TB---------------SHH
T ss_pred HHHHHHHHHHHHHHHHHHh--hccCcHHHHHH--HHHH---HHHhcCCccccHHHHHHH-cc-------------cccHH
Confidence 3368888899999999999 743211 111 1111 11111 11 233344443 33 33333
Q ss_pred hhHHHHHHHHHhcCCCCCCchhhhhHHhhc
Q psy14065 264 FTADEVNYMLKNKNMENKFPLFTAVHKICI 293 (492)
Q Consensus 264 ~t~~~v~~l~~~~~l~~~~PI~~av~~Il~ 293 (492)
.-.-.+.++++++|+. +|....+|..+.
T Consensus 95 ~i~G~vv~~a~~~gv~--~P~~~~i~~lvk 122 (125)
T PF08546_consen 95 YINGYVVRLAKKHGVP--TPVNETIYALVK 122 (125)
T ss_dssp HTHHHHHHHHHHTT-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC--CcHHHHHHHHHH
Confidence 4467788999999995 999999998864
No 200
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=34.65 E-value=74 Score=32.61 Aligned_cols=21 Identities=10% Similarity=0.221 Sum_probs=17.9
Q ss_pred CeEEecCHHHHhccCCEEEEec
Q psy14065 35 NVVAVPDVVEAAKDADILVFVV 56 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaV 56 (492)
.++.+.|+++ +++||+||++.
T Consensus 59 ~v~~~~dy~~-~~~adivvita 79 (312)
T cd05293 59 KIEADKDYSV-TANSKVVIVTA 79 (312)
T ss_pred EEEECCCHHH-hCCCCEEEECC
Confidence 6787889976 89999999955
No 201
>PRK06141 ornithine cyclodeaminase; Validated
Probab=34.62 E-value=27 Score=35.73 Aligned_cols=40 Identities=23% Similarity=0.235 Sum_probs=27.5
Q ss_pred CeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeE
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVG 78 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~i 78 (492)
++.+..+.++++++||+|+.|+|++ ..++.. +++++++.|
T Consensus 176 ~~~~~~~~~~av~~aDIVi~aT~s~--~pvl~~--~~l~~g~~i 215 (314)
T PRK06141 176 DAEVVTDLEAAVRQADIISCATLST--EPLVRG--EWLKPGTHL 215 (314)
T ss_pred ceEEeCCHHHHHhcCCEEEEeeCCC--CCEecH--HHcCCCCEE
Confidence 3666788999999999999999877 233321 345556543
No 202
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=34.53 E-value=40 Score=30.24 Aligned_cols=62 Identities=23% Similarity=0.384 Sum_probs=40.9
Q ss_pred CeEEecCHHHHhccCCEEEEec--Ch--------------HHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHH
Q psy14065 35 NVVAVPDVVEAAKDADILVFVV--PH--------------QFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISH 98 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaV--Ps--------------~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se 98 (492)
+.+.+.+..+++++||+||++. |. +.++++.+++.++- ++.+++.++ . -...++.
T Consensus 56 ~~~i~~~~~~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvt---N-----Pvd~~t~ 126 (141)
T PF00056_consen 56 PVRITSGDYEALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVT---N-----PVDVMTY 126 (141)
T ss_dssp EEEEEESSGGGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-S---S-----SHHHHHH
T ss_pred ccccccccccccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeC---C-----cHHHHHH
Confidence 3555556667899999999977 32 25777777777766 456655554 2 2456777
Q ss_pred HHHhHhC
Q psy14065 99 IITRNLK 105 (492)
Q Consensus 99 ~i~e~l~ 105 (492)
++++..+
T Consensus 127 ~~~~~s~ 133 (141)
T PF00056_consen 127 VAQKYSG 133 (141)
T ss_dssp HHHHHHT
T ss_pred HHHHhhC
Confidence 7777654
No 203
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=34.04 E-value=83 Score=32.44 Aligned_cols=48 Identities=25% Similarity=0.183 Sum_probs=32.1
Q ss_pred CeEEecCHHHHhccCCEEEEec--Ch--------------HHHHHHHHHhhccCCCCCeEEEEE
Q psy14065 35 NVVAVPDVVEAAKDADILVFVV--PH--------------QFIVRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaV--Ps--------------~~~~~vl~~l~~~l~~~~~iIs~~ 82 (492)
+++++++..+.+++||+||++- |. +.++++.++|+++-+++.++|.++
T Consensus 65 ~~~i~~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 65 EIVITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred ceEEecCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 3555555567799999999975 22 147777777777665456555555
No 204
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=34.02 E-value=67 Score=34.12 Aligned_cols=48 Identities=21% Similarity=0.133 Sum_probs=35.0
Q ss_pred CeEEecCHHHHhccCCEEEEec--Ch--------------HHHHHHHHHhhccCCCCCeEEEEE
Q psy14065 35 NVVAVPDVVEAAKDADILVFVV--PH--------------QFIVRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaV--Ps--------------~~~~~vl~~l~~~l~~~~~iIs~~ 82 (492)
+++++++..+.++|||+||++- |. +.++++.++|+++-+++.++|.++
T Consensus 107 ~v~i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs 170 (387)
T TIGR01757 107 EVSIGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG 170 (387)
T ss_pred ceEEecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 4776666567799999999954 32 248888888888776677666666
No 205
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=33.37 E-value=54 Score=33.67 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=37.8
Q ss_pred CHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEcccee
Q psy14065 41 DVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 41 dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
++++.++++|+||.|+-+..-|+++..+.... +.++|+++-|++-
T Consensus 101 ~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~--~k~~I~aalGfdg 145 (307)
T cd01486 101 RLEELIKDHDVIFLLTDSRESRWLPTLLSAAK--NKLVINAALGFDS 145 (307)
T ss_pred HHHHHHhhCCEEEECCCCHHHHHHHHHHHHHh--CCcEEEEEeccce
Confidence 46788999999999999999999999988654 4588888888773
No 206
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=33.01 E-value=35 Score=34.91 Aligned_cols=46 Identities=28% Similarity=0.281 Sum_probs=26.2
Q ss_pred CCeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEE
Q psy14065 34 PNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSL 81 (492)
Q Consensus 34 ~~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~ 81 (492)
..+.+.+|.++++++||+|+.|+||.....+++ ..+++++..|+++
T Consensus 178 ~~v~~~~~~~~av~~aDii~taT~s~~~~P~~~--~~~l~~g~hi~~i 223 (313)
T PF02423_consen 178 VPVVAVDSAEEAVRGADIIVTATPSTTPAPVFD--AEWLKPGTHINAI 223 (313)
T ss_dssp TCEEEESSHHHHHTTSSEEEE----SSEEESB---GGGS-TT-EEEE-
T ss_pred ccceeccchhhhcccCCEEEEccCCCCCCcccc--HHHcCCCcEEEEe
Confidence 357888999999999999999999876211111 1345666665544
No 207
>PRK05568 flavodoxin; Provisional
Probab=32.95 E-value=74 Score=27.93 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=27.4
Q ss_pred HhccCCEEEEecChH--------HHHHHHHHhhccCCCCCeEEEEEccc
Q psy14065 45 AAKDADILVFVVPHQ--------FIVRLCSQLLGKIKPDAVGLSLIKGF 85 (492)
Q Consensus 45 al~~aDiIilaVPs~--------~~~~vl~~l~~~l~~~~~iIs~~KGl 85 (492)
.+.++|.|+++.|+. .+..+++++...++.+..++..+=|-
T Consensus 45 ~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~~~~~k~~~~f~t~G~ 93 (142)
T PRK05568 45 DVKGADVVALGSPAMGDEVLEEGEMEPFVESISSLVKGKKLVLFGSYGW 93 (142)
T ss_pred HHHhCCEEEEECCccCcccccchhHHHHHHHhhhhhCCCEEEEEEccCC
Confidence 478999999999985 36677777765554344444444354
No 208
>KOG0069|consensus
Probab=32.80 E-value=58 Score=33.86 Aligned_cols=48 Identities=23% Similarity=0.276 Sum_probs=36.4
Q ss_pred cCHHHHhccCCEEEEecChH-HHHHHH-HHhhccCCCCCeEEEEEcccee
Q psy14065 40 PDVVEAAKDADILVFVVPHQ-FIVRLC-SQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 40 ~dl~~al~~aDiIilaVPs~-~~~~vl-~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
.|..+.+.++|+|++++|-. ..+.++ +++-.++++...||+++.|=..
