RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14065
(492 letters)
>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase
{Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Length = 160
Score = 118 bits (297), Expect = 4e-32
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 5/153 (3%)
Query: 157 DVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFF 216
D E+ A+KN++A G+G +GLG+G N +AA+I GL+E+ T G + F
Sbjct: 2 DTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTA--ALGGDGSAVF 59
Query: 217 ESCGVADLITTCYGGRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNK 276
G+ DL TC +R + K GK + E + + +G TAD + + K
Sbjct: 60 GLAGLGDLQLTCSSELSRNFTVGK-KLGKGLPIEEIQRTSKAVAEGVATADPLMRLAKQL 118
Query: 277 NMENKFPLFTAVHKICIGEMKPQQFIDAIREHP 309
++ PL +++I + P+ + +
Sbjct: 119 KVK--MPLCHQIYEIVYKKKNPRDALADLLSCG 149
Score = 97.4 bits (242), Expect = 1e-24
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 368 DVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLMEMVKFTELFYPGAKSATFF 427
D E+ A+KN++A G+G +GLG+G N +AA+I GL+E+ T G + F
Sbjct: 2 DTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTA--ALGGDGSAVF 59
Query: 428 ESCGVADLITTCYGGRNRKVSEAFVKTGKSIKDLEDEMLNGQKLQGPFTADEVNYMLKNK 487
G+ DL TC +R + K GK + E + + +G TAD + + K
Sbjct: 60 GLAGLGDLQLTCSSELSRNFTVGK-KLGKGLPIEEIQRTSKAVAEGVATADPLMRLAKQL 118
Query: 488 NME 490
++
Sbjct: 119 KVK 121
>d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 155
Score = 103 bits (259), Expect = 7e-27
Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 10/155 (6%)
Query: 157 DVDAVEICGALKNIVACGAGFVDGLGLGDN-----TKAAVIRLGLMEMVKFTELFYPGAK 211
D+ EI ALKN+ + ++ G N K + + EM + E+
Sbjct: 1 DIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILG--GD 58
Query: 212 SATFFESCGVADLITTCYGGRNRKVSEAFVKTGKSIKDLEDEMLNGQKL-QGPFTADEVN 270
T F G DLI T GGRN + E K + +E+ G + +G TA++
Sbjct: 59 RETAFGLSGFGDLIATFRGGRNGMLGELLGKGLSIDEAMEELERRGVGVVEGYKTAEKAY 118
Query: 271 YMLKNKNMENKFPLFTAVHKICIGEMKPQQFIDAI 305
+ N + L +++++ +K ++ + +
Sbjct: 119 RLSSKINAD--TKLLDSIYRVLYEGLKVEEVLFEL 151
Score = 85.5 bits (211), Expect = 2e-20
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 8/129 (6%)
Query: 368 DVDAVEICGALKNIVACGAGFVDGLGLGDN-----TKAAVIRLGLMEMVKFTELFYPGAK 422
D+ EI ALKN+ + ++ G N K + + EM + E+
Sbjct: 1 DIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILG--GD 58
Query: 423 SATFFESCGVADLITTCYGGRNRKVSEAFVKTGKSIKDLEDEMLNGQKL-QGPFTADEVN 481
T F G DLI T GGRN + E K + +E+ G + +G TA++
Sbjct: 59 RETAFGLSGFGDLIATFRGGRNGMLGELLGKGLSIDEAMEELERRGVGVVEGYKTAEKAY 118
Query: 482 YMLKNKNME 490
+ N +
Sbjct: 119 RLSSKINAD 127
>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase
{Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Length = 189
Score = 76.0 bits (186), Expect = 1e-16
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 9/149 (6%)
Query: 11 KKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLG 70
++ ++NE ENV +L G +L N+ DV +A A+I++FV+P QF+ + G
Sbjct: 40 EEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGG 99
Query: 71 K-----IKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANLAGEVAEEKF 125
+ L KG +R I ++VL G + A EVA F
Sbjct: 100 NLIAYAKEKQVPVLVCTKGIER--STLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVF 157
Query: 126 CETTIGCKDKTLGPLLHALLQT--PNFRV 152
+I D + L ++ T +F
