Query psy14070
Match_columns 111
No_of_seqs 74 out of 76
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 18:49:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14070.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14070hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yvc_D Neprilysin; protein-pep 16.6 41 0.0014 18.3 0.6 18 86-103 7-24 (26)
2 3biy_A Histone acetyltransfera 16.5 42 0.0014 27.9 0.9 17 1-17 143-159 (380)
3 1j6w_A Autoinducer-2 productio 13.8 43 0.0015 25.3 0.3 7 1-7 82-88 (175)
4 2b3r_A Phosphatidylinositol-4- 13.8 90 0.0031 20.3 1.8 26 77-102 37-62 (134)
5 1j98_A Autoinducer-2 productio 13.4 45 0.0015 24.8 0.3 7 1-7 83-89 (157)
6 1vje_A Autoinducer-2 productio 12.8 48 0.0016 24.9 0.3 7 1-7 81-87 (166)
7 1j6x_A Autoinducer-2 productio 12.6 49 0.0017 24.7 0.3 6 1-6 79-84 (160)
8 3rdl_A Protein kinase C alpha 10.7 1.3E+02 0.0045 18.9 1.8 25 77-101 34-58 (137)
9 1nt2_B Conserved hypothetical 9.2 83 0.0028 24.8 0.5 13 3-15 198-210 (258)
10 3gqu_A NOP5P protein; RNA bind 9.0 67 0.0023 24.1 -0.1 19 3-21 88-106 (169)
No 1
>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus}
Probab=16.60 E-value=41 Score=18.28 Aligned_cols=18 Identities=22% Similarity=0.488 Sum_probs=13.9
Q ss_pred eeeeccCCCCCccccEEE
Q psy14070 86 VEILETGTSDPKKITKVE 103 (111)
Q Consensus 86 v~v~e~g~~sPK~~TkW~ 103 (111)
.+|.+.+++-||++-.|.
T Consensus 7 mditdinapkpkkk~rws 24 (26)
T 2yvc_D 7 MDITDINAPKPKKKQRXX 24 (26)
T ss_pred cccccccCCCcchhhccc
Confidence 356667888899998885
No 2
>3biy_A Histone acetyltransferase P300; P300 HAT, bisubstrate inhibitor, protein-inhibitor complex; HET: 01K; 1.70A {Homo sapiens}
Probab=16.49 E-value=42 Score=27.95 Aligned_cols=17 Identities=41% Similarity=0.798 Sum_probs=15.0
Q ss_pred CCccccccccccccCCC
Q psy14070 1 GFRTGYIYRTPLIKGDP 17 (111)
Q Consensus 1 GyRTGY~YR~P~lr~ek 17 (111)
||.++|+|.||-+.+|-
T Consensus 143 Gf~~~hiWAcPP~~GDD 159 (380)
T 3biy_A 143 GYTTGHIWACPPSEGDD 159 (380)
T ss_dssp TCCEEEEECCCCCTTCC
T ss_pred CCceEEEEccCCCCCCc
Confidence 89999999999987654
No 3
>1j6w_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.10A {Haemophilus influenzae} SCOP: d.185.1.2 PDB: 1joe_A
Probab=13.79 E-value=43 Score=25.28 Aligned_cols=7 Identities=57% Similarity=1.141 Sum_probs=5.4
Q ss_pred CCccccc
Q psy14070 1 GFRTGYI 7 (111)
Q Consensus 1 GyRTGY~ 7 (111)
|||||+=
T Consensus 82 GCrTGFY 88 (175)
T 1j6w_A 82 GCRTGFY 88 (175)
T ss_dssp TTSSEEE
T ss_pred CcccccE
Confidence 8888873
No 4
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=13.79 E-value=90 Score=20.26 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=17.0
Q ss_pred ccCCCcceeeeeeccCCCCCccccEE
Q psy14070 77 LNSPNVYQKVEILETGTSDPKKITKV 102 (111)
Q Consensus 77 LNSPN~Y~kv~v~e~g~~sPK~~TkW 102 (111)
...++.|.+|.+...+....+.+|+.