T Consensus 209 ~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~ii 258 (336)
T KOG0069|consen 209 VDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAII 258 (336)
T ss_pred cCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccc
Confidence 47888899999999999863 333333 3445557789999999999776
No 209
>PRK06199 ornithine cyclodeaminase; Validated
Probab=32.59 E-value=34 Score=36.19 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.4
Q ss_pred CeEEecCHHHHhccCCEEEEecCh
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPH 58 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs 58 (492)
.+.+.+|.++++++||+|+-|+++
T Consensus 210 ~v~~~~s~~eav~~ADIVvtaT~s 233 (379)
T PRK06199 210 NVEVVDSIEEVVRGSDIVTYCNSG 233 (379)
T ss_pred eEEEeCCHHHHHcCCCEEEEccCC
Confidence 377789999999999999999975
No 210
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=32.44 E-value=61 Score=32.88 Aligned_cols=46 Identities=28% Similarity=0.301 Sum_probs=30.9
Q ss_pred CeEEecCHHHHhccCCEEEEecChH----------------HHHHHHHHhhccCCCCCeEEEEE
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQ----------------FIVRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~----------------~~~~vl~~l~~~l~~~~~iIs~~ 82 (492)
.++.++|. +.+++||+||++...+ .++++.++++++- ++..+|.++
T Consensus 54 ~i~~~~~~-~~l~~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~s 115 (300)
T cd00300 54 TIVRGGDY-ADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVS 115 (300)
T ss_pred eEEECCCH-HHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcc
Confidence 46666776 4689999999988542 3666677766655 455555554
No 211
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=31.47 E-value=91 Score=27.59 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=27.1
Q ss_pred HHHhccCCEEEEecChH------HHHHHHHHhh----ccCCCCCeEEEE
Q psy14065 43 VEAAKDADILVFVVPHQ------FIVRLCSQLL----GKIKPDAVGLSL 81 (492)
Q Consensus 43 ~~al~~aDiIilaVPs~------~~~~vl~~l~----~~l~~~~~iIs~ 81 (492)
.+.+..||.||+++|.. .++.+++.+. +.+. ++++..+
T Consensus 65 ~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~~~~~~~~-~K~~~~i 112 (152)
T PF03358_consen 65 YDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSCWFRRALR-GKPVAII 112 (152)
T ss_dssp HHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHHTHTTTTT-TSEEEEE
T ss_pred HhceecCCeEEEeecEEcCcCChhhhHHHHHhccccccccC-CCEEEEE
Confidence 45678999999999864 7888888884 4454 4444433
No 212
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=31.35 E-value=1.4e+02 Score=30.20 Aligned_cols=114 Identities=17% Similarity=0.128 Sum_probs=70.0
Q ss_pred CCeEEecCHHHHhccCCEEEEecChH-HHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhC-C--ceE
Q psy14065 34 PNVVAVPDVVEAAKDADILVFVVPHQ-FIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLK-I--KMT 109 (492)
Q Consensus 34 ~~I~at~dl~~al~~aDiIilaVPs~-~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~-~--~~~ 109 (492)
.+++.++|-.++++.+++.++=+|=- .--.+.+.|.+|++.+.+| |..-..+ .. -+-..++..|. . .+.
T Consensus 68 AGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVi--cnTCT~s----p~-vLy~~LE~~Lr~kR~dVG 140 (340)
T COG4007 68 AGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVI--CNTCTVS----PV-VLYYSLEGELRTKREDVG 140 (340)
T ss_pred cCcEEecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEe--cccccCc----hh-HHHHHhhhhhcCchhhcC
Confidence 37888998889999999999998864 6667899999999988854 4433333 11 12223333332 1 123
Q ss_pred EEe--------CcChHHHHhhcCCce-EEEeecCcchHHHHHHHhcCCCceEEEcC
Q psy14065 110 VLM--------GANLAGEVAEEKFCE-TTIGCKDKTLGPLLHALLQTPNFRVSVVD 156 (492)
Q Consensus 110 vls--------GPn~A~Ev~~~~pt~-vvias~~~~~~~~v~~lf~~~~f~v~~~~ 156 (492)
+-| -|++-.-+..+++|. ..+ .+++..+...++..+-...+|...
