RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14071
(414 letters)
>gnl|CDD|235916 PRK07044, PRK07044, aldolase II superfamily protein; Provisional.
Length = 252
Score = 230 bits (590), Expect = 7e-74
Identities = 100/261 (38%), Positives = 146/261 (55%), Gaps = 28/261 (10%)
Query: 85 LRCKVAAVYRLMDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRG 144
R +AA YRL+ L GW I HI+AR+ +E FL+NP+GLL++EITAS+LVK+D+ G
Sbjct: 17 ARVDLAAAYRLVALLGWDDLIYTHISARVPGEEHHFLINPYGLLFDEITASNLVKIDLDG 76
Query: 145 DIIEPGTTNFGVNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESV- 203
++++ + + VN A F++H+AIHAARPD ++H T A VAVS+ + GLLPLS+ ++
Sbjct: 77 NVVDD--SPYPVNPAGFTIHSAIHAARPDAHCVMHTHTTAGVAVSAQRDGLLPLSQHALQ 134
Query: 204 VLGELSTHPFTGYSRGDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFYNVYNLVA 263
G L+ H + G + +E ER+V +LG + L N+G + G TV EAF +Y L
Sbjct: 135 FYGRLAYHDYEGIALDLDEGERLVADLGDKP-AMLLRNHGLLTVGRTVAEAFLLMYTLER 193
Query: 264 ACEAQLKLMPAGLDNLVLIPEDVRKEIYDSSRVCPEGAIPAGTNSPTPAVLEKKEKRWRI 323
ACE Q+ G + LVL P +V + S P
Sbjct: 194 ACEIQVAAQAGGGE-LVLPPPEVAERTARQSLFDPGAGA--------------------- 231
Query: 324 GGMEFEALMRMLDNAKIPTGY 344
G + + AL+R LD +I GY
Sbjct: 232 GELAWPALLRKLD--RIDPGY 250
Score = 43.3 bits (103), Expect = 1e-04
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 370 LRCKVAAVYRLMDLYGWTQNIQNHITV 396
R +AA YRL+ L GW I HI+
Sbjct: 17 ARVDLAAAYRLVALLGWDDLIYTHISA 43
>gnl|CDD|216015 pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal
domain. This family includes class II aldolases and
adducins which have not been ascribed any enzymatic
function.
Length = 181
Score = 172 bits (439), Expect = 3e-52
Identities = 66/185 (35%), Positives = 103/185 (55%), Gaps = 6/185 (3%)
Query: 87 CKVAAVYRLMDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRGDI 146
++AA RL+ G + +I+AR D + FL+ P G+ + E+TA LV VD+ G++
Sbjct: 1 EELAAACRLLARRGLVEGTGGNISAR---DPDHFLITPSGVDFGELTAEDLVVVDLDGNV 57
Query: 147 IEPGTTNFGVNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESVVLG 206
+E G G ++ +HAAI+ ARPD+ A++H +P A+S+LK GL P+++E+
Sbjct: 58 VE-GGEGGGKPSSETPLHAAIYRARPDVGAVVHTHSPYATALSALKEGLPPITQEAAAFY 116
Query: 207 ELSTHPFTGYSRG--DEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFYNVYNLVAA 264
P Y R +E ER+ LG + K + L N+G + G+T+EEAF L A
Sbjct: 117 LGGEIPVVPYYRPGTEELGERLAEALGGDRKAVLLRNHGLLVWGKTLEEAFDRAEVLERA 176
Query: 265 CEAQL 269
E QL
Sbjct: 177 AEIQL 181
Score = 34.1 bits (79), Expect = 0.064
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 372 CKVAAVYRLMDLYGWTQNIQNHITV 396
++AA RL+ G + +I+
Sbjct: 1 EELAAACRLLARRGLVEGTGGNISA 25
>gnl|CDD|238232 cd00398, Aldolase_II, Class II Aldolase and Adducin head
(N-terminal) domain. Aldolases are ubiquitous enzymes
catalyzing central steps of carbohydrate metabolism.
Based on enzymatic mechanisms, this superfamily has been
divided into two distinct classes (Class I and II).
Class II enzymes are further divided into two
sub-classes A and B. This family includes class II A
aldolases and adducins which has not been ascribed any
enzymatic function. Members of this class are primarily
bacterial and eukaryotic in origin and include
L-fuculose-1-phosphate, L-rhamnulose-1-phosphate
aldolases and L-ribulose-5-phosphate 4-epimerases. They
all share the ability to promote carbon-carbon bond
cleavage and stabilize enolate intermediates using
divalent cations.
