BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14071
(414 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OCR|A Chain A, Crystal Structure Of Aldolase Ii Superfamily Protein From
Pseudomonas Syringae
pdb|3OCR|B Chain B, Crystal Structure Of Aldolase Ii Superfamily Protein From
Pseudomonas Syringae
Length = 273
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 124/205 (60%), Gaps = 3/205 (1%)
Query: 101 WTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRGDIIEPGTTNFGVNTAT 160
WT +I H +AR+ +E FL+N GLL++EITAS+LVKVD+ G I++ T G+N A
Sbjct: 50 WTDHIYTHFSARVPGPDEHFLINAFGLLFDEITASNLVKVDIDGTIVDD-PTGLGINYAG 108
Query: 161 FSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESVVL-GELSTHPFTGYSRG 219
+ +H+AIHAAR DL+A++H T +AVS+ K GLLP+S+ S+ G ++ H + G +
Sbjct: 109 YVIHSAIHAARHDLQAVLHTHTRDGIAVSAQKDGLLPISQHSIAFSGRVAYHGYEGIALD 168
Query: 220 DEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFYNVYNLVAACEAQLKLMPAGLDNL 279
E+ER+V +LG + V L N+G + G +VE A ++ L AC Q+ AG L
Sbjct: 169 LSERERLVADLG-DKSVXILRNHGLLTGGVSVEHAIQQLHALEYACNIQIAAQSAGNAEL 227
Query: 280 VLIPEDVRKEIYDSSRVCPEGAIPA 304
V P +V ++ + ++ +G P
Sbjct: 228 VFPPREVIAKVEEQAKAIKDGNGPG 252
>pdb|2Z7B|A Chain A, Crystal Structure Of Mesorhizobium Loti
3-Hydroxy-2-Methylpyridine-4, 5-Dicarboxylate
Decarboxylase
Length = 270
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 27/180 (15%)
Query: 108 HITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRGDI----IEPGTTNFGVNTATFSV 163
HI+AR D E +P + A SL+ VD DI ++ T++ + +
Sbjct: 63 HISAR---DPE----DPASFFLAQKLAPSLITVD---DIQRFNLDGETSDNRPSYLERYI 112
Query: 164 HAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESVVLGELSTHPFTGYSRGDEEK 223
H+ I+ RPD++ ++H +PAV+ + L P++ +GE GDE
Sbjct: 113 HSEIYKTRPDVQCVLHTHSPAVLPYCFVDTPLRPVTHXGAFIGESVPVYEIRDKHGDETD 172
Query: 224 ---------ERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFYNVYNL---VAACEAQLKL 271
I +LG + V+ + +G V G++V E + + L AA A LK+
Sbjct: 173 LFGGSPDVCADIAESLG-SQTVVLXARHGVVNVGKSVREVVFRAFYLEQEAAALTAGLKI 231
>pdb|2OPI|A Chain A, Crystal Structure Of L-Fuculose-1-Phosphate Aldolase From
Bacteroides Thetaiotaomicron
pdb|2OPI|B Chain B, Crystal Structure Of L-Fuculose-1-Phosphate Aldolase From
Bacteroides Thetaiotaomicron
Length = 212
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 15/153 (9%)
Query: 147 IEPGTTNFGVNTATFSV-HAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESVVL 205
I GT GV + S H + RPD+ ++H + A+S K + V
Sbjct: 60 IASGTPTNGVKPSXESTFHLGVLRERPDVNVVLHFQSEYATAISCXKNKPTNFN----VT 115
Query: 206 GELSTH-----PFTGYSR-GDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFYNVY 259
E+ H P Y R G E + V + + L+N+G V CG+ ++ +
Sbjct: 116 AEIPCHVGSEIPVIPYYRPGSPELAKAVVEAXLKHNSVLLTNHGQVVCGKDFDQVYERAT 175
Query: 260 NLVAACEAQLKLMPAGLDNLVLIPEDVRK-EIY 291
AC ++ +G D VL PE++ EIY
Sbjct: 176 FFEXACRI---IVQSGGDYSVLTPEEIEDLEIY 205
>pdb|1E46|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant E73s
Length = 215
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 12/163 (7%)
Query: 96 MDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRGDIIEPGTTNFG 155
M G Q +++ R ++ L+ P G+ Y ++T S +V +D G E G