T Consensus 141 vssmHPAgvPGtp~h~~yviagr~t~g~el--ATeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 141 VSSMHPAGVPGTPQHGHYVIAGRSTEGKEL--ATEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred ccccCCCCCCCCCCCceEEEeccCCCceee--ccHHHHHHHHHHHHhcCCceEecC
Confidence 322 244433333333322 111 125677888899988888888764
No 213
>PRK06091 membrane protein FdrA; Validated
Probab=31.04 E-value=82 Score=34.98 Aligned_cols=71 Identities=14% Similarity=0.132 Sum_probs=43.7
Q ss_pred eEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhCCceEEEeCcC
Q psy14065 36 VVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGAN 115 (492)
Q Consensus 36 I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~~~~~vlsGPn 115 (492)
++...+..+.+.++|+.+++||..++.+.+++....- ..++.++-|+.. ...+.+.+.....=.-+.|||
T Consensus 105 ~~t~~~a~~~lpe~DLAvIsVPa~~v~~al~ea~~~G---~~viI~S~gfg~-------~~E~~L~e~Ar~~GlrvmGPN 174 (555)
T PRK06091 105 VRRWDSACQKLPDANLALISVAGEYAAELAEQALDRN---LNVMMFSDNVTL-------EDEIRLKTRAREKGLLVMGPD 174 (555)
T ss_pred cccHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHcC---CeEEEEcCCCCH-------HHHHHHHHHHHHcCCEEECCC
Confidence 3344444444557899999999999999998877632 335667778742 112333333222224567888
Q ss_pred h
Q psy14065 116 L 116 (492)
Q Consensus 116 ~ 116 (492)
-
T Consensus 175 C 175 (555)
T PRK06091 175 C 175 (555)
T ss_pred C
Confidence 7
No 214
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=30.23 E-value=96 Score=32.01 Aligned_cols=61 Identities=28% Similarity=0.238 Sum_probs=38.8
Q ss_pred eEEecCHHHHhccCCEEEEec--Ch--------------HHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHH
Q psy14065 36 VVAVPDVVEAAKDADILVFVV--PH--------------QFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHI 99 (492)
Q Consensus 36 I~at~dl~~al~~aDiIilaV--Ps--------------~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~ 99 (492)
++++.+..+.+++||+||++- |. +.++++.++++++-+++.++|.++ -| ...+..+
T Consensus 67 ~~i~~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs---NP-----vDv~t~v 138 (323)
T TIGR01759 67 VVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG---NP-----ANTNALI 138 (323)
T ss_pred cEEecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC---Cc-----HHHHHHH
Confidence 445555556799999999965 32 247788888888765566666555 22 3445555
Q ss_pred HHhHh
Q psy14065 100 ITRNL 104 (492)
Q Consensus 100 i~e~l 104 (492)
+.+..
T Consensus 139 ~~k~s 143 (323)
T TIGR01759 139 ASKNA 143 (323)
T ss_pred HHHHc
Confidence 55555
No 215
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=30.13 E-value=51 Score=33.36 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=28.6
Q ss_pred cCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEE
Q psy14065 40 PDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 40 ~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~ 82 (492)
.++.+.++++|+||.++|...+. ++..+.++++..+|.++
T Consensus 201 ~~l~~~l~~aDiVint~P~~ii~---~~~l~~~k~~aliIDla 240 (287)
T TIGR02853 201 NKLEEKVAEIDIVINTIPALVLT---ADVLSKLPKHAVIIDLA 240 (287)
T ss_pred HHHHHHhccCCEEEECCChHHhC---HHHHhcCCCCeEEEEeC
Confidence 46778899999999999987543 22334456677777664
No 216
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=29.64 E-value=92 Score=30.53 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=28.7
Q ss_pred EEecCHHHHh-ccCCEEEEecChHHHHHHHHHhhcc
Q psy14065 37 VAVPDVVEAA-KDADILVFVVPHQFIVRLCSQLLGK 71 (492)
Q Consensus 37 ~at~dl~~al-~~aDiIilaVPs~~~~~vl~~l~~~ 71 (492)
...+|+++.+ .+.|+|++|+|+....+...+....
T Consensus 25 ~~~~d~~eLl~~~vDaVviatp~~~H~e~a~~aL~a 60 (229)
T TIGR03855 25 KIVSDFDEFLPEDVDIVVEAASQEAVKEYAEKILKN 60 (229)
T ss_pred ceECCHHHHhcCCCCEEEECCChHHHHHHHHHHHHC
Confidence 4578888876 5799999999999999888887553
No 217
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=29.50 E-value=45 Score=30.85 Aligned_cols=38 Identities=29% Similarity=0.390 Sum_probs=25.8
Q ss_pred ecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEE
Q psy14065 39 VPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSL 81 (492)
Q Consensus 39 t~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~ 81 (492)
|.|+++.++.||+||.|++.+.+- + .++++++..+|-+
T Consensus 70 T~~l~~~~~~ADIVVsa~G~~~~i---~--~~~ik~gavVIDv 107 (160)
T PF02882_consen 70 TKNLQEITRRADIVVSAVGKPNLI---K--ADWIKPGAVVIDV 107 (160)
T ss_dssp SSSHHHHHTTSSEEEE-SSSTT-B------GGGS-TTEEEEE-
T ss_pred CCcccceeeeccEEeeeecccccc---c--cccccCCcEEEec
Confidence 368999999999999999876651 1 2457788877744
No 218
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=29.41 E-value=99 Score=31.89 Aligned_cols=48 Identities=29% Similarity=0.263 Sum_probs=29.9
Q ss_pred CeEEecCHHHHhccCCEEEEec--ChH--------------HHHHHHHHhhccCCCCCeEEEEE
Q psy14065 35 NVVAVPDVVEAAKDADILVFVV--PHQ--------------FIVRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaV--Ps~--------------~~~~vl~~l~~~l~~~~~iIs~~ 82 (492)
+++.+.|+.+++++||+||++- |.. .++++.++|+++-+++.++|.++
T Consensus 65 ~~~~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (325)
T cd01336 65 SVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG 128 (325)
T ss_pred CceecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 5666788878899999999864 221 24555556665544444444444
No 219
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=29.23 E-value=1.1e+02 Score=28.04 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=22.4
Q ss_pred CHHHHhccCCEEEEecChH------HHHHHHHHhh
Q psy14065 41 DVVEAAKDADILVFVVPHQ------FIVRLCSQLL 69 (492)
Q Consensus 41 dl~~al~~aDiIilaVPs~------~~~~vl~~l~ 69 (492)
.+.+.+.+||.||+++|.. .++.+++.+.
T Consensus 61 ~~~~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~ 95 (174)
T TIGR03566 61 RILQAIESADLLVVGSPVYRGSYTGLFKHLFDLVD 95 (174)
T ss_pred HHHHHHHHCCEEEEECCcCcCcCcHHHHHHHHhcC
Confidence 4556789999999999965 6677777664
No 220
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=28.64 E-value=62 Score=31.71 Aligned_cols=47 Identities=21% Similarity=0.325 Sum_probs=34.5
Q ss_pred CeEEecCHHHHhccCCEEEEecChHHH-HHHHHHhhccCCCCCeEEEE
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQFI-VRLCSQLLGKIKPDAVGLSL 81 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~~~-~~vl~~l~~~l~~~~~iIs~ 81 (492)
.+.+|+|-.++++++|+||-=.|--.+ ..+++++.+-++++.++-+.
T Consensus 126 g~~vttddreavedad~iitwlpkg~~qpdiikkfiddipegaivtha 173 (343)
T COG4074 126 GIVVTTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVTHA 173 (343)
T ss_pred eeEEecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCCCCceEeee
Confidence 578899999999999999987765332 35666666667777765443
No 221
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=28.26 E-value=1.1e+02 Score=31.08 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=14.7
Q ss_pred eEEecCHHHHhccCCEEEEec
Q psy14065 36 VVAVPDVVEAAKDADILVFVV 56 (492)
Q Consensus 36 I~at~dl~~al~~aDiIilaV 56 (492)
++++.+.-+.+++||+||++.