Length = 209
Score = 165 bits (419), Expect = 5e-49
Identities = 73/214 (34%), Positives = 110/214 (51%), Gaps = 16/214 (7%)
Query: 82 EKILRCKVAAVYRLMDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVD 141
EK+ R K+ A L+DLYGW +++AR D FL+ P G+ Y E+TAS LV VD
Sbjct: 1 EKLKR-KIIAACLLLDLYGWVTGTGGNVSARDR-DRGYFLITPSGVDYEEMTASDLVVVD 58
Query: 142 MRGDIIEP--GTTNFGVNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLS 199
+G ++E ++ + H A++ ARPD+ I+H + AVS LK GL+P
Sbjct: 59 AQGKVVEGKKPSSETPL-------HLALYRARPDIGCIVHTHSTHATAVSQLKEGLIPAG 111
Query: 200 RESVVL---GELSTHPFTGYSRGDEEKERIVRNLG-PNNKVLFLSNNGAVCCGETVEEAF 255
+ + G++ P+ G E++ R LG PN+K + L N+G G T++EAF
Sbjct: 112 HTACAVYFTGDIPCTPYMTPETG-EDEIGTQRALGFPNSKAVLLRNHGLFAWGPTLDEAF 170
Query: 256 YNVYNLVAACEAQLKLMPAGLDNLVLIPEDVRKE 289
+ L A E QLK + G + E + KE
Sbjct: 171 HLAVVLEVAAEIQLKALSMGGQLPPISLELLNKE 204
Score = 29.6 bits (67), Expect = 2.2
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 367 EKILRCKVAAVYRLMDLYGWTQ 388
EK+ R K+ A L+DLYGW
Sbjct: 1 EKLKR-KIIAACLLLDLYGWVT 21
>gnl|CDD|214970 smart01007, Aldolase_II, Class II Aldolase and Adducin N-terminal
domain. This family includes class II aldolases and
adducins which have not been ascribed any enzymatic
function.
Length = 185
Score = 153 bits (390), Expect = 5e-45
Identities = 60/188 (31%), Positives = 99/188 (52%), Gaps = 10/188 (5%)
Query: 89 VAAVYRLMDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRGDIIE 148
+AA RL+ G + +I+AR+ +E++FL+ P G+ + E+TAS LV VD+ G+++E
Sbjct: 1 LAAACRLLARRGLVEGTGGNISARVG-EEDLFLITPSGVDFGELTASDLVVVDLDGNVVE 59
Query: 149 PGTTNFGVNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRES---VVL 205
G ++ +H AI+ ARPD+ A++H +P A+++L L L E +
Sbjct: 60 GGGG--PKPSSETPLHLAIYRARPDVGAVVHTHSPYATALAALGKPLPLLPTEQAAAFLG 117
Query: 206 GELSTHPFTGY-SRGDEEKERIVRNLGP---NNKVLFLSNNGAVCCGETVEEAFYNVYNL 261
GE+ P+ G + EE + L + + L N+G + G+T+EEAF L
Sbjct: 118 GEIPYAPYAGPGTELAEEGAELAEALAEALPDRPAVLLRNHGLLVWGKTLEEAFDLAEEL 177
Query: 262 VAACEAQL 269
A E QL
Sbjct: 178 EEAAEIQL 185
Score = 31.8 bits (73), Expect = 0.38
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 374 VAAVYRLMDLYGWTQNIQNHITV 396
+AA RL+ G + +I+
Sbjct: 1 LAAACRLLARRGLVEGTGGNISA 23
>gnl|CDD|223313 COG0235, AraD, Ribulose-5-phosphate 4-epimerase and related
epimerases and aldolases [Carbohydrate transport and
metabolism].
Length = 219
Score = 132 bits (334), Expect = 2e-36
Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 9/203 (4%)
Query: 85 LRCKVAAVYRLMDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRG 144
LR ++A RL+ G + +I+ RL + +FL+ P G+ + E+TA LV VD+ G
Sbjct: 8 LRQELAKAARLLARRGLVEGTAGNISVRLP-EGGLFLITPSGVPFGELTADDLVVVDLDG 66
Query: 145 DIIEPGTTNFGVNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRES-V 203
+++E G ++ +H AI+ ARPD A++H +P A+S+L L PL E
Sbjct: 67 EVVEGG----KKPSSETPIHLAIYRARPDAGAVVHTHSPYATALSTLGEPLPPLGTEHLK 122
Query: 204 VLGELSTHPFTGYSRGDEEKERIVRN--LGPNNKVLFLSNNGAVCCGETVEEAFYNVYNL 261
G G E + + L N+G V G+T+ EA + L
Sbjct: 123 YFGGGIPC-APYAGPGSVELAEALAEAADLAEAVLKLLRNHGVVAWGKTLAEAVHLAEVL 181
Query: 262 VAACEAQLKLMPAGLDNLVLIPE 284
+ QLK + G L E
Sbjct: 182 EELAKLQLKALSLGKPLLTAPDE 204
Score = 27.7 bits (62), Expect = 8.9
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 370 LRCKVAAVYRLMDLYGWTQNIQNHITV 396
LR ++A RL+ G + +I+V
Sbjct: 8 LRQELAKAARLLARRGLVEGTAGNISV 34
>gnl|CDD|168637 PRK06661, PRK06661, hypothetical protein; Provisional.
