Query psy14072
Match_columns 205
No_of_seqs 163 out of 1321
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 18:51:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1718|consensus 100.0 1.6E-45 3.5E-50 277.0 16.0 176 29-205 9-188 (198)
2 smart00195 DSPc Dual specifici 100.0 1E-33 2.2E-38 212.9 16.6 133 37-170 1-137 (138)
3 KOG1716|consensus 100.0 1.4E-31 3.1E-36 224.0 16.4 146 34-179 72-223 (285)
4 cd00127 DSPc Dual specificity 100.0 3.3E-31 7.1E-36 198.9 15.3 133 37-169 2-139 (139)
5 PF00782 DSPc: Dual specificit 100.0 1.3E-31 2.9E-36 199.9 11.5 127 44-171 1-133 (133)
6 KOG1717|consensus 100.0 2.9E-31 6.3E-36 213.0 12.4 149 29-177 164-317 (343)
7 PRK12361 hypothetical protein; 99.9 9.8E-27 2.1E-31 210.6 17.0 140 32-172 90-237 (547)
8 KOG1719|consensus 99.9 3.9E-24 8.4E-29 159.4 12.6 143 37-179 25-177 (183)
9 PTZ00242 protein tyrosine phos 99.9 3E-23 6.6E-28 160.7 15.2 137 36-174 10-160 (166)
10 PTZ00393 protein tyrosine phos 99.9 1.4E-23 3.1E-28 168.7 13.6 121 55-178 113-235 (241)
11 KOG1720|consensus 99.8 6.4E-20 1.4E-24 143.4 14.8 164 5-170 21-206 (225)
12 COG2453 CDC14 Predicted protei 99.7 3.6E-17 7.9E-22 128.4 12.4 101 75-178 70-171 (180)
13 PF03162 Y_phosphatase2: Tyros 99.7 2.4E-16 5.3E-21 121.8 7.4 135 34-172 4-150 (164)
14 KOG2836|consensus 99.6 8.9E-15 1.9E-19 107.0 11.5 113 55-170 38-154 (173)
15 TIGR01244 conserved hypothetic 99.6 6.8E-14 1.5E-18 104.9 11.9 110 37-153 2-126 (135)
16 PF05706 CDKN3: Cyclin-depende 99.5 8.6E-14 1.9E-18 106.3 6.5 90 55-145 68-168 (168)
17 smart00404 PTPc_motif Protein 99.4 8.9E-12 1.9E-16 88.1 10.7 89 79-167 4-101 (105)
18 smart00012 PTPc_DSPc Protein t 99.4 8.9E-12 1.9E-16 88.1 10.7 89 79-167 4-101 (105)
19 PF04273 DUF442: Putative phos 99.4 3.2E-12 6.9E-17 92.3 8.0 89 37-131 2-105 (110)
20 PLN02727 NAD kinase 99.2 1.9E-10 4.1E-15 107.2 10.5 96 43-141 262-371 (986)
21 cd00047 PTPc Protein tyrosine 99.1 3.2E-10 7E-15 92.0 9.8 83 85-167 138-227 (231)
22 COG5350 Predicted protein tyro 99.1 7.5E-10 1.6E-14 82.9 10.5 109 55-164 29-147 (172)
23 smart00194 PTPc Protein tyrosi 99.1 4.9E-10 1.1E-14 92.5 10.1 84 84-167 165-254 (258)
24 COG3453 Uncharacterized protei 99.1 2E-09 4.4E-14 77.5 10.7 109 36-151 2-125 (130)
25 PRK15375 pathogenicity island 98.9 8.8E-09 1.9E-13 91.0 11.2 95 79-173 425-530 (535)
26 PF13350 Y_phosphatase3: Tyros 98.9 5.7E-09 1.2E-13 80.6 8.3 106 39-146 15-158 (164)
27 KOG2283|consensus 98.9 9.9E-09 2.1E-13 90.2 8.8 113 58-171 53-173 (434)
28 KOG1572|consensus 98.8 8.3E-08 1.8E-12 77.0 11.1 115 35-152 58-188 (249)
29 PF04179 Init_tRNA_PT: Initiat 98.8 1.9E-07 4.1E-12 82.6 13.6 131 38-168 290-449 (451)
30 PF00102 Y_phosphatase: Protei 98.7 1.1E-07 2.3E-12 76.7 10.5 84 84-167 142-231 (235)
31 PHA02742 protein tyrosine phos 98.7 1.4E-07 3.1E-12 79.8 10.6 55 111-165 229-288 (303)
32 PF14566 PTPlike_phytase: Inos 98.7 5.3E-08 1.1E-12 74.2 7.0 58 76-135 91-148 (149)
33 PHA02747 protein tyrosine phos 98.7 1.9E-07 4E-12 79.4 10.2 54 112-165 230-288 (312)
34 PHA02740 protein tyrosine phos 98.6 3.3E-07 7.2E-12 77.4 11.2 56 111-166 221-281 (298)
35 PHA02746 protein tyrosine phos 98.6 2.3E-07 4.9E-12 79.3 10.3 56 112-167 248-308 (323)
36 PHA02738 hypothetical protein; 98.5 6.8E-07 1.5E-11 76.3 10.2 56 111-166 227-287 (320)
37 KOG2386|consensus 98.5 4E-07 8.6E-12 78.6 6.5 119 55-173 60-186 (393)
38 COG2365 Protein tyrosine/serin 98.4 1.8E-06 4E-11 71.1 9.3 63 97-159 121-184 (249)
39 KOG0792|consensus 98.3 2.1E-06 4.5E-11 81.1 8.7 84 84-167 1035-1124(1144)
40 COG5599 PTP2 Protein tyrosine 98.3 4.4E-06 9.6E-11 68.3 8.8 87 83-173 191-294 (302)
41 KOG0790|consensus 98.2 2.4E-06 5.2E-11 74.2 5.0 87 78-165 415-513 (600)
42 KOG0791|consensus 98.0 5.5E-05 1.2E-09 64.5 9.0 91 80-170 255-351 (374)
43 KOG0789|consensus 97.9 7.3E-05 1.6E-09 65.6 8.7 58 110-167 298-361 (415)
44 KOG0793|consensus 97.5 0.00026 5.6E-09 64.9 6.8 88 79-166 894-989 (1004)
45 KOG4228|consensus 97.0 0.0013 2.8E-08 63.2 5.7 92 84-178 702-804 (1087)
46 KOG4228|consensus 96.5 0.0068 1.5E-07 58.4 6.5 87 79-166 985-1078(1087)
47 PF14671 DSPn: Dual specificit 96.4 0.011 2.3E-07 44.5 6.1 66 87-153 40-112 (141)
48 KOG4471|consensus 95.8 0.02 4.4E-07 52.0 5.7 36 97-132 360-395 (717)
49 PF06602 Myotub-related: Myotu 93.2 0.25 5.5E-06 42.8 6.3 22 109-130 229-250 (353)
50 KOG1089|consensus 91.7 0.37 8.1E-06 44.0 5.4 28 102-129 334-362 (573)
51 COG0607 PspE Rhodanese-related 88.0 1.1 2.3E-05 31.2 4.4 68 57-139 18-86 (110)
52 PLN02160 thiosulfate sulfurtra 86.2 1.8 3.8E-05 32.2 4.9 74 61-140 31-107 (136)
53 cd01533 4RHOD_Repeat_2 Member 85.1 3.1 6.6E-05 29.2 5.5 27 110-139 65-91 (109)
54 cd01518 RHOD_YceA Member of th 84.4 1.6 3.5E-05 30.2 3.7 29 109-140 59-87 (101)
55 TIGR03865 PQQ_CXXCW PQQ-depend 82.2 6 0.00013 30.3 6.4 30 109-140 114-143 (162)
56 cd01448 TST_Repeat_1 Thiosulfa 81.7 4.2 9E-05 29.0 5.2 41 98-140 65-106 (122)
57 PF00581 Rhodanese: Rhodanese- 80.1 12 0.00025 25.7 7.0 77 60-140 14-98 (113)
58 cd01528 RHOD_2 Member of the R 79.2 6.8 0.00015 26.9 5.4 28 110-140 57-84 (101)
59 cd01443 Cdc25_Acr2p Cdc25 enzy 78.7 11 0.00023 26.6 6.5 19 110-128 65-83 (113)
60 cd01520 RHOD_YbbB Member of th 78.6 6.1 0.00013 28.6 5.3 32 107-140 82-113 (128)
61 cd01523 RHOD_Lact_B Member of 77.5 3 6.5E-05 28.6 3.1 30 108-140 58-87 (100)
62 cd01522 RHOD_1 Member of the R 75.3 6.7 0.00014 28.0 4.6 30 108-140 61-90 (117)
63 PRK13352 thiamine biosynthesis 73.0 50 0.0011 29.4 10.0 183 5-192 28-272 (431)
64 smart00400 ZnF_CHCC zinc finge 72.1 4.5 9.8E-05 24.9 2.6 32 115-148 23-54 (55)
65 PF03861 ANTAR: ANTAR domain; 71.6 7.1 0.00015 24.2 3.4 26 126-151 15-40 (56)
66 PRK00142 putative rhodanese-re 70.8 12 0.00025 32.0 5.7 28 110-140 170-197 (314)
67 PRK01415 hypothetical protein; 70.7 16 0.00034 30.2 6.2 30 108-140 168-197 (247)
68 PF03668 ATP_bind_2: P-loop AT 70.7 9.2 0.0002 32.2 4.9 35 95-129 219-260 (284)
69 cd01534 4RHOD_Repeat_3 Member 70.3 7.6 0.00017 26.3 3.8 28 110-140 55-82 (95)
70 COG2927 HolC DNA polymerase II 68.9 5.9 0.00013 29.9 3.1 23 98-120 16-38 (144)
71 PRK05320 rhodanese superfamily 67.8 14 0.00031 30.5 5.5 28 110-140 174-201 (257)
72 PRK10886 DnaA initiator-associ 66.4 19 0.00042 28.5 5.8 39 94-135 24-62 (196)
73 cd01444 GlpE_ST GlpE sulfurtra 65.8 20 0.00043 24.0 5.1 30 108-140 53-82 (96)
74 cd01447 Polysulfide_ST Polysul 65.1 8.8 0.00019 26.1 3.2 29 108-139 58-86 (103)
75 cd01529 4RHOD_Repeats Member o 64.7 9.8 0.00021 25.8 3.4 30 108-140 53-82 (96)
76 PRK13938 phosphoheptose isomer 63.8 25 0.00055 27.8 6.0 42 92-136 26-67 (196)
77 PRK05728 DNA polymerase III su 63.2 12 0.00027 27.9 3.9 28 94-121 12-39 (142)
78 cd01532 4RHOD_Repeat_1 Member 62.9 14 0.0003 24.9 3.9 29 110-139 49-77 (92)
79 TIGR02981 phageshock_pspE phag 62.8 27 0.00059 24.3 5.4 28 109-139 56-83 (101)
80 PF02673 BacA: Bacitracin resi 62.3 10 0.00022 31.5 3.6 27 119-147 159-185 (259)
81 PRK05416 glmZ(sRNA)-inactivati 61.9 15 0.00032 31.0 4.5 37 94-130 221-264 (288)
82 PF01807 zf-CHC2: CHC2 zinc fi 61.7 8.7 0.00019 26.7 2.7 36 115-152 54-89 (97)
83 cd01525 RHOD_Kc Member of the 61.2 14 0.00031 25.3 3.7 27 111-140 65-91 (105)
84 cd05567 PTS_IIB_mannitol PTS_I 61.1 10 0.00023 25.6 2.9 14 112-125 1-14 (87)
85 cd01526 RHOD_ThiF Member of th 60.7 13 0.00028 26.6 3.6 28 109-139 70-97 (122)
86 PRK12554 undecaprenyl pyrophos 60.5 9.7 0.00021 32.0 3.2 26 120-147 166-191 (276)
87 TIGR00753 undec_PP_bacA undeca 60.1 10 0.00022 31.4 3.2 26 120-147 160-185 (255)
88 PRK10287 thiosulfate:cyanide s 60.0 23 0.0005 24.9 4.6 28 109-139 58-85 (104)
89 COG0279 GmhA Phosphoheptose is 59.6 18 0.00038 28.1 4.2 34 93-129 23-56 (176)
90 PRK06646 DNA polymerase III su 59.0 16 0.00035 27.9 3.9 28 94-121 12-39 (154)
91 PRK00414 gmhA phosphoheptose i 59.0 40 0.00086 26.4 6.3 34 93-129 26-59 (192)
92 PRK00281 undecaprenyl pyrophos 58.4 12 0.00025 31.3 3.3 26 120-147 164-189 (268)
93 cd01519 RHOD_HSP67B2 Member of 56.7 19 0.0004 24.7 3.7 29 109-140 64-92 (106)
94 PRK06036 translation initiatio 56.7 25 0.00053 30.5 5.1 18 108-125 145-162 (339)
95 PF04364 DNA_pol3_chi: DNA pol 56.5 14 0.00031 27.3 3.2 25 97-121 15-39 (137)
96 PRK05772 translation initiatio 55.4 21 0.00045 31.2 4.5 14 108-121 164-177 (363)
97 TIGR00853 pts-lac PTS system, 55.3 12 0.00027 25.9 2.5 61 111-174 3-73 (95)
98 PLN02444 HMP-P synthase 55.1 1.5E+02 0.0032 27.7 9.8 183 4-191 187-426 (642)
99 COG1660 Predicted P-loop-conta 54.5 18 0.0004 30.2 3.7 35 95-129 220-261 (286)
100 TIGR03642 cas_csx13 CRISPR-ass 54.5 47 0.001 24.4 5.6 62 77-138 53-116 (124)
101 PF10302 DUF2407: DUF2407 ubiq 53.5 8.5 0.00018 27.0 1.5 11 111-121 85-95 (97)
102 cd01530 Cdc25 Cdc25 phosphatas 52.1 19 0.00041 25.9 3.2 25 108-134 65-90 (121)
103 COG0422 ThiC Thiamine biosynth 51.4 1.1E+02 0.0024 27.0 8.1 184 4-192 28-270 (432)
104 TIGR00512 salvage_mtnA S-methy 51.2 36 0.00079 29.3 5.2 14 108-121 140-157 (331)
105 TIGR02094 more_P_ylases alpha- 50.8 17 0.00036 34.0 3.4 39 111-152 160-201 (601)
106 PF06415 iPGM_N: BPG-independe 49.4 19 0.00041 29.3 3.0 47 85-134 36-84 (223)
107 PRK09629 bifunctional thiosulf 49.3 32 0.00068 32.3 4.9 30 108-140 220-249 (610)
108 PRK00162 glpE thiosulfate sulf 49.2 46 0.001 22.9 4.8 35 102-140 50-84 (108)
109 cd01531 Acr2p Eukaryotic arsen 49.1 46 0.001 23.2 4.8 21 109-129 60-80 (113)
110 PF02302 PTS_IIB: PTS system, 48.9 14 0.0003 24.7 2.0 13 113-125 1-13 (90)
111 cd01521 RHOD_PspE2 Member of t 48.1 29 0.00063 24.2 3.6 30 108-139 61-91 (110)