T Consensus 52 ~~i~~~~~~~~~daDivVita 72 (299)
T TIGR01771 52 KKIRSGDYSDCKDADLVVITA 72 (299)
T ss_pred eEEecCCHHHHCCCCEEEECC
Confidence 444434345699999999965
No 222
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=28.07 E-value=89 Score=31.11 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=34.3
Q ss_pred CeEEecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEcc
Q psy14065 35 NVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKG 84 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KG 84 (492)
.+.+++|+++.-.+.|+|+.|+|+....+...+... .+..+++.+.|
T Consensus 48 ~~~~~~d~~~l~~~~DvVve~t~~~~~~e~~~~aL~---aGk~Vvi~s~~ 94 (265)
T PRK13303 48 AVRVVSSVDALPQRPDLVVECAGHAALKEHVVPILK---AGIDCAVISVG 94 (265)
T ss_pred CCeeeCCHHHhccCCCEEEECCCHHHHHHHHHHHHH---cCCCEEEeChH
Confidence 467788988764568999999999988777766543 45556666655
No 223
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=27.90 E-value=1.4e+02 Score=26.43 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=35.2
Q ss_pred HhccCCEEEEecCh------HHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHh
Q psy14065 45 AAKDADILVFVVPH------QFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNL 104 (492)
Q Consensus 45 al~~aDiIilaVPs------~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l 104 (492)
.+.+.|.||++.|. ..++++++++.+.++....++ ++-|.... +....+.+.+.+.+
T Consensus 40 ~~~~yD~vi~gspiy~g~~~~~~~~fi~~~~~~l~~k~v~~-f~~~~~~~--~~~~~~~~~~~~~~ 102 (143)
T PF12724_consen 40 DLSDYDAVIFGSPIYAGRIPGEMREFIKKNKDNLKNKKVAL-FSVGGSSP--ESEKYIKKFLKEKL 102 (143)
T ss_pred ccccCCEEEEEEEEECCcCCHHHHHHHHHHHHHHcCCcEEE-EEEeCCCC--chHHHHHHHHHHhc
Confidence 46889999999876 468888988887776544444 44444321 22234444555544
No 224
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=27.13 E-value=1.2e+02 Score=31.38 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=49.3
Q ss_pred HhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCCccccHHHHHHhHhC--------CceEEEeCcCh
Q psy14065 45 AAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLK--------IKMTVLMGANL 116 (492)
Q Consensus 45 al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~t~~~~se~i~e~l~--------~~~~vlsGPn~ 116 (492)
...++|++|+|+|+..-.++..++.+ .+..||..+..+.... . +...+..+ ..-+.+.-|.+
T Consensus 65 ~~~~vD~Vf~alP~~~~~~~v~~a~~---aG~~VID~S~~fR~~~---~----~~~~~~y~~~~~~~~~~~~~~~~lpe~ 134 (343)
T PRK00436 65 ILAGADVVFLALPHGVSMDLAPQLLE---AGVKVIDLSADFRLKD---P----EVYEKWYGFEHAAPELLKEAVYGLPEL 134 (343)
T ss_pred HhcCCCEEEECCCcHHHHHHHHHHHh---CCCEEEECCcccCCCC---c----hhhHHhcCCCCCCchhhcCceeecCcc
Confidence 45789999999999988888888754 4678888887766521 0 12222222 11267778888
Q ss_pred HHHHhhcCCceEEEeecC
Q psy14065 117 AGEVAEEKFCETTIGCKD 134 (492)
Q Consensus 117 A~Ev~~~~pt~vvias~~ 134 (492)
-.|-..+. -.|+..+
T Consensus 135 ~~~~i~~~---~iIanPg 149 (343)
T PRK00436 135 NREEIKGA---RLIANPG 149 (343)
T ss_pred CHHHhcCC---CEEECCC
Confidence 77654432 4566544
No 225
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=26.15 E-value=1.4e+02 Score=27.95 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=25.2
Q ss_pred cCHHHHhccCCEEEEecChH--HHHHHHHHhhccCC
Q psy14065 40 PDVVEAAKDADILVFVVPHQ--FIVRLCSQLLGKIK 73 (492)
Q Consensus 40 ~dl~~al~~aDiIilaVPs~--~~~~vl~~l~~~l~ 73 (492)
..+.+.++.||.+|+++|.. .+..+++..-+++.
T Consensus 59 ~~~~~~i~~aD~li~~tPeYn~s~pg~lKnaiD~l~ 94 (184)
T COG0431 59 QALREAIAAADGLIIATPEYNGSYPGALKNAIDWLS 94 (184)
T ss_pred HHHHHHHHhCCEEEEECCccCCCCCHHHHHHHHhCC
Confidence 45678889999999999986 45556666555554
No 226
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=25.73 E-value=1.2e+02 Score=32.96 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=33.7
Q ss_pred CeEEecCHHHHhccCCEEEEec--Ch--------------HHHHHHHHHhhccCCCCCeEEEEE
Q psy14065 35 NVVAVPDVVEAAKDADILVFVV--PH--------------QFIVRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaV--Ps--------------~~~~~vl~~l~~~l~~~~~iIs~~ 82 (492)
+++++++.-+.++|||+||++- |. +.++++.++|.++..++.++|.++
T Consensus 163 ~v~i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs 226 (444)
T PLN00112 163 EVSIGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG 226 (444)
T ss_pred ceEEecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence 5765555556799999999965 22 247888888888655666666665
No 227
>PF14229 DUF4332: Domain of unknown function (DUF4332)
Probab=25.64 E-value=72 Score=28.00 Aligned_cols=66 Identities=17% Similarity=0.300 Sum_probs=52.7
Q ss_pred CCCcChHHHHHHHHHHHHHH--HHHHHCCCCCccccccccccchhhhhccCCCCHHHHHHHHhCCC-ChHHHH
Q psy14065 182 GLGDNTKAAVIRLGLMEMVK--FTELFYPGAKSATFFESCGVADLITTCYGGRNRKVSEAFVKTGK-SIKDLE 251 (492)
Q Consensus 182 ~~g~N~~aal~t~g~~Em~~--l~~~~~~G~~~~t~~glaGlGDl~~Tc~s~RN~~~G~~l~~~G~-~~~~~~ 251 (492)
..|-++...|+.++=.+..| |+... |.+..++..+.++.||+ |-.+=...+-..|...|. +++++.