Length = 231
Score = 132 bits (333), Expect = 3e-36
Identities = 68/207 (32%), Positives = 117/207 (56%), Gaps = 7/207 (3%)
Query: 89 VAAVYRLMDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRGDIIE 148
+AA YR+M + H++AR + + + + P GL + E+T +L+KV + G I+E
Sbjct: 7 LAAAYRIMAYLSLDDHTYTHLSARPK-NADFYYIYPFGLRFEEVTTENLLKVSLDGQILE 65
Query: 149 PGTTNFGVNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESVVLGE- 207
+ N + +H +I+ RPD+ AI H TPA +AVS+LKCGLLP+S+ ++ +
Sbjct: 66 GEEYQY--NKTGYFIHGSIYKTRPDISAIFHYHTPASIAVSALKCGLLPISQWALHFYDR 123
Query: 208 LSTHPFTGYS-RGDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFYNVYNLVAACE 266
+S H + + D++ R+V +L N V+ L N+GA+ CG+T+ EA + Y+L AC+
Sbjct: 124 ISYHNYNSLALDADKQSSRLVNDLK-QNYVMLLRNHGAITCGKTIHEAMFYTYHLEQACK 182
Query: 267 AQLKLMPAGLDNLVLIPEDV-RKEIYD 292
Q L L++ ++ +K + D
Sbjct: 183 TQCLLNSTKKQELIIPSVEICKKTVKD 209
>gnl|CDD|235743 PRK06208, PRK06208, hypothetical protein; Provisional.
Length = 274
Score = 123 bits (312), Expect = 1e-32
Identities = 65/203 (32%), Positives = 103/203 (50%), Gaps = 12/203 (5%)
Query: 88 KVAAVYRLMDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRGDII 147
++AA +RL +G+ + + HITAR + F VNP G+ +++I S L+ VD G+++
Sbjct: 46 RLAAAFRLFARFGFDEGLAGHITARDPELPDHFWVNPLGVHFSQIKVSDLLLVDHDGEVV 105
Query: 148 EPGTTNFGVNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESVVLGE 207
E + +N A F++H+AIH ARPD+ A H + A S+L L P+++++ E
Sbjct: 106 E---GDRPLNRAAFAIHSAIHEARPDVVAAAHTHSTYGKAWSTLGRPLDPITQDACAFYE 162
Query: 208 LSTH----PFTGYSRGDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFYNVYNLVA 263
H FTG E RI LG +K + L N+G + G +V+ A + L
Sbjct: 163 --DHALFDDFTGVVVDTSEGRRIAAALGT-HKAVILQNHGLLTVGPSVDAAAWWFIALER 219
Query: 264 ACEAQLKLMPAGLDNLVLIPEDV 286
AC+ QL AG I +
Sbjct: 220 ACQTQLLAEAAG--PPQPIDHET 240
>gnl|CDD|235814 PRK06486, PRK06486, hypothetical protein; Provisional.
Length = 262
Score = 111 bits (279), Expect = 3e-28
Identities = 69/215 (32%), Positives = 108/215 (50%), Gaps = 10/215 (4%)
Query: 85 LRCKVAAVYRLMDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRG 144
R +AA +R +G + I NH +A L +++FLVNP+G ++EITAS L+ D G
Sbjct: 27 ARVDLAACFRAAARHGLEEGICNHFSAVLPGHDDLFLVNPYGYAFSEITASDLLICDFDG 86
Query: 145 DIIEPGTTNFGVNTAT-FSVHAAIHAARPDLKAIIHVATPAVVAVSSLK-CGLLPLSRES 202
+++ G G AT F +HA IH A P KA H P A+S + L L + +
Sbjct: 87 NVLA-GR---GEPEATAFFIHARIHRAIPRAKAAFHTHMPYATALSLTEGRPLTTLGQTA 142
Query: 203 V-VLGELST-HPFTGYSRGDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFYNVYN 260
+ G + + G + E +RI R +G + ++FL N+G + CG + EA+ ++Y
Sbjct: 143 LKFYGRTAVDEDYNGLALDAAEGDRIARAMG-DADIVFLKNHGVMVCGPRIAEAWDDLYY 201
Query: 261 LVAACEAQLKLMPAGLDNLVLIPEDVRKEIYDSSR 295
L ACE Q+ M G LV + + + R
Sbjct: 202 LERACEVQVLAMSTGRP-LVPVDPAIAAAVARQMR 235
>gnl|CDD|236031 PRK07490, PRK07490, hypothetical protein; Provisional.
Length = 245
Score = 83.2 bits (206), Expect = 3e-18
Identities = 57/218 (26%), Positives = 102/218 (46%), Gaps = 29/218 (13%)
Query: 85 LRCKVAAVYRLMDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDM-- 142
+R +AA +R + G + + NH +A ++ D + FL+NP ++ I AS L+ +D
Sbjct: 11 IRVDLAAAFRWIARLGMHEAVANHFSAAVSADGKQFLLNPKWKHFSRIRASDLLLLDADD 70
Query: 143 -----RGDIIEPGTTNFGVNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCG-LL 196
R D+ + TA +++H IH P + ++HV + A++ L L
Sbjct: 71 PSTAERPDVPDA--------TA-WAIHGQIHRRLPHARCVMHVHSVYATALACLADPTLP 121
Query: 197 PLSRES------VVLGELSTHPFTGYSRGDEEKERIVRNLGPNNKVLFLSNNGAVCCGET 250
P+ + + V + L + G + +EE ER+ LG + + L + N+G + G+T
Sbjct: 122 PIDQNTARFFNRVAVDTL----YGGMAL-EEEGERLAGLLG-DKRRLLMGNHGVLVTGDT 175
Query: 251 VEEAFYNVYNLVAACEAQLKLMPAGLDNLVLIPEDVRK 288
V EAF ++Y AC+ + + G VL K
Sbjct: 176 VAEAFDDLYYFERACQTYITALSTGQPLRVLSDAVAEK 213
>gnl|CDD|180832 PRK07090, PRK07090, class II aldolase/adducin domain protein;
Provisional.
