RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14065
(492 letters)
>gnl|CDD|234190 TIGR03376, glycerol3P_DH, glycerol-3-phosphate dehydrogenase
(NAD(+)). Members of this protein family are the
eukaryotic enzyme, glycerol-3-phosphate dehydrogenase
(NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is
defined as sn-glycerol 3-phosphate + NAD(+) = glycerone
phosphate + NADH. Note the very similar reactions of
enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to
families of proteins in the bacteria.
Length = 342
Score = 485 bits (1250), Expect = e-171
Identities = 182/309 (58%), Positives = 227/309 (73%), Gaps = 5/309 (1%)
Query: 1 MYVYEEMIDGKKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQF 60
M+V+EE I+G+ LTEIIN THENVKYLPG KLP N+VAVPD+VEAAK ADILVFV+PHQF
Sbjct: 35 MWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAAKGADILVFVIPHQF 94
Query: 61 IVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANLAGEV 120
+ +C QL G +KP+A +S IKG + ++ G + L+S II L I VL GANLA EV
Sbjct: 95 LEGICKQLKGHVKPNARAISCIKGLEVSKDG-VKLLSDIIEEELGIPCGVLSGANLANEV 153
Query: 121 AEEKFCETTIGCKD----KTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAG 176
A+EKF ETT+G +D +L AL P FRV+VVDDV VEI GALKN+VA AG
Sbjct: 154 AKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAG 213
Query: 177 FVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKV 236
FVDGLG GDN KAAV+R GL+EM+KF +F+P + FESCGVADLITTC GGRN KV
Sbjct: 214 FVDGLGWGDNAKAAVMRRGLLEMIKFARMFFPTGEVTFTFESCGVADLITTCLGGRNFKV 273
Query: 237 SEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEM 296
AF KTGKS+++LE E+LNGQ LQG TA EV+ +LKNKN +++FPLF AV++I +
Sbjct: 274 GRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNKDDEFPLFEAVYQILYEGL 333
Query: 297 KPQQFIDAI 305
P++ + +
Sbjct: 334 PPKKLPECL 342
Score = 263 bits (675), Expect = 2e-84
Identities = 101/166 (60%), Positives = 122/166 (73%), Gaps = 4/166 (2%)
Query: 331 VAEEKFCETTIGCKD----KTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGA 386
VA+EKF ETT+G +D +L AL P FRV+VVDDV VEI GALKN+VA A
Sbjct: 153 VAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAA 212
Query: 387 GFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRK 446
GFVDGLG GDN KAAV+R GL+EM+KF +F+P + FESCGVADLITTC GGRN K
Sbjct: 213 GFVDGLGWGDNAKAAVMRRGLLEMIKFARMFFPTGEVTFTFESCGVADLITTCLGGRNFK 272
Query: 447 VSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENK 492
V AF KTGKS+++LE E+LNGQ LQG TA EV+ +LKNKN +++
Sbjct: 273 VGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNKDDE 318
>gnl|CDD|240373 PTZ00345, PTZ00345, glycerol-3-phosphate dehydrogenase;
Provisional.
Length = 365
Score = 382 bits (984), Expect = e-130
Identities = 154/307 (50%), Positives = 204/307 (66%), Gaps = 5/307 (1%)
Query: 1 MYVYEEMIDGKKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQF 60
M+V EE+++G+KL++IIN HENVKYLPG KLP N+VAV D+ EA +DAD+L+FV+PHQF
Sbjct: 46 MWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAVEDADLLIFVIPHQF 105
Query: 61 IVRLCSQL--LGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANLAG 118
+ + SQ+ +K A +SL KG E G L S +I L I L GAN+A
Sbjct: 106 LESVLSQIKENNNLKKHARAISLTKGI-IVENGKPVLCSDVIEEELGIPCCALSGANVAN 164
Query: 119 EVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFV 178
+VA E+F E TIGC+DK + L P F+++ V DV VE+CGALKNI+A AGF
Sbjct: 165 DVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFC 224
Query: 179 DGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKVSE 238
DGLGLG NTK+A+IR+GL EM F ++F+P TFFESCG+ADLITTC GGRN + +
Sbjct: 225 DGLGLGTNTKSAIIRIGLEEMKLFGKIFFPNVMDETFFESCGLADLITTCLGGRNVRCAA 284
Query: 239 AFVKTG--KSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEM 296
F K KS +++E E+LNGQKLQG T EV +L++ +++ +FPLFT +KI
Sbjct: 285 EFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLESHDLKKEFPLFTVTYKIAFEGA 344
Query: 297 KPQQFID 303
P ID
Sbjct: 345 DPSSLID 351
Score = 211 bits (539), Expect = 5e-64
Identities = 86/174 (49%), Positives = 116/174 (66%), Gaps = 2/174 (1%)
Query: 320 AVLISSLTSSHVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALK 379
L + ++ VA E+F E TIGC+DK + L P F+++ V DV VE+CGALK
Sbjct: 155 CALSGANVANDVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALK 214
Query: 380 NIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTC 439
NI+A AGF DGLGLG NTK+A+IR+GL EM F ++F+P TFFESCG+ADLITTC