Sbjct: 158 TCVSIASADINVARRLQRIMSTGDRSFVC 186
Score = 36.7 bits (84), Expect = 0.003
Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 9/101 (8%)
Query: 265 TADEVNYMLKNKNMENKFPLFTAVHKICIGEMKPQQFIDAIREHPDHKVSTAQKEAVLIS 324
++ L E + P+ I +K + + +VL
Sbjct: 93 FFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPA-------EIIGEFLPSPLLSVLAG 145
Query: 325 SLTSSHVAEEKFCETTIGCKDKTLGPLLHALLQT--PNFRV 363
+ VA F +I D + L ++ T +F
Sbjct: 146 PSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRSFVC 186
>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 180
Score = 47.4 bits (111), Expect = 7e-07
Identities = 18/139 (12%), Positives = 47/139 (33%), Gaps = 1/139 (0%)
Query: 17 INETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDA 76
L + + + ++A++++ V ++ + S++L +K
Sbjct: 40 SISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVSTDGVLPVMSRILPYLKDQY 99
Query: 77 VGLSLIKGFDRAEGGGIDLIS-HIITRNLKIKMTVLMGANLAGEVAEEKFCETTIGCKDK 135
+ L D + + +L+ + + G +A EVA+ +
Sbjct: 100 IVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSSPSE 159
Query: 136 TLGPLLHALLQTPNFRVSV 154
+ + + +T F V V
Sbjct: 160 SSANKMKEIFETEYFGVEV 178
Score = 38.5 bits (88), Expect = 7e-04
Identities = 8/90 (8%), Positives = 20/90 (22%)
Query: 276 KNMENKFPLFTAVHKICIGEMKPQQFIDAIREHPDHKVSTAQKEAVLISSLTSSHVAEEK 335
+ V + K ++ + + VA+
Sbjct: 89 SRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRM 148
Query: 336 FCETTIGCKDKTLGPLLHALLQTPNFRVSV 365
++ + + +T F V V
Sbjct: 149 PTTVVFSSPSESSANKMKEIFETEYFGVEV 178
>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 212
Score = 37.0 bits (84), Expect = 0.002
Identities = 14/173 (8%), Positives = 48/173 (27%), Gaps = 4/173 (2%)
Query: 15 EIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKP 74
E + + N A A + + + + + +
Sbjct: 38 EAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPL 97
Query: 75 DAVGLSLIKGFDRAEGGGIDLISHIITRNLKIK-MTVLMGANLAGEVAEEKFCETTIGCK 133
V +E ++++ ++ + + + A A + + G
Sbjct: 98 VPVSRGAKGFTYSSERSAAEIVAEVLESEKVVSALHTIPAARFANLDEKFDWDVPVCGDD 157
Query: 134 DKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDN 186
D++ ++ + + R D + ++++ + G+G+
Sbjct: 158 DESKKVVMSLISEIDGLRPL---DAGPLSNSRLVESLTPLILNIMRFNGMGEL 207
Score = 29.3 bits (64), Expect = 0.92
Identities = 6/67 (8%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 331 VAEEKFCETTIGCKDKTLGPLLHALLQTPNFRVSVVDDVDAVEICGALKNIVACGAGFVD 390
+ + G D++ ++ + + R D + ++++ +
Sbjct: 144 DEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPL---DAGPLSNSRLVESLTPLILNIMR 200
Query: 391 GLGLGDN 397
G+G+
Sbjct: 201 FNGMGEL 207
>d1vjta1 c.2.1.5 (A:-1-191) Putative alpha-glucosidase TM0752
{Thermotoga maritima [TaxId: 2336]}
Length = 193
Score = 30.5 bits (68), Expect = 0.27
Identities = 16/145 (11%), Positives = 41/145 (28%), Gaps = 6/145 (4%)
Query: 8 IDGKKLTEIINETHENVKYLPGHKLPPNVVAVPDVVEAAKDADILVFVVPHQFIVRLCSQ 67
+ ++L KY+ P +V + EA AD ++ R
Sbjct: 41 VHERRLNAS---YILARKYVEELNSPVKIVKTSSLDEAIDGADFIINTAYPYDP-RYH-D 95
Query: 68 LLGKIKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKIKMTVLMGANLAGEVAEEKFCE 127
+ + + G+ R + T L + + +A ++ +
Sbjct: 96 SGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDMKLALEIAEKMKKMAPKA 155
Query: 128 TTIGCKDKTLGPLLHALLQTPNFRV 152
+ + + A+ + +
Sbjct: 156 YLMQTANPV-FEITQAVRRWTGANI 179