T Consensus 13 ~~GI~t~~~Ll~~~~~~~~r~~La~~~--~i~~~~l~~w~~~AdL~--ri~gi~~~~a~LL~~AGv~Tv~~LA 81 (122)
T PF14229_consen 13 AAGIKTTGDLLEAGDTPLGRKALAKKL--GISERNLLKWVNQADLM--RIPGIGPQYAELLEHAGVDTVEELA 81 (122)
T ss_pred HcCCCcHHHHHHcCCCHHHHHHHHHhc--CCCHHHHHHHHhHHHhh--hcCCCCHHHHHHHHHhCcCcHHHHH
Confidence 46788999999999999999 88888 99999999999999999 655555555555666675 555543
No 228
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=24.90 E-value=1.1e+02 Score=28.01 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=28.0
Q ss_pred cCHHHHhccCCEEEEecChH------HHHHHHHHhhc-cCCCCCeEEEEEcc
Q psy14065 40 PDVVEAAKDADILVFVVPHQ------FIVRLCSQLLG-KIKPDAVGLSLIKG 84 (492)
Q Consensus 40 ~dl~~al~~aDiIilaVPs~------~~~~vl~~l~~-~l~~~~~iIs~~KG 84 (492)
..+.+.+.+||.||+++|-. .++.+++.+.. .+. ++++..++.|
T Consensus 57 ~~l~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~~~~l~-~K~v~~~~~g 107 (171)
T TIGR03567 57 KAATAQVAQADGVVVATPVYKASYSGVLKALLDLLPQRALR-GKVVLPIATG 107 (171)
T ss_pred HHHHHHHHHCCEEEEECCcccCCCCHHHHHHHHhCChhhhC-CCEEEEEEcC
Confidence 44556778999999999964 66777776642 233 3444433333
No 229
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=24.58 E-value=1.4e+02 Score=30.70 Aligned_cols=47 Identities=30% Similarity=0.292 Sum_probs=30.1
Q ss_pred eEEecCHHHHhccCCEEEEec--Ch--------------HHHHHHHHHhhccCCCCCeEEEEE
Q psy14065 36 VVAVPDVVEAAKDADILVFVV--PH--------------QFIVRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 36 I~at~dl~~al~~aDiIilaV--Ps--------------~~~~~vl~~l~~~l~~~~~iIs~~ 82 (492)
.+++.+..+++++||+||++- |. +.++++.++|+++-+++.++|.++
T Consensus 64 ~~i~~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 64 VVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred cEEecChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 345566678899999999864 22 146677777776654455555443
No 230
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.12 E-value=69 Score=32.48 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=28.3
Q ss_pred ecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEE
Q psy14065 39 VPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 39 t~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~ 82 (492)
|.|+++.+++||+||.|++...+ +- ..+++++.++|-+.
T Consensus 186 t~~L~~~~~~ADIvI~Avgk~~l--v~---~~~vk~GavVIDVg 224 (279)
T PRK14178 186 TENLKAELRQADILVSAAGKAGF--IT---PDMVKPGATVIDVG 224 (279)
T ss_pred hhHHHHHHhhCCEEEECCCcccc--cC---HHHcCCCcEEEEee
Confidence 46789999999999999984432 11 12367888888665
No 231
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=24.02 E-value=24 Score=31.36 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=19.0
Q ss_pred ecCHHHHhccCCEEEEecChHHH
Q psy14065 39 VPDVVEAAKDADILVFVVPHQFI 61 (492)
Q Consensus 39 t~dl~~al~~aDiIilaVPs~~~ 61 (492)
..|..++++++|+||.|+|+...
T Consensus 72 ~~~~~~~~~~~Dvvi~~~~~~~~ 94 (155)
T cd01065 72 YLDLEELLAEADLIINTTPVGMK 94 (155)
T ss_pred ecchhhccccCCEEEeCcCCCCC
Confidence 35667778999999999999864
No 232
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=23.97 E-value=1.4e+02 Score=30.62 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=30.2
Q ss_pred CeEEe---cCHHHHhccCCEEEEec--Ch--------------HHHHHHHHHhhccCCCCCeEEEEE
Q psy14065 35 NVVAV---PDVVEAAKDADILVFVV--PH--------------QFIVRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 35 ~I~at---~dl~~al~~aDiIilaV--Ps--------------~~~~~vl~~l~~~l~~~~~iIs~~ 82 (492)
.++.+ +|+.+.+++||+||++- |. +.++++.++|+++ .++..+|.++
T Consensus 52 ~i~~~~~~~~~y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvt 117 (310)
T cd01337 52 KVTGYLGPEELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIIS 117 (310)
T ss_pred eEEEecCCCchHHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEcc
Confidence 56643 34556799999999976 32 2566677777766 3455555555
No 233
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=23.82 E-value=37 Score=32.59 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=27.9
Q ss_pred HHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEE
Q psy14065 42 VVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 42 l~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~ 82 (492)
+.+.+++||+||.|++...+. +. .+++++++++|-+.
T Consensus 120 l~~~~~~ADIVIsAvG~~~~~--i~--~d~ik~GavVIDVG 156 (197)
T cd01079 120 TLDCLSQSDVVITGVPSPNYK--VP--TELLKDGAICINFA 156 (197)
T ss_pred HHHHhhhCCEEEEccCCCCCc--cC--HHHcCCCcEEEEcC
Confidence 778899999999999988762 11 23467888887654
No 234
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=23.81 E-value=1.1e+02 Score=31.91 Aligned_cols=44 Identities=30% Similarity=0.453 Sum_probs=34.6
Q ss_pred CHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEcccee
Q psy14065 41 DVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDR 87 (492)
Q Consensus 41 dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~ 87 (492)
|.++..+++|++|+|+|+..-.+++.++.+ .+..||..+.-+..
T Consensus 61 ~~~~~~~~~DvVf~alP~~~s~~~~~~~~~---~G~~VIDlS~~fR~ 104 (346)
T TIGR01850 61 DEEEIAEDADVVFLALPHGVSAELAPELLA---AGVKVIDLSADFRL 104 (346)
T ss_pred CHHHhhcCCCEEEECCCchHHHHHHHHHHh---CCCEEEeCChhhhc
Confidence 555655689999999999988888888754 46778888877664
No 235
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.68 E-value=84 Score=32.20 Aligned_cols=38 Identities=29% Similarity=0.247 Sum_probs=28.6
Q ss_pred ecCHHHHhccCCEEEEecChHH-HHHHHHHhhccCCCCCeEEEEE
Q psy14065 39 VPDVVEAAKDADILVFVVPHQF-IVRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 39 t~dl~~al~~aDiIilaVPs~~-~~~vl~~l~~~l~~~~~iIs~~ 82 (492)
|.++++++++||+||.|++... ++.. ++++++++|-++
T Consensus 193 t~~l~e~~~~ADIVIsavg~~~~v~~~------~ik~GaiVIDvg 231 (301)
T PRK14194 193 STDAKALCRQADIVVAAVGRPRLIDAD------WLKPGAVVIDVG 231 (301)
T ss_pred CCCHHHHHhcCCEEEEecCChhcccHh------hccCCcEEEEec
Confidence 4579999999999999997763 3322 277888888764
No 236
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=23.36 E-value=66 Score=34.52 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=22.0
Q ss_pred CCeEEecCHHHHhccCCEEEEecCh
Q psy14065 34 PNVVAVPDVVEAAKDADILVFVVPH 58 (492)
Q Consensus 34 ~~I~at~dl~~al~~aDiIilaVPs 58 (492)
-.+..|+|.++|+++||+||.++-.