Sbjct: 215 NIIALAAGFCDGLGLGTNTKSAIIRIGLEEMKLFGKIFFPNVMDETFFESCGLADLITTC 274
Query: 440 YGGRNRKVSEAFVKTG--KSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMEN 491
GGRN + + F K KS +++E E+LNGQKLQG T EV +L++ +++
Sbjct: 275 LGGRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLESHDLKK 328
>gnl|CDD|223318 COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 329
Score = 289 bits (743), Expect = 1e-94
Identities = 112/292 (38%), Positives = 153/292 (52%), Gaps = 13/292 (4%)
Query: 17 INETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDA 76
INET EN KYLPG LPPN+ A D+ EA ADI+V VP Q + + QL + DA
Sbjct: 40 INETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLKDA 99
Query: 77 VGLSLIKGFDRAEGGGIDLISHIITRNLKI-KMTVLMGANLAGEVAEEKFCETTIGCKDK 135
+ +S KG + L+S II L + VL G + A EVA+ + D+
Sbjct: 100 IIVSATKGLEP---ETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQ 156
Query: 136 TLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLG 195
+ AL +P FRV DV VEI GALKN++A AG DGLGLGDN KAA+I G
Sbjct: 157 EAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRG 216
Query: 196 LMEMVKFTELFYPGAKSATFFESCGVADLITTCYG--GRNRKVSEAFVKTGKSIKDLEDE 253
L EM + GAK TF G+ DLI TC RNR+ + G S+ + +E
Sbjct: 217 LAEMTRLGVAL--GAKPETFMGLSGLGDLILTCTSPLSRNRRFGLLLGQ-GLSLDEALEE 273
Query: 254 MLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQQFIDAI 305
+ GQ ++G TA V Y L K + + P+ AV+++ + P++ I+ +
Sbjct: 274 I--GQVVEGVRTAKAV-YELAKK-LGIEMPITEAVYRVLYEGLDPKEAIEEL 321
Score = 160 bits (408), Expect = 3e-45
Identities = 63/162 (38%), Positives = 83/162 (51%), Gaps = 7/162 (4%)
Query: 331 VAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVD 390
VA+ + D+ + AL +P FRV DV VEI GALKN++A AG D
Sbjct: 141 VAQGLPTAVVVASNDQEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIAD 200
Query: 391 GLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYG--GRNRKVS 448
GLGLGDN KAA+I GL EM + GAK TF G+ DLI TC RNR+
Sbjct: 201 GLGLGDNAKAALITRGLAEMTRLGVAL--GAKPETFMGLSGLGDLILTCTSPLSRNRRFG 258
Query: 449 EAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNME 490
+ G S+ + +E+ GQ ++G TA V + K +E
Sbjct: 259 LLLGQ-GLSLDEALEEI--GQVVEGVRTAKAVYELAKKLGIE 297
>gnl|CDD|234629 PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase; Validated.
Length = 325
Score = 216 bits (553), Expect = 2e-66
Identities = 102/293 (34%), Positives = 147/293 (50%), Gaps = 14/293 (4%)
Query: 17 INETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDA 76
IN EN +YLPG KLP N+ A D+ EA DAD+++ VP Q + + QL + PDA
Sbjct: 40 INADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPSQALREVLKQLKPLLPPDA 99
Query: 77 VGLSLIKGFDRAEGGGIDLISHIITRNL--KIKMTVLMGANLAGEVAEEKFCETTIGCKD 134
+ KG + G L+S ++ L + VL G + A EVA I D
Sbjct: 100 PIVWATKGIEPGTG---KLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTD 156
Query: 135 KTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRL 194
+ L + L +P FRV DV VE+ GALKN++A AG DGLGLGDN +AA+I
Sbjct: 157 EELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITR 216
Query: 195 GLMEMVKFTELFYPGAKSATFFESCGVADLITTCYG--GRNRKVSEAFVKTGKSIKDLED 252
GL E+ + GA TF G+ DL+ TC RNR+ A + GKS+++
Sbjct: 217 GLAEITRLGVAL--GANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQ-GKSLEEALA 273
Query: 253 EMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQQFIDAI 305
E+ G +G TA V + K +E P+ AV+ + P++ ++ +
Sbjct: 274 EI--GMVAEGVRTAKAVYELAKKLGVE--MPITEAVYAVLYEGKDPREAVEDL 322
Score = 128 bits (325), Expect = 2e-33
Identities = 58/152 (38%), Positives = 77/152 (50%), Gaps = 7/152 (4%)
Query: 331 VAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVD 390
VA I D+ L + L +P FRV DV VE+ GALKN++A AG D
Sbjct: 142 VARGLPTAVVIASTDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIAD 201
Query: 391 GLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYG--GRNRKVS 448
GLGLGDN +AA+I GL E+ + GA TF G+ DL+ TC RNR+
Sbjct: 202 GLGLGDNARAALITRGLAEITRLGVAL--GANPETFLGLAGLGDLVLTCTSPLSRNRRFG 259
Query: 449 EAFVKTGKSIKDLEDEMLNGQKLQGPFTADEV 480
A + GKS+++ E+ G +G TA V
Sbjct: 260 LALGQ-GKSLEEALAEI--GMVAEGVRTAKAV 288
>gnl|CDD|116100 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-phosphate
dehydrogenase C-terminus. NAD-dependent
glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the
interconversion of dihydroxyacetone phosphate and
L-glycerol-3-phosphate. This family represents the
C-terminal substrate-binding domain.
