RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14071
(414 letters)
>3ocr_A Class II aldolase/adducin domain protein; PSI-2, midwest center for
structural genomics, protein struc initiative, MCSG,
lyase; 1.95A {Pseudomonas syringae PV}
Length = 273
Score = 303 bits (777), Expect = e-102
Identities = 92/260 (35%), Positives = 141/260 (54%), Gaps = 22/260 (8%)
Query: 78 YAKGEKILRCKVAAVYRLMDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSL 137
+ E +R K+AA YRL L WT +I H +AR+ +E FL+N GLL++EITAS+L
Sbjct: 27 VSPQEWEVRVKLAAAYRLAALKRWTDHIYTHFSARVPGPDEHFLINAFGLLFDEITASNL 86
Query: 138 VKVDMRGDIIEPGTTNFGVNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLP 197
VKVD+ G I++ T G+N A + +H+AIHAAR DL+A++H T +AVS+ K GLLP
Sbjct: 87 VKVDIDGTIVD-DPTGLGINYAGYVIHSAIHAARHDLQAVLHTHTRDGIAVSAQKDGLLP 145
Query: 198 LSRES-VVLGELSTHPFTGYSRGDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFY 256
+S+ S G ++ H + G + E+ER+V +LG V+ L N+G + G +VE A
Sbjct: 146 ISQHSIAFSGRVAYHGYEGIALDLSERERLVADLGD-KSVMILRNHGLLTGGVSVEHAIQ 204
Query: 257 NVYNLVAACEAQLKLMPAGLDNLVLIPEDVRKEIYDSSRVCPEGAIPAGTNSPTPAVLEK 316
++ L AC Q+ AG LV P +V ++ + ++ +G
Sbjct: 205 QLHALEYACNIQIAAQSAGNAELVFPPREVIAKVEEQAKAIKDG---------------- 248
Query: 317 KEKRWRIGGMEFEALMRMLD 336
+ AL+R L+
Sbjct: 249 ---NGPGVARHWNALIRELE 265
Score = 55.8 bits (135), Expect = 5e-09
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 363 YAKGEKILRCKVAAVYRLMDLYGWTQNIQNHITV 396
+ E +R K+AA YRL L WT +I H +
Sbjct: 27 VSPQEWEVRVKLAAAYRLAALKRWTDHIYTHFSA 60
>2z7b_A MLR6791 protein; class II aldolase superfamily, lyase; 1.90A
{Mesorhizobium loti}
Length = 270
Score = 208 bits (530), Expect = 6e-65
Identities = 39/225 (17%), Positives = 87/225 (38%), Gaps = 19/225 (8%)
Query: 77 GYAKGEKILRCKVAAVYRLMDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASS 136
G + + ++ +++ G + HI+AR D F + L + IT
Sbjct: 33 GSFTMRRKVFEELVTATKILLNEGIM-DTFGHISARDPEDPASFFLAQ-KLAPSLITVDD 90
Query: 137 LVKVDMRGDIIEPGTTNFGVNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLL 196
+ + ++ G+ + + +H+ I+ RPD++ ++H +PAV+ + L
Sbjct: 91 IQRFNLDGETSDNR-----PSYLERYIHSEIYKTRPDVQCVLHTHSPAVLPYCFVDTPLR 145
Query: 197 PLSRESVVLGE-LSTHPFTGYSRGD--------EEKERIVRNLGPNNKVLFLSNNGAVCC 247
P++ +GE + + + + I +LG + V+ ++ +G V
Sbjct: 146 PVTHMGAFIGESVPVYEIRDKHGDETDLFGGSPDVCADIAESLG-SQTVVLMARHGVVNV 204
Query: 248 GETVEEAFYNVYNLVAACEAQLKLMPAGLDNLVLIPEDVRKEIYD 292
G++V E + + L A + G N+ + K
Sbjct: 205 GKSVREVVFRAFYLEQEAAALTAGLKIG--NVKYLSPGEIKTAGK 247
Score = 38.2 bits (89), Expect = 0.003
Identities = 4/35 (11%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 362 GYAKGEKILRCKVAAVYRLMDLYGWTQNIQNHITV 396
G + + ++ +++ G + HI+
Sbjct: 33 GSFTMRRKVFEELVTATKILLNEGIM-DTFGHISA 66
>1e4c_P L-fuculose 1-phosphate aldolase; aldolase (class II), bacterial
L-fucose metabolism; 1.66A {Escherichia coli} SCOP:
c.74.1.1 PDB: 1fua_A 2fua_A 3fua_A 4fua_A* 1dzv_P 1e4b_P
1e47_P* 1e48_P* 1dzz_P 1e46_P 1dzu_P 1dzy_P 1dzx_P
1dzw_P 1e49_P 1e4a_P
Length = 215
Score = 121 bits (307), Expect = 7e-33
Identities = 44/209 (21%), Positives = 79/209 (37%), Gaps = 12/209 (5%)
Query: 82 EKILRCKVAAVYRLMDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVD 141
L ++ M G Q +++ R ++ L+ P G+ Y ++T S +V +D
Sbjct: 3 RNKLARQIIDTCLEMTRLGLNQGTAGNVSVR---YQDGMLITPTGIPYEKLTESHIVFID 59
Query: 142 MRGDIIEPGTTNFGVNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRE 201
G E + + H A + +RPD A++H AVS L + +
Sbjct: 60 GNGKHEEGKL-----PQSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILNRSIPAIHYM 114
Query: 202 SVVLGELSTHPFTGYSR-GDEEK-ERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFYNVY 259
G S P Y+ G E E + L L L ++G + C +E+A + +
Sbjct: 115 IAAAGGNSI-PCAPYATFGTRELSEHVALALKNRKATL-LQHHGLIACEVNLEKALWLAH 172
Query: 260 NLVAACEAQLKLMPAGLDNLVLIPEDVRK 288
+ + L + VL E++
Sbjct: 173 EVEVLAQLYLTTLAITDPVPVLSDEEIAV 201
>1pvt_A Sugar-phosphate aldolase; structural genomics, PSI, protein
initiative, midwest center for structural genomics,
MCSG; 2.50A {Thermotoga maritima} SCOP: c.74.1.1
Length = 238
Score = 101 bits (254), Expect = 3e-25
Identities = 39/234 (16%), Positives = 75/234 (32%), Gaps = 36/234 (15%)
Query: 85 LRCKVAAVYRLMDLYGWTQNIQNHITARL-------------------NVDEEIFLVNPH 125
++ V + + G ++ +I+ RL + E L+
Sbjct: 6 TIREIQKVAYWLAIKGLSEANAGNISVRLDERPEGYEVKSVNEYGFDYDGPEMYLLITAT 65
Query: 126 GLLYNEITASSLVKVDMRGDIIEPGTTNFGVNTAT------FSVHAAIHAARPDLKAIIH 179
G E+ + + G T +HA P+ KAI+H
Sbjct: 66 GSRMREVYEDDSKICLLHVLPGKHYEILHGNGKPTSEFPTHLMIHAKFKEMNPEKKAIVH 125
Query: 180 VATPAVVAVSSLK------CGLLPLSRESVVL--GELSTHPFTGYSRGDEEKERIVRNLG 231
++ + +L+ ++ + E ++ +S F E + V
Sbjct: 126 THPLNLLTLMNLEEFQELLPKMMKIHPEVLIFFPQGISVVEFEKPG-SVELGLKTVEKSE 184
Query: 232 PNNKVLFLSNNGAVCCGETVEEAFYNVYNLVAACEAQLKLMPAGLDNLVLIPED 285
+ +G V G+ V EA+ V L A E L+++ G N +PE
Sbjct: 185 -GKDAVLWDKHGVVAFGKDVAEAYDRVEILEKAAEILLRVLSLG-RNPTGVPEG 236
>2opi_A L-fuculose-1-phosphate aldolase; L-fuculose-1-phosphate aldolas
structural genomics, PSI-2, protein structure
initiative; 2.50A {Bacteroides thetaiotaomicron}
Length = 212
Score = 87.3 bits (217), Expect = 4e-20
Identities = 37/210 (17%), Positives = 75/210 (35%), Gaps = 14/210 (6%)
Query: 82 EKILRCKVAAVYRLMDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVD 141
A +++ R E L++ G + + +
Sbjct: 3 TDEHIELFLAQAHRYGDAKLMLCSSGNLSWR---IGEEALISGTGSWVPTLAKEKVSICN 59
Query: 142 MRGDIIEPGTTNFGVNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRE 201
+ G + + H + RPD+ ++H + A+S +K +
Sbjct: 60 IASGTPTNG----VKPSMESTFHLGVLRERPDVNVVLHFQSEYATAISCMKNKPTNFNVT 115
Query: 202 SVVLGELSTH-PFTGYSR-GDEE-KERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFYNV 258
