RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14065
(492 letters)
>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+],
cytoplasmic; two independent domains, GXGXXG motif,
oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A*
1wpq_A* 2pla_A*
Length = 354
Score = 478 bits (1233), Expect = e-168
Identities = 210/312 (67%), Positives = 248/312 (79%), Gaps = 2/312 (0%)
Query: 1 MYVYEEMIDGKKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQF 60
M+V+EE I GKKLTEIIN HENVKYLPGHKLPPNVVAVPDVV+AA+DADIL+FVVPHQF
Sbjct: 43 MWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQF 102
Query: 61 IVRLCSQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANLAGEV 120
I ++C QL G +K +A G+SLIKG D G + LIS +I L I M+VLMGAN+A EV
Sbjct: 103 IGKICDQLKGHLKANATGISLIKGVDEGPNG-LKLISEVIGERLGIPMSVLMGANIASEV 161
Query: 121 AEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDG 180
A+EKFCETTIGCKD G LL L+QTPNFR++VV +VD VEICGALKN+VA GAGF DG
Sbjct: 162 ADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDG 221
Query: 181 LGLGDNTKAAVIRLGLMEMVKFTELFYP-GAKSATFFESCGVADLITTCYGGRNRKVSEA 239
LG GDNTKAAVIRLGLMEM+ F +LF SATF ESCGVADLITTCYGGRNRKV+EA
Sbjct: 222 LGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEA 281
Query: 240 FVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQ 299
F +TGKSI+ LE E+LNGQKLQGP TA E+ +L++K + +KFPLF AV+K+C
Sbjct: 282 FARTGKSIEQLEKELLNGQKLQGPETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVG 341
Query: 300 QFIDAIREHPDH 311
+FI ++ HP+H
Sbjct: 342 EFIHCLQNHPEH 353
Score = 264 bits (676), Expect = 1e-84
Identities = 116/163 (71%), Positives = 134/163 (82%), Gaps = 1/163 (0%)
Query: 331 VAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVD 390
VA+EKFCETTIGCKD G LL L+QTPNFR++VV +VD VEICGALKN+VA GAGF D
Sbjct: 161 VADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCD 220
Query: 391 GLGLGDNTKAAVIRLGLMEMVKFTELFYP-GAKSATFFESCGVADLITTCYGGRNRKVSE 449
GLG GDNTKAAVIRLGLMEM+ F +LF SATF ESCGVADLITTCYGGRNRKV+E
Sbjct: 221 GLGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAE 280
Query: 450 AFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENK 492
AF +TGKSI+ LE E+LNGQKLQGP TA E+ +L++K + +K
Sbjct: 281 AFARTGKSIEQLEKELLNGQKLQGPETARELYSILQHKGLVDK 323
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI;
2.85A {Plasmodium falciparum}
Length = 375
Score = 465 bits (1200), Expect = e-163
Identities = 127/317 (40%), Positives = 186/317 (58%), Gaps = 7/317 (2%)
Query: 1 MYVYEEMIDGKKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQF 60
M++ +E ++G+++ +IIN HEN KYL G LP N+VA D+ DAD+L+F+VP Q+
Sbjct: 56 MWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVINDADLLIFIVPCQY 115
Query: 61 IVRLCSQLLG----KIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANL 116
+ + + + KI A +SL KGF + + L S+ I+ L I + L GAN+
Sbjct: 116 LESVLASIKESESIKIASHAKAISLTKGFIV-KKNQMKLCSNYISDFLNIPCSALSGANI 174
Query: 117 AGEVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAG 176
A +VA E F E TIG DK + + P F+++ V++ VEICGALKNI+ G
Sbjct: 175 AMDVAMENFSEATIGGNDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACG 234
Query: 177 FVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKV 236
F DGL L N+K+A+IR G+ EM+ F ++F+ ESCG AD+IT+ GRN K
Sbjct: 235 FCDGLNLPTNSKSAIIRNGINEMILFGKVFFQKFNENILLESCGFADIITSFLAGRNAKC 294
Query: 237 SEAFVKT--GKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIG 294
S F+K+ K+ ++LE+E+L GQKLQG T V +M+K KNM N+FPLFT +HKI
Sbjct: 295 SAEFIKSTPKKTWEELENEILKGQKLQGTVTLKYVYHMIKEKNMTNEFPLFTVLHKISFE 354
Query: 295 EMKPQQFIDAIREHPDH 311
P + + +
Sbjct: 355 NEDPSSLLKTFMNNKIN 371
Score = 259 bits (665), Expect = 1e-82
Identities = 73/164 (44%), Positives = 101/164 (61%), Gaps = 2/164 (1%)
Query: 331 VAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVD 390
VA E F E TIG DK + + P F+++ V++ VEICGALKNI+ GF D