Length = 145
Score = 205 bits (524), Expect = 1e-64
Identities = 76/152 (50%), Positives = 99/152 (65%), Gaps = 9/152 (5%)
Query: 156 DDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATF 215
+DV VEI GALKN++A AG +DGLG GDNTKAA+I GLMEM+KF G TF
Sbjct: 1 EDVVGVEIGGALKNVIAIAAGILDGLGFGDNTKAALITRGLMEMIKFGAAL--GGGPETF 58
Query: 216 FESCGVADLITTCYG--GRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYML 273
F G+ DLITTC GRNR+V EA K GKS++++E E+ GQ +G TA EV +
Sbjct: 59 FGLAGLGDLITTCTSELGRNRRVGEALGK-GKSLEEIEKEL--GQVAEGVKTAKEVYELA 115
Query: 274 KNKNMENKFPLFTAVHKICIGEMKPQQFIDAI 305
K K + FPLFTAV++I +KP++ I+ +
Sbjct: 116 KRKGL--DFPLFTAVYRILYEGLKPEEAIEYL 145
Score = 177 bits (450), Expect = 1e-53
Identities = 65/127 (51%), Positives = 82/127 (64%), Gaps = 7/127 (5%)
Query: 367 DDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATF 426
+DV VEI GALKN++A AG +DGLG GDNTKAA+I GLMEM+KF G TF
Sbjct: 1 EDVVGVEIGGALKNVIAIAAGILDGLGFGDNTKAALITRGLMEMIKFGAAL--GGGPETF 58
Query: 427 FESCGVADLITTCYG--GRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYML 484
F G+ DLITTC GRNR+V EA K GKS++++E E+ GQ +G TA EV +
Sbjct: 59 FGLAGLGDLITTCTSELGRNRRVGEALGK-GKSLEEIEKEL--GQVAEGVKTAKEVYELA 115
Query: 485 KNKNMEN 491
K K ++
Sbjct: 116 KRKGLDF 122
>gnl|CDD|201664 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate
dehydrogenase N-terminus. NAD-dependent
glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the
interconversion of dihydroxyacetone phosphate and
L-glycerol-3-phosphate. This family represents the
N-terminal NAD-binding domain.
Length = 157
Score = 150 bits (380), Expect = 3e-43
Identities = 55/128 (42%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Query: 11 KKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLG 70
++L E IN T ENVKYLPG KLP N+ A D+ EA K ADI+V VP Q + + QL G
Sbjct: 32 EELIEEINTTRENVKYLPGIKLPDNLRATTDLEEAIKGADIIVLAVPSQALREVLKQLKG 91
Query: 71 KIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKI-KMTVLMGANLAGEVAEEKFCETT 129
+ P A+ +SL KG E G + L+S II L I + VL G + A EVA T
Sbjct: 92 LLSPGAILVSLTKGI---EPGTLKLLSEIIEEELPINPIAVLSGPSHAEEVALGLPTATV 148
Query: 130 IGCKDKTL 137
+ +D+
Sbjct: 149 VASEDQQA 156
>gnl|CDD|237770 PRK14618, PRK14618, NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase; Provisional.