Sbjct: 17 MTRLGLNQGTAGNVSVRY---QDGMLITPTGIPYEKLTESHIVFIDGNGKH-EEGK---- 68
Query: 156 VNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESVVLG--ELSTHPF 213
+ ++++ H A + +RPD A++H AVS L + + G + P+
Sbjct: 69 LPSSSWRFHMAAYQSRPDANAVVHNHAVHCTAVSILNRSIPAIHYMIAAAGGNSIPCAPY 128
Query: 214 TGYSRGDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFY 256
+ G E V N K L ++G + C +E+A +
Sbjct: 129 ATF--GTRELSEHVALALKNRKATLLQHHGLIACEVNLEKALW 169
>pdb|1E47|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant E73q
Length = 215
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 12/163 (7%)
Query: 96 MDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRGDIIEPGTTNFG 155
M G Q +++ R ++ L+ P G+ Y ++T S +V +D G E G
Sbjct: 17 MTRLGLNQGTAGNVSVRY---QDGMLITPTGIPYEKLTESHIVFIDGNGKH-EEGK---- 68
Query: 156 VNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESVVLG--ELSTHPF 213
+ ++ + H A + +RPD A++H AVS L + + G + P+
Sbjct: 69 LPSSQWRFHMAAYQSRPDANAVVHNHAVHCTAVSILNRSIPAIHYMIAAAGGNSIPCAPY 128
Query: 214 TGYSRGDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFY 256
+ G E V N K L ++G + C +E+A +
Sbjct: 129 ATF--GTRELSEHVALALKNRKATLLQHHGLIACEVNLEKALW 169
>pdb|1DZW|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant F131a
Length = 215
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 10/162 (6%)
Query: 96 MDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRGDIIEPGTTNFG 155
M G Q +++ R ++ L+ P G+ Y ++T S +V +D G E G
Sbjct: 17 MTRLGLNQGTAGNVSVRY---QDGMLITPTGIPYEKLTESHIVFIDGNGKH-EEGK---- 68
Query: 156 VNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESVVLGELSTHPFTG 215
+ ++ + H A + +RPD A++H AVS L +P + ++ P
Sbjct: 69 LPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILNRS-IPAIHYMIAAAGGNSIPCAP 127
Query: 216 YSR-GDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFY 256
Y+ G E V N K L ++G + C +E+A +
Sbjct: 128 YATAGTRELSEHVALALKNRKATLLQHHGLIACEVNLEKALW 169
>pdb|1E4B|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant N29q
Length = 215
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 12/163 (7%)
Query: 96 MDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRGDIIEPGTTNFG 155
M G Q ++ R ++ L+ P G+ Y ++T S +V +D G E G
Sbjct: 17 MTRLGLNQGTAGQVSVRY---QDGMLITPTGIPYEKLTESHIVFIDGNGKH-EEGK---- 68
Query: 156 VNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESVVLG--ELSTHPF 213
+ ++ + H A + +RPD A++H AVS L + + G + P+
Sbjct: 69 LPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILNRSIPAIHYMIAAAGGNSIPCAPY 128
Query: 214 TGYSRGDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFY 256
+ G E V N K L ++G + C +E+A +
Sbjct: 129 ATF--GTRELSEHVALALKNRKATLLQHHGLIACEVNLEKALW 169
>pdb|1DZY|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant E214a
Length = 215
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 12/163 (7%)
Query: 96 MDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRGDIIEPGTTNFG 155
M G Q +++ R ++ L+ P G+ Y ++T S +V +D G E G
Sbjct: 17 MTRLGLNQGTAGNVSVRY---QDGMLITPTGIPYEKLTESHIVFIDGNGKH-EEGK---- 68
Query: 156 VNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESVVLG--ELSTHPF 213