>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin
hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii
[TaxId: 2190]}
Length = 242
Score = 28.8 bits (64), Expect = 1.1
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 11 KKLTEIINETHENVKYLP---GHKLPP---NVVAVPDVVEAAKDADILVFVVPHQFIVR- 63
K+ E++ + + P H + P + D EA + ADI++ +P
Sbjct: 98 PKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPD 157
Query: 64 LCSQLLGKIKPDAV 77
+ + I A+
Sbjct: 158 IIKKFADAIPEGAI 171
>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 382
Score = 28.9 bits (63), Expect = 1.4
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 152 VSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLM 197
++ V D ++ LK+ G V G+ + IR+G M
Sbjct: 316 LTAVYVADPPDVIAFLKS-----HGVVIAGGIHKDIGPKYIRIGHM 356
Score = 28.9 bits (63), Expect = 1.4
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 363 VSVVDDVDAVEICGALKNIVACGAGFVDGLGLGDNTKAAVIRLGLM 408
++ V D ++ LK+ G V G+ + IR+G M
Sbjct: 316 LTAVYVADPPDVIAFLKS-----HGVVIAGGIHKDIGPKYIRIGHM 356
>d2fywa1 c.135.1.1 (A:1-265) Hypothetical protein SP1609
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 265
Score = 28.5 bits (63), Expect = 1.6
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 10/75 (13%)
Query: 36 VVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKG----------F 85
+ + V A + + + +V H I R LL + + + LIK
Sbjct: 43 LDIREETVAEAIEKGVDLIIVKHAPIFRPIKDLLASRPQNQIYIDLIKHDIAVYVSHTNI 102
Query: 86 DRAEGGGIDLISHII 100
D E G D ++
Sbjct: 103 DIVENGLNDWFCQML 117
>d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus
cereus [TaxId: 1396]}
Length = 370
Score = 28.5 bits (63), Expect = 1.9
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 36 VVAVPDVVEAAKDADILVFVVPHQFIVRLCSQLLGKIKPDAVGLSLIKG----------F 85
+ +VV+ A V + H I + + IK
Sbjct: 44 LDVTEEVVDEAIQLGANVIIAHHPLIFNPLKAIHTDKAYGKIIEKCIKNDIAIYAAHTNV 103
Query: 86 DRAEGGGIDLISHII 100
D A+GG DL++ +
Sbjct: 104 DVAKGGVNDLLAEAL 118
>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK
{Mimivirus [TaxId: 315393]}
Length = 128
Score = 27.3 bits (60), Expect = 2.1
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 13/57 (22%)
Query: 72 IKPDAVGLSLIKGFDRAEGGGIDLISHIITRNLKI---KMTVLMGANLAGEVAEEKF 125
IKPDA SL+ I + I +N KI K NL + +E
Sbjct: 7 IKPDAFERSLV--------AEI--MGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHS 53
>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA
methyltransferase Trm1 {Pyrococcus horikoshii [TaxId:
53953]}
Length = 375
Score = 28.4 bits (63), Expect = 2.2
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 248 KDLEDEMLNGQKLQGPFTADEVNYMLKNKNMENKFPLFTAVHKIC----IGEMKPQQFID 303
+ + +M+ + + +LK + E PLF H I I K ++ I
Sbjct: 282 EKIVSKMVKEAESLSLARKKQALKLLKMIDQELDIPLFYDTHAIGRRLKIETKKVEEIIS 341
Query: 304 AIREHPDHKVS 314
A+RE ++ +
Sbjct: 342 ALREQ-GYEAT 351
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.399
Gapped
Lambda K H
0.267 0.0660 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,794,916
Number of extensions: 84315
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 20
Length of query: 492
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 403
Effective length of database: 1,185,626
Effective search space: 477807278
Effective search space used: 477807278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)