Length = 260
Score = 69.7 bits (171), Expect = 2e-13
Identities = 67/216 (31%), Positives = 106/216 (49%), Gaps = 22/216 (10%)
Query: 85 LRCKVAAVYRLMDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRG 144
LR K+A R++ G + ITAR + GL ++EITAS+L+ VD
Sbjct: 31 LRQKLALTCRILFDAGHDSGLAGQITARAE-APGTYYTQRLGLGFDEITASNLLLVDEDL 89
Query: 145 DIIEPGTTNFGV-NTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLL------- 196
++++ G G+ N A H+ I+ ARPD+ IIH P V A+S L+ L+
Sbjct: 90 NVLD-GE---GMPNPAN-RFHSWIYRARPDVNCIIHTHPPHVAALSMLEVPLVVSHMDTC 144
Query: 197 PLSRESVVLGELSTHPFTGYSRGDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFY 256
PL + L + + G G+EE E I LG + + + LS++G + G+++EEA
Sbjct: 145 PLYDDCAFLKD-----WPGVPVGNEEGEIISAALG-DKRAILLSHHGQLVAGKSIEEACV 198
Query: 257 NVYNLVAACEAQLKLMPAGLDNLVLIPEDVRKEIYD 292
+ A QL M AG + IP ++ +E +D
Sbjct: 199 LALLIERAARLQLLAMAAG--PIKPIPPELAREAHD 232
>gnl|CDD|181241 PRK08130, PRK08130, putative aldolase; Validated.
Length = 213
Score = 58.3 bits (142), Expect = 7e-10
Identities = 46/192 (23%), Positives = 77/192 (40%), Gaps = 33/192 (17%)
Query: 109 ITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRGDIIE---PGTTNFGVNTATFSVHA 165
I+ARL D+ +LV P G + + L KVD G+ + P + +H
Sbjct: 30 ISARL--DDGGWLVTPTGSCLGRLDPARLSKVDADGNWLSGDKP--------SKEVPLHR 79
Query: 166 AIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESVVL-----------GELSTHPFT 214
AI+ P+ A++H+ + + A+S L + VL G + P+
Sbjct: 80 AIYRNNPECGAVVHLHSTHLTALS-----CLGGLDPTNVLPPFTPYYVMRVGHVPLIPY- 133
Query: 215 GYSRGDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFYNVYNLVAACEAQLKLMPA 274
Y GD + L + + L+N+G V G ++E A L A+L L+
Sbjct: 134 -YRPGDPAIAEALAGLAARYRAVLLANHGPVVWGSSLEAAVNATEELEET--AKLILLLG 190
Query: 275 GLDNLVLIPEDV 286
G L E++
Sbjct: 191 GRPPRYLTDEEI 202
>gnl|CDD|235829 PRK06557, PRK06557, L-ribulose-5-phosphate 4-epimerase; Validated.
Length = 221
Score = 50.0 bits (120), Expect = 4e-07
Identities = 44/179 (24%), Positives = 84/179 (46%), Gaps = 21/179 (11%)
Query: 85 LRCKVAAVYRLMDLYG---WTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVD 141
LR +V ++ + YG WT +++AR ++ ++ P G+ Y+++T +V VD
Sbjct: 11 LREEVCKLHLELPKYGLVVWTSG---NVSARD-PGTDLVVIKPSGVSYDDLTPEDMVVVD 66
Query: 142 MRGDIIEPGTTNFGVNTATFSVHAAIHAARPDLKAIIHVATPAVVAVS----SLKCGLLP 197
+ G+++E G +TA+ H ++ PD+ ++H + A + + C L
Sbjct: 67 LDGNVVE-GDLKPSSDTAS---HLYVYRHMPDVGGVVHTHSTYATAWAARGEPIPCVLTA 122
Query: 198 LSRESVVLGELSTHPFTGYSRGDEE-KERIVRNL-GPNNKVLFLSNNGAVCCGETVEEA 254
++ E G + PF GDE + IV L G + + + N+G G+ E+A
Sbjct: 123 MADE--FGGPIPVGPFALI--GDEAIGKGIVETLKGGRSPAVLMQNHGVFTIGKDAEDA 177
>gnl|CDD|181393 PRK08333, PRK08333, L-fuculose phosphate aldolase; Provisional.