112 PRK09284 thiamine biosynthesis 47.9 2.4E+02 0.0051 26.3 10.5 182 4-192 182-422 (607)
113 PRK11493 sseA 3-mercaptopyruva 47.9 19 0.00041 30.0 3.0 30 108-140 228-257 (281)
114 PRK05569 flavodoxin; Provision 47.6 84 0.0018 22.7 6.2 90 77-173 50-140 (141)
115 KOG0235|consensus 46.9 62 0.0013 26.1 5.6 49 92-146 133-185 (214)
116 smart00450 RHOD Rhodanese Homo 46.5 60 0.0013 21.1 4.9 30 108-140 53-82 (100)
117 TIGR03167 tRNA_sel_U_synt tRNA 46.4 60 0.0013 27.7 5.8 29 109-139 72-100 (311)
118 PF13580 SIS_2: SIS domain; PD 45.1 61 0.0013 23.7 5.1 34 94-130 18-51 (138)
119 COG0794 GutQ Predicted sugar p 44.6 62 0.0013 25.9 5.2 37 96-138 27-63 (202)
120 COG3707 AmiR Response regulato 44.2 24 0.00053 27.9 2.8 24 128-151 149-172 (194)
121 cd04445 DEP_PLEK1 DEP (Disheve 43.4 27 0.00058 24.6 2.6 38 109-151 22-60 (99)
122 PRK05720 mtnA methylthioribose 43.3 62 0.0013 28.1 5.5 17 108-124 144-160 (344)
123 COG1968 BacA Undecaprenyl pyro 43.1 28 0.00061 29.1 3.2 26 120-147 165-190 (270)
124 COG1054 Predicted sulfurtransf 42.7 68 0.0015 27.3 5.4 72 40-122 105-183 (308)
125 cd05006 SIS_GmhA Phosphoheptos 42.4 1.5E+02 0.0033 22.5 7.9 33 94-129 16-48 (177)
126 PRK11449 putative deoxyribonuc 42.0 47 0.001 27.3 4.4 57 94-150 110-172 (258)
127 cd01527 RHOD_YgaP Member of th 40.8 45 0.00099 22.4 3.6 18 108-126 51-68 (99)
128 PLN02723 3-mercaptopyruvate su 40.6 46 0.00099 28.3 4.3 39 98-139 255-294 (320)
129 PRK11784 tRNA 2-selenouridine 40.5 77 0.0017 27.5 5.6 28 110-139 87-114 (345)
130 PHA02540 61 DNA primase; Provi 40.4 51 0.0011 28.5 4.5 38 112-152 52-90 (337)
131 PF09623 Cas_NE0113: CRISPR-as 40.4 81 0.0017 25.6 5.4 58 83-140 82-140 (224)
132 PRK10310 PTS system galactitol 39.9 28 0.0006 24.0 2.4 16 112-127 3-18 (94)
133 TIGR01245 trpD anthranilate ph 39.7 76 0.0016 27.2 5.5 96 100-200 90-197 (330)
134 cd01449 TST_Repeat_2 Thiosulfa 39.2 44 0.00096 23.3 3.4 29 109-140 76-104 (118)
135 PRK07411 hypothetical protein; 38.8 42 0.00091 29.5 3.8 29 109-140 340-368 (390)
136 PRK01269 tRNA s(4)U8 sulfurtra 38.1 70 0.0015 29.0 5.2 29 108-139 446-474 (482)
137 cd00158 RHOD Rhodanese Homolog 37.1 57 0.0012 20.9 3.5 28 108-138 47-74 (89)
138 smart00489 DEXDc3 DEAD-like he 36.4 90 0.002 26.1 5.4 37 98-134 14-50 (289)
139 smart00488 DEXDc2 DEAD-like he 36.4 90 0.002 26.1 5.4 37 98-134 14-50 (289)
140 PF03853 YjeF_N: YjeF-related 35.7 87 0.0019 23.9 4.8 68 98-170 10-79 (169)
141 PF13378 MR_MLE_C: Enolase C-t 35.3 52 0.0011 22.9 3.2 23 97-119 32-54 (111)
142 PF14532 Sigma54_activ_2: Sigm 34.7 1.1E+02 0.0025 22.0 5.1 87 95-184 5-107 (138)
143 PF13292 DXP_synthase_N: 1-deo 34.6 88 0.0019 26.2 4.8 36 76-119 234-269 (270)
144 PRK08334 translation initiatio 34.3 82 0.0018 27.5 4.8 13 109-122 159-171 (356)
145 PRK09590 celB cellobiose phosp 34.3 35 0.00075 24.1 2.2 83 112-197 2-96 (104)
146 KOG1004|consensus 34.0 1E+02 0.0022 25.0 4.8 40 110-151 184-223 (230)
147 PRK05600 thiamine biosynthesis 32.3 53 0.0011 28.7 3.4 25 112-139 333-357 (370)
148 cd01720 Sm_D2 The eukaryotic S 32.3 60 0.0013 22.2 3.0 28 101-128 4-31 (87)
149 PRK10499 PTS system N,N'-diace 32.0 52 0.0011 23.2 2.8 61 111-171 3-70 (106)
150 cd05564 PTS_IIB_chitobiose_lic 31.4 38 0.00083 23.3 1.9 57 113-172 1-67 (96)
151 PRK13936 phosphoheptose isomer 31.1 1.6E+02 0.0035 23.0 5.8 35 95-132 27-61 (197)
152 PF14698 ASL_C2: Argininosucci 31.0 1E+02 0.0022 20.0 3.8 25 126-151 4-28 (70)
153 PRK11493 sseA 3-mercaptopyruva 30.9 1.2E+02 0.0026 25.1 5.2 40 99-140 74-114 (281)
154 PRK08762 molybdopterin biosynt 30.9 1.2E+02 0.0026 26.3 5.5 29 109-140 55-83 (376)
155 COG4738 Predicted transcriptio 30.5 43 0.00093 24.3 2.1 32 120-152 23-54 (124)
156 PF09994 DUF2235: Uncharacteri 29.5 3.3E+02 0.0071 22.6 9.5 94 92-188 72-181 (277)
157 TIGR01391 dnaG DNA primase, ca 29.4 58 0.0013 28.9 3.2 36 115-152 55-90 (415)
158 COG3673 Uncharacterized conser 29.3 3.9E+02 0.0085 23.4 8.9 76 92-170 102-187 (423)
159 cd05566 PTS_IIB_galactitol PTS 29.1 63 0.0014 21.5 2.7 14 112-125 1-14 (89)
160 COG0084 TatD Mg-dependent DNas 28.7 95 0.0021 25.7 4.1 56 96-151 110-171 (256)
161 TIGR01460 HAD-SF-IIA Haloacid 28.4 3.1E+02 0.0067 21.9 7.2 72 96-168 15-99 (236)
162 PF01026 TatD_DNase: TatD rela 28.3 50 0.0011 26.9 2.5 40 94-133 107-146 (255)
163 cd01535 4RHOD_Repeat_4 Member 28.0 1.4E+02 0.003 22.1 4.7 24 109-134 47-70 (145)
164 TIGR01307 pgm_bpd_ind 2,3-bisp 27.8 88 0.0019 28.6 4.1 40 95-134 121-162 (501)
165 cd05565 PTS_IIB_lactose PTS_II 27.5 54 0.0012 23.0 2.2 60 113-175 2-71 (99)
166 PF04343 DUF488: Protein of un 27.2 2.3E+02 0.005 20.1 6.4 35 55-89 10-56 (122)
167 TIGR02093 P_ylase glycogen/sta 27.1 1.3E+02 0.0028 29.2 5.2 39 111-152 296-338 (794)
168 COG2897 SseA Rhodanese-related 27.1 56 0.0012 27.6 2.6 19 107-125 230-248 (285)
169 PRK06371 translation initiatio 26.7 78 0.0017 27.3 3.4 22 101-122 127-148 (329)
170 COG3265 GntK Gluconate kinase 26.6 59 0.0013 24.9 2.3 80 82-171 41-131 (161)
171 cd01524 RHOD_Pyr_redox Member 26.3 1.1E+02 0.0023 20.2 3.5 14 108-121 48-61 (90)
172 PRK02947 hypothetical protein; 26.1 1.4E+02 0.0031 24.3 4.8 33 94-129 23-55 (246)
173 PF01964 ThiC: ThiC family; I 26.0 4.8E+02 0.01 23.3 8.1 183 5-192 27-268 (420)
174 cd00133 PTS_IIB PTS_IIB: subun 25.9 51 0.0011 20.9 1.8 13 113-125 1-13 (84)
175 cd05563 PTS_IIB_ascorbate PTS_ 25.5 70 0.0015 21.1 2.4 15 113-127 1-15 (86)
176 TIGR03573 WbuX N-acetyl sugar 25.5 1.3E+02 0.0029 25.8 4.7 32 119-151 284-315 (343)
177 PRK14118 gpmA phosphoglyceromu 25.3 1.3E+02 0.0028 24.1 4.4 49 91-145 149-201 (227)
178 PF13344 Hydrolase_6: Haloacid 25.1 1.4E+02 0.0029 20.7 3.9 43 97-141 16-58 (101)
179 COG1440 CelA Phosphotransferas 25.0 72 0.0016 22.6 2.4 71 112-184 2-82 (102)
180 PRK05434 phosphoglyceromutase; 25.0 1.1E+02 0.0024 28.1 4.2 40 95-134 125-166 (507)
181 COG1228 HutI Imidazolonepropio 24.6 2.5E+02 0.0054 24.9 6.3 47 104-151 299-348 (406)
182 PRK05568 flavodoxin; Provision 24.5 1.4E+02 0.003 21.6 4.1 58 110-172 81-139 (142)
183 PF01451 LMWPc: Low molecular 24.4 87 0.0019 22.6 2.9 14 114-127 1-14 (138)
184 PF14420 Clr5: Clr5 domain 24.3 1.8E+02 0.0038 17.7 4.6 33 136-168 18-50 (54)
185 PF05186 Dpy-30: Dpy-30 motif; 24.2 64 0.0014 18.8 1.7 36 130-166 3-38 (42)
186 PRK01112 phosphoglyceromutase; 24.0 2E+02 0.0044 23.0 5.3 50 92-147 150-203 (228)
187 COG0182 Predicted translation 23.8 54 0.0012 28.2 1.9 31 108-138 147-181 (346)
188 cd04300 GT1_Glycogen_Phosphory 23.8 1.6E+02 0.0034 28.7 5.1 39 111-152 299-341 (797)
189 PLN02538 2,3-bisphosphoglycera 23.7 94 0.002 28.9 3.5 40 95-134 142-183 (558)
190 PF13147 Amidohydro_4: Amidohy 23.5 3E+02 0.0065 21.6 6.3 54 97-150 222-280 (304)
191 PRK14116 gpmA phosphoglyceromu 23.5 1.5E+02 0.0033 23.6 4.5 48 92-145 151-202 (228)
192 PRK14985 maltodextrin phosphor 23.3 1.5E+02 0.0032 28.8 4.9 39 111-152 301-343 (798)
193 PF04309 G3P_antiterm: Glycero 23.3 2E+02 0.0044 22.4 4.9 35 102-137 35-71 (175)
194 PF00270 DEAD: DEAD/DEAH box h 23.2 2.4E+02 0.0052 20.5 5.3 57 110-175 13-70 (169)
195 COG0696 GpmI Phosphoglyceromut 23.0 1.2E+02 0.0026 27.6 3.9 41 94-134 123-165 (509)
196 cd04299 GT1_Glycogen_Phosphory 22.9 1E+02 0.0022 30.0 3.7 38 112-152 248-289 (778)
197 PF03102 NeuB: NeuB family; I 22.8 1.3E+02 0.0029 24.6 4.0 68 55-123 66-153 (241)
198 cd07214 Pat17_isozyme_like Pat 22.6 1.1E+02 0.0024 26.4 3.7 42 111-153 37-85 (349)
199 cd00687 Terpene_cyclase_nonpla 22.6 1.5E+02 0.0032 24.5 4.4 24 129-152 231-254 (303)
200 TIGR00190 thiC thiamine biosyn 22.5 5.6E+02 0.012 22.9 9.9 181 5-191 28-268 (423)
201 TIGR01502 B_methylAsp_ase meth 22.5 1E+02 0.0022 27.4 3.5 52 98-149 335-395 (408)
202 TIGR00524 eIF-2B_rel eIF-2B al 22.3 1.1E+02 0.0023 26.0 3.4 16 107-122 115-130 (303)
203 PRK05986 cob(I)alamin adenolsy 22.0 2.1E+02 0.0046 22.6 4.8 30 109-138 20-50 (191)
204 cd01294 DHOase Dihydroorotase 22.0 1.7E+02 0.0037 24.8 4.7 55 98-152 113-183 (335)
205 TIGR00274 N-acetylmuramic acid 22.0 4.8E+02 0.01 21.9 7.3 45 95-142 41-88 (291)
206 PF12668 DUF3791: Protein of u 22.0 1.6E+02 0.0035 18.4 3.5 25 128-152 6-30 (62)
207 KOG1530|consensus 21.8 99 0.0021 23.0 2.7 75 50-127 29-104 (136)
208 cd00308 enolase_like Enolase-s 21.8 2.5E+02 0.0053 22.3 5.3 27 97-123 182-208 (229)
209 PF07287 DUF1446: Protein of u 21.7 96 0.0021 27.1 3.0 40 101-143 150-189 (362)
210 PF12554 MOZART1: Mitotic-spin 21.6 2E+02 0.0043 17.4 4.5 32 120-152 17-48 (48)
211 PF05562 WCOR413: Cold acclima 21.6 2E+02 0.0044 22.6 4.5 32 107-138 27-63 (187)
212 TIGR00644 recJ single-stranded 21.3 1.8E+02 0.0039 26.8 4.9 53 87-139 30-83 (539)
213 COG0406 phoE Broad specificity 20.9 1.3E+02 0.0029 23.2 3.6 34 91-124 123-158 (208)
214 cd07217 Pat17_PNPLA8_PNPLA9_li 20.9 1.7E+02 0.0037 25.3 4.4 37 113-152 39-75 (344)
215 PRK13937 phosphoheptose isomer 20.9 4E+02 0.0086 20.5 6.5 33 94-129 21-53 (188)
216 PRK14986 glycogen phosphorylas 20.8 1.8E+02 0.0039 28.4 4.9 39 111-152 312-354 (815)
217 PF08974 DUF1877: Domain of un 20.7 1.5E+02 0.0033 22.5 3.8 26 92-117 141-166 (167)
218 TIGR00197 yjeF_nterm yjeF N-te 20.7 2.7E+02 0.0058 22.0 5.3 39 100-138 34-72 (205)
219 PLN02150 terpene synthase/cycl 20.5 1.2E+02 0.0027 20.9 2.9 25 126-151 7-31 (96)
220 COG3414 SgaB Phosphotransferas 20.4 98 0.0021 21.4 2.3 16 112-127 2-17 (93)
221 PF00580 UvrD-helicase: UvrD/R 20.3 1.3E+02 0.0029 24.4 3.6 31 110-140 12-44 (315)
222 TIGR02689 ars_reduc_gluta arse 20.2 1.1E+02 0.0024 22.0 2.7 21 112-133 1-21 (126)