+ + + + P Y R G E + +V + +N VL L+N+G V CG+ ++ +
Sbjct: 116 AEIPCHVGSEIPVIPYYRPGSPELAKAVVEAMLKHNSVL-LTNHGQVVCGKDFDQVYERA 174
Query: 259 YNLVAACEAQLKLMPAGLDNLVLIPEDVRK 288
AC ++ +G D VL PE++
Sbjct: 175 TFFEMACRIIVQ---SGGDYSVLTPEEIED 201
>2fk5_A Fuculose-1-phosphate aldolase; class II aldolase, metal binding,
riken structural genomics/proteomics initiative, RSGI,
NPPSFA; 1.90A {Thermus thermophilus} PDB: 2flf_A
Length = 200
Score = 85.4 bits (212), Expect = 1e-19
Identities = 39/210 (18%), Positives = 67/210 (31%), Gaps = 23/210 (10%)
Query: 85 LRCKVAAVYRLMDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRG 144
L V + G + + R + FL+ G+ +T L++V + G
Sbjct: 5 LYAAFRQVGEDLFAQGLISATAGNFSVR---TKGGFLITKSGVQKARLTPEDLLEVPLEG 61
Query: 145 DIIE-PGTTNFGVNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESV 203
I E + VH ++ R +A++H VA+S L PL E
Sbjct: 62 PIPEGA--------SVESVVHREVY-RRTGARALVHAHPRVAVALSFHLSRLRPLDLEGQ 112
Query: 204 VLGELSTHPFTGYSR-GDEE-KERIVRNLGPNNKVLFLSNNGAVCCG------ETVEEAF 255
+ + EE + L + L L +GA G E + EA+
Sbjct: 113 HYLK-EVPVLAPKTVSATEEAALSVAEALREHRACL-LRGHGAFAVGLKEAPEEALLEAY 170
Query: 256 YNVYNLVAACEAQLKLMPAGLDNLVLIPED 285
+ L + + L L +
Sbjct: 171 GLMTTLEESAQILLYHRLWQGAGPALGGGE 200
>1k0w_A L-ribulose 5 phosphate 4-epimerase; aldolase, isomerase; 2.10A
{Escherichia coli} SCOP: c.74.1.1 PDB: 1jdi_A
Length = 231
Score = 84.0 bits (208), Expect = 9e-19
Identities = 32/224 (14%), Positives = 70/224 (31%), Gaps = 20/224 (8%)
Query: 83 KILRCKVAAVYRLMDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDM 142
+ L+ +V + + +++A + +F++ P G+ Y+ +TA +V V +
Sbjct: 3 EDLKRQVLEANLALPKHNLVTLTWGNVSAVDR-ERGVFVIKPSGVDYSIMTADDMVVVSI 61
Query: 143 RGDIIEPGTTNFGVNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRES 202
+ G +T T H ++ A P + I+H + + +
Sbjct: 62 ETGEVVEGAKKPSSDTPT---HRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTH 118
Query: 203 VVLGELSTHPFTGYSRGDEEKERIVRNLGPN--------------NKVLFLSNNGAVCCG 248
T P T E G + + ++G G
Sbjct: 119 ANYF-YGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWG 177
Query: 249 ETVEEAFYNVYNLVAACEAQLKLMPAGLDNLVLIPEDVRKEIYD 292
+ E+A +N L + L + + + + Y
Sbjct: 178 KNAEDAVHNAIVLEEVAYMGIFCRQLA-PQLPDMQQTLLNKHYL 220
>2v9l_A Rhamnulose-1-phosphate aldolase; entropy index, metal-binding,
oligomerization, zinc, lyase, class II, cytoplasm; HET:
PGO; 1.23A {Escherichia coli} PDB: 2uyv_A* 1ojr_A
2v9g_A* 1gt7_A* 2v9n_A* 2uyu_A* 2v9m_A* 2v9o_A 2v9e_A
2v9f_A 2v9i_A 2v29_A 2v2a_A* 2v2b_A
Length = 274
Score = 78.5 bits (193), Expect = 1e-16
Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 24/197 (12%)
Query: 114 NVDEEIFLVNPHGLLYNEITAS-----SLVKVDMRGDI--IEPGTTNFGVNTATFSVHAA 166
+ F+V G + + +VKVD G I G TN V T+ H
Sbjct: 64 LLANTPFIVTGSGKFFRNVQLDPAANLGIVKVDSDGAGYHILWGLTNEAVPTSELPAHFL 123
Query: 167 IHAAR-----PDLKAIIHVATPAVVAVS--------SLKCGLLPLSRESVV--LGELSTH 211