Length = 328
Score = 142 bits (359), Expect = 2e-38
Identities = 96/290 (33%), Positives = 140/290 (48%), Gaps = 17/290 (5%)
Query: 19 ETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVG 78
EN +YLPG LP + D EA AD V VP + + + L P A+G
Sbjct: 45 AERENREYLPGVALPAELYPTADPEEALAGADFAVVAVPSKALRETLAGL-----PRALG 99
Query: 79 -LSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANLAGEVAEEKFCETTIGCKDKTL 137
+S KG +GG + ++ ++ + ++ VL G N A E+A T + + L
Sbjct: 100 YVSCAKGL-APDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPEPGL 158
Query: 138 GPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLM 197
+ A P+FRV D VE+ GALKN++A AG VDGL LGDN KAA+I GL
Sbjct: 159 ARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLR 218
Query: 198 EMVKFTELFYPGAKSATFFESCGVADLITTCYG--GRNRKVSEAFVKTGKSIKDLEDEML 255
EMV+F GA+ ATF+ G+ DLI T RNR EA V+ G + LE
Sbjct: 219 EMVRF--GVALGAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVR-GVDREHLEAG-- 273
Query: 256 NGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQQFIDAI 305
G+ ++G +T ++ K + P+ AV ++ G P + ++
Sbjct: 274 -GKVVEGLYTVKALDAWAKAHGHD--LPIVEAVARVARGGWDPLAGLRSL 320
Score = 97.6 bits (243), Expect = 2e-22
Identities = 58/141 (41%), Positives = 76/141 (53%), Gaps = 8/141 (5%)
Query: 339 TTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNT 398
T + + L + A P+FRV D VE+ GALKN++A AG VDGL LGDN
Sbjct: 149 TVVASPEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNA 208
Query: 399 KAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYG--GRNRKVSEAFVKTGK 456
KAA+I GL EMV+F GA+ ATF+ G+ DLI T RNR EA V+ G
Sbjct: 209 KAALITRGLREMVRF--GVALGAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVR-GV 265
Query: 457 SIKDLEDEMLNGQKLQGPFTA 477
+ LE G+ ++G +T
Sbjct: 266 DREHLEAG---GKVVEGLYTV 283
>gnl|CDD|171500 PRK12439, PRK12439, NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase; Provisional.
Length = 341
Score = 139 bits (352), Expect = 3e-37
Identities = 86/235 (36%), Positives = 111/235 (47%), Gaps = 10/235 (4%)
Query: 17 INETHENVKYLP-GHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPD 75
IN+ H N +YL L + A D EAA AD++V VP + ++L +++P
Sbjct: 45 INDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVPSHGFRGVLTELAKELRPW 104
Query: 76 AVGLSLIKGFDRAEGGGIDLISHIITRNLK-IKMTVLMGANLAGEVAEEKFCETTIGCKD 134
+SL+KG E G +S II L +L G N+A EVAE + D
Sbjct: 105 VPVVSLVKGL---EQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLAMPD 161
Query: 135 KTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRL 194
+ L L L +T FRV DDV VE+ GALKN+ A G LG+G+NT+A VI
Sbjct: 162 QHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIAR 221
Query: 195 GLMEMVKFTELFYPGAKSATFFESCGVADLITTCYG--GRNRKVSEAFVKTGKSI 247
L EM K G TF G+ DLI TC RNR V E GK I
Sbjct: 222 ALREMTKLGVAM--GGNPETFAGLAGMGDLIVTCTSQRSRNRHVGEQLGA-GKPI 273
Score = 91.0 bits (226), Expect = 4e-20
Identities = 58/165 (35%), Positives = 72/165 (43%), Gaps = 13/165 (7%)
Query: 296 MKPQQFIDAIREHPDHKVSTAQKEAVLISSLTSSHVAEEKFCETTIGCKDKTLGPLLHAL 355
M+ Q I+ + P H +L + VAE + D+ L L L
Sbjct: 120 MRMSQIIEEVL--PGHPA------GILAGPNIAREVAEGYAAAAVLAMPDQHLATRLSPL 171
Query: 356 LQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTE 415
+T FRV DDV VE+ GALKN+ A G LG+G+NT+A VI L EM K
Sbjct: 172 FRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGV 231
Query: 416 LFYPGAKSATFFESCGVADLITTCYG--GRNRKVSEAFVKTGKSI 458
G TF G+ DLI TC RNR V E GK I
Sbjct: 232 AM--GGNPETFAGLAGMGDLIVTCTSQRSRNRHVGEQLGA-GKPI 273
>gnl|CDD|173083 PRK14620, PRK14620, NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase; Provisional.