223 COG0358 DnaG DNA primase (bact 20.1 1.6E+02 0.0035 27.3 4.3 41 110-153 50-91 (568)
224 PRK05667 dnaG DNA primase; Val 20.1 1.2E+02 0.0026 28.3 3.5 37 115-153 57-93 (580)
225 PF12921 ATP13: Mitochondrial 20.0 2.5E+02 0.0055 20.3 4.6 32 142-174 72-103 (126)
No 1
>KOG1718|consensus
Probab=100.00 E-value=1.6e-45 Score=277.02 Aligned_cols=176 Identities=39% Similarity=0.745 Sum_probs=165.7
Q ss_pred CCCCCCCCceeeeCCEEEcCc-ccccc---ccCCcceEEEcCCCCCCCCCCCCceEEEEeecCCCCCChHHHHHHHHHHH
Q psy14072 29 SNSSQLFEVTEVCPGLLLCGA-TMVGR---TNHPVTCIVNAAPELPDPPLADTIKTVKIHILDSATEPLDSYFDQVADLV 104 (205)
Q Consensus 29 ~~~~~~~~~~~I~~~lylG~~-~a~~~---~~~gI~~VInl~~~~~~~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~fi 104 (205)
...++..++++|+++||+++- .+.++ +++||++|||.+.+.++..++ +++|..+|+.|.+...+.++|+.+.+.|
T Consensus 9 ~~~~~~~~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~pn~~l~-~~qy~kv~~~D~p~~~l~~hfD~vAD~I 87 (198)
T KOG1718|consen 9 EVQPSIGGMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEVPNTSLP-DIQYMKVPLEDTPQARLYDHFDPVADKI 87 (198)
T ss_pred ccCCCccchhhcCcceeEeccccccCHHHHHhcCceEEEEcccCCCCccCC-CceeEEEEcccCCcchhhhhhhHHHHHH
Confidence 456678889999999999966 77776 999999999999999988777 9999999999999999999999999999
Q ss_pred HHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHHHHhCCCceEeeecc
Q psy14072 105 QKIKDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMNFHQAFHYLRSLRPCIRPNLGFFKQLINYEKRFYAESSVEIVYNA 184 (205)
Q Consensus 105 ~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~vr~~rp~i~pn~~f~~~L~~~e~~l~~~~~~~~~~~~ 184 (205)
+....+|+++||||.+|+|||+++|+||||++.+|++.||+.++|++||.|.||.||.+||..||.+|+++++++++..+
T Consensus 88 ~~v~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~~sV~MV~~p 167 (198)
T KOG1718|consen 88 HSVIMRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGNASVRMVQTP 167 (198)
T ss_pred HHHHhcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCCCeEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccchhhhcccccCC
Q psy14072 185 AAQTYIPSVYEEDYSNMLTYQ 205 (205)
Q Consensus 185 ~~~~~~p~~~~~~~~~~~~~~ 205 (205)
.-...+||+||+|+|.|.|+|
T Consensus 168 ~~d~~iPDvye~e~R~m~~~~ 188 (198)
T KOG1718|consen 168 VGDQLIPDVYEKEARPMIPEQ 188 (198)
T ss_pred ccCccCchhhcccchhccccc
Confidence 333499999999999999986
No 2
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=100.00 E-value=1e-33 Score=212.89 Aligned_cols=133 Identities=33% Similarity=0.684 Sum_probs=123.4
Q ss_pred ceeeeCCEEEcCc-ccccc---ccCCcceEEEcCCCCCCCCCCCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCC
Q psy14072 37 VTEVCPGLLLCGA-TMVGR---TNHPVTCIVNAAPELPDPPLADTIKTVKIHILDSATEPLDSYFDQVADLVQKIKDEGG 112 (205)
Q Consensus 37 ~~~I~~~lylG~~-~a~~~---~~~gI~~VInl~~~~~~~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~fi~~~~~~~~ 112 (205)
+++|.|+||+|+. ++.+. ++.||++|||++.+.+.. .+.+++|+++|+.|....++.+.+..+++||+....+|+
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~-~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~ 79 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVPNL-NKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGG 79 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCCCC-CCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCC
Confidence 4789999999999 77776 889999999999886543 345899999999997777788999999999999999999
Q ss_pred eEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHH
Q psy14072 113 CTLIHCVAGVSRSASLCLAYLIKYNQMNFHQAFHYLRSLRPCIRPNLGFFKQLINYEK 170 (205)
Q Consensus 113 ~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~vr~~rp~i~pn~~f~~~L~~~e~ 170 (205)
+|||||.+|.|||+++++||||+..|+++++|+++|+++||.+.||++|.+||..||+
T Consensus 80 ~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~ 137 (138)
T smart00195 80 KVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYER 137 (138)
T ss_pred eEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999986
No 3
>KOG1716|consensus
Probab=99.98 E-value=1.4e-31 Score=224.01 Aligned_cols=146 Identities=32% Similarity=0.611 Sum_probs=136.0
Q ss_pred CCCceeeeCCEEEcCc-ccccc---ccCCcceEEEcCCCCCCCC--CCCCceEEEEeecCCCCCChHHHHHHHHHHHHHH
Q psy14072 34 LFEVTEVCPGLLLCGA-TMVGR---TNHPVTCIVNAAPELPDPP--LADTIKTVKIHILDSATEPLDSYFDQVADLVQKI 107 (205)
Q Consensus 34 ~~~~~~I~~~lylG~~-~a~~~---~~~gI~~VInl~~~~~~~~--~~~~~~~~~ipi~D~~~~~~~~~~~~~~~fi~~~ 107 (205)
..++.+|.|++|+|+. .+.+. ++.||++|+|+....+... ...+++|+++|+.|.+..++..+|+++++||+.+
T Consensus 72 ~~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a 151 (285)
T KOG1716|consen 72 GNPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKA 151 (285)
T ss_pred cCCceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHHHHH
Confidence 3578999999999999 78777 9999999999999987753 3348999999999999999999999999999999
Q ss_pred hcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHHHHhCCCceE
Q psy14072 108 KDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMNFHQAFHYLRSLRPCIRPNLGFFKQLINYEKRFYAESSVE 179 (205)
Q Consensus 108 ~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~vr~~rp~i~pn~~f~~~L~~~e~~l~~~~~~~ 179 (205)
+..|++|||||.+|+|||+++++||||+..+|++++|+++|+++||.+.||.+|+.||.+||+.+.......
T Consensus 152 ~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~~~~ 223 (285)
T KOG1716|consen 152 REKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKSPSQ 223 (285)
T ss_pred HhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999998876655
No 4
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.97 E-value=3.3e-31 Score=198.90 Aligned_cols=133 Identities=35% Similarity=0.703 Sum_probs=122.6
Q ss_pred ceeeeCCEEEcCc-ccccc---ccCCcceEEEcCCCCCC-CCCCCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCC
Q psy14072 37 VTEVCPGLLLCGA-TMVGR---TNHPVTCIVNAAPELPD-PPLADTIKTVKIHILDSATEPLDSYFDQVADLVQKIKDEG 111 (205)
Q Consensus 37 ~~~I~~~lylG~~-~a~~~---~~~gI~~VInl~~~~~~-~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~fi~~~~~~~ 111 (205)
+++|.|+||+|+. ++.+. ++.||++||||+.+.+. .....+++|+++|+.|....++...++.+++||+....++
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~ 81 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKG 81 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcC
Confidence 6899999999999 77766 78999999999988764 2234689999999999987788889999999999999899
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHH
Q psy14072 112 GCTLIHCVAGVSRSASLCLAYLIKYNQMNFHQAFHYLRSLRPCIRPNLGFFKQLINYE 169 (205)
Q Consensus 112 ~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~vr~~rp~i~pn~~f~~~L~~~e 169 (205)
++|||||.+|.|||++++++|+|+..++++++|+++||++||.+.||++|+.||.+||
T Consensus 82 ~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 82 GKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999996
No 5
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.97 E-value=1.3e-31 Score=199.90 Aligned_cols=127 Identities=38% Similarity=0.623 Sum_probs=117.0
Q ss_pred EEEcCc-ccccc---ccCCcceEEEcCCCCCCCC--CCCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCCeEEEE
Q psy14072 44 LLLCGA-TMVGR---TNHPVTCIVNAAPELPDPP--LADTIKTVKIHILDSATEPLDSYFDQVADLVQKIKDEGGCTLIH 117 (205)
Q Consensus 44 lylG~~-~a~~~---~~~gI~~VInl~~~~~~~~--~~~~~~~~~ipi~D~~~~~~~~~~~~~~~fi~~~~~~~~~VlVH 117 (205)
||+|+. .+. . +++||++|||++.+.+... ...++.|+++|+.|....++.+.++.+++||+.+..+|++||||
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVH 79 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVH 79 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEE
Confidence 799999 666 5 9999999999999876521 24589999999999778888999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHHH
Q psy14072 118 CVAGVSRSASLCLAYLIKYNQMNFHQAFHYLRSLRPCIRPNLGFFKQLINYEKR 171 (205)
Q Consensus 118 C~~G~~RS~~v~~ayLm~~~~~~~~~A~~~vr~~rp~i~pn~~f~~~L~~~e~~ 171 (205)
|.+|+|||+++++||||...+|++++|+++++++||.+.||++|+++|.+||++
T Consensus 80 C~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 80 CKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp ESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred eCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999974
No 6
>KOG1717|consensus
Probab=99.97 E-value=2.9e-31 Score=213.01 Aligned_cols=149 Identities=24% Similarity=0.473 Sum_probs=134.7
Q ss_pred CCCCCCCCceeeeCCEEEcCc-ccccc---ccCCcceEEEcCCCCCCCCC-CCCceEEEEeecCCCCCChHHHHHHHHHH
Q psy14072 29 SNSSQLFEVTEVCPGLLLCGA-TMVGR---TNHPVTCIVNAAPELPDPPL-ADTIKTVKIHILDSATEPLDSYFDQVADL 103 (205)
Q Consensus 29 ~~~~~~~~~~~I~~~lylG~~-~a~~~---~~~gI~~VInl~~~~~~~~~-~~~~~~~~ipi~D~~~~~~~~~~~~~~~f 103 (205)
.++....-+.+|+|+||+|+. ++.|. +++||++|||+++..++.+. ...+.|+.||+.|+....+..+|++++.|
T Consensus 164 ~G~~ra~FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnlpn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsf 243 (343)
T KOG1717|consen 164 DGPQRASFPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNLPNNFENNGEFIYKQIPISDHASQNLSQFFPEAISF 243 (343)
T ss_pred cCCcccCcchhhccchhcccccccccHHHHHhcCceEEEecCCCCcchhhcCCceeEEeeeccchhhhhhhhhhHHHHHH
Confidence 333445556799999999999 88887 99999999999998877643 25789999999999999999999999999
Q ss_pred HHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHHHHhCCCc
Q psy14072 104 VQKIKDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMNFHQAFHYLRSLRPCIRPNLGFFKQLINYEKRFYAESS 177 (205)
Q Consensus 104 i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~vr~~rp~i~pn~~f~~~L~~~e~~l~~~~~ 177 (205)
|++++.++..|||||.+|+|||+|+++||||++...++.+|+++|+.++..|.||-.|+-||..||+.|..+..