+ ++ + H A + +RPD A++H AVS L + + G + P+
Sbjct: 69 LPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILNRSIPAIHYMIAAAGGNSIPCAPY 128
Query: 214 TGYSRGDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFY 256
+ G E V N K L ++G + C +E+A +
Sbjct: 129 ATF--GTRELSEHVALALKNRKATLLQHHGLIACEVNLEKALW 169
>pdb|1FUA|A Chain A, L-Fuculose 1-Phosphate Aldolase Crystal Form T
pdb|2FUA|A Chain A, L-Fuculose 1-Phosphate Aldolase Crystal Form T With Cobalt
pdb|3FUA|A Chain A, L-Fuculose-1-Phosphate Aldolase Crystal Form K
pdb|4FUA|A Chain A, L-fuculose-1-phosphate Aldolase Complex With Pgh
Length = 215
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 12/163 (7%)
Query: 96 MDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRGDIIEPGTTNFG 155
M G Q +++ R ++ L+ P G+ Y ++T S +V +D G E G
Sbjct: 17 MTRLGLNQGTAGNVSVRY---QDGMLITPTGIPYEKLTESHIVFIDGNGKH-EEGK---- 68
Query: 156 VNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESVVLG--ELSTHPF 213
+ ++ + H A + +RPD A++H AVS L + + G + P+
Sbjct: 69 LPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILNRSIPAIHYMIAAAGGNSIPCAPY 128
Query: 214 TGYSRGDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFY 256
+ G E V N K L ++G + C +E+A +
Sbjct: 129 ATF--GTRELSEHVALALKNRKATLLQHHGLIACEVNLEKALW 169
>pdb|1DZU|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant T26a
Length = 215
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 12/163 (7%)
Query: 96 MDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRGDIIEPGTTNFG 155
M G Q +++ R ++ L+ P G+ Y ++T S +V +D G E G
Sbjct: 17 MTRLGLNQGAAGNVSVRY---QDGMLITPTGIPYEKLTESHIVFIDGNGKH-EEGK---- 68
Query: 156 VNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESVVLG--ELSTHPF 213
+ ++ + H A + +RPD A++H AVS L + + G + P+
Sbjct: 69 LPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILNRSIPAIHYMIAAAGGNSIPCAPY 128
Query: 214 TGYSRGDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFY 256
+ G E V N K L ++G + C +E+A +
Sbjct: 129 ATF--GTRELSEHVALALKNRKATLLQHHGLIACEVNLEKALW 169
>pdb|1DZX|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant R212a
Length = 215
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 12/163 (7%)
Query: 96 MDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRGDIIEPGTTNFG 155
M G Q +++ R ++ L+ P G+ Y ++T S +V +D G E G
Sbjct: 17 MTRLGLNQGTAGNVSVRY---QDGMLITPTGIPYEKLTESHIVFIDGNGKH-EEGK---- 68
Query: 156 VNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESVVLG--ELSTHPF 213
+ ++ + H A + +RPD A++H AVS L + + G + P+
Sbjct: 69 LPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILNRSIPAIHYMIAAAGGNSIPCAPY 128
Query: 214 TGYSRGDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFY 256
+ G E V N K L ++G + C +E+A +
Sbjct: 129 ATF--GTRELSEHVALALKNRKATLLQHHGLIACEVNLEKALW 169
>pdb|1E48|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant E73qY113FY209F
Length = 215
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 12/163 (7%)
Query: 96 MDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRGDIIEPGTTNFG 155
M G Q +++ R ++ L+ P G+ Y ++T S +V +D G E G
Sbjct: 17 MTRLGLNQGTAGNVSVRY---QDGMLITPTGIPYEKLTESHIVFIDGNGKH-EEGK---- 68