T Consensus 61 ~~v~~t~d~~~al~gadfVi~~~~v 85 (419)
T cd05296 61 IKVHLTTDRREALEGADFVFTQIRV 85 (419)
T ss_pred eEEEEeCCHHHHhCCCCEEEEEEee
Confidence 4689999999999999999998743
No 237
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.32 E-value=58 Score=33.11 Aligned_cols=39 Identities=23% Similarity=0.187 Sum_probs=29.6
Q ss_pred ecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEE
Q psy14065 39 VPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 39 t~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~ 82 (492)
|.|+++..++||+||.|++...+-. .+++++++++|-+.
T Consensus 193 T~~l~~~~~~ADIvIsAvGk~~~i~-----~~~ik~gavVIDvG 231 (284)
T PRK14177 193 TQNLPSIVRQADIIVGAVGKPEFIK-----ADWISEGAVLLDAG 231 (284)
T ss_pred CCCHHHHHhhCCEEEEeCCCcCccC-----HHHcCCCCEEEEec
Confidence 4689999999999999998776521 34577888877653
No 238
>PRK09739 hypothetical protein; Provisional
Probab=23.22 E-value=1.7e+02 Score=27.51 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=20.6
Q ss_pred CHHHHhccCCEEEEecChH------HHHHHHHHh
Q psy14065 41 DVVEAAKDADILVFVVPHQ------FIVRLCSQL 68 (492)
Q Consensus 41 dl~~al~~aDiIilaVPs~------~~~~vl~~l 68 (492)
.+.+.+.+||.||++.|-. .++.+++++
T Consensus 72 ~~~~~l~~AD~iV~~~P~y~~~~Pa~LK~~iD~v 105 (199)
T PRK09739 72 QLYSELLEHDALVFVFPLWWYSFPAMLKGYIDRV 105 (199)
T ss_pred HHHHHHHhCCEEEEECchhhhcchHHHHHHHHHH
Confidence 4456689999999999964 556666665
No 239
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.18 E-value=56 Score=33.24 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=29.7
Q ss_pred ecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEE
Q psy14065 39 VPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 39 t~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~ 82 (492)
|.|+++.+++||+||.|++.+.+- . .+++++++++|-+.
T Consensus 191 T~~l~~~~~~ADIvV~AvG~p~~i---~--~~~ik~GavVIDvG 229 (287)
T PRK14181 191 SENLTEILKTADIIIAAIGVPLFI---K--EEMIAEKAVIVDVG 229 (287)
T ss_pred CCCHHHHHhhCCEEEEccCCcCcc---C--HHHcCCCCEEEEec
Confidence 578999999999999999776541 1 24577888887653
No 240
>PRK05086 malate dehydrogenase; Provisional
Probab=23.08 E-value=1.3e+02 Score=30.85 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=14.4
Q ss_pred ecCHHHHhccCCEEEEec
Q psy14065 39 VPDVVEAAKDADILVFVV 56 (492)
Q Consensus 39 t~dl~~al~~aDiIilaV 56 (492)
.+|+.++++++|+||++.
T Consensus 60 ~~d~~~~l~~~DiVIita 77 (312)
T PRK05086 60 GEDPTPALEGADVVLISA 77 (312)
T ss_pred CCCHHHHcCCCCEEEEcC
Confidence 457667789999999987
No 241
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.07 E-value=79 Score=32.32 Aligned_cols=36 Identities=31% Similarity=0.368 Sum_probs=27.0
Q ss_pred CHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEE
Q psy14065 41 DVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSL 81 (492)
Q Consensus 41 dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~ 81 (492)
+++++++.||+||.|++...+ ++. .++++++++|.+
T Consensus 194 ~l~e~~~~ADIVIsavg~~~~---v~~--~~lk~GavVIDv 229 (296)
T PRK14188 194 DLPAVCRRADILVAAVGRPEM---VKG--DWIKPGATVIDV 229 (296)
T ss_pred CHHHHHhcCCEEEEecCChhh---cch--heecCCCEEEEc
Confidence 789999999999999987652 222 236778877765
No 242
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=23.01 E-value=1.1e+02 Score=31.30 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=16.4
Q ss_pred CCeEE-ec--CHHHHhccCCEEEEec
Q psy14065 34 PNVVA-VP--DVVEAAKDADILVFVV 56 (492)
Q Consensus 34 ~~I~a-t~--dl~~al~~aDiIilaV 56 (492)
.+++. +. |+.+++++||+||++.
T Consensus 50 ~~i~~~~~~~~~~~~~~daDivvita 75 (312)
T TIGR01772 50 ASVKGFSGEEGLENALKGADVVVIPA 75 (312)
T ss_pred ceEEEecCCCchHHHcCCCCEEEEeC
Confidence 35665 22 3467899999999976
No 243
>PRK00170 azoreductase; Reviewed
Probab=22.81 E-value=1.3e+02 Score=28.05 Aligned_cols=26 Identities=19% Similarity=0.209 Sum_probs=19.0
Q ss_pred HHHhccCCEEEEecChH------HHHHHHHHh
Q psy14065 43 VEAAKDADILVFVVPHQ------FIVRLCSQL 68 (492)
Q Consensus 43 ~~al~~aDiIilaVPs~------~~~~vl~~l 68 (492)
.+.+.+||.||++.|-. .++.+++++
T Consensus 81 ~~~i~~AD~iV~~sP~y~~~~pa~LK~~iDrv 112 (201)
T PRK00170 81 LEEFLAADKIVIAAPMYNFSIPTQLKAYIDLI 112 (201)
T ss_pred HHHHHHCCEEEEeecccccCCcHHHHHHHHhh
Confidence 35578999999999975 455555554
No 244
>PRK01355 azoreductase; Reviewed
Probab=22.69 E-value=1.5e+02 Score=28.00 Aligned_cols=28 Identities=14% Similarity=0.244 Sum_probs=20.9
Q ss_pred HHHHhccCCEEEEecChH------HHHHHHHHhh
Q psy14065 42 VVEAAKDADILVFVVPHQ------FIVRLCSQLL 69 (492)
Q Consensus 42 l~~al~~aDiIilaVPs~------~~~~vl~~l~ 69 (492)
+.+.+.+||.||+++|-. .++.+++++.