T Consensus 244 IdeArsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl~s~ 317 (343)
T KOG1717|consen 244 IDEARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGLESR 317 (343)
T ss_pred HHHhhccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998754433
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.95 E-value=9.8e-27 Score=210.62 Aligned_cols=140 Identities=16% Similarity=0.257 Sum_probs=124.1
Q ss_pred CCCCCceeeeCCEEEcCc-ccccc---ccCCcceEEEcCCCCCCC---CCCCCceEEEEeecCCCCCChHHHHHHHHHHH
Q psy14072 32 SQLFEVTEVCPGLLLCGA-TMVGR---TNHPVTCIVNAAPELPDP---PLADTIKTVKIHILDSATEPLDSYFDQVADLV 104 (205)
Q Consensus 32 ~~~~~~~~I~~~lylG~~-~a~~~---~~~gI~~VInl~~~~~~~---~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~fi 104 (205)
+..+.+++|.|+||+|+. .+.+. ++.||++||||+.+.+.. ....+++|+++|+.|...+. .++++++++||
T Consensus 90 ~~~~~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~-~~~l~~a~~~i 168 (547)
T PRK12361 90 DSVPAIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPT-LAQLNQAINWI 168 (547)
T ss_pred cCCCcceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCCc-HHHHHHHHHHH
Confidence 344668999999999999 87776 789999999999775432 23457899999999987765 68899999999
Q ss_pred HHHhcCCCeEEEEcCCCCChHHHHHHHHHHHh-CCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHHHH
Q psy14072 105 QKIKDEGGCTLIHCVAGVSRSASLCLAYLIKY-NQMNFHQAFHYLRSLRPCIRPNLGFFKQLINYEKRF 172 (205)
Q Consensus 105 ~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~-~~~~~~~A~~~vr~~rp~i~pn~~f~~~L~~~e~~l 172 (205)
++.+.+|++|||||.+|+|||+++++||||.. .++++++|+++||++||.+.||+.|+++|++|++..
T Consensus 169 ~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~ 237 (547)
T PRK12361 169 HRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQG 237 (547)
T ss_pred HHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999976 689999999999999999999999999999998754
No 8
>KOG1719|consensus
Probab=99.92 E-value=3.9e-24 Score=159.35 Aligned_cols=143 Identities=18% Similarity=0.224 Sum_probs=124.5
Q ss_pred ceeeeCCEEEcCc--ccccc---ccCCcceEEEcCCCCCCCC----C-CCCceEEEEeecCCCCCChHHHHHHHHHHHHH
Q psy14072 37 VTEVCPGLLLCGA--TMVGR---TNHPVTCIVNAAPELPDPP----L-ADTIKTVKIHILDSATEPLDSYFDQVADLVQK 106 (205)
Q Consensus 37 ~~~I~~~lylG~~--~a~~~---~~~gI~~VInl~~~~~~~~----~-~~~~~~~~ipi~D~~~~~~~~~~~~~~~fi~~ 106 (205)
+..+...+.+|.. ...+. +..|++.||.+..+.+-.. + ..+++++.+|..|....+....+.++++||+.
T Consensus 25 wy~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k 104 (183)
T KOG1719|consen 25 WYRIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHK 104 (183)
T ss_pred eeeecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHh
Confidence 3478888888887 33332 8899999999987754322 2 26999999999999888879999999999999
Q ss_pred HhcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHHHHhCCCceE
Q psy14072 107 IKDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMNFHQAFHYLRSLRPCIRPNLGFFKQLINYEKRFYAESSVE 179 (205)
Q Consensus 107 ~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~vr~~rp~i~pn~~f~~~L~~~e~~l~~~~~~~ 179 (205)
....|+.|+|||++|.+||+|+++||||...+|+.++|++++|++||.|...+++.+.|.+|.+.+....+.+
T Consensus 105 ~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~~~~~~ss~ 177 (183)
T KOG1719|consen 105 NASLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQIVANASSD 177 (183)
T ss_pred ccccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998876655544
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.91 E-value=3e-23 Score=160.72 Aligned_cols=137 Identities=23% Similarity=0.262 Sum_probs=110.3
Q ss_pred CceeeeCCEEEcCc-ccccc-------ccCCcceEEEcCCCCCCCC-C-CCCceEEEEeecCCCCCChHHHHHHHHHHHH
Q psy14072 36 EVTEVCPGLLLCGA-TMVGR-------TNHPVTCIVNAAPELPDPP-L-ADTIKTVKIHILDSATEPLDSYFDQVADLVQ 105 (205)
Q Consensus 36 ~~~~I~~~lylG~~-~a~~~-------~~~gI~~VInl~~~~~~~~-~-~~~~~~~~ipi~D~~~~~~~~~~~~~~~fi~ 105 (205)
.++.+.++++.-.. ..... ++.||++|||++.+..+.. + ..++.++++|+.|...++ .+.+.+++++++
T Consensus 10 ~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~-~~~i~~~~~~i~ 88 (166)
T PTZ00242 10 QIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPP-KAVIDNWLRLLD 88 (166)
T ss_pred ceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCC-HHHHHHHHHHHH
Confidence 45667777665555 22111 8899999999987543321 1 258999999999977665 666778888888
Q ss_pred HHhcC----CCeEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHHHHhC
Q psy14072 106 KIKDE----GGCTLIHCVAGVSRSASLCLAYLIKYNQMNFHQAFHYLRSLRPCIRPNLGFFKQLINYEKRFYA 174 (205)
Q Consensus 106 ~~~~~----~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~vr~~rp~i~pn~~f~~~L~~~e~~l~~ 174 (205)
+.+.. |++|+|||.+|+||||+++++|||...++++++|+.++|++||.. ++..|..+|.+|++.+..
T Consensus 89 ~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~-i~~~Q~~~l~~~~~~~~~ 160 (166)
T PTZ00242 89 QEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGA-INQTQLQFLKKYKPRKKA 160 (166)
T ss_pred HHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHhcc
Confidence 77644 999999999999999999999999999999999999999999976 589999999999986644
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.91 E-value=1.4e-23 Score=168.68 Aligned_cols=121 Identities=20% Similarity=0.245 Sum_probs=107.4
Q ss_pred ccCCcceEEEcCCCCCCCC--CCCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHH
Q psy14072 55 TNHPVTCIVNAAPELPDPP--LADTIKTVKIHILDSATEPLDSYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAY 132 (205)
Q Consensus 55 ~~~gI~~VInl~~~~~~~~--~~~~~~~~~ipi~D~~~~~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ay 132 (205)
++.||++||++++...+.. ...++.++++|+.|...++ .+.+++++++++..+..|++|+|||.+|+||||+++++|
T Consensus 113 k~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs-~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~Aay 191 (241)
T PTZ00393 113 KNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPT-VDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIV 191 (241)
T ss_pred HHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCC-HHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHH
Confidence 8899999999987654322 2369999999999988887 778889999999988899999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHHHHhCCCce
Q psy14072 133 LIKYNQMNFHQAFHYLRSLRPCIRPNLGFFKQLINYEKRFYAESSV 178 (205)
Q Consensus 133 Lm~~~~~~~~~A~~~vr~~rp~i~pn~~f~~~L~~~e~~l~~~~~~ 178 (205)
||. .|+++++|+++||++||.+ ++..|+++|.+|+++..+++.+
T Consensus 192 LI~-~GmspeeAI~~VR~~RPgA-In~~Q~~fL~~y~~~~~k~~~~ 235 (241)
T PTZ00393 192 LIE-FGMDPIDAIVFIRDRRKGA-INKRQLQFLKAYKKKKKKKNCL 235 (241)
T ss_pred HHH-cCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhccccchh
Confidence 996 7999999999999999987 6899999999999988776654
No 11
>KOG1720|consensus
Probab=99.84 E-value=6.4e-20 Score=143.36 Aligned_cols=164 Identities=22% Similarity=0.256 Sum_probs=130.4
Q ss_pred HHHhhhccCCccccccCCCCCCCCCCCCCCCCceeeeCCEEEcCc----ccc---cc-------------ccCCcceEEE
Q psy14072 5 EIFQENVKKPWQFFSSTKNHPQISSNSSQLFEVTEVCPGLLLCGA----TMV---GR-------------TNHPVTCIVN 64 (205)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~lylG~~----~a~---~~-------------~~~gI~~VIn 64 (205)
+..++.+-..|--+.+.+-+.-.....-.....++|.|+.+++=. .+. +. +.+++++++.
T Consensus 21 ~~~~r~~~~g~l~~~~~~~~~ye~ye~ve~gdfnwI~p~~~i~f~~p~~~s~gi~~~f~~~~~~~~~~~~~~~~v~s~vr 100 (225)
T KOG1720|consen 21 YGVWKALQSGWLDFSSFNVDEYEHYEAVENGDFNWIIPDRFIAFAGPHLKSRGIESGFPLHLPQPYIQYFKNNNVTSIVR 100 (225)
T ss_pred HHHHHHHhccccchheecchhheeeeccCCCCcceeccchhhhhcCccccccchhhcccccCChhHHHHhhhcccceEEE
Confidence 445555666677776666666656666667778889998544322 333 11 6678899999
Q ss_pred cCCCCCCCC--CCCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCCHH
Q psy14072 65 AAPELPDPP--LADTIKTVKIHILDSATEPLDSYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMNFH 142 (205)
Q Consensus 65 l~~~~~~~~--~~~~~~~~~ipi~D~~~~~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~ 142 (205)
+....++.. .+.|+.++++++.|...++ ...+.++++.++.+.. +++|.|||++|.|||+++++||||+.+|++..
T Consensus 101 ln~~~yd~~~f~~~Gi~h~~l~f~Dg~tP~-~~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~liAc~lmy~~g~ta~ 178 (225)
T KOG1720|consen 101 LNKRLYDAKRFTDAGIDHHDLFFADGSTPT-DAIVKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLIACYLMYEYGMTAG 178 (225)
T ss_pred cCCCCCChHHhcccCceeeeeecCCCCCCC-HHHHHHHHHHHHHHHh-cCeEEEEeccCCCchhHHHHHHHHHHhCCCHH
Confidence 988765432 2468999999999998887 6777888888888876 99999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCccCCHHHHHHHHHHHH
Q psy14072 143 QAFHYLRSLRPCIRPNLGFFKQLINYEK 170 (205)
Q Consensus 143 ~A~~~vr~~rp~i~pn~~f~~~L~~~e~ 170 (205)
||++++|..||.+...+.+...|.++..
T Consensus 179 eaI~~lR~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 179 EAIAWLRICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred HHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 9999999999999899998888887755
No 12
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.74 E-value=3.6e-17 Score=128.39 Aligned_cols=101 Identities=23% Similarity=0.439 Sum_probs=83.1
Q ss_pred CCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHh-CCCCHHHHHHHHHhhCC
Q psy14072 75 ADTIKTVKIHILDSATEPLDSYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLIKY-NQMNFHQAFHYLRSLRP 153 (205)
Q Consensus 75 ~~~~~~~~ipi~D~~~~~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~-~~~~~~~A~~~vr~~rp 153 (205)
+.++.++++|+.|...++ ...++++++||++...+|++|+|||.+|+|||||+++||||.. ..+..++|+..++.+||
T Consensus 70 ~~~~~~~~~~~~D~~~p~-~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r~ 148 (180)
T COG2453 70 NDGIQVLHLPILDGTVPD-LEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRRP 148 (180)
T ss_pred cCCceeeeeeecCCCCCc-HHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 468899999999999999 4899999999999999999999999999999999999999999 55667777777777777
Q ss_pred CccCCHHHHHHHHHHHHHHhCCCce
Q psy14072 154 CIRPNLGFFKQLINYEKRFYAESSV 178 (205)
Q Consensus 154 ~i~pn~~f~~~L~~~e~~l~~~~~~ 178 (205)
. +.....+++..++...+.+...