Sbjct: 178 VAMENFSEATIGGNDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCD 237
Query: 391 GLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKVSEA 450
GL L N+K+A+IR G+ EM+ F ++F+ ESCG AD+IT+ GRN K S
Sbjct: 238 GLNLPTNSKSAIIRNGINEMILFGKVFFQKFNENILLESCGFADIITSFLAGRNAKCSAE 297
Query: 451 FVKT--GKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENK 492
F+K+ K+ ++LE+E+L GQKLQG T V +M+K KNM N+
Sbjct: 298 FIKSTPKKTWEELENEILKGQKLQGTVTLKYVYHMIKEKNMTNE 341
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976,
oxidoreductase, phospholipid biosynthesis; HET: EPE;
2.10A {Coxiella burnetii}
Length = 356
Score = 211 bits (540), Expect = 2e-64
Identities = 82/293 (27%), Positives = 135/293 (46%), Gaps = 14/293 (4%)
Query: 15 EIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKP 74
+ + N +YLP + P + A D+ + + ++ VVP + +++ I
Sbjct: 66 DEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVPSFAFHEVITRMKPLIDA 125
Query: 75 DAVGLSLIKGFDRAEGGGIDLISHIITRNL-KIKMTVLMGANLAGEVAEEKFCETTIGCK 133
KG + G L+ ++ L ++ M V+ G +LA EVA ++
Sbjct: 126 KTRIAWGTKGLAK----GSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLASN 181
Query: 134 DKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIR 193
+ L L FRV DD+ VE+CG++KNI+A G DGL LG N +AA+I
Sbjct: 182 NSQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALIT 241
Query: 194 LGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYG--GRNRKVSEAFVKTGKSIKDLE 251
GL EM + +F G K T G+ DL+ TC RNR+ A + G K+ +
Sbjct: 242 RGLTEMGRLVSVF--GGKQETLTGLAGLGDLVLTCTDNQSRNRRFGLALGE-GVDKKEAQ 298
Query: 252 DEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQQFIDA 304
+ GQ ++G + D+V+ + + +E PL VH+I ++ PQQ +
Sbjct: 299 QAI--GQAIEGLYNTDQVHALAQKHAIE--MPLTFQVHRILHEDLDPQQAVQE 347
Score = 124 bits (314), Expect = 7e-32
Identities = 51/152 (33%), Positives = 74/152 (48%), Gaps = 7/152 (4%)
Query: 331 VAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVD 390
VA ++ + L L FRV DD+ VE+CG++KNI+A G D
Sbjct: 168 VAANLPTAVSLASNNSQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISD 227
Query: 391 GLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYG--GRNRKVS 448
GL LG N +AA+I GL EM + +F G K T G+ DL+ TC RNR+
Sbjct: 228 GLKLGSNARAALITRGLTEMGRLVSVF--GGKQETLTGLAGLGDLVLTCTDNQSRNRRFG 285
Query: 449 EAFVKTGKSIKDLEDEMLNGQKLQGPFTADEV 480
A + G K+ + + GQ ++G + D+V
Sbjct: 286 LALGE-GVDKKEAQQAI--GQAIEGLYNTDQV 314
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase;
HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6
c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A*
1n1g_A*
Length = 366
Score = 203 bits (518), Expect = 5e-61
Identities = 82/298 (27%), Positives = 134/298 (44%), Gaps = 20/298 (6%)
Query: 17 INETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKI---- 72
+NE ENV +L G +L N+ DV +A A+I++FV+P QF+ + G +
Sbjct: 54 VNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYA 113
Query: 73 -KPDAVGLSLIKGFDRAEGGGIDLISHIITRNL-KIKMTVLMGANLAGEVAEEKFCETTI 130
+ L KG E + + II L ++VL G + A EVA F +I
Sbjct: 114 KEKQVPVLVCTKGI---ERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSI 170
Query: 131 GCKDKTLGPLLHALLQTPN--FRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTK 188
D + L ++ T + F D E+ A+KN++A G+G +GLG+G N +
Sbjct: 171 ASADINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNAR 230
Query: 189 AAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGG--RNRKVSEAFVKTGKS 246
AA+I GL+E+ T G + F G+ DL TC RN V + K G
Sbjct: 231 AALIMRGLLEIRDLTAAL--GGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGK-GLP 287
Query: 247 IKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQQFIDA 304
I++++ +G TAD + + K ++ PL +++I + P+ +
Sbjct: 288 IEEIQRTS--KAVAEGVATADPLMRLAKQLKVK--MPLCHQIYEIVYKKKNPRDALAD 341
Score = 120 bits (303), Expect = 2e-30