Length = 184
Score = 49.4 bits (118), Expect = 5e-07
Identities = 38/177 (21%), Positives = 77/177 (43%), Gaps = 14/177 (7%)
Query: 83 KILRCKVAAVYRLMDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDM 142
+ ++ ++ +L G T +++ R V +F + G + +E+T + +D+
Sbjct: 2 RNVKAQLVKYSKLAHERGLTAAFGGNLSIR--VGNLVF-IKATGSVMDELTREQVAVIDL 58
Query: 143 RGDIIEPGTTNFGVN-TATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPL--S 199
G+ + V ++ + +H A++ RPD++AI H+ P + S+L LP+
Sbjct: 59 NGNQLS------SVRPSSEYRLHLAVYRNRPDVRAIAHLHPPYSIVASTLLEEELPIITP 112
Query: 200 RESVVLGELSTHPFTGYSRGDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFY 256
+ L ++ PF G E V + + +G V G ++ EAFY
Sbjct: 113 EAELYLKKIPILPFR--PAGSVELAEQVAEAMKEYDAVIMERHGIVTVGRSLREAFY 167
>gnl|CDD|188107 TIGR01086, fucA, L-fuculose phosphate aldolase. Members of this
family are L-fuculose phosphate aldolase from various
Proteobacteria, encoded in fucose utilization operons.
Homologs in other bacteria given similar annotation but
scoring below the trusted cutoff may share extensive
sequence similarity but are not experimenally
characterized and are not found in apparent fucose
utilization operons; we consider their annotation as
L-fuculose phosphate aldolase to be tenuous. This model
has been narrowed in scope from the previous version
[Energy metabolism, Sugars].
Length = 214
Score = 41.9 bits (98), Expect = 2e-04
Identities = 40/193 (20%), Positives = 78/193 (40%), Gaps = 12/193 (6%)
Query: 96 MDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRGDIIEPGTTNFG 155
M G Q +++ R ++ L+ P G+ Y ++T +V VD G E
Sbjct: 16 MTRLGLNQGTAGNVSVRY---KDGMLITPTGIPYEKLTTEHIVYVDGNGKHEEGK----- 67
Query: 156 VNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESVVLG--ELSTHPF 213
+ ++ + H +++ RPD A++H AVS L + + G + P+
Sbjct: 68 LPSSEWQFHLSVYQTRPDANAVVHNHAIHCAAVSILNKSIPAIHYMVAASGTDHIPCVPY 127
Query: 214 TGYSRGDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFYNVYNLVAACEAQLKLMP 273
+ G + V +K + L ++G + C +E+A + + + LK +
Sbjct: 128 ATF--GSHKLASYVATGIKESKAILLQHHGLIACEVNLEKALWLAHEVEVLASLYLKTLA 185
Query: 274 AGLDNLVLIPEDV 286
L+ VL E +
Sbjct: 186 ITLEVPVLSKEQM 198
>gnl|CDD|181226 PRK08087, PRK08087, L-fuculose phosphate aldolase; Provisional.
Length = 215
Score = 41.6 bits (98), Expect = 3e-04
Identities = 40/168 (23%), Positives = 69/168 (41%), Gaps = 9/168 (5%)
Query: 121 LVNPHGLLYNEITASSLVKVDMRGDIIEPGTTNFGVNTATFSVHAAIHAARPDLKAIIHV 180
L+ P G+ Y ++T S +V VD G E G + ++ + H A + RPD A++H
Sbjct: 39 LITPTGIPYEKLTESHIVFVDGNGKH-EEGK----LPSSEWRFHMAAYQTRPDANAVVHN 93
Query: 181 ATPAVVAVSSLKCGLLPLSRESVVLG--ELSTHPFTGYSRGDEEKERIVRNLGPNNKVLF 238
AVS L + + G + P+ + G E V N K
Sbjct: 94 HAVHCTAVSILNRPIPAIHYMIAAAGGNSIPCAPY--ATFGTRELSEHVALALKNRKATL 151
Query: 239 LSNNGAVCCGETVEEAFYNVYNLVAACEAQLKLMPAGLDNLVLIPEDV 286
L ++G + C +E+A + + + + LK + VL E++
Sbjct: 152 LQHHGLIACEVNLEKALWLAHEVEVLAQLYLKTLAITDPVPVLSDEEI 199
>gnl|CDD|236181 PRK08193, araD, L-ribulose-5-phosphate 4-epimerase; Reviewed.
Length = 231
Score = 40.2 bits (95), Expect = 9e-04
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 115 VDEE--IFLVNPHGLLYNEITASSLVKVDMRGDIIEPGTTNFGVNTATFSVHAAIHAARP 172
+D E +F++ P G+ Y+++TA +V VD+ G+++E G +T T H ++ A P
Sbjct: 32 IDRERGLFVIKPSGVDYDKMTAEDMVVVDLEGNVVE-GKLKPSSDTPT---HLVLYKAFP 87
Query: 173 DLKAIIH 179
++ I+H
Sbjct: 88 EIGGIVH 94
>gnl|CDD|180717 PRK06833, PRK06833, L-fuculose phosphate aldolase; Provisional.