T Consensus 149 ~--~v~~~~q~~~~~e~~~~~~~~~ 171 (180)
T COG2453 149 G--AVVTEIQHLFELEQELFRKKEL 171 (180)
T ss_pred c--ccccHHHHHHHHHHHHHHhhcc
Confidence 5 5555555666666555444443
No 13
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.66 E-value=2.4e-16 Score=121.77 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=83.8
Q ss_pred CCCceeeeCCEEEcCc-ccccc---ccCCcceEEEcCCCCCCCCC-----CCCceEEEEeecCCCCC---ChHHHHHHHH
Q psy14072 34 LFEVTEVCPGLLLCGA-TMVGR---TNHPVTCIVNAAPELPDPPL-----ADTIKTVKIHILDSATE---PLDSYFDQVA 101 (205)
Q Consensus 34 ~~~~~~I~~~lylG~~-~a~~~---~~~gI~~VInl~~~~~~~~~-----~~~~~~~~ipi~D~~~~---~~~~~~~~~~ 101 (205)
..++..|.++||.|+. .+.+. +++|+++||+|+.+.+.... ..+++++++++.....+ ...+.+.+++
T Consensus 4 P~nF~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL 83 (164)
T PF03162_consen 4 PLNFGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEAL 83 (164)
T ss_dssp -TT-EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHH
T ss_pred CccccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHH
Confidence 3468899999999999 88887 88999999999988543321 37999999999876552 2245566666
Q ss_pred HHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHHHH
Q psy14072 102 DLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMNFHQAFHYLRSLRPCIRPNLGFFKQLINYEKRF 172 (205)
Q Consensus 102 ~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~vr~~rp~i~pn~~f~~~L~~~e~~l 172 (205)
+.|... .+.||||||..|.+|||+++++|- +.+||++..|++..+.--. ...+..-.+++..|+..+
T Consensus 84 ~~ild~--~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~f~~-~~~~~~~~~fIe~f~~~~ 150 (164)
T PF03162_consen 84 EIILDP--RNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRRFAG-PKIRYLDEQFIELFDVEL 150 (164)
T ss_dssp HHHH-G--GG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHHHHG-GG--HHHHHHHHT-----
T ss_pred HHHhCC--CCCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHHhcC-CCCcHHHHHHHHhcCcce
Confidence 665443 478999999999999999999999 7899999999998887532 244556666677776543
No 14
>KOG2836|consensus
Probab=99.62 E-value=8.9e-15 Score=107.04 Aligned_cols=113 Identities=26% Similarity=0.332 Sum_probs=93.1
Q ss_pred ccCCcceEEEcCCCCCCCC--CCCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhc--CCCeEEEEcCCCCChHHHHHH
Q psy14072 55 TNHPVTCIVNAAPELPDPP--LADTIKTVKIHILDSATEPLDSYFDQVADLVQKIKD--EGGCTLIHCVAGVSRSASLCL 130 (205)
Q Consensus 55 ~~~gI~~VInl~~~~~~~~--~~~~~~~~~ipi~D~~~~~~~~~~~~~~~fi~~~~~--~~~~VlVHC~~G~~RS~~v~~ 130 (205)
+++|+++||.+|+...+.. ..+|++.+.+|.+|...++ .+..++..+++....+ .|.-|.|||.+|+||++.+++
T Consensus 38 kKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp-~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlva 116 (173)
T KOG2836|consen 38 KKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPP-NQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVA 116 (173)
T ss_pred HhcCCeEEEEecccccCCchhhhcCceEeecccccCCCCc-hHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHH
Confidence 8999999999998876654 2479999999999987776 4444555444443333 489999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHH
Q psy14072 131 AYLIKYNQMNFHQAFHYLRSLRPCIRPNLGFFKQLINYEK 170 (205)
Q Consensus 131 ayLm~~~~~~~~~A~~~vr~~rp~i~pn~~f~~~L~~~e~ 170 (205)
..|+ ..||.+++|++++|.+|..+ .|..++.+|..|.-
T Consensus 117 lali-e~gmkyedave~ir~krrga-~n~kql~~lekyrp 154 (173)
T KOG2836|consen 117 LALI-EAGMKYEDAVEMIRQKRRGA-INSKQLLYLEKYRP 154 (173)
T ss_pred HHHH-HccccHHHHHHHHHHHhhcc-ccHHHHHHHHHhCc
Confidence 9998 78999999999999999864 89999999988854
No 15
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.56 E-value=6.8e-14 Score=104.93 Aligned_cols=110 Identities=11% Similarity=0.111 Sum_probs=83.2
Q ss_pred ceeeeCCEEEcCc-ccccc---ccCCcceEEEcCCCCCCCCC-----------CCCceEEEEeecCCCCCChHHHHHHHH
Q psy14072 37 VTEVCPGLLLCGA-TMVGR---TNHPVTCIVNAAPELPDPPL-----------ADTIKTVKIHILDSATEPLDSYFDQVA 101 (205)
Q Consensus 37 ~~~I~~~lylG~~-~a~~~---~~~gI~~VInl~~~~~~~~~-----------~~~~~~~~ipi~D~~~~~~~~~~~~~~ 101 (205)
+.+|.+.+|+++. +..+. +++||++|||+....+.... ..++.|+++|+..... + ......+.
T Consensus 2 ~~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~-~-~~~v~~f~ 79 (135)
T TIGR01244 2 IRKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDI-T-PDDVETFR 79 (135)
T ss_pred ceEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCC-C-HHHHHHHH
Confidence 4689999999999 87777 88999999999875432211 1589999999887543 2 22334444
Q ss_pred HHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHhhCC
Q psy14072 102 DLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMNFHQAFHYLRSLRP 153 (205)
Q Consensus 102 ~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~vr~~rp 153 (205)
++++ ...++||+||.+|. ||+++.+.++. ..|++.+++++..+..--
T Consensus 80 ~~~~---~~~~pvL~HC~sG~-Rt~~l~al~~~-~~g~~~~~i~~~~~~~G~ 126 (135)
T TIGR01244 80 AAIG---AAEGPVLAYCRSGT-RSSLLWGFRQA-AEGVPVEEIVRRAQAAGY 126 (135)
T ss_pred HHHH---hCCCCEEEEcCCCh-HHHHHHHHHHH-HcCCCHHHHHHHHHHcCC
Confidence 4444 34699999999999 99888877665 589999999999887753
No 16
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.47 E-value=8.6e-14 Score=106.34 Aligned_cols=90 Identities=18% Similarity=0.234 Sum_probs=59.4
Q ss_pred ccCCcceEEEcCCCCCCC--CC--------CCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEcCCCCCh
Q psy14072 55 TNHPVTCIVNAAPELPDP--PL--------ADTIKTVKIHILDSATEPLDSYFDQVADLVQKIKDEGGCTLIHCVAGVSR 124 (205)
Q Consensus 55 ~~~gI~~VInl~~~~~~~--~~--------~~~~~~~~ipi~D~~~~~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~R 124 (205)
+..|++.||.+....+-. .. ..|+.++++||.|...++.. ...++.+.+...+++|++|+|||..|.||
T Consensus 68 k~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~-~~~~i~~eL~~~L~~g~~V~vHC~GGlGR 146 (168)
T PF05706_consen 68 KDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFA-AAWQILEELAARLENGRKVLVHCRGGLGR 146 (168)
T ss_dssp HHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HH-HHHHHHHHHHHHHHTT--EEEE-SSSSSH
T ss_pred HHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHH-HHHHHHHHHHHHHHcCCEEEEECCCCCCH
Confidence 889999999998764211 11 27999999999999999844 44567888889999999999999999999
Q ss_pred HHHHHHHHHHHh-CCCCHHHHH
Q psy14072 125 SASLCLAYLIKY-NQMNFHQAF 145 (205)
Q Consensus 125 S~~v~~ayLm~~-~~~~~~~A~ 145 (205)
||++++++|+.. ..++.++|+
T Consensus 147 tGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 147 TGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHHHHHHHHHHcCCCChhhcC
Confidence 999999999865 458899886
No 17
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.37 E-value=8.9e-12 Score=88.12 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=68.7
Q ss_pred eEEEEeecCCCCCChHHHHHHHHHHHHHHhc---CCCeEEEEcCCCCChHHHHHHHHHHHhC------CCCHHHHHHHHH
Q psy14072 79 KTVKIHILDSATEPLDSYFDQVADLVQKIKD---EGGCTLIHCVAGVSRSASLCLAYLIKYN------QMNFHQAFHYLR 149 (205)
Q Consensus 79 ~~~~ipi~D~~~~~~~~~~~~~~~fi~~~~~---~~~~VlVHC~~G~~RS~~v~~ayLm~~~------~~~~~~A~~~vr 149 (205)
.|....+.|...+.....+.+++..++.... .+++|+|||.+|.||||+++++|++... ..++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 4555566677666545666666666666543 3789999999999999999999998762 368899999999
Q ss_pred hhCCCccCCHHHHHHHHH
Q psy14072 150 SLRPCIRPNLGFFKQLIN 167 (205)
Q Consensus 150 ~~rp~i~pn~~f~~~L~~ 167 (205)
..||....+..+...+..
T Consensus 84 ~~r~~~~~~~~q~~~~~~ 101 (105)
T smart00404 84 KQRPGMVQTFEQYLFLYR 101 (105)
T ss_pred hhhhhhCCcHHHHHHHHH
Confidence 999988888877776653
No 18
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.37 E-value=8.9e-12 Score=88.12 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=68.7
Q ss_pred eEEEEeecCCCCCChHHHHHHHHHHHHHHhc---CCCeEEEEcCCCCChHHHHHHHHHHHhC------CCCHHHHHHHHH
Q psy14072 79 KTVKIHILDSATEPLDSYFDQVADLVQKIKD---EGGCTLIHCVAGVSRSASLCLAYLIKYN------QMNFHQAFHYLR 149 (205)
Q Consensus 79 ~~~~ipi~D~~~~~~~~~~~~~~~fi~~~~~---~~~~VlVHC~~G~~RS~~v~~ayLm~~~------~~~~~~A~~~vr 149 (205)
.|....+.|...+.....+.+++..++.... .+++|+|||.+|.||||+++++|++... ..++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 4555566677666545666666666666543 3789999999999999999999998762 368899999999
Q ss_pred hhCCCccCCHHHHHHHHH
Q psy14072 150 SLRPCIRPNLGFFKQLIN 167 (205)
Q Consensus 150 ~~rp~i~pn~~f~~~L~~ 167 (205)
..||....+..+...+..
T Consensus 84 ~~r~~~~~~~~q~~~~~~ 101 (105)
T smart00012 84 KQRPGMVQTFEQYLFLYR 101 (105)
T ss_pred hhhhhhCCcHHHHHHHHH
Confidence 999988888877776653
No 19
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.36 E-value=3.2e-12 Score=92.34 Aligned_cols=89 Identities=19% Similarity=0.300 Sum_probs=54.6
Q ss_pred ceeeeCCEEEcCc-ccccc---ccCCcceEEEcCCCCCCCCC-----------CCCceEEEEeecCCCCCChHHHHHHHH
Q psy14072 37 VTEVCPGLLLCGA-TMVGR---TNHPVTCIVNAAPELPDPPL-----------ADTIKTVKIHILDSATEPLDSYFDQVA 101 (205)
Q Consensus 37 ~~~I~~~lylG~~-~a~~~---~~~gI~~VInl~~~~~~~~~-----------~~~~~~~~ipi~D~~~~~~~~~~~~~~ 101 (205)
+.+|.+.+++++. +..+. ++.||++|||+++..+.+.. ..|+.|+++|+..... + ...+..+.
T Consensus 2 i~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~-~-~~~v~~f~ 79 (110)
T PF04273_consen 2 IRQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAI-T-EEDVEAFA 79 (110)
T ss_dssp -EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT----HHHHHHHH
T ss_pred CEecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCC-C-HHHHHHHH
Confidence 5789999999999 88887 89999999999976543321 2799999999997543 2 33444444
Q ss_pred HHHHHHhcCCCeEEEEcCCCCChHHHHHHH
Q psy14072 102 DLVQKIKDEGGCTLIHCVAGVSRSASLCLA 131 (205)
Q Consensus 102 ~fi~~~~~~~~~VlVHC~~G~~RS~~v~~a 131 (205)
+.++. ..+|||+||.+|. ||+++.+.
T Consensus 80 ~~l~~---~~~Pvl~hC~sG~-Ra~~l~~l 105 (110)
T PF04273_consen 80 DALES---LPKPVLAHCRSGT-RASALWAL 105 (110)
T ss_dssp HHHHT---TTTSEEEE-SCSH-HHHHHHHH
T ss_pred HHHHh---CCCCEEEECCCCh-hHHHHHHH
Confidence 44443 4789999999996 88766543
No 20
>PLN02727 NAD kinase
Probab=99.16 E-value=1.9e-10 Score=107.25 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=76.1
Q ss_pred CEEEcCc-ccccc---ccCCcceEEEcCCCCCCC-CC---------CCCceEEEEeecCCCCCChHHHHHHHHHHHHHHh
Q psy14072 43 GLLLCGA-TMVGR---TNHPVTCIVNAAPELPDP-PL---------ADTIKTVKIHILDSATEPLDSYFDQVADLVQKIK 108 (205)
Q Consensus 43 ~lylG~~-~a~~~---~~~gI~~VInl~~~~~~~-~~---------~~~~~~~~ipi~D~~~~~~~~~~~~~~~fi~~~~ 108 (205)
.+|+++. ++.+. .++||++|||++++.+.. .+ ..|++|+++|+.+...++ .+.+.++.+++++
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt-~EqVe~fa~~l~~-- 338 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPS-AEQVEKFASLVSD-- 338 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCC-HHHHHHHHHHHHh--
Confidence 4899999 77776 778999999999876532 21 158999999998876666 5666666666644
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHHhCCCCH
Q psy14072 109 DEGGCTLIHCVAGVSRSASLCLAYLIKYNQMNF 141 (205)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~ 141 (205)
...+|||+||.+|..|+|+++++|+.+..+-..
