Query psy14070
Match_columns 111
No_of_seqs 74 out of 76
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 18:48:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3699|consensus 99.9 2E-24 4.3E-29 189.2 2.9 87 1-105 278-364 (598)
2 KOG2541|consensus 30.8 24 0.00053 29.9 1.0 54 19-72 215-281 (296)
3 PF09722 DUF2384: Protein of u 27.9 16 0.00034 22.2 -0.5 10 74-83 15-24 (54)
4 PRK09689 prophage protein NinE 26.3 38 0.00081 22.4 1.1 15 4-18 10-24 (56)
5 cd04030 C2C_KIAA1228 C2 domain 25.4 67 0.0015 21.5 2.3 28 77-104 34-61 (127)
6 cd08381 C2B_PI3K_class_II C2 d 23.5 68 0.0015 22.1 2.0 30 77-106 30-59 (122)
7 cd04029 C2A_SLP-4_5 C2 domain 21.6 1.5E+02 0.0032 20.5 3.4 30 75-104 32-61 (125)
8 cd08393 C2A_SLP-1_2 C2 domain 20.6 95 0.0021 21.3 2.3 28 78-105 35-62 (125)
9 cd04031 C2A_RIM1alpha C2 domai 19.6 1E+02 0.0022 20.5 2.2 28 77-104 34-61 (125)
10 TIGR02293 TAS_TIGR02293 putati 17.7 38 0.00082 24.4 -0.3 10 74-83 92-101 (133)
No 1
>KOG3699|consensus
Probab=99.89 E-value=2e-24 Score=189.25 Aligned_cols=87 Identities=32% Similarity=0.637 Sum_probs=78.5
Q ss_pred CCccccccccccccCCCCCCCCceeeCCccccccccccchhhhccccccccccccccccCCCccccccccccCcccccCC
Q psy14070 1 GFRTGYIYRTPLIKGDPPRPRNDVEVPPAVSSLGYLLEEEEMYRNGWKGRKSNDRTRWLNSPNVWKGRKSNDRTRWLNSP 80 (111)
Q Consensus 1 GyRTGY~YR~P~lr~ek~r~~sDVEiPptvss~~~~~e~d~~~~~~~k~~~~~~~t~~lns~~~~~~Rqq~ektRWLNSP 80 (111)
||||||+||+|+++ ++++++|||||||++++|+|.+|+. +.++++++ .++|++|+|||||+|
T Consensus 278 ~~rtg~~yR~p~~~-~k~~~~sdV~~P~~v~~~~~~~d~~--~v~~~r~~---------------~~~~~~e~tRwlNsp 339 (598)
T KOG3699|consen 278 GYRTGYNYRHPALR-EKPSKKSDVEIPATVTAFGFATDGA--PVSPLRQA---------------PQKQQREKTRWLNLP 339 (598)
T ss_pred cccccccccchhhc-ccCCCccceecchhhhhhhhhccCC--cCChhhhc---------------cchhhhhhhhhcCCc
Confidence 89999999999998 9999999999999999998666654 45666665 389999999999999
Q ss_pred CcceeeeeeccCCCCCccccEEEEe
Q psy14070 81 NVYQKVEILETGTSDPKKITKVETL 105 (111)
Q Consensus 81 N~Y~kv~v~e~g~~sPK~~TkW~~~ 105 (111)
|.|++++.+|.++.+||++|+|+.+
T Consensus 340 n~~~~~~~~e~~~~npka~t~w~~~ 364 (598)
T KOG3699|consen 340 NKVDEVDEEERGMRNPKAKTTWVKE 364 (598)
T ss_pred cccccccHHhhccCCcccceeeeec
Confidence 9999999999999999999999984
No 2
>KOG2541|consensus
Probab=30.81 E-value=24 Score=29.94 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=39.7
Q ss_pred CCCCceeeCCccccccccccchh----------hh---ccccccccccccccccCCCcccccccccc
Q psy14070 19 RPRNDVEVPPAVSSLGYLLEEEE----------MY---RNGWKGRKSNDRTRWLNSPNVWKGRKSND 72 (111)
Q Consensus 19 r~~sDVEiPptvss~~~~~e~d~----------~~---~~~~k~~~~~~~t~~lns~~~~~~Rqq~e 72 (111)
=..+||-+|.-.|-|||+.|++. ++ .-++|.++.+-|..+++-|-.|.+.-+.+
T Consensus 215 f~~D~vi~P~~SSwFGfY~dg~~~~vLp~qet~LYteD~iGLKtL~~aGkv~fv~v~G~Hl~~~~~d 281 (296)
T KOG2541|consen 215 FENDTVITPKQSSWFGFYPDGEFTTVLPMQETKLYTEDWIGLKTLDEAGKVKFVSVPGDHLQIWHED 281 (296)
T ss_pred cCCCCEeccCcccceeeecCCCcccccChhhcccccccccchHHHHhCCCEEEeccCCceeeeehhh
Confidence 35789999999999999888773 11 12566677777888888888888755443
No 3
>PF09722 DUF2384: Protein of unknown function (DUF2384); InterPro: IPR024467 This domain is found predominantly in proteobacterial proteins. Its function in unknown.
Probab=27.93 E-value=16 Score=22.20 Aligned_cols=10 Identities=50% Similarity=1.062 Sum_probs=7.9
Q ss_pred cccccCCCcc
Q psy14070 74 TRWLNSPNVY 83 (111)
Q Consensus 74 tRWLNSPN~Y 83 (111)
-+||++||..