Query: 156 VNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESVVLG--ELSTHPF 213
+ ++ + H A + +RPD A++H AVS L + + G + P+
Sbjct: 69 LPSSQWRFHMAAYQSRPDANAVVHNHAVHCTAVSILNRSIPAIHFMIAAAGGNSIPCAPY 128
Query: 214 TGYSRGDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFY 256
+ G E V N K L ++G + C +E+A +
Sbjct: 129 ATF--GTRELSEHVALALKNRKATLLQHHGLIACEVNLEKALW 169
>pdb|1E4A|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant Del(27)
Length = 214
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 9/139 (6%)
Query: 120 FLVNPHGLLYNEITASSLVKVDMRGDIIEPGTTNFGVNTATFSVHAAIHAARPDLKAIIH 179
L+ P G+ Y ++T S +V +D G E G + ++ + H A + +RPD A++H
Sbjct: 37 MLITPTGIPYEKLTESHIVFIDGNGKH-EEGK----LPSSEWRFHMAAYQSRPDANAVVH 91
Query: 180 VATPAVVAVSSLKCGLLPLSRESVVLG--ELSTHPFTGYSRGDEEKERIVRNLGPNNKVL 237
AVS L + + G + P+ + G E V N K
Sbjct: 92 NHAVHCTAVSILNRSIPAIHYMIAAAGGNSIPCAPYATF--GTRELSEHVALALKNRKAT 149
Query: 238 FLSNNGAVCCGETVEEAFY 256
L ++G + C +E+A +
Sbjct: 150 LLQHHGLIACEVNLEKALW 168
>pdb|1DZZ|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant Y113f
Length = 215
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 12/163 (7%)
Query: 96 MDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRGDIIEPGTTNFG 155
M G Q +++ R ++ L+ P G+ Y ++T S +V +D G E G
Sbjct: 17 MTRLGLNQGTAGNVSVRY---QDGMLITPTGIPYEKLTESHIVFIDGNGKH-EEGK---- 68
Query: 156 VNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESVVLG--ELSTHPF 213
+ ++ + H A + +RPD A++H AVS L + + G + P+
Sbjct: 69 LPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILNRSIPAIHFMIAAAGGNSIPCAPY 128
Query: 214 TGYSRGDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFY 256
+ G E V N K L ++G + C +E+A +
Sbjct: 129 ATF--GTRELSEHVALALKNRKATLLQHHGLIACEVNLEKALW 169
>pdb|1DZV|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant Y113fY209F
Length = 215
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 12/163 (7%)
Query: 96 MDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRGDIIEPGTTNFG 155
M G Q +++ R ++ L+ P G+ Y ++T S +V +D G E G
Sbjct: 17 MTRLGLNQGTAGNVSVRY---QDGMLITPTGIPYEKLTESHIVFIDGNGKH-EEGK---- 68
Query: 156 VNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESVVLG--ELSTHPF 213
+ ++ + H A + +RPD A++H AVS L + + G + P+
Sbjct: 69 LPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILNRSIPAIHFMIAAAGGNSIPCAPY 128
Query: 214 TGYSRGDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFY 256
+ G E V N K L ++G + C +E+A +
Sbjct: 129 ATF--GTRELSEHVALALKNRKATLLQHHGLIACEVNLEKALW 169
>pdb|1E4C|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant S71q
Length = 215
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 12/163 (7%)
Query: 96 MDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRGDIIEPGTTNFG 155
M G Q +++ R ++ L+ P G+ Y ++T S +V +D G E G
Sbjct: 17 MTRLGLNQGTAGNVSVRY---QDGMLITPTGIPYEKLTESHIVFIDGNGKH-EEGK---- 68
Query: 156 VNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESVVLG--ELSTHPF 213
+ + + H A + +RPD A++H AVS L + + G + P+
Sbjct: 69 LPQSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILNRSIPAIHYMIAAAGGNSIPCAPY 128
Query: 214 TGYSRGDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFY 256