Length = 214
Score = 39.7 bits (93), Expect = 0.001
Identities = 36/173 (20%), Positives = 74/173 (42%), Gaps = 9/173 (5%)
Query: 114 NVDEEIFLVNPHGLLYNEITASSLVKVDMRGDIIEPGTTNFGVNTATFSVHAAIHAARPD 173
N ++ + + P G+ Y EI +V +D+ G ++E G ++ +H + R D
Sbjct: 34 NREQGLMAITPSGIDYFEIKPEDIVIMDLDGKVVE-GER---KPSSELDMHLIFYRNRED 89
Query: 174 LKAIIHVATPAVVAVSSLKCGLLPLSRESVVLG-ELSTHPFTGYSRGDEEKERIVRNLGP 232
+ AI+H +P ++ L L + V G + + + G +E
Sbjct: 90 INAIVHTHSPYATTLACLGWELPAVHYLIAVAGPNVRCAEYATF--GTKELAENAFEAME 147
Query: 233 NNKVLFLSNNGAVCCGETVEEAFYNVYNLVAACEAQLKLMPAGLDNLVLIPED 285
+ + + L+N+G + ++ AF N+ + C A++ + L+PED
Sbjct: 148 DRRAVLLANHGLLAGANNLKNAF-NIAEEIEFC-AEIYYQTKSIGEPKLLPED 198
>gnl|CDD|183870 PRK13145, araD, L-ribulose-5-phosphate 4-epimerase; Provisional.
Length = 234
Score = 39.0 bits (91), Expect = 0.002
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 115 VDEE--IFLVNPHGLLYNEITASSLVKVDMRGDIIEPGTTNFGVNTATFSVHAAIHAARP 172
V E ++ P G+ Y+E+T ++V D+ G+++E G N + T H ++ A P
Sbjct: 33 VCRELGRIVIKPSGVDYDELTPENMVVTDLDGNVVE-GDLNPSSDLPT---HVELYKAWP 88
Query: 173 DLKAIIHV-ATPAV 185
++ I+H +T AV
Sbjct: 89 EVGGIVHTHSTEAV 102
>gnl|CDD|234168 TIGR03328, salvage_mtnB, methylthioribulose-1-phosphate
dehydratase. Members of this family are the
methylthioribulose-1-phosphate dehydratase of the
methionine salvage pathway. This pathway allows
methylthioadenosine, left over from polyamine
biosynthesis, to be recycled to methionine [Amino acid
biosynthesis, Aspartate family].
Length = 193
Score = 38.4 bits (90), Expect = 0.003
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 97 DLY--GWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRGDIIEPGTTNF 154
DLY GW +++ARL DE+ L+ P G+ +T + VD++G + G
Sbjct: 7 DLYKRGWVPGTGGNLSARL--DEDEILITPSGVDKGRLTPEDFLVVDLQGKPVSGG---- 60
Query: 155 GVNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSL 191
+A +H ++ P A++H + +S L
Sbjct: 61 LKPSAETLLHTQLYRLTPGAGAVLHTHSVEATVLSRL 97
>gnl|CDD|183460 PRK12348, sgaE, L-ribulose-5-phosphate 4-epimerase; Reviewed.
Length = 228
Score = 37.1 bits (86), Expect = 0.009
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 115 VDEEIFLV--NPHGLLYNEITASSLVKVDMRGDIIEPGTTNFGVNTATFSVHAAIHAARP 172
+D E LV P G+ Y + A +V VDM G ++E G +TAT H ++ P
Sbjct: 31 IDRERGLVVIKPSGVAYETMKADDMVVVDMSGKVVE-GEYRPSSDTAT---HLELYRRYP 86
Query: 173 DLKAIIHVATPAVVA 187
L I+H + A
Sbjct: 87 SLGGIVHTHSTHATA 101
>gnl|CDD|129843 TIGR00760, araD, L-ribulose-5-phosphate 4-epimerase. E. coli has
two genes, sgaE and sgbE (YiaS), that are very close
homologs of araD, the established L-ribulose-5-phosphate
4-epimerase of E. coli. SgbE, part of an operon for
L-xylulose metabolism, also has L-ribulose-5-phosphate
4-epimerase activity; L-xylulose-5-phosphate may be
converted into L-ribulose-5-phosphate by another product
of that operon. The homolog to this family from
Mycobacterium smegmatis is flanked by putative araB and
araA genes, consistent with it also being araD [Energy
metabolism, Sugars].
Length = 231
Score = 33.3 bits (76), Expect = 0.17
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 115 VDEE--IFLVNPHGLLYNEITASSLVKVDM-RGDIIEPGTTNFGVNTATFSVHAAIHAAR 171
+D E + ++ P G+ Y+ +TA +V VD+ G+++E G+ +T T H A++ A
Sbjct: 32 IDRERGLVVIKPSGVEYDVMTADDMVVVDLETGNVVE-GSKKPSSDTPT---HLALYRAF 87
Query: 172 PDLKAIIH 179
P + I+H
Sbjct: 88 PSIGGIVH 95
>gnl|CDD|233699 TIGR02050, gshA_cyan_rel, carboxylate-amine ligase, YbdK family.
This family represents a division of a larger family,
the other branch of which is predicted to act as
glutamate--cysteine ligase (the first of two enzymes in
glutathione biosynthesis) in the cyanobacteria. Species
containing this protein, however, are generally not
believe to make glutathione, and the function is
unknown.