T Consensus 71 ~~~~l~~AD~iV~~sP~y~~~ipa~LK~~iDrv~ 104 (199)
T PRK01355 71 YINQLKSVDKVVISCPMTNFNVPATLKNYLDHIA 104 (199)
T ss_pred HHHHHHhCCEEEEEcCccccCChHHHHHHHHHHH
Confidence 456789999999999965 5566666653
No 245
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=22.66 E-value=1.7e+02 Score=29.69 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=26.6
Q ss_pred ecCHHHHhccCCEEEEecChH----------------HHHHHHHHhhccCCCCCeEEEEE
Q psy14065 39 VPDVVEAAKDADILVFVVPHQ----------------FIVRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 39 t~dl~~al~~aDiIilaVPs~----------------~~~~vl~~l~~~l~~~~~iIs~~ 82 (492)
+.+.+ .+++||+||+++..+ .++++.++++++-+ +..+|.++
T Consensus 60 ~~~~~-~l~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vivvs 117 (306)
T cd05291 60 AGDYS-DCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFLVAS 117 (306)
T ss_pred cCCHH-HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEec
Confidence 35554 589999999998542 35666666666443 44445444
No 246
>TIGR01021 rpsE_bact ribosomal protein S5, bacterial/organelle type. This model finds chloroplast ribosomal protein S5 as well as bacterial ribosomal protein S5. A candidate mitochondrial form (Saccharomyces cerevisiae YBR251W and its homolog) differs substantially and is not included in this model.
Probab=22.33 E-value=85 Score=28.90 Aligned_cols=46 Identities=26% Similarity=0.337 Sum_probs=31.3
Q ss_pred CCCccccccccccceeeecccCCcc-HHHHHHHH---hcCCCHHHHHHHh
Q psy14065 420 GAKSATFFESCGVADLITTCYGGRN-RKVSEAFV---KTGKSIKDLEDEM 465 (492)
Q Consensus 420 g~~~~t~~~~~g~gDl~~T~~~~rn-~~~g~~~~---~~g~~~~~~~~~~ 465 (492)
|.....+++++|+=|+...+.+|+| .++-++.. .+-++.+++.+.-
T Consensus 99 ~~~~~~il~laGI~Dv~~k~~Gs~n~~n~vkAt~~aL~~~~s~~~ia~~r 148 (154)
T TIGR01021 99 GGAVRAILELAGVKDILAKSLGSNNPINVVRATFDALLKLKSPEDVAELR 148 (154)
T ss_pred CcHHHHHHHHcCcceEEEEccCCCChHHHHHHHHHHHHcCCCHHHHHHHc
Confidence 4556778899999999999999887 33333321 2446666665554
No 247
>PRK11579 putative oxidoreductase; Provisional
Probab=22.31 E-value=1.7e+02 Score=30.11 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=32.6
Q ss_pred eEEecCHHHHhc--cCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEEccce
Q psy14065 36 VVAVPDVVEAAK--DADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFD 86 (492)
Q Consensus 36 I~at~dl~~al~--~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~ 86 (492)
+.+.+|+++.++ +.|+|++|+|+..-.++..+..+ .++.| .|=|=+.
T Consensus 50 ~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~~al~---aGkhV-l~EKPla 98 (346)
T PRK11579 50 VTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAKAALE---AGKHV-VVDKPFT 98 (346)
T ss_pred CceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHH---CCCeE-EEeCCCC
Confidence 456889999986 47999999999877666666543 33333 3555544
No 248
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.23 E-value=60 Score=33.02 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=27.7
Q ss_pred ecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEE
Q psy14065 39 VPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 39 t~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~ 82 (492)
|.|+.+.+++||+||.||+.+.+ +.. .+++++.++|-+.
T Consensus 192 t~~l~~~~~~ADIVIsAvg~p~~---i~~--~~vk~gavVIDvG 230 (286)
T PRK14175 192 SKDMASYLKDADVIVSAVGKPGL---VTK--DVVKEGAVIIDVG 230 (286)
T ss_pred chhHHHHHhhCCEEEECCCCCcc---cCH--HHcCCCcEEEEcC
Confidence 45788899999999999988743 111 2466777776553
No 249
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=21.77 E-value=2e+02 Score=29.22 Aligned_cols=90 Identities=13% Similarity=0.156 Sum_probs=55.0
Q ss_pred HHHHHHcCCCCCCCCCCCCCCCeEEecCHHHHh-ccCCEEEE-ecChHHHHHHHHHhhccCCCCCeEEEEEccceeccCC
Q psy14065 14 TEIINETHENVKYLPGHKLPPNVVAVPDVVEAA-KDADILVF-VVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGG 91 (492)
Q Consensus 14 ~~~in~~~~N~~ylp~i~l~~~I~at~dl~~al-~~aDiIil-aVPs~~~~~vl~~l~~~l~~~~~iIs~~KGl~~~~~~ 91 (492)
-+.+..-|.+..|.+.++. .+.--.++.+|+ .++|+|.+ =.+++.+++.++.+ .+ ++..++-++=|+.+
T Consensus 175 ~~Av~~aR~~~~~~~kIEV--Evesle~~~eAl~agaDiImLDNm~~e~~~~av~~l--~~-~~~~~lEaSGgIt~---- 245 (280)
T COG0157 175 TEAVRRARAAAPFTKKIEV--EVESLEEAEEALEAGADIIMLDNMSPEELKEAVKLL--GL-AGRALLEASGGITL---- 245 (280)
T ss_pred HHHHHHHHHhCCCCceEEE--EcCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHh--cc-CCceEEEEeCCCCH----
Confidence 3445555555444333322 011113455666 45999999 67999999999887 12 45778899999987
Q ss_pred ccccHHHHHHhHh--CCceEEEeCcChHH
Q psy14065 92 GIDLISHIITRNL--KIKMTVLMGANLAG 118 (492)
Q Consensus 92 t~~~~se~i~e~l--~~~~~vlsGPn~A~ 118 (492)
+-+.+.. +..+...+-|.|..
T Consensus 246 ------~ni~~yA~tGVD~IS~galths~ 268 (280)
T COG0157 246 ------ENIREYAETGVDVISVGALTHSA 268 (280)
T ss_pred ------HHHHHHhhcCCCEEEeCccccCC
Confidence 3444433 45677777776653
No 250
>PRK13556 azoreductase; Provisional
Probab=21.65 E-value=1.3e+02 Score=28.57 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=20.3
Q ss_pred CHHHHhccCCEEEEecChH------HHHHHHHHhh
Q psy14065 41 DVVEAAKDADILVFVVPHQ------FIVRLCSQLL 69 (492)
Q Consensus 41 dl~~al~~aDiIilaVPs~------~~~~vl~~l~ 69 (492)
.+.+-++.||.||+++|-. .++.+++++.