+ G E V N K L ++G + C +E+A +
Sbjct: 129 ATF--GTRELSEHVALALKNRKATLLQHHGLIACEVNLEKALW 169
>pdb|1E49|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant N29lS71A
Length = 215
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 9/139 (6%)
Query: 120 FLVNPHGLLYNEITASSLVKVDMRGDIIEPGTTNFGVNTATFSVHAAIHAARPDLKAIIH 179
L+ P G+ Y ++T S +V +D G E G + + + H A + +RPD A++H
Sbjct: 38 MLITPTGIPYEKLTESHIVFIDGNGKH-EEGK----LPASEWRFHMAAYQSRPDANAVVH 92
Query: 180 VATPAVVAVSSLKCGLLPLSRESVVLG--ELSTHPFTGYSRGDEEKERIVRNLGPNNKVL 237
AVS L + + G + P+ + G E V N K
Sbjct: 93 NHAVHCTAVSILNRSIPAIHYMIAAAGGNSIPCAPYATF--GTRELSEHVALALKNRKAT 150
Query: 238 FLSNNGAVCCGETVEEAFY 256
L ++G + C +E+A +
Sbjct: 151 LLQHHGLIACEVNLEKALW 169
>pdb|3C1U|A Chain A, D192n Mutant Of Rhamnogalacturonan Acetylesterase
Length = 233
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 20/139 (14%)
Query: 224 ERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFYNVYNLVAACEAQLKLMPAGLDNLVLIP 283
+ ++ G N+ ++NG C T E Y+VY+ V + PA L+N +
Sbjct: 65 DYVIVEFGHNDGGSLSTDNGRTDCSGTGAEVCYSVYDGV---NETILTFPAYLENAAKLF 121
Query: 284 EDVRKEIYDSSRVCPEGAIPAGT--NSPTPAVLEKKEKRWRIGGMEF-------EALMRM 334
++ SS+ P GT NSPT V E E + G+E+ +++
Sbjct: 122 TAKGAKVILSSQT-PNNPWETGTFVNSPTRFV-EYAELAAEVAGVEYVDHWSYVDSIYET 179
Query: 335 LDNAKIPTGYSSNCVVPIN 353
L NA + N PIN
Sbjct: 180 LGNATV------NSYFPIN 192
>pdb|1RLH|A Chain A, Structure Of A Conserved Protein From Thermoplasma
Acidophilum
Length = 173
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 260 NLVAACEAQLKLMPAGLDNLVLIPEDVRKEIYDSSRVCPE-GAIPAGTNSPTPAVLEKKE 318
+LV AC ++ + AG ++LI I ++ ++C E G+I A T +P ++ K E
Sbjct: 77 DLVKACIENIRRISAGHTFVILIRNAYPINILNAVKMCQEVGSIFAATANPLQIIVYKGE 136
Query: 319 K 319
+
Sbjct: 137 R 137
>pdb|1US1|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1US1|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|2Y73|A Chain A, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y73|B Chain B, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y74|A Chain A, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
pdb|2Y74|B Chain B, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
Length = 763
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 5/38 (13%)
Query: 250 TVEEAFYN--VYNLVAACEAQLKLMPAGLDNLVLIPED 285
T+++ FY Y+ +A EAQ + AGL N+VLIP++
Sbjct: 260 TIQKVFYQGRYYDSLAQLEAQFE---AGLVNVVLIPDN 294
>pdb|2C10|A Chain A, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|B Chain B, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|C Chain C, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|D Chain D, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|A Chain A, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|B Chain B, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|C Chain C, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|D Chain D, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
Length = 735
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 5/38 (13%)
Query: 250 TVEEAFYN--VYNLVAACEAQLKLMPAGLDNLVLIPED 285
T+++ FY Y+ +A EAQ + AGL N+VLIP++
Sbjct: 232 TIQKVFYQGRYYDSLAQLEAQFE---AGLVNVVLIPDN 266