Length = 326
Score = 99 bits (249), Expect = 3e-23
Identities = 84/291 (28%), Positives = 131/291 (45%), Gaps = 23/291 (7%)
Query: 11 KKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKD-ADILVFVVPHQFIVRLCSQLL 69
E IN +N+KYLP LP N+ + E D A ++ VP Q + +C QL
Sbjct: 33 HTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPTQQLRTICQQLQ 92
Query: 70 GK-IKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIK-MTVLMGANLAGEVAEEKFCE 127
+K + L KG E + S I+ L + +L G + A E+AE+ C
Sbjct: 93 DCHLKKNTPILICSKGI---EKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCS 149
Query: 128 TTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNT 187
+ +++TLG L + L N ++ D+ V+I ALKNI+A G V G LG+N
Sbjct: 150 IVLAGQNETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNA 209
Query: 188 KAAVIRLGLMEMVKFTELFYPGAKSAT------FFESCGVADLITTCYGGRNRKVSEAF- 240
AAVI G M +K AK+ + SC + DLI TC +R +S F
Sbjct: 210 HAAVITKG-MNEIKTLYS----AKNGSIDLNTLIGPSC-LGDLILTCTTLHSRNMSFGFK 263
Query: 241 VKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKI 291
+ G +I + E ++G T + + K N+E P+ +++ +
Sbjct: 264 IGNGFNINQILSE--GKSVIEGFSTVKPLISLAKKLNIE--LPICESIYNL 310
Score = 62.5 bits (152), Expect = 1e-10
Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 13/141 (9%)
Query: 331 VAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVD 390
+AE+ C + +++TLG L + L N ++ D+ V+I ALKNI+A G V
Sbjct: 142 IAEKLPCSIVLAGQNETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVL 201
Query: 391 GLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSAT------FFESCGVADLITTCYGGRN 444
G LG+N AAVI G M +K AK+ + SC + DLI TC +
Sbjct: 202 GKNLGNNAHAAVITKG-MNEIKTLYS----AKNGSIDLNTLIGPSC-LGDLILTCTTLHS 255
Query: 445 RKVSEAF-VKTGKSIKDLEDE 464
R +S F + G +I + E
Sbjct: 256 RNMSFGFKIGNGFNINQILSE 276
>gnl|CDD|237771 PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase; Provisional.
Length = 308
Score = 94.3 bits (235), Expect = 2e-21
Identities = 77/279 (27%), Positives = 131/279 (46%), Gaps = 24/279 (8%)
Query: 40 PDVVEAAKDADILVFVVPHQFIVRLCSQLLG-KIKPDAVGLSLIKGFDRAEGGGIDLISH 98
+ DAD++V V + + + Q+ + P+ + ++ KG D S
Sbjct: 39 LSLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPPETIIVTATKGLDPE---TTRTPSQ 95
Query: 99 IITRNLKIK-MTVLMGANLAGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDD 157
I + VL G NL+ E+ + T + +D + + + FRV D
Sbjct: 96 IWQAAFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSERFRVYTNSD 155
Query: 158 VDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKF-TELFYPGAKSATFF 216
E+ G LKN++A AG DGL LG N KAA++ L EM++ T L GA++ TF+
Sbjct: 156 PLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHL---GAQTETFY 212
Query: 217 ESCGVADLITTCYG--GRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVN---Y 271
G+ DL+ TC RN +V + GKS++ ++L +L+G TA+ VN
Sbjct: 213 GLSGLGDLLATCTSPLSRNYQVGYGLAQ-GKSLE----QILA--ELEG--TAEGVNTANV 263
Query: 272 MLKNKNMEN-KFPLFTAVHKICIGEMKPQQFIDAIREHP 309
+++ +N P+ V+++ GE+ PQQ ++ + E
Sbjct: 264 LVQLAQQQNIAVPITEQVYRLLQGEITPQQALEELMERD 302
Score = 80.0 bits (198), Expect = 1e-16
Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 339 TTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNT 398
T + +D + + + FRV D E+ G LKN++A AG DGL LG N
Sbjct: 126 TVVASRDLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNA 185
Query: 399 KAAVIRLGLMEMVKF-TELFYPGAKSATFFESCGVADLITTCYG--GRNRKVSEAFVKTG 455
KAA++ L EM++ T L GA++ TF+ G+ DL+ TC RN +V + G
Sbjct: 186 KAALVTRALPEMIRVGTHL---GAQTETFYGLSGLGDLLATCTSPLSRNYQVGYGLAQ-G 241
Query: 456 KSIKDLEDEMLNGQKLQGPFTADEVN 481
KS++ ++L +L+G TA+ VN
Sbjct: 242 KSLE----QILA--ELEG--TAEGVN 259
>gnl|CDD|202773 pfam03807, F420_oxidored, NADP oxidoreductase coenzyme
F420-dependent.
Length = 93
Score = 31.0 bits (71), Expect = 0.28
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 31 KLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQL 68
+L AV EA ++AD++ V + + ++L
Sbjct: 42 ELGVKATAV-SNEEAVEEADVVFLAVKPEDAPEVLAEL 78
>gnl|CDD|115835 pfam07206, Baculo_LEF-10, Baculovirus late expression factor 10
(LEF-10). This family consists of several Baculovirus
specific late expression factor 10 (LEF-10) sequences.