T Consensus 339 slpkPVLvHCKSGarRAGamvA~yl~~~~~~~~ 371 (986)
T PLN02727 339 SSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSAE 371 (986)
T ss_pred hcCCCEEEECCCCCchHHHHHHHHHHHHcccch
Confidence 358999999999999999999999998766543
No 21
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.14 E-value=3.2e-10 Score=91.99 Aligned_cols=83 Identities=20% Similarity=0.272 Sum_probs=64.7
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHhc--CCCeEEEEcCCCCChHHHHHHHHHHHh-----CCCCHHHHHHHHHhhCCCccC
Q psy14072 85 ILDSATEPLDSYFDQVADLVQKIKD--EGGCTLIHCVAGVSRSASLCLAYLIKY-----NQMNFHQAFHYLRSLRPCIRP 157 (205)
Q Consensus 85 i~D~~~~~~~~~~~~~~~fi~~~~~--~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~vr~~rp~i~p 157 (205)
+.|...++....+.+++..++.... .+++|+|||.+|.||||++++++++.. ...++.+++..+|+.||.+..
T Consensus 138 W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~~~v~ 217 (231)
T cd00047 138 WPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMVQ 217 (231)
T ss_pred CCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccC
Confidence 5566555544555666666665542 478999999999999999999987654 368999999999999999888
Q ss_pred CHHHHHHHHH
Q psy14072 158 NLGFFKQLIN 167 (205)
Q Consensus 158 n~~f~~~L~~ 167 (205)
+..+..++..
T Consensus 218 ~~~Qy~f~~~ 227 (231)
T cd00047 218 TEEQYIFLYR 227 (231)
T ss_pred CHHHHHHHHH
Confidence 9888877753
No 22
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=99.13 E-value=7.5e-10 Score=82.94 Aligned_cols=109 Identities=24% Similarity=0.271 Sum_probs=83.6
Q ss_pred ccCCcceEEEcCCCCCCCCCCCCc---eEEEEeecCCCCCC------hHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChH
Q psy14072 55 TNHPVTCIVNAAPELPDPPLADTI---KTVKIHILDSATEP------LDSYFDQVADLVQKIKDEGGCTLIHCVAGVSRS 125 (205)
Q Consensus 55 ~~~gI~~VInl~~~~~~~~~~~~~---~~~~ipi~D~~~~~------~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS 125 (205)
.+.|-+++|++.........+..+ .++.+-+.|...++ -..+...+++|++++ .+..++||||.+|+|||
T Consensus 29 ~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~w-p~~apllIHC~aGISRS 107 (172)
T COG5350 29 ARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEW-PRFAPLLIHCYAGISRS 107 (172)
T ss_pred hhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcC-ccccceeeeeccccccc
Confidence 677889999998764443333222 45667666655442 357899999999997 57899999999999999
Q ss_pred HHHHH-HHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHH
Q psy14072 126 ASLCL-AYLIKYNQMNFHQAFHYLRSLRPCIRPNLGFFKQ 164 (205)
Q Consensus 126 ~~v~~-ayLm~~~~~~~~~A~~~vr~~rp~i~pn~~f~~~ 164 (205)
.+++. +.|.....+.-.+..+.++..+|.+.||+..+.-
T Consensus 108 tA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~RliaI 147 (172)
T COG5350 108 TAAALIAALALAPDMDETELAERLRALSPYATPNPRLIAI 147 (172)
T ss_pred hHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHHH
Confidence 76653 3455578899999999999999999999986543
No 23
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.12 E-value=4.9e-10 Score=92.49 Aligned_cols=84 Identities=19% Similarity=0.277 Sum_probs=63.5
Q ss_pred eecCCCCCChHHHHHHHHHHHHHHhcC-CCeEEEEcCCCCChHHHHHHHHHHHh-----CCCCHHHHHHHHHhhCCCccC
Q psy14072 84 HILDSATEPLDSYFDQVADLVQKIKDE-GGCTLIHCVAGVSRSASLCLAYLIKY-----NQMNFHQAFHYLRSLRPCIRP 157 (205)
Q Consensus 84 pi~D~~~~~~~~~~~~~~~fi~~~~~~-~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~vr~~rp~i~p 157 (205)
.+.|...+.....+.+++..++..... +++|+|||.+|.||||++++++++.. ...+..+++..+|+.||.+..
T Consensus 165 ~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~ 244 (258)
T smart00194 165 NWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQ 244 (258)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccC
Confidence 344555443334455555555554332 78999999999999999999988743 568999999999999999999
Q ss_pred CHHHHHHHHH
Q psy14072 158 NLGFFKQLIN 167 (205)
Q Consensus 158 n~~f~~~L~~ 167 (205)
+..+...+..
T Consensus 245 ~~~Qy~f~~~ 254 (258)
T smart00194 245 TEEQYIFLYR 254 (258)
T ss_pred CHHHHHHHHH
Confidence 9988887753
No 24
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.09 E-value=2e-09 Score=77.47 Aligned_cols=109 Identities=14% Similarity=0.165 Sum_probs=80.1
Q ss_pred CceeeeCCEEEcCc-ccccc---ccCCcceEEEcCCCCCCCCCC-----------CCceEEEEeecCCCCCChHHHHHHH
Q psy14072 36 EVTEVCPGLLLCGA-TMVGR---TNHPVTCIVNAAPELPDPPLA-----------DTIKTVKIHILDSATEPLDSYFDQV 100 (205)
Q Consensus 36 ~~~~I~~~lylG~~-~a~~~---~~~gI~~VInl~~~~~~~~~~-----------~~~~~~~ipi~D~~~~~~~~~~~~~ 100 (205)
.+.+|.+.+.+++. +..+. ++.|+++|||..+..+.+.-| .|+.|.++|+....... +.+
T Consensus 2 ~i~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~-----~dV 76 (130)
T COG3453 2 DIRRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITE-----ADV 76 (130)
T ss_pred CceecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCH-----HHH
Confidence 36789999999999 88777 999999999998876544322 68999999998876654 333
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q psy14072 101 ADLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMNFHQAFHYLRSL 151 (205)
Q Consensus 101 ~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~vr~~ 151 (205)
-.|-+..-..+++||.||++| .||.++-..-- ...||+.++...+-++.
T Consensus 77 ~~f~~Al~eaegPVlayCrsG-tRs~~ly~~~~-~~~gm~~de~~a~g~a~ 125 (130)
T COG3453 77 EAFQRALDEAEGPVLAYCRSG-TRSLNLYGLGE-LDGGMSRDEIEALGQAA 125 (130)
T ss_pred HHHHHHHHHhCCCEEeeecCC-chHHHHHHHHH-HhcCCCHHHHHHHHHhh
Confidence 334333334589999999999 57744433323 46899998887765544
No 25
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.94 E-value=8.8e-09 Score=91.02 Aligned_cols=95 Identities=23% Similarity=0.330 Sum_probs=71.2
Q ss_pred eEEEEeecCCCCCChHHHHHHHHHHHHHHhcCC---------CeEEEEcCCCCChHHHHHHHHHHHhCC-CCHHHHHHHH
Q psy14072 79 KTVKIHILDSATEPLDSYFDQVADLVQKIKDEG---------GCTLIHCVAGVSRSASLCLAYLIKYNQ-MNFHQAFHYL 148 (205)
Q Consensus 79 ~~~~ipi~D~~~~~~~~~~~~~~~fi~~~~~~~---------~~VlVHC~~G~~RS~~v~~ayLm~~~~-~~~~~A~~~v 148 (205)
+|+...|.|+..++....+.++.+.++.....+ ...+|||.+|+||||+++++|+++..+ .++++.+..+
T Consensus 425 QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dl 504 (535)
T PRK15375 425 VLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADF 504 (535)
T ss_pred EEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHH
Confidence 334446777766654445666666665542211 224799999999999999999997544 6799999999
Q ss_pred HhhCCC-ccCCHHHHHHHHHHHHHHh
Q psy14072 149 RSLRPC-IRPNLGFFKQLINYEKRFY 173 (205)
Q Consensus 149 r~~rp~-i~pn~~f~~~L~~~e~~l~ 173 (205)
|..|+. +.-...++..|.+....|.
T Consensus 505 R~qRng~MVQt~eQy~~l~~~~~~~~ 530 (535)
T PRK15375 505 RNSRNNRMLEDASQFVQLKAMQAQLL 530 (535)
T ss_pred HhcCCccccccHHHHHHHHHHHHHHh
Confidence 999997 8889999999998877664
No 26
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.92 E-value=5.7e-09 Score=80.58 Aligned_cols=106 Identities=21% Similarity=0.356 Sum_probs=54.5
Q ss_pred eeeCC-EEEcCc-ccccc------ccCCcceEEEcCCCCC-----CCCCCCCceEEEEeecCCCCCC---hHH-------
Q psy14072 39 EVCPG-LLLCGA-TMVGR------TNHPVTCIVNAAPELP-----DPPLADTIKTVKIHILDSATEP---LDS------- 95 (205)
Q Consensus 39 ~I~~~-lylG~~-~a~~~------~~~gI~~VInl~~~~~-----~~~~~~~~~~~~ipi~D~~~~~---~~~------- 95 (205)
.|-++ ||.++. ..... .+.||++||+++.+.+ +. ...+++++++|+.+..... +..
T Consensus 15 ~ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~-~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 93 (164)
T PF13350_consen 15 RIRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDP-LIDGVQYVHIPIFGDDASSPDKLAELLQSSAD 93 (164)
T ss_dssp TS-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS-----TT-EEEE--SS-S-TTH----------HHH
T ss_pred eecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCC-CcCCceeeeecccccccccccccccccccccc
Confidence 35555 899888 43332 8899999999987642 22 3359999999998876551 110
Q ss_pred ---HH------------HHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHH
Q psy14072 96 ---YF------------DQVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMNFHQAFH 146 (205)
Q Consensus 96 ---~~------------~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~ 146 (205)
.+ +...+++.......++|||||.+|.+|||.+++..| ...|.+.++.++
T Consensus 94 ~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll-~~lGV~~~~I~~ 158 (164)
T PF13350_consen 94 APRGMLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLL-SLLGVPDEDIIA 158 (164)
T ss_dssp HHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHH-HHTT--HHHHHH
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHH-HHcCCCHHHHHH
Confidence 00 122333333333457999999999999976665555 589999877654
No 27
>KOG2283|consensus
Probab=98.86 E-value=9.9e-09 Score=90.21 Aligned_cols=113 Identities=16% Similarity=0.133 Sum_probs=87.8
Q ss_pred CcceEEEcCCCCCCCCCCCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcC--CCeEEEEcCCCCChHHHHHHHHHHH
Q psy14072 58 PVTCIVNAAPELPDPPLADTIKTVKIHILDSATEPLDSYFDQVADLVQKIKDE--GGCTLIHCVAGVSRSASLCLAYLIK 135 (205)
Q Consensus 58 gI~~VInl~~~~~~~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~fi~~~~~~--~~~VlVHC~~G~~RS~~v~~ayLm~ 135 (205)
|=-.|-||+.+.....-...-....+++.|...++ .+.+..+++-++.++.. ..-|.|||.+|.+|||++++||||+
T Consensus 53 ~~y~vyNL~~er~yd~~~f~g~V~~~~~~Dh~~P~-L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~ 131 (434)
T KOG2283|consen 53 DHYKVYNLSSERLYDPSRFHGRVARFGFDDHNPPP-LELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIY 131 (434)
T ss_pred CceEEEecCccccCCccccccceeecCCCCCCCCc-HHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHh
Confidence 44458899964322211223355668999998888 77788888888888865 6789999999999999999999998
Q ss_pred hCCCC-HHHHHHHHHhhC---C--CccCCHHHHHHHHHHHHH
Q psy14072 136 YNQMN-FHQAFHYLRSLR---P--CIRPNLGFFKQLINYEKR 171 (205)
Q Consensus 136 ~~~~~-~~~A~~~vr~~r---p--~i~pn~~f~~~L~~~e~~ 171 (205)
..-.+ +++|+++.-.+| . ...--+.+.+++..|+..
T Consensus 132 ~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RYv~Y~~~~ 173 (434)
T KOG2283|consen 132 SGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRYVGYFSRV 173 (434)
T ss_pred hhhcCCHHHHHHHHhhhhccccccCCccCchhhHHHHHHHHH
Confidence 76655 999999999999 3 245667899999999884
No 28
>KOG1572|consensus
Probab=98.79 E-value=8.3e-08 Score=77.01 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=88.8
Q ss_pred CCceeeeCCEEEcCc-ccccc---ccCCcceEEEcCCCCCCCC-----CCCCceEEEEeecCCC----CC---ChHHHHH
Q psy14072 35 FEVTEVCPGLLLCGA-TMVGR---TNHPVTCIVNAAPELPDPP-----LADTIKTVKIHILDSA----TE---PLDSYFD 98 (205)
Q Consensus 35 ~~~~~I~~~lylG~~-~a~~~---~~~gI~~VInl~~~~~~~~-----~~~~~~~~~ipi~D~~----~~---~~~~~~~ 98 (205)
.+++-|.++||.+++ ...+. +..+.++||.++++..... ...++++.++-+.... .+ ...+.+.