T Consensus 15 ~~Wl~~p~~~ 24 (54)
T PF09722_consen 15 RRWLRTPNPA 24 (54)
T ss_pred HHHHHChHHH
Confidence 3699999874
No 4
>PRK09689 prophage protein NinE; Provisional
Probab=26.29 E-value=38 Score=22.39 Aligned_cols=15 Identities=40% Similarity=0.709 Sum_probs=12.0
Q ss_pred cccccccccccCCCC
Q psy14070 4 TGYIYRTPLIKGDPP 18 (111)
Q Consensus 4 TGY~YR~P~lr~ek~ 18 (111)
||+|||-|+-+..||
T Consensus 10 ~~~ifrvparrkrKP 24 (56)
T PRK09689 10 NGHIYRVPNRRKRKP 24 (56)
T ss_pred hCceeecccccCCCC
Confidence 789999999885444
No 5
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=25.39 E-value=67 Score=21.46 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=20.4
Q ss_pred ccCCCcceeeeeeccCCCCCccccEEEE
Q psy14070 77 LNSPNVYQKVEILETGTSDPKKITKVET 104 (111)
Q Consensus 77 LNSPN~Y~kv~v~e~g~~sPK~~TkW~~ 104 (111)
.+.++.|.+|.+...+....+.+|+-++
T Consensus 34 ~~~~dpyv~v~l~~~~~~~~~~kT~v~~ 61 (127)
T cd04030 34 SDIPDPYVRLYLLPDKSKSTRRKTSVKK 61 (127)
T ss_pred CCCCCceEEEEEEcCCCCCceEeccccc
Confidence 6789999999997655455666776544
No 6
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=23.46 E-value=68 Score=22.10 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=21.3
Q ss_pred ccCCCcceeeeeeccCCCCCccccEEEEee
Q psy14070 77 LNSPNVYQKVEILETGTSDPKKITKVETLI 106 (111)
Q Consensus 77 LNSPN~Y~kv~v~e~g~~sPK~~TkW~~~~ 106 (111)
-..++.|.||.+........+.+|+..+.-
T Consensus 30 ~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~ 59 (122)
T cd08381 30 GSDPDPYVKTYLLPDPQKTTKRKTKVVRKT 59 (122)
T ss_pred CCCCCCEEEEEEeeCCccCCceeCCccCCC
Confidence 468899999998765444567777766543
No 7
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=21.55 E-value=1.5e+02 Score=20.48 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=21.5
Q ss_pred ccccCCCcceeeeeeccCCCCCccccEEEE
Q psy14070 75 RWLNSPNVYQKVEILETGTSDPKKITKVET 104 (111)
Q Consensus 75 RWLNSPN~Y~kv~v~e~g~~sPK~~TkW~~ 104 (111)
...+.+|.|.||.+...+....+.+|+-.+
T Consensus 32 ~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~ 61 (125)
T cd04029 32 EAKKRSNPYVKTYLLPDKSRQSKRKTSIKR 61 (125)
T ss_pred CCCCCCCcEEEEEEEcCCccccceEeeeee
Confidence 355789999999997665555666777544
No 8
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=20.63 E-value=95 Score=21.31 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=20.4
Q ss_pred cCCCcceeeeeeccCCCCCccccEEEEe
Q psy14070 78 NSPNVYQKVEILETGTSDPKKITKVETL 105 (111)
Q Consensus 78 NSPN~Y~kv~v~e~g~~sPK~~TkW~~~ 105 (111)
.++|.|.||.+...+....+.+|+-++.
T Consensus 35 g~~dpyVkv~l~p~~~~~~~~kT~v~~~ 62 (125)
T cd08393 35 QRSDPYVKTYLLPDKSNRGKRKTSVKKK 62 (125)
T ss_pred CCCCcEEEEEEEcCCCccccccCccCcC
Confidence 4789999999986655556677776553
No 9
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=19.58 E-value=1e+02 Score=20.47 Aligned_cols=28 Identities=29% Similarity=0.252 Sum_probs=18.8
Q ss_pred ccCCCcceeeeeeccCCCCCccccEEEE
Q psy14070 77 LNSPNVYQKVEILETGTSDPKKITKVET 104 (111)
Q Consensus 77 LNSPN~Y~kv~v~e~g~~sPK~~TkW~~ 104 (111)
...+|.|.+|.+...+....+.+|+.++
T Consensus 34 ~~~~dpyv~v~l~~~~~~~~~~kT~v~~ 61 (125)
T cd04031 34 GSLRNPYVKVYLLPDRSEKSKRRTKTVK 61 (125)
T ss_pred CCCCCCEEEEEEccCCCccccccccccC
Confidence 4678999999986544444555666443
No 10
>TIGR02293 TAS_TIGR02293 putative toxin-antitoxin system antitoxin component, TIGR02293 family. Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. This family was proposed by Makarova, et al. (2009) to be the antitoxin component of a new class of type 2 toxin-antitoxin system, or addiction module.
Probab=17.65 E-value=38 Score=24.35 Aligned_cols=10 Identities=30% Similarity=0.527 Sum_probs=8.0
Q ss_pred cccccCCCcc
Q psy14070 74 TRWLNSPNVY 83 (111)
Q Consensus 74 tRWLNSPN~Y 83 (111)
.+|||+||..
T Consensus 92 ~~WL~~Pn~~ 101 (133)
T TIGR02293 92 RQWLFRPVPG 101 (133)
T ss_pred HHHHhCcHHh
Confidence 4599999984
Done!