Query psy14070
Match_columns 111
No_of_seqs 74 out of 76
Neff 3.5
Searched_HMMs 13730
Date Fri Aug 16 18:49:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14070.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14070hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a25a_ b.7.1.2 (A:) C2 domain 19.1 23 0.0017 21.5 1.6 25 78-102 34-58 (132)
2 d2cm5a1 b.7.1.2 (A:541-677) C2 15.7 28 0.002 21.0 1.3 26 79-104 35-60 (137)
3 d1j6xa_ d.185.1.2 (A:) Autoind 13.8 20 0.0015 24.8 0.3 7 1-7 79-85 (151)
4 d1j6wa_ d.185.1.2 (A:) Autoind 13.5 21 0.0015 24.9 0.3 7 1-7 80-86 (161)
5 d1j98a_ d.185.1.2 (A:) Autoind 13.3 21 0.0016 24.7 0.3 6 1-6 80-85 (154)
6 d1vjea_ d.185.1.2 (A:) Autoind 12.4 24 0.0017 24.4 0.3 6 1-6 74-79 (149)
7 d1e09a_ d.129.3.1 (A:) Major t 9.7 1E+02 0.0075 20.0 2.9 25 79-104 34-58 (159)
8 d1dqva2 b.7.1.2 (A:425-569) Sy 9.2 52 0.0038 20.1 1.1 14 78-91 39-52 (145)
9 d1xzpa3 d.250.1.2 (A:1-117) Tr 9.0 43 0.0032 21.3 0.6 16 76-91 64-79 (117)
10 d1j9ia_ a.6.1.5 (A:) Terminase 8.3 4.8 0.00035 24.7 -4.3 18 87-104 7-24 (68)
No 1
>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=19.06 E-value=23 Score=21.48 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=16.2
Q ss_pred cCCCcceeeeeeccCCCCCccccEE
Q psy14070 78 NSPNVYQKVEILETGTSDPKKITKV 102 (111)
Q Consensus 78 NSPN~Y~kv~v~e~g~~sPK~~TkW 102 (111)
.++|.|.+|.+...+...-+.+|+.
T Consensus 34 g~~DpYv~v~l~~~~~~~~~~kT~v 58 (132)
T d1a25a_ 34 GLSDPYVKLKLIPDPKSESKQKTKT 58 (132)
T ss_dssp SCCCEEEEEEEESCTTCSSCEECCC
T ss_pred CCcCeEEEEEEccCCCCccccEEee
Confidence 4679999999865544444545543
No 2
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.68 E-value=28 Score=20.99 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=14.5
Q ss_pred CCCcceeeeeeccCCCCCccccEEEE
Q psy14070 79 SPNVYQKVEILETGTSDPKKITKVET 104 (111)
Q Consensus 79 SPN~Y~kv~v~e~g~~sPK~~TkW~~ 104 (111)
.+|.|.+|.+...+...-+.+|+.++
T Consensus 35 ~~dpyv~v~l~~~~~~~~~~kT~v~~ 60 (137)
T d2cm5a1 35 YSDPFVKLWLKPDMGKKAKHKTQIKK 60 (137)
T ss_dssp CCCEEEEEEEETC---CCEEECCCCC
T ss_pred CcCeEEEEEEEcCCccceeecCEeEc
Confidence 57899999986533333334454433
No 3
>d1j6xa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Helicobacter pylori [TaxId: 210]}
Probab=13.77 E-value=20 Score=24.77 Aligned_cols=7 Identities=43% Similarity=0.990 Sum_probs=5.5
Q ss_pred CCccccc
Q psy14070 1 GFRTGYI 7 (111)
Q Consensus 1 GyRTGY~ 7 (111)
|||||+=
T Consensus 79 GCrTGFY 85 (151)
T d1j6xa_ 79 GCQTGFY 85 (151)
T ss_dssp TTSSEEE
T ss_pred ccccccE
Confidence 8899973
No 4
>d1j6wa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Haemophilus influenzae [TaxId: 727]}
Probab=13.53 E-value=21 Score=24.93 Aligned_cols=7 Identities=57% Similarity=1.141 Sum_probs=5.5
Q ss_pred CCccccc
Q psy14070 1 GFRTGYI 7 (111)
Q Consensus 1 GyRTGY~ 7 (111)
|||||+=
T Consensus 80 GCrTGFY 86 (161)