H R + I+H ++A++ L S E +V +
Sbjct: 124 SHCERIKATNGKDRVIMHCHATNLIALTYVLENDTAVFTRQLWEGSTECLVVFPDGVGIL 183
Query: 212 PFTGYSRGDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFYNVYNLVAACEAQLKL 271
P+ G + + + ++ +G G T++E F + + + +K+
Sbjct: 184 PW--MVPGTDAIGQATAQEMQKHSLVLWPFHGVFGSGPTLDETFGLIDTAEKSAQVLVKV 241
Query: 272 MPAGLDNLVLIPEDVRK 288
G + E++
Sbjct: 242 YSMGGMKQTISREELIA 258
>2irp_A Putative aldolase class 2 protein AQ_1979; aldehyde, enzymatic
mechanism; 2.40A {Aquifex aeolicus}
Length = 208
Score = 74.2 bits (183), Expect = 1e-15
Identities = 38/206 (18%), Positives = 74/206 (35%), Gaps = 31/206 (15%)
Query: 85 LRCKVAAVYRLMDLYGWTQ----NIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKV 140
++ R++ GW NI +A+ V EE + G ++T ++ +
Sbjct: 12 KVEEIIEAGRILHSRGWVPATSGNI----SAK--VSEEYIAITASGKHKGKLTPEDILLI 65
Query: 141 DMRGDIIEPGTTNFGVN-TATFSVHAAIHAARPDLKAIIHVATPAVVAVSSL-KCGLLPL 198
D G + G +A +H ++ P++ A++H +P +S + K + L
Sbjct: 66 DYEGRPVG------GGKPSAETLLHTTVYKLFPEVNAVVHTHSPNATVISIVEKKDFVEL 119
Query: 199 SRESVVLGELSTH--------PFTGYS----RGDEEKERIVRNLGPNNKVLFLSNNGAVC 246
++ H P +E E + L + +G
Sbjct: 120 EDYELLKAFPDIHTHEVKIKIPIFPNEQNIPLLAKEVENYFKTSEDKYGFL-IRGHGLYT 178
Query: 247 CGETVEEAFYNVYNLVAACEAQLKLM 272
G ++EEA + L E +LKL+
Sbjct: 179 WGRSMEEALIHTEALEFIFECELKLL 204
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.6 bits (146), Expect = 5e-10
Identities = 73/452 (16%), Positives = 137/452 (30%), Gaps = 142/452 (31%)
Query: 3 RRKRVEMIMNSRLFREELERI--------IEIQMKDGSGSATLLQSISDMMGLQGQRLQS 54
K+ EM+ + F EE+ RI I+ + + S + D + Q
Sbjct: 72 LSKQEEMV---QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 55 AHLFRSSNCVVPINDIR------------GVESMGYAKGEKILRCKVAAVYRLMDLYG-- 100
++ R P +R ++ + + G+ + V Y++
Sbjct: 129 YNVSRLQ----PYLKLRQALLELRPAKNVLIDGVLGS-GKTWVALDVCLSYKVQCKMDFK 183
Query: 101 --WTQNIQNHIT-ARLNVDEEIF--LVNPHGLLYNEITASSLVKVDMRGDIIEPGTTNFG 155
W + N E + L L +I + + D +I
Sbjct: 184 IFW-------LNLKNCNSPETVLEMLQK----LLYQIDPNWTSRSDHSSNIKLR------ 226
Query: 156 VNTATFSVHAAIHAARPDLKAII-------------HVATPAVVAVSSLKCGLLPLSRES 202
IH+ + +L+ ++ +V +L C +L +R
Sbjct: 227 -----------IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 203 VVLGELST---------HPFTGYSRGDEEKERIVRNLGPNNKVL---FLSNNGAVC--CG 248
V LS H + DE K +++ L + L L+ N
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 249 ETVEEA-----FYNVYNLVAACEAQLKLMPAGLDNLVLIPEDVRKEIYDSSRVCPEGA-I 302
E++ + + N C+ ++ + L+ L P + RK ++D V P A I
Sbjct: 335 ESIRDGLATWDNWKHVN----CDKLTTIIESSLNVLE--PAEYRK-MFDRLSVFPPSAHI 387
Query: 303 PAGT------NSPTPAV------------LEK--KEKRWRIGGMEFEALM---------- 332
P + V +EK KE I + E +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 333 RMLDNAKIPTGYSSN-CVVPINDIRGVESMGY 363
++D+ IP + S+ + P D Y
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLD-------QY 472