T Consensus 58 lnFs~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~ 137 (249)
T KOG1572|consen 58 LNFSMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIR 137 (249)
T ss_pred ccccccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHH
Confidence 446778889999999 88887 8899999999999963221 1378999999887765 22 2345566
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHhhC
Q psy14072 99 QVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMNFHQAFHYLRSLR 152 (205)
Q Consensus 99 ~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~vr~~r 152 (205)
.++.++- ...+.++||||..|..|+|+++.+.- +.++|+..-.++.-++.-
T Consensus 138 ~~l~~ll--d~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~fa 188 (249)
T KOG1572|consen 138 KALKVLL--DKRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLRFA 188 (249)
T ss_pred HHHHHHh--cccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHHhc
Confidence 6666633 34689999999999999999998877 789999888887655553
No 29
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=98.76 E-value=1.9e-07 Score=82.64 Aligned_cols=131 Identities=17% Similarity=0.277 Sum_probs=104.9
Q ss_pred eeeeCCEEEcCc-cccc------c-ccCCcceEEEcCCCCCC-CCCCCCceEEEEeecCCCCC--ChHHHHHHHHHHHHH
Q psy14072 38 TEVCPGLLLCGA-TMVG------R-TNHPVTCIVNAAPELPD-PPLADTIKTVKIHILDSATE--PLDSYFDQVADLVQK 106 (205)
Q Consensus 38 ~~I~~~lylG~~-~a~~------~-~~~gI~~VInl~~~~~~-~~~~~~~~~~~ipi~D~~~~--~~~~~~~~~~~fi~~ 106 (205)
..++++||+|.. .... . ....+..||+|...... ........++++++..+... .+...+++++.|+..
T Consensus 290 ~~~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~ 369 (451)
T PF04179_consen 290 DPGTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPKESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRS 369 (451)
T ss_pred ccCCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccccccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHH
Confidence 346788999999 5111 1 56678899999987643 23445789999999887665 488999999999999
Q ss_pred HhcC--CCeEEEEcCCCCChHHHHHHHHHHHhCCC----------------CHHHHHHHHHhhCCCccCCHHHHHHHHHH
Q psy14072 107 IKDE--GGCTLIHCVAGVSRSASLCLAYLIKYNQM----------------NFHQAFHYLRSLRPCIRPNLGFFKQLINY 168 (205)
Q Consensus 107 ~~~~--~~~VlVHC~~G~~RS~~v~~ayLm~~~~~----------------~~~~A~~~vr~~rp~i~pn~~f~~~L~~~ 168 (205)
.+.. +++|+|+|..|.+.|+++++|.|+..+.. ...+-+.++-+.+|.++|+++.++++-.|
T Consensus 370 ~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 370 HLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred HhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 9888 99999999999999999999999987542 13455777888889999999999988766
No 30
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.74 E-value=1.1e-07 Score=76.69 Aligned_cols=84 Identities=23% Similarity=0.350 Sum_probs=61.3
Q ss_pred eecCCCCCChHHHHHHHHHHHHHHh-cCCCeEEEEcCCCCChHHHHHHHHHHHh-----CCCCHHHHHHHHHhhCCCccC
Q psy14072 84 HILDSATEPLDSYFDQVADLVQKIK-DEGGCTLIHCVAGVSRSASLCLAYLIKY-----NQMNFHQAFHYLRSLRPCIRP 157 (205)
Q Consensus 84 pi~D~~~~~~~~~~~~~~~fi~~~~-~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~vr~~rp~i~p 157 (205)
.+.|...+.....+-.+++.+.... ..+++|+|||.+|.||||+++++.++.. ...+..+++..+|+.||..-.
T Consensus 142 ~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~ 221 (235)
T PF00102_consen 142 NWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQ 221 (235)
T ss_dssp SSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSS
T ss_pred eccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccC
Confidence 3334333322333444444444443 3469999999999999999999988754 457899999999999999989
Q ss_pred CHHHHHHHHH
Q psy14072 158 NLGFFKQLIN 167 (205)
Q Consensus 158 n~~f~~~L~~ 167 (205)
+..++.++..
T Consensus 222 ~~~qy~f~~~ 231 (235)
T PF00102_consen 222 SPEQYRFCYM 231 (235)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9988887764
No 31
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.70 E-value=1.4e-07 Score=79.83 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=45.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHHh-----CCCCHHHHHHHHHhhCCCccCCHHHHHHH
Q psy14072 111 GGCTLIHCVAGVSRSASLCLAYLIKY-----NQMNFHQAFHYLRSLRPCIRPNLGFFKQL 165 (205)
Q Consensus 111 ~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~vr~~rp~i~pn~~f~~~L 165 (205)
.+||+|||.+|+||||++++...+.. ...+..+++..+|+.|+....+..+..++
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~ 288 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQYIFC 288 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHHHHHHH
Confidence 47999999999999999998776542 35678899999999999888888766554
No 32
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.69 E-value=5.3e-08 Score=74.18 Aligned_cols=58 Identities=19% Similarity=0.368 Sum_probs=45.6
Q ss_pred CCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHH
Q psy14072 76 DTIKTVKIHILDSATEPLDSYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLIK 135 (205)
Q Consensus 76 ~~~~~~~ipi~D~~~~~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~ 135 (205)
.++.|+++|+.|...+. ...|+++++|+... ..+..+.+||.+|.|||.+..+.|.|.
T Consensus 91 ~g~~Y~Ripitd~~~P~-~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 91 NGLRYYRIPITDHQAPD-PEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp TT-EEEEEEE-TTS----HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCcCCCC-HHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999998777 88999999999987 789999999999999999888888774
No 33
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.66 E-value=1.9e-07 Score=79.45 Aligned_cols=54 Identities=15% Similarity=0.262 Sum_probs=46.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHH-----hCCCCHHHHHHHHHhhCCCccCCHHHHHHH
Q psy14072 112 GCTLIHCVAGVSRSASLCLAYLIK-----YNQMNFHQAFHYLRSLRPCIRPNLGFFKQL 165 (205)
Q Consensus 112 ~~VlVHC~~G~~RS~~v~~ayLm~-----~~~~~~~~A~~~vr~~rp~i~pn~~f~~~L 165 (205)
+||+|||.+|+||||++++...+. ....+..+++..+|..|+....+..+..++
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFI 288 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 699999999999999999886543 356789999999999999988888877766
No 34
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.65 E-value=3.3e-07 Score=77.40 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=46.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHH-----hCCCCHHHHHHHHHhhCCCccCCHHHHHHHH
Q psy14072 111 GGCTLIHCVAGVSRSASLCLAYLIK-----YNQMNFHQAFHYLRSLRPCIRPNLGFFKQLI 166 (205)
Q Consensus 111 ~~~VlVHC~~G~~RS~~v~~ayLm~-----~~~~~~~~A~~~vr~~rp~i~pn~~f~~~L~ 166 (205)
.+||+|||.+|+||||++++...+. ....+..+++..+|..|+....+..+..+..
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt~~QY~F~y 281 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDDYVFCY 281 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccccCCHHHHHHHH
Confidence 4799999999999999999776654 3557899999999999998888887666554
No 35
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.65 E-value=2.3e-07 Score=79.27 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=47.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHH-----hCCCCHHHHHHHHHhhCCCccCCHHHHHHHHH
Q psy14072 112 GCTLIHCVAGVSRSASLCLAYLIK-----YNQMNFHQAFHYLRSLRPCIRPNLGFFKQLIN 167 (205)
Q Consensus 112 ~~VlVHC~~G~~RS~~v~~ayLm~-----~~~~~~~~A~~~vr~~rp~i~pn~~f~~~L~~ 167 (205)
+||+|||.+|+||||++++...+. ....+..+++..+|..|+....+..+..++.+
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~QY~F~y~ 308 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYAFCYK 308 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccCCCHHHHHHHHH
Confidence 799999999999999999865543 35688999999999999998888887776653
No 36
>PHA02738 hypothetical protein; Provisional
Probab=98.54 E-value=6.8e-07 Score=76.27 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=45.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHH-----hCCCCHHHHHHHHHhhCCCccCCHHHHHHHH
Q psy14072 111 GGCTLIHCVAGVSRSASLCLAYLIK-----YNQMNFHQAFHYLRSLRPCIRPNLGFFKQLI 166 (205)
Q Consensus 111 ~~~VlVHC~~G~~RS~~v~~ayLm~-----~~~~~~~~A~~~vr~~rp~i~pn~~f~~~L~ 166 (205)
.+||+|||.+|+||||++++.-.+. ....+..+++..+|.+|+....+..+..++.
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY~F~y 287 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFFCY 287 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHHHHHH
Confidence 3699999999999999988766533 2457899999999999998888887776553
No 37
>KOG2386|consensus
Probab=98.45 E-value=4e-07 Score=78.64 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=92.2
Q ss_pred ccCCcceEEEcCCCCCCC---C-CCCCceEEEEeecCCCCCC----hHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHH
Q psy14072 55 TNHPVTCIVNAAPELPDP---P-LADTIKTVKIHILDSATEP----LDSYFDQVADLVQKIKDEGGCTLIHCVAGVSRSA 126 (205)
Q Consensus 55 ~~~gI~~VInl~~~~~~~---~-~~~~~~~~~ipi~D~~~~~----~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~ 126 (205)
+...+.-+|+++...-.. . ...++.|+.+........+ .......+-.|.......++-|+|||++|.+|++
T Consensus 60 ~~~~vgl~iDltnt~ryy~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~Nrtg 139 (393)
T KOG2386|consen 60 HNYKVGLKIDLTNTLRYYDKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTG 139 (393)
T ss_pred cCceEEEEEeccceeeeeccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccc
Confidence 566788999998875322 1 2368899988877765321 2233455556777777789999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHHHHh
Q psy14072 127 SLCLAYLIKYNQMNFHQAFHYLRSLRPCIRPNLGFFKQLINYEKRFY 173 (205)
Q Consensus 127 ~v~~ayLm~~~~~~~~~A~~~vr~~rp~i~pn~~f~~~L~~~e~~l~ 173 (205)
-++++|||...+|+..+|+..+...||...-.......|...+....
T Consensus 140 yLI~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~~~~ 186 (393)
T KOG2386|consen 140 YLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHDIF 186 (393)
T ss_pred eeeeeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhcccccc
Confidence 99999999999999999999999999876667777888876665443
No 38
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.41 E-value=1.8e-06 Score=71.10 Aligned_cols=63 Identities=25% Similarity=0.306 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhcCC-CeEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCH
Q psy14072 97 FDQVADLVQKIKDEG-GCTLIHCVAGVSRSASLCLAYLIKYNQMNFHQAFHYLRSLRPCIRPNL 159 (205)
Q Consensus 97 ~~~~~~fi~~~~~~~-~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~vr~~rp~i~pn~ 159 (205)
.+.+..++...+..+ ++||+||.+|..|+|.++++|+....+.....+-++++..++......