T Consensus 82 ~~~~~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~ 116 (208)
T PRK13556 82 KYLNQFLEADKVVFAFPLWNFTIPAVLHTYIDYLN 116 (208)
T ss_pred HHHHHHHHCCEEEEeccccccCCcHHHHHHHHHHh
Confidence 3445578999999999965 4555555554
No 251
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=21.55 E-value=1.7e+02 Score=31.86 Aligned_cols=47 Identities=17% Similarity=0.114 Sum_probs=32.8
Q ss_pred CeEEecCHHHHhccCCEEEEec--Ch--------------HHHHHHHHHhhccCCCCCeEEEE
Q psy14065 35 NVVAVPDVVEAAKDADILVFVV--PH--------------QFIVRLCSQLLGKIKPDAVGLSL 81 (492)
Q Consensus 35 ~I~at~dl~~al~~aDiIilaV--Ps--------------~~~~~vl~~l~~~l~~~~~iIs~ 81 (492)
+++++++..+++++||+||++- |. +.++++.++|.++-+++.-|+.+
T Consensus 186 ~v~i~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv 248 (452)
T cd05295 186 GISVTTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVA 248 (452)
T ss_pred CcEEEECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 5777777788999999999965 32 24777778887776644433333
No 252
>PRK05569 flavodoxin; Provisional
Probab=20.83 E-value=1.9e+02 Score=25.24 Aligned_cols=37 Identities=14% Similarity=0.122 Sum_probs=25.1
Q ss_pred HhccCCEEEEecChH--------HHHHHHHHhhccCCCCCeEEEE
Q psy14065 45 AAKDADILVFVVPHQ--------FIVRLCSQLLGKIKPDAVGLSL 81 (492)
Q Consensus 45 al~~aDiIilaVPs~--------~~~~vl~~l~~~l~~~~~iIs~ 81 (492)
.+.++|.|+++.|+. .+..+++.+.....+++.++.+
T Consensus 45 ~~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~~~~K~v~~f 89 (141)
T PRK05569 45 DVLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTPNENKKCILF 89 (141)
T ss_pred HHhhCCEEEEECCCcCCCcCChHHHHHHHHHhhccCcCCCEEEEE
Confidence 478999999999973 3677777776543234444443
No 253
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=20.74 E-value=1.4e+02 Score=28.25 Aligned_cols=30 Identities=23% Similarity=0.198 Sum_probs=22.0
Q ss_pred cCHHHHhccCCEEEEecChH------HHHHHHHHhh
Q psy14065 40 PDVVEAAKDADILVFVVPHQ------FIVRLCSQLL 69 (492)
Q Consensus 40 ~dl~~al~~aDiIilaVPs~------~~~~vl~~l~ 69 (492)
..+.+.+++||.||+++|-. .++.+++.+.
T Consensus 58 ~~~~~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~l~ 93 (191)
T PRK10569 58 KTFTEQLAQADGLIVATPVYKASFSGALKTLLDLLP 93 (191)
T ss_pred HHHHHHHHHCCEEEEECCccCCCCCHHHHHHHHhCC
Confidence 34557789999999999964 5666666553
No 254
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=20.70 E-value=1.3e+02 Score=30.40 Aligned_cols=40 Identities=23% Similarity=0.473 Sum_probs=28.4
Q ss_pred cCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEE
Q psy14065 40 PDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 40 ~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~ 82 (492)
.++.+.++++|+||.++|+..+. +.....++++..||-++
T Consensus 202 ~~l~~~l~~aDiVI~t~p~~~i~---~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 202 SELAEEVGKIDIIFNTIPALVLT---KEVLSKMPPEALIIDLA 241 (296)
T ss_pred HHHHHHhCCCCEEEECCChhhhh---HHHHHcCCCCcEEEEEc
Confidence 46778889999999999986442 33334466777777554
No 255
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.44 E-value=68 Score=32.75 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=29.6
Q ss_pred ecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEEE
Q psy14065 39 VPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 39 t~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~~ 82 (492)
|.|+.+.+++||+||.|++.+.+-. .+++++++++|-+.
T Consensus 195 T~nl~~~~~~ADIvIsAvGkp~~i~-----~~~vk~gavVIDvG 233 (293)
T PRK14185 195 SKNLKKECLEADIIIAALGQPEFVK-----ADMVKEGAVVIDVG 233 (293)
T ss_pred CCCHHHHHhhCCEEEEccCCcCccC-----HHHcCCCCEEEEec
Confidence 5789999999999999997766421 34577888877653
No 256
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.31 E-value=79 Score=32.14 Aligned_cols=38 Identities=24% Similarity=0.283 Sum_probs=28.8
Q ss_pred ecCHHHHhccCCEEEEecChHHH-HHHHHHhhccCCCCCeEEEEE
Q psy14065 39 VPDVVEAAKDADILVFVVPHQFI-VRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 39 t~dl~~al~~aDiIilaVPs~~~-~~vl~~l~~~l~~~~~iIs~~ 82 (492)
|.|+++.+++||+||.|++.+.+ .. .++++++++|-+.
T Consensus 193 T~~l~~~~~~ADIvi~avG~p~~v~~------~~vk~gavVIDvG 231 (285)
T PRK10792 193 TKNLRHHVRNADLLVVAVGKPGFIPG------EWIKPGAIVIDVG 231 (285)
T ss_pred CCCHHHHHhhCCEEEEcCCCcccccH------HHcCCCcEEEEcc
Confidence 57899999999999999954443 21 5577888887665
No 257
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=20.27 E-value=1.7e+02 Score=30.11 Aligned_cols=47 Identities=26% Similarity=0.210 Sum_probs=27.8
Q ss_pred eEEecCHHHHhccCCEEEEec--ChH--------------HHHHHHHHhhccCCCCCeEEEEE
Q psy14065 36 VVAVPDVVEAAKDADILVFVV--PHQ--------------FIVRLCSQLLGKIKPDAVGLSLI 82 (492)
Q Consensus 36 I~at~dl~~al~~aDiIilaV--Ps~--------------~~~~vl~~l~~~l~~~~~iIs~~ 82 (492)
+..+++..+++++||+||++- |.+ .++++.++|+++-+++.++|.++
T Consensus 63 ~~~~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs 125 (324)
T TIGR01758 63 VVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG 125 (324)
T ss_pred eeccCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 444556567799999999965 321 25555556555543444444444
No 258
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.21 E-value=68 Score=32.65 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=28.8
Q ss_pred ecCHHHHhccCCEEEEecChHHHHHHHHHhhccCCCCCeEEEE
Q psy14065 39 VPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSL 81 (492)
Q Consensus 39 t~dl~~al~~aDiIilaVPs~~~~~vl~~l~~~l~~~~~iIs~ 81 (492)
|.|+++.+++||+||.|+....+-. .+++++++++|-+
T Consensus 189 T~~l~~~~~~ADIvIsAvGkp~~i~-----~~~vk~GavVIDV 226 (287)
T PRK14173 189 TQDLPAVTRRADVLVVAVGRPHLIT-----PEMVRPGAVVVDV 226 (287)
T ss_pred CCCHHHHHhhCCEEEEecCCcCccC-----HHHcCCCCEEEEc
Confidence 4689999999999999997765421 3457788877755
Done!