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 9/154 (5%)
Query: 331 VAEEKFCETTIGCKDKTLGPLLHALLQTPN--FRVSVVDDVDAVEICGALKNIVACGAGF 388
VA F +I D + L ++ T + F D E+ A+KN++A G+G
Sbjct: 160 VATGVFTCVSIASADINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGV 219
Query: 389 VDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGG--RNRK 446
+GLG+G N +AA+I GL+E+ T G + F G+ DL TC RN
Sbjct: 220 ANGLGMGLNARAALIMRGLLEIRDLTAAL--GGDGSAVFGLAGLGDLQLTCSSELSRNFT 277
Query: 447 VSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEV 480
V + K G I++++ +G TAD +
Sbjct: 278 VGKKLGK-GLPIEEIQRTS--KAVAEGVATADPL 308
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A
{Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Length = 335
Score = 197 bits (504), Expect = 2e-59
Identities = 57/311 (18%), Positives = 125/311 (40%), Gaps = 24/311 (7%)
Query: 11 KKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLG 70
++ + I+ E+ + + + + ++A++++ V ++ + S++L
Sbjct: 35 TEILKSISAGREHPRLGVKL-NGVEIFWPEQLEKCLENAEVVLLGVSTDGVLPVMSRILP 93
Query: 71 KIKPDAVGLSLIKGFDRAEGGGIDLISHIITR---NLKIKMTVLMGANLAGEVAEEKFCE 127
+K + + + KG + + + R +L+ + + G +A EVA+
Sbjct: 94 YLKDQYI-VLISKGLID-FDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTT 151
Query: 128 TTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLG--- 184
++ + + +T F V V D+ EI ALKN+ + ++ G
Sbjct: 152 VVFSSPSESSANKMKEIFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNV 211
Query: 185 --DNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKVSEAFVK 242
N K + + EM + E+ G T F G DLI T GGRN + E K
Sbjct: 212 EMSNAKGVIATRAINEMAELIEIL--GGDRETAFGLSGFGDLIATFRGGRNGMLGELLGK 269
Query: 243 TGKSIKDLEDEMLNGQKLQ----GPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKP 298
G SI + +E+ ++ G TA++ + N + L +++++ +K
Sbjct: 270 -GLSIDEAMEEL--ERRGVGVVEGYKTAEKAYRLSSKINAD--TKLLDSIYRVLYEGLKV 324
Query: 299 QQFIDAI--RE 307
++ + + +
Sbjct: 325 EEVLFELATFK 335
Score = 121 bits (305), Expect = 7e-31
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 8/140 (5%)
Query: 331 VAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVD 390
VA+ ++ + + +T F V V D+ EI ALKN+ + ++
Sbjct: 144 VAKRMPTTVVFSSPSESSANKMKEIFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIR 203
Query: 391 GLGLG-----DNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNR 445
G N K + + EM + E+ G T F G DLI T GGRN
Sbjct: 204 GYESRKNVEMSNAKGVIATRAINEMAELIEIL--GGDRETAFGLSGFGDLIATFRGGRNG 261
Query: 446 KVSEAFVKTGKSIKDLEDEM 465
+ E K G SI + +E+
Sbjct: 262 MLGELLGK-GLSIDEAMEEL 280
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint
center for structural genomics, JCSG, protein structu
initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga
maritima}
Length = 335
Score = 191 bits (487), Expect = 7e-57
Identities = 90/296 (30%), Positives = 138/296 (46%), Gaps = 22/296 (7%)
Query: 11 KKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLG 70
K++ ++IN +H + Y+ K+ V A D+ E K DILV +P Q+I +L
Sbjct: 47 KEIVDLINVSHTS-PYVEESKIT--VRATNDL-EEIKKEDILVIAIPVQYIREHLLRLP- 101
Query: 71 KIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANLAGEVAEEKFCETTI 130
++ L+L KG E +S I+ L VL G + A EVA++ T+
Sbjct: 102 --VKPSMVLNLSKGI---EIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVAKKLPTAVTL 156
Query: 131 GCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAA 190
++ L + T FRV +DV VEI GALKN++A AG +DG G DN KAA
Sbjct: 157 AGENSKE---LQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAA 213
Query: 191 VIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYG--GRNRKVSEAFVKTGKSIK 248
+ G+ E+ +F F GA TF G+ DL+ TC RNR+ E + G +
Sbjct: 214 LETRGIYEIARFGMFF--GADQKTFMGLAGIGDLMVTCNSRYSRNRRFGELIAR-GFNPL 270
Query: 249 DLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQQFIDA 304
L + Q ++G FT V + K ++ P+ V+++ P Q +
Sbjct: 271 KLLESS--NQVVEGAFTVKAVMKIAKENKID--MPISEEVYRVVYEGKPPLQSMRD 322