LEF-10 is thought to be a late expressed structural
protein although its exact function is unknown.
Length = 71
Score = 29.9 bits (68), Expect = 0.49
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 24/77 (31%)
Query: 263 PFTADEV-NYMLKNKNME---NKFPLFTAVHK-------ICIGEMKPQQFIDAIREHPDH 311
AD+V N +LK+ N+E N + + V + +C+GE ID+ +
Sbjct: 4 LSAADDVLNCILKD-NLELIDNTYLILNVVDQESGEVKPVCLGE------IDSFQTD--- 53
Query: 312 KVSTAQKEAVLISSLTS 328
T +EAV SS TS
Sbjct: 54 ---TDDQEAVSDSSSTS 67
>gnl|CDD|236326 PRK08655, PRK08655, prephenate dehydrogenase; Provisional.
Length = 437
Score = 32.3 bits (74), Expect = 0.67
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 9 DGKKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQL 68
D KK E+ E V+Y D ++AAKDADI++ VP + ++
Sbjct: 33 DPKKGKEVAKEL--GVEYAN------------DNIDAAKDADIVIISVPINVTEDVIKEV 78
Query: 69 LGKIKPDAV 77
+K ++
Sbjct: 79 APHVKEGSL 87
>gnl|CDD|232829 TIGR00112, proC, pyrroline-5-carboxylate reductase. This enzyme
catalyzes the final step in proline biosynthesis. Among
the four paralogs in Bacillus subtilis (proG, proH,
proI, and comER), ComER is the most divergent and does
not prevent proline auxotrophy from mutation of the
other three. It is excluded from the seed and scores
between the trusted and noise cutoffs [Amino acid
biosynthesis, Glutamate family].
Length = 245
Score = 31.1 bits (71), Expect = 1.0
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 35 NVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGID 94
+VA D EA K+AD++ V Q + + S+L + D + +S+ A G ++
Sbjct: 30 GIVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISI------AAGVTLE 83
Query: 95 LISHIITRNLKI 106
+S ++ ++
Sbjct: 84 KLSQLLGGTRRV 95
>gnl|CDD|187827 cd09696, Cas3_I, CRISPR/Cas system-associated protein Cas3;
Distinct Cas3 family with HD domain fused to C-termus of
Helicase domain. CRISPR (Clustered Regularly
Interspaced Short Palindromic Repeats) and associated
Cas proteins comprise a system for heritable host
defense by prokaryotic cells against phage and other
foreign DNA; DNA helicase Cas3; This protein includes
both DEAH and HD motifs; signature gene for Type I.
Length = 843
Score = 30.8 bits (69), Expect = 1.9
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 159 DAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELF--------YPGA 210
D V + L N+ FV LGLGD KA L ++ K F YP A
Sbjct: 671 DEVALSDHLDNVFEVAKNFVAKLGLGDLDKAVRQAARLHDLGKQRPRFQTMLGNRSYPLA 730
Query: 211 KSA 213
K A
Sbjct: 731 KLA 733
Score = 30.8 bits (69), Expect = 1.9
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 370 DAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELF--------YPGA 421
D V + L N+ FV LGLGD KA L ++ K F YP A
Sbjct: 671 DEVALSDHLDNVFEVAKNFVAKLGLGDLDKAVRQAARLHDLGKQRPRFQTMLGNRSYPLA 730
Query: 422 KSA 424
K A
Sbjct: 731 KLA 733
>gnl|CDD|217691 pfam03720, UDPG_MGDP_dh_C, UDP-glucose/GDP-mannose dehydrogenase
family, UDP binding domain. The
UDP-glucose/GDP-mannose dehydrogenaseses are a small
group of enzymes which possesses the ability to
catalyze the NAD-dependent 2-fold oxidation of an
alcohol to an acid without the release of an aldehyde
intermediate.
Length = 103
Score = 28.7 bits (65), Expect = 2.0
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 30 HKLPPNVVAVPDVVEAAKDADILVFVVPH 58
V V D+ EA K AD +V + H
Sbjct: 47 ALGEDGVTLVDDLEEALKGADAIVILTDH 75
>gnl|CDD|220175 pfam09316, Cmyb_C, C-myb, C-terminal. Members of this family are
predominantly found in the proto-oncogene c-myb and the
viral transforming protein myb. Truncation of the domain
results in 'activation' of c-myb and subsequent
tumourigenesis.