>3m4r_A Uncharacterized protein; short chain dehydrogenase, class II
aldolase, adducin head D carbohydrate metabolism,
structural genomics; 2.00A {Thermoplasma acidophilum}
Length = 222
Score = 49.0 bits (115), Expect = 7e-07
Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 8/123 (6%)
Query: 154 FGVNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRESVVLGELSTHPF 213
+ + SV +HA P K ++H A++++++ + L
Sbjct: 106 VNPSEPSPSVETFLHAFLPY-KFVMHSHADAILSITNTDLP------SDQIAKILGNVVV 158
Query: 214 TGYSR-GDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFYNVYNLVAACEAQLKLM 272
Y G + ++ + L +G + G+T +EA+ N+V+ E ++
Sbjct: 159 LPYIPPGFTLAKEVMNCFKKGIDGIVLRKHGLLTFGDTGKEAYDRHINIVSRAENFIREK 218
Query: 273 PAG 275
G
Sbjct: 219 TDG 221
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 4e-04
Identities = 56/289 (19%), Positives = 78/289 (26%), Gaps = 118/289 (40%)
Query: 96 MDLYG--------WTQNIQNHITARLNVD-EEIFLVNPHGL--------------LYNEI 132
MDLY W + NH +I + NP L Y+ +
Sbjct: 1633 MDLYKTSKAAQDVWNR-ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 133 TASSLVKVDMRGDIIEPGTTNFGVNTATFSVHAAIHAARPD--LKAIIHVAT----PAVV 186
++V ++ + I N + TF L A T PA+
Sbjct: 1692 IFETIVDGKLKTEKIFKEI-NEHSTSYTFR--------SEKGLLSA-----TQFTQPALT 1737
Query: 187 AVSS-----LK-CGLLPLSRESVV----LGELSTHPFTGYS------------------- 217
+ LK GL+P ++ LGE Y+
Sbjct: 1738 LMEKAAFEDLKSKGLIPA--DATFAGHSLGE--------YAALASLADVMSIESLVEVVF 1787
Query: 218 -RGD------EEKERIVRNLG-----PNNKVLFLSNNG--AVC------CGETVEEAFYN 257
RG E N G P S V G VE YN
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN 1847
Query: 258 VYN--LVAA--CEA---------QLKLMPAGLDNLV--LIPEDVRKEIY 291
V N VAA A +KL + L L E+V ++
Sbjct: 1848 VENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 35.0 bits (80), Expect = 0.056
Identities = 41/237 (17%), Positives = 72/237 (30%), Gaps = 69/237 (29%)
Query: 117 EEIFLVNPHGLLYNEITASSLVKVDMRGDIIEPGTTNFGVNTATFSVHAAIHAARPDLKA 176
E + LV P + AS L + + EP T F + + +L
Sbjct: 17 EHVLLV-PTASFFI---ASQL-QEQFNKILPEP-TEGFAADDEPTTP--------AELVG 62
Query: 177 --IIHVATPAVVAVSSLKCGLLPLSR---ESVVLGELSTHPFTGYSRGDEEKE-----RI 226
+ +V++ + +L L E+ L H + + +
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 227 VRN--------LGPNNKV----LFLS-NNG-----AVCCG-----ETVEE--AFYNVYN- 260
++N P +K LF + G A+ G + EE Y Y+
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182
Query: 261 ----LVAACEAQL-----------KLMPAGLDNLVLI--PEDVRKEIY-DSSRV-CP 298
L+ L K+ GL+ L + P + + Y S + CP
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Score = 29.6 bits (66), Expect = 2.3
Identities = 47/258 (18%), Positives = 76/258 (29%), Gaps = 80/258 (31%)
Query: 9 MIMNSRLFREELERIIEIQMKDGSGSATLLQSISDMMGLQGQRLQSAHLFRS-SNCVV-- 65
M+ S L +E+++ + + IS L N VV
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQV--EIS--------------LVNGAKNLVVSG 381