Score = 119 bits (300), Expect = 4e-30
Identities = 55/157 (35%), Positives = 77/157 (49%), Gaps = 13/157 (8%)
Query: 329 SH---VAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACG 385
SH VA++ T+ ++ L + T FRV +DV VEI GALKN++A
Sbjct: 141 SHAEEVAKKLPTAVTLAGENSKE---LQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIA 197
Query: 386 AGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYG--GR 443
AG +DG G DN KAA+ G+ E+ +F F GA TF G+ DL+ TC R
Sbjct: 198 AGILDGFGGWDNAKAALETRGIYEIARFGMFF--GADQKTFMGLAGIGDLMVTCNSRYSR 255
Query: 444 NRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEV 480
NR+ E + G + L + Q ++G FT V
Sbjct: 256 NRRFGELIAR-GFNPLKLLESS--NQVVEGAFTVKAV 289
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific
opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter
SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 66.2 bits (161), Expect = 4e-12
Identities = 34/244 (13%), Positives = 66/244 (27%), Gaps = 32/244 (13%)
Query: 17 INETHENVKYLPGHKLPPNVVAV-PDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPD 75
I + + PG + + D+ A KDAD+++ VVP + + + I
Sbjct: 43 IQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISEG 102
Query: 76 AVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGAN-------LAGEV-AEEKFCE 127
+ + L G GG ++ + + G+V
Sbjct: 103 QL-IILNPGA---TGGALEFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGA 158
Query: 128 TTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEI---------CGALKNIVACGAGFV 178
C + + + V++V + L N C +G
Sbjct: 159 MDFACLPAAKAGWALEQIGSVLPQYVAVENVLHTSLTNVNAVMHPLPTLLNAARCESGTP 218
Query: 179 DGLGLGDNTK--AAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKV 236
L T ++ E + + F + + YG +
Sbjct: 219 FQYYLEGITPSVGSLAEKVDAERIAIAKAF--DLNVPSVC------EWYKESYGQSPATI 270
Query: 237 SEAF 240
EA
Sbjct: 271 YEAV 274
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 53.6 bits (128), Expect = 3e-08
Identities = 24/197 (12%), Positives = 49/197 (24%), Gaps = 20/197 (10%)
Query: 9 DGKKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQL 68
D K V + + A A+++V + +
Sbjct: 51 DPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAELVVNATEGASSIAALTAA 110
Query: 69 LGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANLAGEVAEEKFCET 128
+ + + + D + G L + +L ++
Sbjct: 111 GAENLAGKILVDIANPLDFSHGMPPTL-------------NPVNTDSLGEQIQRTFPEAK 157
Query: 129 TIGCKDKTLGPLLHALLQTPNFRVSVV---DDVDAVEICGALKNIVACGAGFVDGLGLGD 185
+ + L+ + SV +D A L G D + LGD
Sbjct: 158 VVKTLNTMNASLMVDPGRAAGGDHSVFVSGNDAAAKAEVATL----LKSLGHQDVIDLGD 213
Query: 186 NTKAAVIRLGLMEMVKF 202
T A + L ++
Sbjct: 214 ITTARGAEMLLPVWIRL 230
Score = 36.2 bits (83), Expect = 0.013
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 367 DDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKF 413
+D A L G D + LGD T A + L ++
Sbjct: 188 NDAAAKAEVATL----LKSLGHQDVIDLGDITTARGAEMLLPVWIRL 230
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 2e-07
Identities = 78/491 (15%), Positives = 134/491 (27%), Gaps = 154/491 (31%)
Query: 18 NETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILV---FVVPHQFIVRLCSQLLGKIKP 74
N+ H L +V ++++ A I+ F S L +
Sbjct: 99 NDIHALAAKLLQEN-DTTLVKTKELIKNYITARIMAKRPFDKKSN------SALFRAVGE 151
Query: 75 DAVGLSLIKGFDRAEGG-GI---------DL--ISHIITRNLKIKMTVLMGANLAGEVAE 122
L I F GG G DL H++ +L + + +
Sbjct: 152 GNAQLVAI--F----GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 123 EKFCETTIGC------KDKTLGP----LLHA--------LLQTPNFRVS-VVDDVDAVEI 163
EK G ++ + P LL ++Q ++ V+ + E+
Sbjct: 206 EKVFTQ--GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 164 CGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSAT---FFESCG 220
LK G V AV + E F+ + A FF G
Sbjct: 264 RSYLKGATGHSQGLV----------TAVA----IAETDSWESFFVSVRKAITVLFF--IG 307