T Consensus 37 ~g~~DPyv~v~l~~~~~~~~~~kT~v 62 (134)
T 2b3r_A 37 GADPNPYVKTYLLPDTHKTSKRKTKI 62 (134)
T ss_dssp SCCCCEEEEEEEESCSSSCCCEECCC
T ss_pred CCCCCeEEEEEEEcCCCCCceecCCc
Confidence 45689999999875443445555543
No 5
>1j98_A Autoinducer-2 production protein LUXS; autoinducer synthesis, signaling protein; 1.20A {Bacillus subtilis} SCOP: d.185.1.2 PDB: 1jqw_A 1jvi_A* 1ie0_A 2fqo_A* 2fqt_A* 1ycl_A*
Probab=13.38 E-value=45 Score=24.77 Aligned_cols=7 Identities=57% Similarity=1.118 Sum_probs=5.4
Q ss_pred CCccccc
Q psy14070 1 GFRTGYI 7 (111)
Q Consensus 1 GyRTGY~ 7 (111)
|||||+=
T Consensus 83 GCrTGFY 89 (157)
T 1j98_A 83 GCQTGYY 89 (157)
T ss_dssp TTSSEEE
T ss_pred CcccccE
Confidence 7888873
No 6
>1vje_A Autoinducer-2 production protein LUXS; structural genomics, hydrolase; 1.64A {Deinococcus radiodurans} SCOP: d.185.1.2 PDB: 1vgx_A 1inn_A 1j6v_A 1vh2_A
Probab=12.79 E-value=48 Score=24.88 Aligned_cols=7 Identities=57% Similarity=0.819 Sum_probs=5.5
Q ss_pred CCccccc
Q psy14070 1 GFRTGYI 7 (111)
Q Consensus 1 GyRTGY~ 7 (111)
|||||+=
T Consensus 81 GCrTGFY 87 (166)
T 1vje_A 81 GARTGMY 87 (166)
T ss_dssp TTSSEEE
T ss_pred ccccccE
Confidence 8899873
No 7
>1j6x_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.38A {Helicobacter pylori} SCOP: d.185.1.2
Probab=12.64 E-value=49 Score=24.70 Aligned_cols=6 Identities=50% Similarity=1.193 Sum_probs=5.1
Q ss_pred CCcccc
Q psy14070 1 GFRTGY 6 (111)
Q Consensus 1 GyRTGY 6 (111)
|||||+
T Consensus 79 GCrTGF 84 (160)
T 1j6x_A 79 GCQTGF 84 (160)
T ss_dssp TTSSEE
T ss_pred Ccchhc
Confidence 888887
No 8
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=10.71 E-value=1.3e+02 Score=18.91 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=15.8
Q ss_pred ccCCCcceeeeeeccCCCCCccccE
Q psy14070 77 LNSPNVYQKVEILETGTSDPKKITK 101 (111)
Q Consensus 77 LNSPN~Y~kv~v~e~g~~sPK~~Tk 101 (111)
...++.|.+|.+...+....+.+|+
T Consensus 34 ~~~~dpyv~v~~~~~~~~~~~~kT~ 58 (137)
T 3rdl_A 34 NGLSDPYVKLKLIPDPKNESKQKTK 58 (137)
T ss_dssp TSCCCEEEEEEEECCTTCCCCEECC
T ss_pred CCCCCeeEEEEEEcCCCCCeeecCc
Confidence 3568999999986543334444444
No 9
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1
Probab=9.23 E-value=83 Score=24.82 Aligned_cols=13 Identities=31% Similarity=0.771 Sum_probs=10.7
Q ss_pred ccccccccccccC
Q psy14070 3 RTGYIYRTPLIKG 15 (111)
Q Consensus 3 RTGY~YR~P~lr~ 15 (111)
.+||+|.+|+|.+
T Consensus 198 k~G~Iy~s~~V~~ 210 (258)
T 1nt2_B 198 KHGIIFLHPFIRT 210 (258)
T ss_dssp -CCGGGGSHHHHT
T ss_pred CcceEecCHHHhc
Confidence 4689999999984
No 10
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B
Probab=9.03 E-value=67 Score=24.06 Aligned_cols=19 Identities=37% Similarity=0.623 Sum_probs=0.0
Q ss_pred ccccccccccccCCCCCCC
Q psy14070 3 RTGYIYRTPLIKGDPPRPR 21 (111)
Q Consensus 3 RTGY~YR~P~lr~ek~r~~ 21 (111)
.+||+|.+|+|.+-.++.+
T Consensus 88 k~G~Iy~s~lV~~~p~~~r 106 (169)
T 3gqu_A 88 KHGVIYQYPAINRSPWWQR 106 (169)
T ss_dssp -CCGGGGSHHHHTSCTTTH
T ss_pred CCCEEEeCHhhhcCCHHHH
Done!