RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14070
         (111 letters)



>d2fm9a1 a.257.1.1 (A:49-263) Cell invasion protein SipA,
          N-terminal domain {Salmonella typhimurium [TaxId:
          90371]}
          Length = 215

 Score = 24.5 bits (53), Expect = 3.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 76 WLNSPNVYQKVEILE 90
          + NS NV  K  I+E
Sbjct: 32 FTNSNNVAGKKAIME 46


>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 89

 Score = 23.7 bits (51), Expect = 3.6
 Identities = 4/12 (33%), Positives = 6/12 (50%)

Query: 32 SLGYLLEEEEMY 43
          ++  LL EE   
Sbjct: 75 NINLLLTEESGP 86


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.132    0.405 

Gapped
Lambda     K      H
   0.267   0.0493    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 439,411
Number of extensions: 18683
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 5
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.4 bits)