Query: 221 VADLITTCYGGRNRKVSEAFVKTGK-------SIKDLEDEMLNGQKLQGPFTADEVNYML 273
V + E ++ + SI +L E + Q ++ N L
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV--QDY-----VNKTNSHL 360
Query: 274 KN--------KNMENKF-----P-----LFTAVHKICIG-----------EMKPQ---QF 301
N P L + K E K + +F
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 302 --IDAIREHPDHKVSTAQKEAVLISSL--TSSHVAEEKFCETTIGCKDKTLG-PLLHAL- 355
+ + P H S L +S + + + + K + P+
Sbjct: 421 LPVAS----PFH------------SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Query: 356 ---LQTPNFRV--SVVDDV-------DAVEICGALKNIVACGAGFVDGLG-----LGDNT 398
L+ + + +VD + + A I+ G G GLG D T
Sbjct: 465 GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH-ILDFGPGGASGLGVLTHRNKDGT 523
Query: 399 KAAVIRLGLME 409
VI G ++
Sbjct: 524 GVRVIVAGTLD 534
Score = 48.9 bits (116), Expect = 3e-06
Identities = 52/293 (17%), Positives = 82/293 (27%), Gaps = 108/293 (36%)
Query: 66 SQLLGKIKPDAVGLSLIKG-------FDRA-----EGGGIDLISHIITRNLKIKMTVLMG 113
SQ G +G+ L K ++RA + G I I+ N +T+ G
Sbjct: 1626 SQEQG------MGMDLYKTSKAAQDVWNRADNHFKDTYGFS-ILDIVINNPV-NLTIHFG 1677
Query: 114 A-----------------NLAGEVAEEK-FCETTIGCKDKTL-GP--LLHALLQTPN--- 149
+ G++ EK F E T LL T
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS---ATQFTQP 1734
Query: 150 --FRVSV----------VDDVDAVEICG-------ALKNIVACGAG---FVDGLGL---- 183
+ + DA G AL A A + +
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADAT-FAGHSLGEYAAL----ASLADVMSIESLVEVVFYR 1789
Query: 184 GDNTKAAVIR----LGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKVSEA 239
G + AV R M+ PG +A+F + + G R + E
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAIN----PGRVAASFSQE--ALQYVVERVGKRTGWLVEI 1843
Query: 240 ---------FVKTGKSIKDLED--EMLNG--------QKLQGPFTADEVNYML 273
+V G ++ L+ +LN +LQ + +EV L
Sbjct: 1844 VNYNVENQQYVAAGD-LRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 40.4 bits (94), Expect = 0.001
Identities = 45/229 (19%), Positives = 74/229 (32%), Gaps = 69/229 (30%)
Query: 7 M--IDG---KKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILV-----FVV 56
M I +++ + +N+T N +LP K VE + LV VV
Sbjct: 338 MLSISNLTQEQVQDYVNKT--N-SHLPAGK----------QVEIS-----LVNGAKNLVV 379
Query: 57 --PHQFIVRLCSQLLGKIK-PDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTV--- 110
P Q + L L K K P + S I +R R L +
Sbjct: 380 SGPPQSLYGLNLTLR-KAKAPSGLDQSRIPFSERK--------LKFSNRFLPV--ASPFH 428
Query: 111 --LMGANLAGEVAEEKFCETTIGCKDKTLG-PLLHAL----LQTPNFRV--SVVDDV--- 158
L+ A ++ + + + K + P+ L+ + + +VD +
Sbjct: 429 SHLLVP--ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL 486
Query: 159 ----DAVEICGALKNIVACGAGFVDGLG-----LGDNTKAAVIRLGLME 198
+ A I+ G G GLG D T VI G ++
Sbjct: 487 PVKWETTTQFKATH-ILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLD 534
Score = 39.3 bits (91), Expect = 0.003
Identities = 55/347 (15%), Positives = 88/347 (25%), Gaps = 141/347 (40%)
Query: 197 MEMVKFTELF--YPGAKSATFFESCGVADLITTCYGGRNRKVSEAFVKTGKSIKDLEDEM 254
M M +L+ A+ + AD + + G SI D+
Sbjct: 1631 MGM----DLYKTSKAAQDV--WNR---AD----------NHFKDTY---GFSILDIVIN- 1667
Query: 255 LNGQKLQGPFTADE-----VNYMLKNKNMENKFPLFTAVHKICIGEMKPQQFIDAIREHP 309
N L F ++ NY M I G++K ++ I EH
Sbjct: 1668 -NPVNLTIHFGGEKGKRIRENYS----AM--------IFETIVDGKLKTEKIFKEINEH- 1713
Query: 310 DHKVSTAQKEAVLISSLTSSHVAEEKFCETTIGCKDKTLGPLLHALLQTPN-----FRVS 364
+S T L T +
Sbjct: 1714 -------------STSYTFRSEKGL--------------------LSATQFTQPALTLME 1740
Query: 365 V----------VDDVDAVEICG-------ALKNIVACGAG---FVDGLGL----GDNTKA 400
+ DA G AL A A + + G +
Sbjct: 1741 KAAFEDLKSKGLIPADAT-FAGHSLGEYAAL----ASLADVMSIESLVEVVFYRGMTMQV 1795
Query: 401 AVIR----LGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKVSEA------ 450
AV R M+ PG +A+F + + G R + E
Sbjct: 1796 AVPRDELGRSNYGMIAIN----PGRVAASFSQE--ALQYVVERVGKRTGWLVEIVNYNVE 1849
Query: 451 ---FVKTGKSIKDLED--EMLNG--------QKLQGPFTADEVNYML 484
