RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14071
(414 letters)
>d1pvta_ c.74.1.1 (A:) Putative sugar-phosphate aldolase {Thermotoga
maritima [TaxId: 2336]}
Length = 232
Score = 111 bits (279), Expect = 2e-29
Identities = 36/222 (16%), Positives = 69/222 (31%), Gaps = 31/222 (13%)
Query: 85 LRCKVAAVYRLMDLYGWTQNIQNHITARLNVDEE-------------------IFLVNPH 125
++ V + + G ++ +I+ RL+ E L+
Sbjct: 6 TIREIQKVAYWLAIKGLSEANAGNISVRLDERPEGYEVKSVNEYGFDYDGPEMYLLITAT 65
Query: 126 GLLYNEITASSLVKVDMR------GDIIEPGTTNFGVNTATFSVHAAIHAARPDLKAIIH 179
G E+ + +I+ +HA P+ KAI+H
Sbjct: 66 GSRMREVYEDDSKICLLHVLPGKHYEILHGNGKPTSEFPTHLMIHAKFKEMNPEKKAIVH 125
Query: 180 VATPAVVAVSSLKCGLLPLSRESVVLGELSTHPFTGYSRGDEEKERI------VRNLGPN 233
++ + +L+ L + + E+ G S + EK
Sbjct: 126 THPLNLLTLMNLEEFQELLPKMMKIHPEVLIFFPQGISVVEFEKPGSVELGLKTVEKSEG 185
Query: 234 NKVLFLSNNGAVCCGETVEEAFYNVYNLVAACEAQLKLMPAG 275
+ +G V G+ V EA+ V L A E L+++ G
Sbjct: 186 KDAVLWDKHGVVAFGKDVAEAYDRVEILEKAAEILLRVLSLG 227
Score = 27.9 bits (61), Expect = 2.1
Identities = 4/27 (14%), Positives = 12/27 (44%)
Query: 370 LRCKVAAVYRLMDLYGWTQNIQNHITV 396
++ V + + G ++ +I+V
Sbjct: 6 TIREIQKVAYWLAIKGLSEANAGNISV 32
>d1e4cp_ c.74.1.1 (P:) L-fuculose-1-phosphate aldolase {Escherichia
coli [TaxId: 562]}
Length = 206
Score = 105 bits (262), Expect = 3e-27
Identities = 41/207 (19%), Positives = 76/207 (36%), Gaps = 8/207 (3%)
Query: 82 EKILRCKVAAVYRLMDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVD 141
L ++ M G Q +++ R ++ L+ P G+ Y ++T S +V +D
Sbjct: 3 RNKLARQIIDTCLEMTRLGLNQGTAGNVSVR---YQDGMLITPTGIPYEKLTESHIVFID 59
Query: 142 MRGDIIEPGTTNFGVNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRE 201
G + + + H A + +RPD A++H AVS L + +
Sbjct: 60 GNGKHE-----EGKLPQSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILNRSIPAIHYM 114
Query: 202 SVVLGELSTHPFTGYSRGDEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFYNVYNL 261
G S + G E V N K L ++G + C +E+A + + +
Sbjct: 115 IAAAGGNSIPCAPYATFGTRELSEHVALALKNRKATLLQHHGLIACEVNLEKALWLAHEV 174
Query: 262 VAACEAQLKLMPAGLDNLVLIPEDVRK 288
+ L + VL E++
Sbjct: 175 EVLAQLYLTTLAITDPVPVLSDEEIAV 201
Score = 27.9 bits (61), Expect = 2.1
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 367 EKILRCKVAAVYRLMDLYGWTQNIQNHITV 396
L ++ M G Q +++V
Sbjct: 3 RNKLARQIIDTCLEMTRLGLNQGTAGNVSV 32
>d1ojra_ c.74.1.1 (A:) L-rhamnulose-1-phosphate aldolase
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 94.5 bits (234), Expect = 1e-22
Identities = 38/241 (15%), Positives = 73/241 (30%), Gaps = 46/241 (19%)
Query: 94 RLMDLYGWTQNIQNHITARLNVDE--------------------------EIFLVNPHGL 127
L GW + ++T RL+ + F+V G
Sbjct: 18 TDAWLKGWDERNGGNLTLRLDDADIAPYHDNFHQQPRYIPLSQPMPLLANTPFIVTGSGK 77
Query: 128 LYNEITAS-----SLVKVDMRGDIIE--PGTTNFGVNTATFSVHAAIHAAR-----PDLK 175
+ + +VKVD G G TN V T+ H H R +
Sbjct: 78 FFRNVQLDPAANLGIVKVDSDGAGYHILWGLTNEAVPTSELPAHFLSHCERIKATNGKDR 137