Query: 66 PINDIRGVESMGYAKGEKILRCKVAAVYRLMDLYGWTQNIQNHI--TARLNVDEEIFL-V 122
P + G+ LR K A + Q+ I + R FL V
Sbjct: 382 PPQSLYGLNLT--------LR-KAKAP---------SGLDQSRIPFSERKLKFSNRFLPV 423
Query: 123 N-P-HGLLYNEITASSLVKVDMRGDIIE--------P--GTTNFGVNTATFSVHAAIHAA 170
P H L AS L+ D+ + + P T + G + S +I
Sbjct: 424 ASPFHSHLLVP--ASDLINKDLVKNNVSFNAKDIQIPVYDTFD-GSDLRVLS--GSI--- 475
Query: 171 RPDL-KAIIHVAT--PAVVAVSS---LKCGLLPLSRESVVLGELSTHPFTGYSRGDEEKE 224
+ II + + L G S LG L+ G G
Sbjct: 476 SERIVDCIIRLPVKWETTTQFKATHILDFGPGGASG----LGVLTHRNKDG--TG----V 525
Query: 225 RIV----RNLGPNNKVLF 238
R++ ++ P++ F
Sbjct: 526 RVIVAGTLDINPDDDYGF 543
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.4 bits (71), Expect = 0.74
Identities = 19/123 (15%), Positives = 40/123 (32%), Gaps = 37/123 (30%)
Query: 259 YNLVAACEAQLKLMPAGLDNLVLIPEDVRKEIYDSSRVCPEGAIPAGTNSPTPAVLEKKE 318
+ LV+ EA + +G+ P ++ K + S V +G
Sbjct: 1015 FVLVSVVEA---FIASGIT----DPYEMYKYV-HVSEVG--NCSGSG------------- 1051
Query: 319 KRWRIGGME-FEALMRMLDNAKIPTGYSSNCVVP--INDI-RGVESMGY-AKGEKILRCK 373
+GG+ + + P ++ + IN + V + + G ++
Sbjct: 1052 ----MGGVSALRGMFKDRFK-DEPV--QNDILQESFINTMSAWVNMLLISSSG--PIKTP 1102
Query: 374 VAA 376
V A
Sbjct: 1103 VGA 1105
>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt,
gluconeogenesis, lipid synthesis, fatty acid
biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}
Length = 233
Score = 29.8 bits (68), Expect = 1.3
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 7/54 (12%)
Query: 233 NNKVLFLSNNGA---VCCGETVE--EAFYNVYNLVAACEAQLKLMPAGLDNLVL 281
K F + C GE + E + QL+ + NLV+
Sbjct: 104 KEKFDFFKSKNFKIVYCIGEELTTREKGFKAVKEF--LSEQLENIDLNYPNLVV 155
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 28.7 bits (65), Expect = 4.5
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 8 EMIMNSRLFREELERIIEIQMKD 30
E+++ L +E++ +I+EIQ+
Sbjct: 750 EIVVFRPLTKEQIRQIVEIQLSY 772
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga
maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Length = 60
Score = 26.1 bits (58), Expect = 4.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 280 VLIPEDVRKEIYDSSRVCPEGAI 302
VL PE D++ CP GAI
Sbjct: 34 VLQPETDLPCAKDAADSCPTGAI 56
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus
thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Length = 311
Score = 28.3 bits (64), Expect = 5.3
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 8 EMIMNSRLFREELERIIEIQMKD 30
E+++ L +E++ +I+EIQM
Sbjct: 209 EIVVFRPLTKEQIRQIVEIQMSY 231
>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function,
carboxylate-amine ligase, structure 2 function project,
S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB:
1tt4_A
Length = 372
Score = 28.1 bits (62), Expect = 5.7
Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 8/114 (7%)
Query: 115 VDEEIFLVNPHGL-LYNEITAS-SLVKVDMRGDIIEPGTTNFGVNTATFSVHAAIHAARP 172