+V G ++ L+ +LN +LQ + +EV L
Sbjct: 1850 NQQYVAAGD-LRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 3e-07
Identities = 54/390 (13%), Positives = 123/390 (31%), Gaps = 116/390 (29%)
Query: 119 EVAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFV 178
E E ++ KD +L F VD+ D ++ K+I++ +
Sbjct: 10 ETGEHQYQ-----YKD-----ILSVFE--DAF----VDNFDCKDVQDMPKSILSKEE--I 51
Query: 179 DGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKVSE 238
D + + + + +RL F L + F V +++ Y
Sbjct: 52 DHIIMSKDAVSGTLRL-------FWTLLSKQEEMVQKF----VEEVLRINYK-------- 92
Query: 239 AFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVH--------- 289
F+ + IK + + P + Y+ + + N +F +
Sbjct: 93 -FLMS--PIKT---------EQRQP-SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 290 -KICIGEMKPQQFIDAIREHPDHKVSTAQKEAVLISSLTSSHVAEEKFCET----TIGCK 344
+ + E++P + + I V + K + + S+ + K +
Sbjct: 140 LRQALLELRPAKNV-LI-----DGVLGSGK-TWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 345 DKT------LGPLLHAL----LQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGL 394
+ L LL+ + + ++ + +++ L+ ++ + + L +
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLLK-SKPYENCLLV 249
Query: 395 GDNTKAAVIRLGLMEMVKFTELFYPGAKSATFFESCGVADLITTCYGGRNRKVSEAFVKT 454
N V+ + + F SC + L+TT R ++V++
Sbjct: 250 LLN-------------VQNAKAW------NAFNLSCKI--LLTT----RFKQVTDFLSAA 284
Query: 455 GKSIKDLEDEMLNGQKLQGPFTADEVNYML 484
+ L+ T DEV +L
Sbjct: 285 TTTHISLDHH-------SMTLTPDEVKSLL 307
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 42.1 bits (98), Expect = 3e-04
Identities = 12/112 (10%), Positives = 29/112 (25%), Gaps = 15/112 (13%)
Query: 15 EIINETHENVKYLPGHKLP---------PNVVAVPDVVEAAKDADILVFVVPHQFIVRLC 65
E + + V D A AD+++ VP
Sbjct: 40 ERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISGADVVILTVPAFAHEGYF 99
Query: 66 SQLLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANLA 117
+ ++ A+ + + G + I + ++++ L
Sbjct: 100 QAMAPYVQDSAL-IVGLPSQ-----AGFEFQCRDILGDKAAAVSMMSFETLP 145
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 38.9 bits (90), Expect = 0.002
Identities = 9/45 (20%), Positives = 23/45 (51%)
Query: 37 VAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSL 81
+ + D +AD++V +P I ++ ++ +++P + L L
Sbjct: 56 IPLTDGDGWIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVLIL 100
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.13
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 7/35 (20%)
Query: 245 KSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNME 279
+++K L+ + KL D + ME
Sbjct: 20 QALKKLQASL----KLYAD---DSAPALAIKATME 47
Score = 32.6 bits (73), Expect = 0.13
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 7/35 (20%)
Query: 456 KSIKDLEDEMLNGQKLQGPFTADEVNYMLKNKNME 490
+++K L+ + KL D + ME
Sbjct: 20 QALKKLQASL----KLYAD---DSAPALAIKATME 47
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP,
oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo
sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Length = 322
Score = 32.2 bits (74), Expect = 0.33
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 36 VVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKG 84
V P E + +D+L V I + ++ I+ + +S G
Sbjct: 72 VKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAG 120
>2o2z_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus
halodurans} PDB: 2hzb_A
Length = 323
Score = 32.2 bits (73), Expect = 0.35
Identities = 15/68 (22%), Positives = 27/68 (39%)
Query: 6 EMIDGKKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLC 65
EM DG +T + K P + + + +EA + AD++V + L
Sbjct: 136 EMEDGTIVTGESSIPKAGKKIKRVFLTPKDTKPLREGLEAIRKADVIVIGPGSLYTSVLP 195
Query: 66 SQLLGKIK 73
+ L+ I
Sbjct: 196 NLLVPGIC 203
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2,
protein structure initiative, no structural genomics
consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Length = 247
Score = 31.7 bits (73), Expect = 0.37
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 35 NVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKG 84
+ D E AK+ADIL+ + + +++ IK DA+ +++ G
Sbjct: 50 GLTTTTDNNEVAKNADILILSIKPDLYASIINEIKEIIKNDAIIVTIAAG 99
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 31.3 bits (71), Expect = 0.69
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 36 VVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAV 77
V V E A + D++ +V Q + + Q + A+
Sbjct: 71 VSCKASVAEVAGECDVIFSLVTAQAALEVAQQAGPHLCEGAL 112
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis,
oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Length = 280
Score = 30.9 bits (71), Expect = 0.80
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 35 NVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAV 77
V D + A +AD++V V I +C +L + +
Sbjct: 50 GVHTTQDNRQGALNADVVVLAVKPHQIKMVCEELKDILSETKI 92
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase,
proline biosynthesis, NAD(P protein, rossmann fold,
doain swapping; HET: NAP; 2.15A {Streptococcus
pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Length = 259
Score = 30.6 bits (70), Expect = 1.1
Identities = 6/51 (11%), Positives = 16/51 (31%), Gaps = 6/51 (11%)
Query: 35 NVVAVPDVVEAAKDADILVFVV-PHQFIVRLCSQLLGKIKPDAVGLSLIKG 84
+ + D+++ + P F +L + +S+ G
Sbjct: 47 ALPYAMSHQDLIDQVDLVILGIKPQLF-----ETVLKPLHFKQPIISMAAG 92
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA
crystallography structure, oxidoreductase; HET: OMT
NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 30.6 bits (70), Expect = 1.1
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 44 EAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAV 77
+ A I+ P Q I+ +L+ + P A+
Sbjct: 53 SLLQTAKIIFLCTPIQLILPTLEKLIPHLSPTAI 86
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 30.7 bits (69), Expect = 1.1
Identities = 4/43 (9%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 35 NVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAV 77
+ + +D D+ + +P + +L ++
Sbjct: 200 EPFHISKAAQELRDVDVCINTIPALVVTA---NVLAEMPSHTF 239
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain;
coiled coil, actin, troponin, cytoskeleton,
cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB:
2z5h_A 1kql_A 1mv4_A 2g9j_C
Length = 52
Score = 27.8 bits (61), Expect = 1.1
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 232 RNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKN 275
+N + + K + DLEDE+ QKL+ ++E+++ L +
Sbjct: 6 KNYHLENEVARLKKLVDDLEDELYA-QKLKYKAISEELDHALND 48
Score = 27.8 bits (61), Expect = 1.1
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 443 RNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKN 486
+N + + K + DLEDE+ QKL+ ++E+++ L +
Sbjct: 6 KNYHLENEVARLKKLVDDLEDELYA-QKLKYKAISEELDHALND 48
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus
pneumoniae}
Length = 326
Score = 30.0 bits (67), Expect = 1.5
Identities = 11/81 (13%), Positives = 25/81 (30%), Gaps = 8/81 (9%)
Query: 26 YLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIK-- 83
Y+ +A VV+ ++D++V P + ++ A+ + +
Sbjct: 162 YVTNALNDDTPLASRRVVQTILESDMIVL-GPGSLFTSILPNIVIXEIGRALLETXAEIA 220
Query: 84 -----GFDRAEGGGIDLISHI 99
R E H+
Sbjct: 221 YVCNIMTQRGETEHFTDSDHV 241
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA
modification enzyme, guanine 26, N(2),N(2)-dimethyltran
structural genomics; 1.90A {Pyrococcus horikoshii} SCOP:
c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Length = 378
Score = 30.2 bits (67), Expect = 1.8
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 248 KDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKIC----IGEMKPQQFID 303
+ + +M+ + + +LK + E PLF H I I K ++ I
Sbjct: 284 EKIVSKMVKEAESLSLARKKQALKLLKMIDQELDIPLFYDTHAIGRRLKIETKKVEEIIS 343