Length = 287
Score = 33.5 bits (77), Expect = 0.18
Identities = 28/113 (24%), Positives = 39/113 (34%), Gaps = 24/113 (21%)
Query: 112 RLNVDEEIFLVNPHGLLYNEITASSLVKVDM-RGDI---IEPGTTNFGVNTAT--FSVHA 165
L V+EE+ LV+PH Y+ ++S V + R I + V AT + A
Sbjct: 1 TLGVEEELLLVDPHT--YDLAASASAVLIGACREKIGAGFKHELFESQVELATPVCTTLA 58
Query: 166 AIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESVVLGELSTHPFTGYSR 218
A I V V A S + THPF + R
Sbjct: 59 EAAA------QIRAVRARLVQAASDHGLRICG----------AGTHPFARWRR 95
>gnl|CDD|183459 PRK12347, sgbE, L-ribulose-5-phosphate 4-epimerase; Reviewed.
Length = 231
Score = 32.5 bits (74), Expect = 0.34
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 115 VDEE--IFLVNPHGLLYNEITASSLVKVDM-RGDIIEPGTTNFGVNTATFSVHAAIHAAR 171
VDE + ++ P G+ Y+ +TA +V V++ G ++E G+ +T T H A++
Sbjct: 32 VDETRQLMVIKPSGVEYDVMTADDMVVVEIASGKVVE-GSKKPSSDTPT---HLALYRRY 87
Query: 172 PDLKAIIH 179
P++ I+H
Sbjct: 88 PEIGGIVH 95
>gnl|CDD|225081 COG2170, COG2170, Uncharacterized conserved protein [Function
unknown].
Length = 369
Score = 32.4 bits (74), Expect = 0.41
Identities = 27/121 (22%), Positives = 41/121 (33%), Gaps = 25/121 (20%)
Query: 112 RLNVDEEIFLVNPHGLLYNEITASSLVKVDMRGDIIEPGT----TNFGVNTAT--FSVHA 165
L V+ E LV+P G Y+ + +S + ++G + T V AT + A
Sbjct: 4 TLGVELEFQLVDPQG--YDLVGSSDAIIEALKGKVTAGHLKHEITESTVELATGVCRLLA 61
Query: 166 AIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESVVLGELSTHPFTGYS-RGDEEKE 224
A L+ V A S GL THPF + + +
Sbjct: 62 EAAAQLRALRD------YLVQAASDH--GLRICG--------GGTHPFADWRRQEVPDNP 105
Query: 225 R 225
R
Sbjct: 106 R 106
>gnl|CDD|99727 cd06406, PB1_P67, A PB1 domain is present in p67 proteins which
forms a signaling complex with p40, a crucial step for
activation of NADPH oxidase during phagocytosis. PB1
domain is a modular domain mediating specific
protein-protein interactions which play a role in many
critical cell processes . A canonical PB1-PB1
interaction, which involves heterodimerization of two
PB1 domains, is required for the formation of
macromolecular signaling complexes ensuring specificity
and fidelity during cellular signaling. The interaction
between two PB1 domain depends on the type of PB1.
There are three types of PB1 domains: type I which
contains an OPCA motif, acidic aminoacid cluster, type
II which contains a basic cluster, and type I/II which
contains both an OPCA motif and a basic cluster.
Interactions of PB1 domains with other protein domains
have been described as noncanonical PB1-interactions.
The PB1 domain module is conserved in amoebas, fungi,
animals, and plants. The p67 proteins contain a type II
PB1 domain.
Length = 80
Score = 29.0 bits (65), Expect = 0.98
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 24 IEIQMKDGSGSATLLQSISDMMGLQGQRLQSAHLFRSSNCVVPINDIRGVESMGYAKGEK 83
+ IQ+ G ATLLQ IS + L + + ++ +S V ++D + AK
Sbjct: 13 VAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEASGEDVILSDTNMEDVWSQAKDGC 72
Query: 84 I-LRCKVA 90
+ L C +
Sbjct: 73 LTLWCTLT 80
>gnl|CDD|181527 PRK08660, PRK08660, L-fuculose phosphate aldolase; Provisional.
Length = 181
Score = 29.9 bits (68), Expect = 1.8
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 10/126 (7%)
Query: 131 EITASSLVKVDMRGDIIEPGTTNFGVNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSS 190
EIT +++V I + G+ + ++ T VH AI+ R KAI+H P VA+S
Sbjct: 44 EITEGDVIEVG----IDDDGSVDPLASSET-PVHRAIYR-RTSAKAIVHAHPPYAVALSL 97
Query: 191 LKCGLLPLSRESVVLGELSTHPFTGYSRGDEE-KERIVRNLGPNNKVLFLSNNGAVCCGE 249
L+ ++PL E + L T P G G E E + R L + V+ +G G+
Sbjct: 98 LEDEIVPLDSEGLYF--LGTIPVVGGDIGSGELAENVARALSEHKGVVVRG-HGTFAIGK 154
Query: 250 TVEEAF 255
T+EEA+
Sbjct: 155 TLEEAY 160
>gnl|CDD|237961 PRK15408, PRK15408, autoinducer 2-binding protein lsrB;
Provisional.