Query: 176 AIIHVATPAVVAVSSLK--------CGLLPLSRESVVLGELSTHPFTGYSRGDEEKERIV 227
I+H ++A++ + L S E +V+ G + +
Sbjct: 138 VIMHCHATNLIALTYVLENDTAVFTRQLWEGSTECLVVFPDGVGILPWMVPGTDAIGQAT 197
Query: 228 RNLGPNNKVLFLSNNGAVCCGETVEEAFYNVYNLVAACEAQLKLMPAGLDNLVLIPEDVR 287
+ ++ +G G T++E F + + + +K+ G + E++
Sbjct: 198 AQEMQKHSLVLWPFHGVFGSGPTLDETFGLIDTAEKSAQVLVKVYSMGGMKQTISREELI 257
Query: 288 K 288
Sbjct: 258 A 258
>d1k0wa_ c.74.1.1 (A:) L-ribulose-5-phosphate 4-epimerase
{Escherichia coli [TaxId: 562]}
Length = 223
Score = 90.7 bits (224), Expect = 9e-22
Identities = 28/221 (12%), Positives = 67/221 (30%), Gaps = 18/221 (8%)
Query: 85 LRCKVAAVYRLMDLYGWTQNIQNHITARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRG 144
L+ +V + + +++A + +F++ P G+ Y+ +TA +V V +
Sbjct: 5 LKRQVLEANLALPKHNLVTLTWGNVSAVDR-ERGVFVIKPSGVDYSIMTADDMVVVSIET 63
Query: 145 DIIEPGTTNFGVNTATFSVHAAIHAARPDLKAIIHVATPAVVAVSSLKCGLLPLSRES-- 202
+ ++ H ++ A P + I+H + + +
Sbjct: 64 GEVVE---GAKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHAN 120
Query: 203 -----VVLGELSTHPFTGYSRGDEEKERIVRNLG------PNNKVLFLSNNGAVCCGETV 251
+ T E IV + + ++G G+
Sbjct: 121 YFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNA 180
Query: 252 EEAFYNVYNLVAACEAQLKLMPAGLDNLVLIPEDVRKEIYD 292
E+A +N L + L + + + + Y
Sbjct: 181 EDAVHNAIVLEEVAYMGIFCRQLAP-QLPDMQQTLLNKHYL 220
>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus
[TaxId: 2261]}
Length = 66
Score = 24.7 bits (53), Expect = 6.4
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 262 VAACEAQLKLMPAGLDNLVL---IPEDVRKEIYDSSRVCPEGAI 302
+ C ++ G + E++ ++ CP AI
Sbjct: 18 ASLCPDVFEMNDEGKAQPKVEVIEDEELYNCAKEAMEACPVSAI 61
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 26.3 bits (57), Expect = 8.5
Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 18/178 (10%)
Query: 220 DEEKERIVRNLGPNNKVLFLSNNGAVCCGETVEEAFYNVYNLVAACEAQLKLMPAGLDNL 279
+ ERI + + V++ +N + +L A EA+ M ++N
Sbjct: 1209 GQVGERIKQTFKNDLFVIWSEDNDEK---LIIRCRVVRPKSLDAETEAEEDHMLKKIENT 1265
Query: 280 VLIPEDVRKEIYDSSRVCPEGAIPAGTNSPTPAVLEKKEKRWRIGGMEFEALMRMLDNAK 339
+L + + + RV + P+P KE W + + L ++
Sbjct: 1266 ML-ENITLRGVENIERVVM---MKYDRKVPSPTGEYVKEPEWVLET-DGVNLSEVMTVPG 1320
Query: 340 I-PTGYSSNCVVPINDIRGVESMGYAKGEKILRCKVAAVYRLMDLYGWTQNIQNHITV 396
I PT +N + I ++ G+E A + + +V V G N + H+ +
Sbjct: 1321 IDPTRIYTNSFIDIMEVLGIE----AGRAALYK-EVYNVIA---SDGSYVNYR-HMAL 1369
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.392
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,533,832
Number of extensions: 72153
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 8
Length of query: 414
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 326
Effective length of database: 1,199,356
Effective search space: 390990056
Effective search space used: 390990056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.2 bits)