Query: 304 AIREHPDHKVS 314
A+RE ++ +
Sbjct: 344 ALREQ-GYEAT 353
>4ezb_A Uncharacterized conserved protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.10A {Sinorhizobium meliloti}
Length = 317
Score = 29.5 bits (66), Expect = 2.1
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 37 VAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAV 77
V D V AD+++ +V + + + +AV
Sbjct: 76 VEPLDDVAGIACADVVLSLVVGAATKAVAASAAPHLSDEAV 116
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics,
TM0231, JCSG, PSI, protein structure initiative; 2.30A
{Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Length = 469
Score = 29.0 bits (66), Expect = 3.6
Identities = 6/48 (12%), Positives = 18/48 (37%), Gaps = 7/48 (14%)
Query: 8 IDGKKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFV 55
I GK + + + + ++ + V+ + + + +FV
Sbjct: 398 ISGKMIWDSLKSLGKEAYFVEKLP------ELEKVI-SVSENTVFLFV 438
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural
genomics, joint CENT structural genomics, JCSG; 2.00A
{Staphylococcus epidermidis}
Length = 332
Score = 29.1 bits (65), Expect = 3.6
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 32 LPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIK 73
P +V + + +EA + AD++V + + + + I
Sbjct: 161 EPSDVEPMNEAIEALEQADLIVLGPGSLYTSVISNLCVKGIS 202
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 28.9 bits (65), Expect = 3.9
Identities = 5/34 (14%), Positives = 14/34 (41%)
Query: 44 EAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAV 77
+AD+++ VP + +L + + +
Sbjct: 61 SILANADVVIVSVPINLTLETIERLKPYLTENML 94
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural
genomics, protein structure initiative; 2.40A
{Methanosarcina mazei GO1}
Length = 478
Score = 28.8 bits (65), Expect = 5.1
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 34 PNVVAVPDVVEAAKDADILVFVVPHQ 59
P V ++ E ++AD +V + H
Sbjct: 400 PGVEISDNLEEVVRNADAIVVLAGHS 425
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 28.5 bits (64), Expect = 7.1
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 10/44 (22%)
Query: 21 HENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRL 64
EN+ Y G VV+ ++V AAK+A+I HQFI L
Sbjct: 1124 AENIAY--G--DNSRVVSYEEIVRAAKEANI------HQFIDSL 1157
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL;
1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A*
6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A*
2wrz_A
Length = 306
Score = 27.8 bits (62), Expect = 7.5
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 33 PPNVVAVPDVVEAAKDADILVFVV 56
P+ +V A+ D+ V V
Sbjct: 65 TPDPKLGSAIVAKARGYDMKVIAV 88
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase
nucleotide binding, ATP-binding, magnesium,
metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga
mimivirus} PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A*
3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A*
2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A*
3gpa_A* ...
Length = 146
Score = 27.1 bits (61), Expect = 9.2
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 13/51 (25%)
Query: 72 IKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKI---KMTVLMGANLAGE 119
IKPDA SL+ I + I +N KI K NL +
Sbjct: 13 IKPDAFERSLV--------AEI--MGRIEKKNFKIVSMKFWSKAPRNLIEQ 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.399
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,570,236
Number of extensions: 478363
Number of successful extensions: 1115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1086
Number of HSP's successfully gapped: 57
Length of query: 492
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 395
Effective length of database: 3,993,456
Effective search space: 1577415120
Effective search space used: 1577415120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)