>pdb|1DEO|A Chain A, Rhamnogalacturonan Acetylesterase From Aspergillus
Aculeatus At 1.55 A Resolution With So4 In The Active
Site
pdb|1DEX|A Chain A, Rhamnogalacturonan Acetylesterase From Aspergillus
Aculeatus At 1.9 A Resolution
pdb|1K7C|A Chain A, Rhamnogalacturonan Acetylesterase With Seven N-Linked
Carbohydrate Residues Distributed At Two N-Glycosylation
Sites Refined At 1.12 A Resolution
pdb|1PP4|A Chain A, The Crystal Structure Of Rhamnogalacturonan Acetylesterase
In Space Group P3121
pdb|1PP4|B Chain B, The Crystal Structure Of Rhamnogalacturonan Acetylesterase
In Space Group P3121
Length = 233
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 20/139 (14%)
Query: 224 ERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFYNVYNLVAACEAQLKLMPAGLDNLVLIP 283
+ ++ G N+ ++NG C T E Y+VY+ V + PA L+N +
Sbjct: 65 DYVIVEFGHNDGGSLSTDNGRTDCSGTGAEVCYSVYDGV---NETILTFPAYLENAAKLF 121
Query: 284 EDVRKEIYDSSRVCPEGAIPAGT--NSPTPAVLEKKEKRWRIGGMEF-------EALMRM 334
++ SS+ P GT NSPT V E E + G+E+ +++
Sbjct: 122 TAKGAKVILSSQT-PNNPWETGTFVNSPTRFV-EYAELAAEVAGVEYVDHWSYVDSIYET 179
Query: 335 LDNAKIPTGYSSNCVVPIN 353
L NA + N PI+
Sbjct: 180 LGNATV------NSYFPID 192
>pdb|3ALA|A Chain A, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|B Chain B, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|C Chain C, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|D Chain D, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|E Chain E, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|F Chain F, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|G Chain G, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
Length = 748
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 5/38 (13%)
Query: 250 TVEEAFYN--VYNLVAACEAQLKLMPAGLDNLVLIPED 285
T+++ FY Y+ +A EAQ + AGL N+VLIP++
Sbjct: 245 TIQKVFYQGRYYDSLAQLEAQFE---AGLVNVVLIPDN 279
>pdb|3T3N|A Chain A, Molecular Basis For The Recognition And Cleavage Of Rna
(Uuccgu) By The Bifunctional 5'-3' ExoENDORIBONUCLEASE
RNASE J
pdb|3T3O|A Chain A, Molecular Basis For The Recognition And Cleavage Of Rna
(Cugg) By The Bifunctional 5'-3' ExoENDORIBONUCLEASE
RNASE J
Length = 562
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 160 TFSVHAAIHAARPDLKAIIHVATP 183
T+ VHA+ HA++ +LK I+++ TP
Sbjct: 376 TYKVHASGHASQEELKLILNLTTP 399
>pdb|3BK1|A Chain A, Crystal Structure Analysis Of Rnase J
pdb|3BK2|A Chain A, Crystal Structure Analysis Of The Rnase JUMP COMPLEX
Length = 562
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 160 TFSVHAAIHAARPDLKAIIHVATP 183
T+ VHA+ HA++ +LK I+++ TP
Sbjct: 375 TYKVHASGHASQEELKLILNLTTP 398
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,665,287
Number of Sequences: 62578
Number of extensions: 484341
Number of successful extensions: 1135
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1112
Number of HSP's gapped (non-prelim): 35
length of query: 414
length of database: 14,973,337
effective HSP length: 101
effective length of query: 313
effective length of database: 8,652,959
effective search space: 2708376167
effective search space used: 2708376167
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)