T d1j6wa_ 80 GCRTGFY 86 (161)
T ss_dssp TTSSEEE
T ss_pred ccccceE
Confidence 8888873
No 5
>d1j98a_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Bacillus subtilis [TaxId: 1423]}
Probab=13.30 E-value=21 Score=24.70 Aligned_cols=6 Identities=67% Similarity=1.342 Sum_probs=4.9
Q ss_pred CCcccc
Q psy14070 1 GFRTGY 6 (111)
Q Consensus 1 GyRTGY 6 (111)
|||||+
T Consensus 80 GCrTGF 85 (154)
T d1j98a_ 80 GCQTGY 85 (154)
T ss_dssp TTSSEE
T ss_pred cccccc
Confidence 788886
No 6
>d1vjea_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Deinococcus radiodurans [TaxId: 1299]}
Probab=12.35 E-value=24 Score=24.36 Aligned_cols=6 Identities=67% Similarity=1.077 Sum_probs=4.9
Q ss_pred CCcccc
Q psy14070 1 GFRTGY 6 (111)
Q Consensus 1 GyRTGY 6 (111)
|||||+
T Consensus 74 GCrTGF 79 (149)
T d1vjea_ 74 GCRTGM 79 (149)
T ss_dssp TTSSEE
T ss_pred cccccc
Confidence 788886
No 7
>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}
Probab=9.68 E-value=1e+02 Score=20.04 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=19.7
Q ss_pred CCCcceeeeeeccCCCCCccccEEEE
Q psy14070 79 SPNVYQKVEILETGTSDPKKITKVET 104 (111)
Q Consensus 79 SPN~Y~kv~v~e~g~~sPK~~TkW~~ 104 (111)
.|+.++++++.|.++ .|.+|..|.=
T Consensus 34 ~p~~i~~ie~~eGdg-~~GsIr~~~~ 58 (159)
T d1e09a_ 34 APQAIKHSEILEGDG-GPGTIKKITF 58 (159)
T ss_dssp CTTTEEEEEEEESSS-STTCEEEEEE
T ss_pred CCcceeEEEEEcCCC-CcCcEEEEEE
Confidence 688999999987543 5888888864
No 8
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.16 E-value=52 Score=20.06 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=10.7
Q ss_pred cCCCcceeeeeecc
Q psy14070 78 NSPNVYQKVEILET 91 (111)
Q Consensus 78 NSPN~Y~kv~v~e~ 91 (111)
+.+|.|.+|.+...
T Consensus 39 ~~~dpyv~v~l~~~ 52 (145)
T d1dqva2 39 GFSDPYVKASLISE 52 (145)
T ss_dssp SCCCEEEEECCCTT
T ss_pred CCcCceEEEEEccC
Confidence 45789999998654
No 9
>d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]}
Probab=8.99 E-value=43 Score=21.34 Aligned_cols=16 Identities=25% Similarity=0.613 Sum_probs=14.5
Q ss_pred cccCCCcceeeeeecc
Q psy14070 76 WLNSPNVYQKVEILET 91 (111)
Q Consensus 76 WLNSPN~Y~kv~v~e~ 91 (111)
|+..||+|+-.++.|-
T Consensus 64 ~f~~P~S~TGEd~vEi 79 (117)
T d1xzpa3 64 FYKSPKSYTGEDMVEV 79 (117)
T ss_dssp EECTTSSSSSSCEEEE
T ss_pred EecCccCccccceEEE
Confidence 8999999999999883
No 10
>d1j9ia_ a.6.1.5 (A:) Terminase gpNU1 subunit domain {Bacteriophage lambda [TaxId: 10710]}
Probab=8.29 E-value=4.8 Score=24.74 Aligned_cols=18 Identities=6% Similarity=0.089 Sum_probs=14.4
Q ss_pred eeeccCCCCCccccEEEE
Q psy14070 87 EILETGTSDPKKITKVET 104 (111)
Q Consensus 87 ~v~e~g~~sPK~~TkW~~ 104 (111)
++++.++-||++||+|+.
T Consensus 7 ~lA~iFGVS~~TI~~W~~ 24 (68)
T d1j9ia_ 7 QLADIFGASIRTIQNWQE 24 (68)
T ss_dssp HHHHHTTCCHHHHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHH
Confidence 345668899999999975
Done!