++ E+ +VNP G L + + VK + ++ T + AT V I+ A
Sbjct: 16 IELEMQVVNPPGYDLSQDSSMLIDAVKNKITAGEVKHDITESMLELAT-DVCRDINQAAG 74
Query: 173 DLKAIIHVATPAVVAVSSLKCGLLPLSRESVVLGELSTHPFTGYSRGDEEKERI 226
A+ V A L + + R E
Sbjct: 75 QFSAMQKVVLQAAT-----DHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENF 123
>3myr_A Hydrogenase (NIFE) small subunit HYDA; [NIFE] hydrogenase,
photosynthetic P sulfur bacterium, iron-sulfur cluster,
NI-A state; HET: SF4; 2.10A {Allochromatium vinosum}
Length = 269
Score = 28.0 bits (62), Expect = 6.1
Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 14/110 (12%)
Query: 235 KVLFLSNNGAVCCGETVEEAFYNVYNLVAACEAQL----KLMPAGLDNLVLIPEDVRKEI 290
V++LS C E++ A + L L A + E
Sbjct: 5 SVIWLSFQECTGCTESLTRAHAPTLEDLILDFISLDYHHTLQAASGEAAEAARLQAMDEN 64
Query: 291 YDSSRVCPEGAIPAGTNSPTPAVLEKKEKRWRIGGMEF-EALMRMLDNAK 339
V +G+IP + + G LM +++A
Sbjct: 65 RGQYLVIVDGSIPGP---------DANPGFSTVAGHSNYSILMETVEHAA 105
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 27.7 bits (61), Expect = 6.8
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 263 AACEAQLKLMPAGLDNLVLIPEDVRKEIYDSSRV-----CPEGAIPAGTNSPTPAVLEKK 317
+ +A K GL NL+ + + S P G++ G +P +L
Sbjct: 67 ISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHVLMPWGSLLRGVLGSSPEMLRGM 126
Query: 318 EKRWRIGGM 326
R G
Sbjct: 127 AAVCRPGAS 135
>1jqk_A CODH, carbon monoxide dehydrogenase; rossmann fold, oxidoreductase;
2.80A {Rhodospirillum rubrum} SCOP: e.26.1.2
Length = 639
Score = 28.0 bits (62), Expect = 7.4
Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 12/95 (12%)
Query: 274 AGLDNLVLIPEDVRKEIYDSSRVCPEGAIPAGTNSPTPAVLEKKEKRWRIGGMEFEALMR 333
+ +P D K + + + AI A V K+ I G EA++
Sbjct: 361 NKISGATHVPFDEHKAVETAKTI-IRMAIAAFGRRDPNRVAIPAFKQKSIVGFSAEAVVA 419
Query: 334 MLDNAKIPTGYSSNCVVPIND------IRGVESMG 362
L P+ D I+G+
Sbjct: 420 ALAKVNADDPLK-----PLVDNVVNGNIQGIVLFV 449
>2rkh_A Putative APHA-like transcription factor; ZP_00208345.1, STRU
genomics, joint center for structural genomics, JCSG;
2.00A {Magnetospirillum magnetotacticum}
Length = 180
Score = 27.0 bits (59), Expect = 8.0
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 199 SRESV---VLGELSTHPFTGYSRGDEEKERIVRNLGPNNKVLFLS 240
+E+V LG +++ P + R +GP+ +++ +S
Sbjct: 10 PKEAVRLCALGTIASQPMRYSELAGSVRHFTSRIMGPSLELMGIS 54
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.392
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,389,421
Number of extensions: 395209
Number of successful extensions: 788
Number of sequences better than 10.0: 1
Number of HSP's gapped: 759
Number of HSP's successfully gapped: 42
Length of query: 414
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 318
Effective length of database: 4,021,377
Effective search space: 1278797886
Effective search space used: 1278797886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)