RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14070
         (111 letters)



>gnl|CDD|218656 pfam05612, DUF781, Mouse protein of unknown function (DUF781).
           This family consists of uncharacterized mouse proteins
           of unknown function.
          Length = 356

 Score = 26.8 bits (59), Expect = 2.3
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 2   FRTGYIYRTPLIKGDPPRPRNDVEVPPAVSSLGYLLEEEEMYRNGWKGRKSNDRTRWLNS 61
           F T Y      + G PPR   + + PP ++      +   +    W      ++    + 
Sbjct: 256 FNTNYSRSYKFMDGLPPRVLQNTDHPPFIADFT-TEQNHVLVSLLWINDL--NQILGNSF 312

Query: 62  PNVWKGRKSNDRTR 75
            N+WK    +++ R
Sbjct: 313 LNLWKKAMKSEKAR 326


>gnl|CDD|184633 PRK14338, PRK14338, (dimethylallyl)adenosine tRNA
           methylthiotransferase; Provisional.
          Length = 459

 Score = 26.7 bits (59), Expect = 3.1
 Identities = 7/29 (24%), Positives = 15/29 (51%)

Query: 40  EEMYRNGWKGRKSNDRTRWLNSPNVWKGR 68
           E   +  W+GR   ++  + ++P  W G+
Sbjct: 400 EGEAKGKWRGRTRGNKLVFFSAPGDWTGK 428


>gnl|CDD|119173 pfam10653, Phage-A118_gp45, Protein gp45 of Bacteriophage A118.
          This domain is found in bacteriophage and is thought to
          have a gp45 function within the phage tail-fibre
          system.
          Length = 62

 Score = 24.3 bits (52), Expect = 6.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)

Query: 71 NDRTRWLNSPNVYQKVEILETG 92
          +DRT+ + +P   QK+ ++ETG
Sbjct: 20 DDRTKMIANPAFQQKIPLIETG 41


>gnl|CDD|216700 pfam01787, Ilar_coat, Ilarvirus coat protein.  This family consists
           of various coat proteins from the ilarviruses part of
           the Bromoviridae, members include apple mosaic virus and
           prune dwarf virus. The ilarvirus coat protein is
           required to initiate replication of the viral genome in
           host plants. Members of the Bromoviridae have a positive
           stand ssRNA genome with no DNA stage in there
           replication.
          Length = 204

 Score = 25.4 bits (56), Expect = 6.6
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 51  KSNDRTRW-LNSPN--VWKGRKSNDRTRWLNSPNVYQKVEILETGTSDPKKITKVETLI 106
           K    T+W L  PN  VW    +++ T   +    Y  +     G  +    TKV +++
Sbjct: 46  KRFPGTQWHLRGPNVQVWVVSGASEVTATTSGTYDYISLRTELEGIPEIHDDTKVYSVV 104


>gnl|CDD|183419 PRK12301, bssS, biofilm formation regulatory protein BssS;
           Reviewed.
          Length = 84

 Score = 24.3 bits (53), Expect = 9.8
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 55  RTRWLNSPNVWKGRKSNDRTRWLNSPNVYQKVEILETGTSDPKKITKVE 103
           R  + +  +         +T WL +    Q + ILE G      I K+E
Sbjct: 30  RLHYQSPNDQEPEGAEVGQTLWLTTDVARQFISILEAG------IAKIE 72


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.311    0.132    0.405 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,721,998
Number of extensions: 465889
Number of successful extensions: 257
Number of sequences better than 10.0: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 12
Length of query: 111
Length of database: 10,937,602
Length adjustment: 75
Effective length of query: 36
Effective length of database: 7,611,052
Effective search space: 273997872
Effective search space used: 273997872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.4 bits)