Length = 336
Score = 30.1 bits (68), Expect = 1.9
Identities = 27/66 (40%), Positives = 31/66 (46%), Gaps = 13/66 (19%)
Query: 151 TTNFGVNTATFSVHAA--IHAARPDLKAII---HVATPAVV-AVSSLKCGLLPLSRESVV 204
TT FG N AT S+ A I A PDL AII A PA A +LK R+ V
Sbjct: 185 TTQFGYNDATKSLQTAEGILKAYPDLDAIIAPDANALPAAAQAAENLK-------RDKVA 237
Query: 205 LGELST 210
+ ST
Sbjct: 238 IVGFST 243
>gnl|CDD|226425 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 29.3 bits (66), Expect = 2.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 14 RLFREELE---RIIEIQMKDGSGSATLLQSISDMMGL 47
R E LE I I ++GSG +TLL++I+ MG
Sbjct: 27 RHLEERLEFRAPITFITGENGSGKSTLLEAIAAGMGF 63
>gnl|CDD|217670 pfam03681, UPF0150, Uncharacterized protein family (UPF0150). This
family of small proteins is uncharacterized. In CC_3185
this domain is found next to a DNA binding
helix-turn-helix domain pfam01402, which suggests that
this is some kind of ligand binding domain. The
structure of this domain suggests that these domains
oligomerise and due to structural similarities may bind
to RNA. The monomer adopts an alpha-beta-beta-beta-alpha
fold and forms a homotetramer. Based on the properties
and functions of structural homologues of the HB8
monomer, the protein is speculated to be involved in RNA
metabolism, including RNA binding and cleavage.
Length = 48
Score = 26.6 bits (60), Expect = 3.1
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 243 GAVCCGETVEEAFYNVYNLVAAC 265
G + GET+EEA N +
Sbjct: 23 GCITQGETLEEALENAKEALELH 45
>gnl|CDD|173881 cd08516, PBP2_NikA_DppA_OppA_like_11, The substrate-binding
component of an uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system
contains the type 2 periplasmic binding fold. This CD
represents the substrate-binding domain of an
uncharacterized ATP-binding cassette (ABC) type
nickel/dipeptide/oligopeptide-like transporter. The
oligopeptide-binding protein OppA and the
dipeptide-binding protein DppA show significant sequence
similarity to NikA, the initial nickel receptor. The
DppA binds dipeptides and some tripeptides and is
involved in chemotaxis toward dipeptides, whereas the
OppA binds peptides of a wide range of lengths (2-35
amino acid residues) and plays a role in recycling of
cell wall peptides, which precludes any involvement in
chemotaxis. Most of other periplasmic binding proteins
are comprised of only two globular subdomains
corresponding to domains I and III of the
dipeptide/oligopeptide binding proteins. The structural
topology of these domains is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 457
Score = 28.4 bits (64), Expect = 7.1
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 78 YAKGEKILRCKVAAVYRLMD---LYGWTQNIQ 106
Y + ++IL V V+ L Y +N+Q
Sbjct: 425 YKELQQILAEDVPWVF-LYWRSQYYAMNKNVQ 455
Score = 28.4 bits (64), Expect = 7.1
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 363 YAKGEKILRCKVAAVYRLMD---LYGWTQNIQ 391
Y + ++IL V V+ L Y +N+Q
Sbjct: 425 YKELQQILAEDVPWVF-LYWRSQYYAMNKNVQ 455
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase
inhibitor.
Length = 497
Score = 28.4 bits (63), Expect = 8.5
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 16/87 (18%)
Query: 93 YRLMDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRGDIIEPGTT 152
YR D+YG I + A + +FL PHG YN I A+ G +
Sbjct: 323 YRECDIYGTIDFIFGNAAAVFQ-NCYLFLRRPHGKSYNVILAN--------------GRS 367
Query: 153 NFGVNTATFSVHAAIHAARPDLKAIIH 179
+ G NT FS+ + D + H
Sbjct: 368 DPGQNTG-FSLQSCRIRTSSDFSPVKH 393
>gnl|CDD|212129 cd11664, LamB_YcsF_like_2, uncharacterized proteins similar to the
Aspergillus nidulans lactam utilization protein LamB.
This bacterial subfamily of the LamB/YbgL family,
contains many well conserved uncharacterized proteins.
Although their molecular function is unknown, those
proteins show high sequence similarity to the
Aspergillus nidulans lactam utilization protein LamB,
which might be required for conversion of exogenous
2-pyrrolidinone to endogenous GABA.
Length = 238
Score = 27.8 bits (62), Expect = 8.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 320 RWRIGGMEFEALMRMLDNAKIPTGY 344
W IG E +M ++ +A I TG+
Sbjct: 13 PWTIGDGVDEEIMPLISSANIATGF 37
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.392
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,133,808
Number of extensions: 2058734
Number of successful extensions: 1877
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1840
Number of HSP's successfully gapped: 42
Length of query: 414
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 315
Effective length of database: 6,546,556
Effective search space: 2062165140
Effective search space used: 2062165140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)