Length = 168
Score = 29.4 bits (66), Expect = 2.6
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 325 SLTSSHVAEEKFCETTIGCKDKTLGPLL---HALLQTPNFRVSVVD 367
SLTS+ V +K TT +DKT PLL ++ +TPN R S++D
Sbjct: 22 SLTSTPVCSQKAIVTTPLHRDKT--PLLQKENSGFRTPNIRRSILD 65
>gnl|CDD|216795 pfam01933, UPF0052, Uncharacterized protein family UPF0052.
Length = 291
Score = 29.9 bits (68), Expect = 2.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 33 PPNVVAVPDVVEAAKDADILVF 54
P + A P+ VEA KDAD++V
Sbjct: 157 PEDPKAAPEAVEAIKDADLIVL 178
>gnl|CDD|215097 PLN00193, PLN00193, expansin-A; Provisional.
Length = 256
Score = 29.9 bits (67), Expect = 2.9
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 206 FYPGAK-SATFFESCGVADLITTCYGGRNRKVSEAFVKTGKS 246
FY G+ S T +CG +L +T YG R +S A G S
Sbjct: 37 FYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGAS 78
Score = 29.9 bits (67), Expect = 2.9
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 417 FYPGAK-SATFFESCGVADLITTCYGGRNRKVSEAFVKTGKS 457
FY G+ S T +CG +L +T YG R +S A G S
Sbjct: 37 FYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGAS 78
>gnl|CDD|236193 PRK08229, PRK08229, 2-dehydropantoate 2-reductase; Provisional.
Length = 341
Score = 29.6 bits (67), Expect = 3.4
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 31 KLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKGFDRAE 89
++PP+ +A A AD+++ V + L G +P AV +S G A+
Sbjct: 56 RVPPSAIAFSTDPAALATADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNAD 114
>gnl|CDD|223468 COG0391, COG0391, Uncharacterized conserved protein [Function
unknown].
Length = 323
Score = 29.5 bits (67), Expect = 4.3
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 11/56 (19%)
Query: 6 EMIDGKKLTEIINETHENVKYLPGHKL-------PPNVVAVPDVVEAAKDADILVF 54
E DG++ + E+ + L G + P A P+ VEA K+AD++V
Sbjct: 144 ETEDGRR--IVFGES--WIAELGGPPVHRVRLEGPEKPSAAPEAVEAIKEADLIVI 195
>gnl|CDD|214856 smart00852, MoCF_biosynth, Probable molybdopterin binding domain.
This domain is found a variety of proteins involved in
biosynthesis of molybdopterin cofactor. The domain is
presumed to bind molybdopterin. The structure of this
domain is known, and it forms an alpha/beta structure.
In the known structure of Gephyrin this domain mediates
trimerisation.
Length = 138
Score = 28.3 bits (64), Expect = 4.5
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 18/87 (20%)
Query: 138 GPLLHALLQTPNFRVS------VVDDVDAV--EICGALKN---IVACGAGFVDGLGLG-- 184
GP+L ALL+ V DD +A+ + AL ++ G G G G
Sbjct: 20 GPMLAALLRELGIEVVRVVVVGGPDDPEAIREALREALAEADVVITTG-----GTGPGPD 74
Query: 185 DNTKAAVIRLGLMEMVKFTELFYPGAK 211
D T A+ LG E++ PG
Sbjct: 75 DLTPEALAELGGRELLGHGVAMRPGGP 101
Score = 28.3 bits (64), Expect = 4.5
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 18/87 (20%)
Query: 349 GPLLHALLQTPNFRVS------VVDDVDAV--EICGALKN---IVACGAGFVDGLGLG-- 395
GP+L ALL+ V DD +A+ + AL ++ G G G G
Sbjct: 20 GPMLAALLRELGIEVVRVVVVGGPDDPEAIREALREALAEADVVITTG-----GTGPGPD 74
Query: 396 DNTKAAVIRLGLMEMVKFTELFYPGAK 422
D T A+ LG E++ PG
Sbjct: 75 DLTPEALAELGGRELLGHGVAMRPGGP 101
>gnl|CDD|165267 PHA02961, PHA02961, hypothetical protein; Provisional.
Length = 658
Score = 29.1 bits (65), Expect = 6.6
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 263 PFTADEVNYMLKNKNMENKFPLF----TAVHKICIGEMK 297
F+ D++ + NK +N L+ T +H I + E K
Sbjct: 145 HFSLDDIKTIFDNKGADNTKELYKKIDTPIHNILLMEEK 183
>gnl|CDD|233953 TIGR02621, cas3_GSU0051, CRISPR-associated helicase Cas3, subtype
Dpsyc. This model describes a CRISPR-associated
putative DEAH-box helicase, or Cas3, of a subtype found
in Actinomyces naeslundii MG1, Geobacter sulfurreducens
PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea
psychrophila. This protein includes both DEAH and HD
motifs [Mobile and extrachromosomal element functions,
Other].
