RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14070
         (111 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.4 bits (65), Expect = 0.23
 Identities = 22/99 (22%), Positives = 31/99 (31%), Gaps = 18/99 (18%)

Query: 3   RTGYI-YRTPLIKGDPPRPRNDVEVPPAVSSLGYLLEEEEMYRN----GWKGR-KSNDRT 56
              YI  R  L   +    + +V        L   L E    +N    G  G  K+    
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT---- 164

Query: 57  RWL-----NSPNVWKGRKSNDRTRWLNSPNVYQKVEILE 90
            W+      S  V    K + +  WLN  N      +LE
Sbjct: 165 -WVALDVCLSYKV--QCKMDFKIFWLNLKNCNSPETVLE 200


>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
           P-type ATPase, membrane protein, hydrolase, aluminium
           fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
           1iwc_A 1iwf_A
          Length = 1034

 Score = 26.8 bits (60), Expect = 1.9
 Identities = 8/15 (53%), Positives = 8/15 (53%), Gaps = 4/15 (26%)

Query: 16  DPPRPRNDVEVPPAV 30
           DPPR      VP AV
Sbjct: 603 DPPRA----TVPDAV 613


>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
           binding, haloacid dehydrogenease superfamily, phosphate
           analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
           PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
           1mo8_A* 1q3i_A
          Length = 1028

 Score = 26.4 bits (59), Expect = 2.2
 Identities = 8/15 (53%), Positives = 8/15 (53%), Gaps = 4/15 (26%)

Query: 16  DPPRPRNDVEVPPAV 30
           DPPR      VP AV
Sbjct: 598 DPPRA----AVPDAV 608


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.8 bits (56), Expect = 4.7
 Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 29/67 (43%)

Query: 7   IYRT--PLIKGDPPRPRNDVEVPPAVSSLGYLLEE--------EEMYRNGWKGRKSNDRT 56
           +Y+T   L+                +      L E        E+++  G       +  
Sbjct: 176 LYQTYHVLVG-------------DLIKFSAETLSELIRTTLDAEKVFTQGL------NIL 216

Query: 57  RWLNSPN 63
            WL +P+
Sbjct: 217 EWLENPS 223


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.311    0.132    0.405 

Gapped
Lambda     K      H
   0.267   0.0754    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,732,492
Number of extensions: 86861
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 9
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.4 bits)