Length = 862
Score = 29.1 bits (65), Expect = 7.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 156 DDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVI 192
DD D V +CG L + +V LGLG+ AV+
Sbjct: 683 DDADEVTLCGHLDRVGERAKQWVRALGLGELLVEAVV 719
Score = 29.1 bits (65), Expect = 7.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 367 DDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVI 403
DD D V +CG L + +V LGLG+ AV+
Sbjct: 683 DDADEVTLCGHLDRVGERAKQWVRALGLGELLVEAVV 719
>gnl|CDD|211689 TIGR01826, CofD_related, conserved hypothetical protein,
cofD-related. This model represents a subfamily of
conserved hypothetical proteins that forms a sister
group to the family of CofD, (TIGR01819), LPPG:Fo
2-phospho-L-lactate transferase, an enzyme of cytochrome
F420 biosynthesis. Both this family and TIGR01819 are
within the scope of the Pfam model pfam01933
[Hypothetical proteins, Conserved].
Length = 310
Score = 28.4 bits (64), Expect = 7.7
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 6 EMIDGKKLT--EIINETHENVK--YLPGHKLPPNVVAVPDVVEAAKDADILVF 54
E DG+++ I + + L P +V A+ + VEA ++AD+++
Sbjct: 130 EFEDGREVRGESNIPKMGGKIDRVRL----EPEDVPALREAVEAIREADLIIL 178
>gnl|CDD|99714 cd06165, Sortase_A_1, Sortase A (SrtA) or subfamily-1 sortases are
cysteine transpeptidases found in gram-positive bacteria
that anchor surface proteins to peptidoglycans of the
bacterial cell wall envelope. They do so by catalyzing a
transpeptidation reaction in which the surface protein
substrate is cleaved at a conserved cell wall sorting
signal (usually a pentapeptide motif), and covalently
linked to peptidoglycan for display on the bacterial
surface. Sortases are grouped into different classes and
subfamilies based on sequence, membrane topology,
genomic positioning, and cleavage site preference. This
group contains a subset of Class A (subfamily-1)
sortases, excluding SrtA from Staphylococcus aureus.
Sortase A cleaves between threonine and glycine of the
LPXTG motif in a wide range of protein substrates. It
affects the ability of a pathogen to establish
successful infection. Sortase A contains an N-terminal
region that functions as both a signal peptide for
secretion and a stop-transfer signal for membrane
anchoring. At the C-terminus, it contains the catalytic
TLXTC signature sequence where X is usually a valine,
isoleucine or a threonine. The gene encoding SrtA is
generally not located in the same gene cluster as its
substrates while the gene encoding SrtB is usually
clustered in the same locus as its substrate.
Length = 127
Score = 27.6 bits (62), Expect = 7.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 270 NYMLKNKNMENKFPLFTAVHKICIGEM 296
NY L NM NK LF+ ++K+ +G+
Sbjct: 43 NYALAGHNMRNKGVLFSPLYKVKVGDK 69
>gnl|CDD|132873 cd07187, YvcK_like, family of mostly uncharacterized proteins
similar to B.subtilis YvcK. One member of this protein
family, YvcK from Bacillus subtilis, has been proposed
to play a role in carbon metabolism, since its function
is essential for growth on intermediates of the Krebs
cycle and the pentose phosphate pathway. In general,
this family of mostly uncharacterized proteins is
related to the CofD-like protein family. CofD has been
characterized as a 2-phospho-L-lactate transferase
involved in F420 biosynthesis. This family appears to
have the same conserved phosphate binding site as the
other family in this hierarchy, but a different
substrate binding site.
Length = 308
Score = 28.7 bits (65), Expect = 7.9
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 5 EEMIDGKKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVF 54
E I +L I + V P P+ A P+ +EA ++AD++V+
Sbjct: 141 ESRISHLELGSPI----KRVFLEP-----PDPKANPEALEAIEEADLIVY 181
>gnl|CDD|178291 PLN02688, PLN02688, pyrroline-5-carboxylate reductase.
Length = 266
Score = 28.4 bits (64), Expect = 9.3
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 36 VVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKG 84
V E K +D+++ V Q + + ++L + D + +S+ G
Sbjct: 49 VKTAASNTEVVKSSDVIILAVKPQVVKDVLTELRPLLSKDKLLVSVAAG 97
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.399
Gapped
Lambda K H
0.267 0.0785 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,874,214
Number of extensions: 2458374
Number of successful extensions: 2396
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2357
Number of HSP's successfully gapped: 54
Length of query: 492
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 391
Effective length of database: 6,457,848
Effective search space: 2525018568
Effective search space used: 2525018568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)