T Consensus 121 ~e~~~~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 121 AERLVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred HHHHHHHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 355555555555555 999999999999999999999998777777777888888876544444
No 39
>KOG0792|consensus
Probab=98.33 E-value=2.1e-06 Score=81.11 Aligned_cols=84 Identities=19% Similarity=0.305 Sum_probs=65.7
Q ss_pred eecCCCCCChHHHHHHHHHHHHHHhcC-CCeEEEEcCCCCChHHHHHHH----HHHHh-CCCCHHHHHHHHHhhCCCccC
Q psy14072 84 HILDSATEPLDSYFDQVADLVQKIKDE-GGCTLIHCVAGVSRSASLCLA----YLIKY-NQMNFHQAFHYLRSLRPCIRP 157 (205)
Q Consensus 84 pi~D~~~~~~~~~~~~~~~fi~~~~~~-~~~VlVHC~~G~~RS~~v~~a----yLm~~-~~~~~~~A~~~vr~~rp~i~p 157 (205)
-|.|+..++-.+.|-+.++.|+...+. +-+|+|||.+|+||||+++++ ||+.. .-...-+.++.+|.+|-.+.+
T Consensus 1035 aWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQ 1114 (1144)
T KOG0792|consen 1035 AWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQ 1114 (1144)
T ss_pred ccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcc
Confidence 566777776677777777777777666 669999999999999999854 44432 456788999999999998889
Q ss_pred CHHHHHHHHH
Q psy14072 158 NLGFFKQLIN 167 (205)
Q Consensus 158 n~~f~~~L~~ 167 (205)
+..+..+..+
T Consensus 1115 T~~QYkFVye 1124 (1144)
T KOG0792|consen 1115 TLSQYKFVYE 1124 (1144)
T ss_pred chHHhhHHHH
Confidence 9987776653
No 40
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.30 E-value=4.4e-06 Score=68.28 Aligned_cols=87 Identities=22% Similarity=0.294 Sum_probs=62.6
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHhc---CCCeEEEEcCCCCChHHHHHHHHHHHhCC-----------CC---HHHHH
Q psy14072 83 IHILDSATEPLDSYFDQVADLVQKIKD---EGGCTLIHCVAGVSRSASLCLAYLIKYNQ-----------MN---FHQAF 145 (205)
Q Consensus 83 ipi~D~~~~~~~~~~~~~~~fi~~~~~---~~~~VlVHC~~G~~RS~~v~~ayLm~~~~-----------~~---~~~A~ 145 (205)
..+.|...++ +.+..++++.... ++++++|||.||+||+|++++.-.+...- ++ ..+.+
T Consensus 191 ~nW~D~~~p~----i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV 266 (302)
T COG5599 191 INWVDFNVPD----IRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIV 266 (302)
T ss_pred cCccccCCcC----HHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHH
Confidence 3667776664 4667777776552 57999999999999999999877665421 11 34566
Q ss_pred HHHHhhCCCccCCHHHHHHHHHHHHHHh
Q psy14072 146 HYLRSLRPCIRPNLGFFKQLINYEKRFY 173 (205)
Q Consensus 146 ~~vr~~rp~i~pn~~f~~~L~~~e~~l~ 173 (205)
..+|++|-.+.-|..++.+|..--..|+
T Consensus 267 ~~LRsQRmkmVQn~~Qf~flY~~~~~l~ 294 (302)
T COG5599 267 LSLRSQRMKMVQNKTQFKFLYDAFLELN 294 (302)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 7888998777778788877776656555
No 41
>KOG0790|consensus
Probab=98.17 E-value=2.4e-06 Score=74.21 Aligned_cols=87 Identities=15% Similarity=0.316 Sum_probs=60.2
Q ss_pred ceEEEEeecCCCCCC----hHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHH----Hh----CCCCHHHHH
Q psy14072 78 IKTVKIHILDSATEP----LDSYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLI----KY----NQMNFHQAF 145 (205)
Q Consensus 78 ~~~~~ipi~D~~~~~----~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm----~~----~~~~~~~A~ 145 (205)
.+|+.+.+.|+..+. .+.+++++-.- .+.+...++|.|||.+|+||+|++++.=++ +. +.++....+
T Consensus 415 ~~yh~~tWPDHGvP~dPg~vLnFLe~V~~r-q~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktI 493 (600)
T KOG0790|consen 415 WHYHYLTWPDHGVPSDPGGVLNFLEEVNHR-QESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTI 493 (600)
T ss_pred hhhheeecccCCCcCCccHHHHHHHHhhhh-hccccccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHH
Confidence 467777777877663 33333333322 223334679999999999999998755443 23 346789999
Q ss_pred HHHHhhCCCccCCHHHHHHH
Q psy14072 146 HYLRSLRPCIRPNLGFFKQL 165 (205)
Q Consensus 146 ~~vr~~rp~i~pn~~f~~~L 165 (205)
++||+.|....-.+.+.+++
T Consensus 494 qmVRsqRSGmVQTEaQYkFi 513 (600)
T KOG0790|consen 494 QMVRSQRSGMVQTEAQYKFI 513 (600)
T ss_pred HHHHHHhcchhhhHHhHHHH
Confidence 99999999887888766655
No 42
>KOG0791|consensus
Probab=97.95 E-value=5.5e-05 Score=64.49 Aligned_cols=91 Identities=19% Similarity=0.159 Sum_probs=62.5
Q ss_pred EEEEeecCCCCCChHHHHHHHHHHHHHHhcC-CCeEEEEcCCCCChHHHHHHHHHHHhC-----CCCHHHHHHHHHhhCC
Q psy14072 80 TVKIHILDSATEPLDSYFDQVADLVQKIKDE-GGCTLIHCVAGVSRSASLCLAYLIKYN-----QMNFHQAFHYLRSLRP 153 (205)
Q Consensus 80 ~~~ipi~D~~~~~~~~~~~~~~~fi~~~~~~-~~~VlVHC~~G~~RS~~v~~ayLm~~~-----~~~~~~A~~~vr~~rp 153 (205)
++...+.|...+.....+.++..-....+.. .++++|||.+|+|||||+++.--+..+ -.+.-..+..+|..|+
T Consensus 255 f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R~ 334 (374)
T KOG0791|consen 255 FHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSARM 334 (374)
T ss_pred EEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhccc
Confidence 3444566666664333344444444444433 689999999999999999987665442 2345566777888999
Q ss_pred CccCCHHHHHHHHHHHH
Q psy14072 154 CIRPNLGFFKQLINYEK 170 (205)
Q Consensus 154 ~i~pn~~f~~~L~~~e~ 170 (205)
.+.+++.++.+|..=-.
T Consensus 335 ~mVqte~Qyvfl~~c~~ 351 (374)
T KOG0791|consen 335 LMVQTEDQYVFLHQCVL 351 (374)
T ss_pred cccchHHHHHHHHHHHH
Confidence 99999999999875443
No 43
>KOG0789|consensus
Probab=97.86 E-value=7.3e-05 Score=65.57 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=43.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHH-HHh--C---CCCHHHHHHHHHhhCCCccCCHHHHHHHHH
Q psy14072 110 EGGCTLIHCVAGVSRSASLCLAYL-IKY--N---QMNFHQAFHYLRSLRPCIRPNLGFFKQLIN 167 (205)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~v~~ayL-m~~--~---~~~~~~A~~~vr~~rp~i~pn~~f~~~L~~ 167 (205)
..+++.|||.+|+||||++++.-. +.. . .....+.+..+|..|+.+..+..+...+..
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy~f~~~ 361 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQYLFIYA 361 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 468999999999999999996552 222 2 234788888899999887777776655543
No 44
>KOG0793|consensus
Probab=97.51 E-value=0.00026 Score=64.86 Aligned_cols=88 Identities=16% Similarity=0.212 Sum_probs=56.7
Q ss_pred eEEEEeecCCCCCChHHHHHHHHHHHHHHhc-CCCeEEEEcCCCCChHHHHHHHHHHHh------CCCCHHHHHHHHHhh
Q psy14072 79 KTVKIHILDSATEPLDSYFDQVADLVQKIKD-EGGCTLIHCVAGVSRSASLCLAYLIKY------NQMNFHQAFHYLRSL 151 (205)
Q Consensus 79 ~~~~ipi~D~~~~~~~~~~~~~~~fi~~~~~-~~~~VlVHC~~G~~RS~~v~~ayLm~~------~~~~~~~A~~~vr~~ 151 (205)
+++.+.|.+...+.....+-++-+-+.++.+ +..+|+|||..|.||||+-++.=++.. +..+....++++|.+
T Consensus 894 QFHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQ 973 (1004)
T KOG0793|consen 894 QFHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQ 973 (1004)
T ss_pred eeeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhc
Confidence 3455566666666544444444444444443 367999999999999998765544332 345677789999999
Q ss_pred CCCccCCHH-HHHHHH
Q psy14072 152 RPCIRPNLG-FFKQLI 166 (205)
Q Consensus 152 rp~i~pn~~-f~~~L~ 166 (205)
||.+.-... |...|.
T Consensus 974 R~GmVaTkdQFef~l~ 989 (1004)
T KOG0793|consen 974 RPGMVATKDQFEFALT 989 (1004)
T ss_pred CCcceeehhhhHHHHH
Confidence 997665554 444443
No 45
>KOG4228|consensus
Probab=96.99 E-value=0.0013 Score=63.23 Aligned_cols=92 Identities=15% Similarity=0.195 Sum_probs=54.9
Q ss_pred eecCCCCCChHHHHHHHHHHHHHHhcC----CCeEEEEcCCCCChHHHHHHHHHH-----HhCCCCHHHHHHHHHhhCCC
Q psy14072 84 HILDSATEPLDSYFDQVADLVQKIKDE----GGCTLIHCVAGVSRSASLCLAYLI-----KYNQMNFHQAFHYLRSLRPC 154 (205)
Q Consensus 84 pi~D~~~~~~~~~~~~~~~fi~~~~~~----~~~VlVHC~~G~~RS~~v~~ayLm-----~~~~~~~~~A~~~vr~~rp~ 154 (205)
.+.|+..+. +-..++.|+++...- .++++|||.+|+||||+.++.=-| .....+.-.-+..+|++|+.
T Consensus 702 ~Wpd~gvPe---~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~ 778 (1087)
T KOG4228|consen 702 AWPDHGVPE---TPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNN 778 (1087)
T ss_pred cCCCCCCcc---cchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhcccc
Confidence 455555443 225567777776543 499999999999999997743322 23444555556667777776
Q ss_pred ccCCHHHHHHHH--HHHHHHhCCCce
Q psy14072 155 IRPNLGFFKQLI--NYEKRFYAESSV 178 (205)
Q Consensus 155 i~pn~~f~~~L~--~~e~~l~~~~~~ 178 (205)
..-...+.-+.. ..|..+.|...+
T Consensus 779 mVQt~eQYiFi~~AllE~~~~G~T~i 804 (1087)
T KOG4228|consen 779 MVQTEEQYIFIHEALLEACLCGDTEV 804 (1087)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCccc
Confidence 555555444432 223344444444
No 46
>KOG4228|consensus
Probab=96.47 E-value=0.0068 Score=58.43 Aligned_cols=87 Identities=18% Similarity=0.279 Sum_probs=54.9
Q ss_pred eEEEEeecCCCCCC--hHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHh-----CCCCHHHHHHHHHhh
Q psy14072 79 KTVKIHILDSATEP--LDSYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLIKY-----NQMNFHQAFHYLRSL 151 (205)
Q Consensus 79 ~~~~ipi~D~~~~~--~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~vr~~ 151 (205)
+|..+|..+..... ....+.....-.++. ...+++.|||..|.+||++++++-++.. .-++.-++...+|..
T Consensus 985 q~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~-~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~ 1063 (1087)
T KOG4228|consen 985 QFTGWPEYGKPPQSKGPISKIPSVASKWQQL-GADGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQ 1063 (1087)
T ss_pred EecCCcccCcCCCCcchhhhHHHHHHHHHhh-cCCCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhc
Confidence 34444544433222 233344444444433 2379999999999999999887766533 335677788888888
Q ss_pred CCCccCCHHHHHHHH
Q psy14072 152 RPCIRPNLGFFKQLI 166 (205)
Q Consensus 152 rp~i~pn~~f~~~L~ 166 (205)
||.+.-...+..++.
T Consensus 1064 rp~mv~t~~QY~fcY 1078 (1087)
T KOG4228|consen 1064 RPGMVDTSDQYQFCY 1078 (1087)
T ss_pred CccccCcHHHHHHHH
Confidence 887766666666554
No 47
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=96.42 E-value=0.011 Score=44.54 Aligned_cols=66 Identities=21% Similarity=0.212 Sum_probs=40.3
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcC---CCeEEEEcCCCCC--h--HHHHHHHHHHHhCCCCHHHHHHHHHhhCC
Q psy14072 87 DSATEPLDSYFDQVADLVQKIKDE---GGCTLIHCVAGVS--R--SASLCLAYLIKYNQMNFHQAFHYLRSLRP 153 (205)
Q Consensus 87 D~~~~~~~~~~~~~~~fi~~~~~~---~~~VlVHC~~G~~--R--S~~v~~ayLm~~~~~~~~~A~~~vr~~rp 153 (205)
|.+.-+ ..++-+.+..+++.++. .++.+|||++.-. | ++.++.+|+|...|||.++|+..+...-|
T Consensus 40 DFGPln-L~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p 112 (141)
T PF14671_consen 40 DFGPLN-LAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQP 112 (141)
T ss_dssp -------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT-
T ss_pred cCCCcc-HHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 433334 44555556666666554 6778888876554 3 48899999999999999999999988753
No 48
>KOG4471|consensus
Probab=95.80 E-value=0.02 Score=51.98 Aligned_cols=36 Identities=25% Similarity=0.469 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHH
Q psy14072 97 FDQVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAY 132 (205)
Q Consensus 97 ~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ay 132 (205)
+.-++...+..-..+.+|||||..|.+||+-+++..
T Consensus 360 Laga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA 395 (717)
T KOG4471|consen 360 LAGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLA 395 (717)
T ss_pred HHHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHH
Confidence 344555566666678999999999999998877543
No 49
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=93.24 E-value=0.25 Score=42.82 Aligned_cols=22 Identities=41% Similarity=0.798 Sum_probs=17.1
Q ss_pred cCCCeEEEEcCCCCChHHHHHH
Q psy14072 109 DEGGCTLIHCVAGVSRSASLCL 130 (205)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~~ 130 (205)
..|..|||||..|.+||+-++.
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~s 250 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSS 250 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHH
Confidence 6799999999999999966554
No 50
>KOG1089|consensus
Probab=91.66 E-value=0.37 Score=44.02 Aligned_cols=28 Identities=29% Similarity=0.568 Sum_probs=21.4
Q ss_pred HHHHHHhc-CCCeEEEEcCCCCChHHHHH
Q psy14072 102 DLVQKIKD-EGGCTLIHCVAGVSRSASLC 129 (205)
Q Consensus 102 ~fi~~~~~-~~~~VlVHC~~G~~RS~~v~ 129 (205)
.+|-+++. +|.+|||||..|.+|+..++
T Consensus 334 ~~ia~~l~~~~~sVlvhcsdGwDrT~qV~ 362 (573)
T KOG1089|consen 334 AEIAKCLSSEGASVLVHCSDGWDRTCQVS 362 (573)
T ss_pred HHHHHHHHhCCCeEEEEccCCcchhHHHH
Confidence 34444555 56999999999999996665
No 51
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=88.01 E-value=1.1 Score=31.19 Aligned_cols=68 Identities=12% Similarity=0.149 Sum_probs=39.2
Q ss_pred CCcceEEEcCCCCCCCCCCCCce-EEEEeecCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHH
Q psy14072 57 HPVTCIVNAAPELPDPPLADTIK-TVKIHILDSATEPLDSYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLIK 135 (205)
Q Consensus 57 ~gI~~VInl~~~~~~~~~~~~~~-~~~ipi~D~~~~~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~ 135 (205)
.+-..+|+++...+.. ..+-.. ..++|+.+..... .... ...+++++|+|.+|. || ..++.+|.
T Consensus 18 ~~~~~liDvR~~~e~~-~~~i~~~~~~ip~~~~~~~~-----~~~~------~~~~~~ivv~C~~G~-rS-~~aa~~L~- 82 (110)
T COG0607 18 GEDAVLLDVREPEEYE-RGHIPGAAINIPLSELKAAE-----NLLE------LPDDDPIVVYCASGV-RS-AAAAAALK- 82 (110)
T ss_pred cCCCEEEeccChhHhh-hcCCCcceeeeecccchhhh-----cccc------cCCCCeEEEEeCCCC-Ch-HHHHHHHH-
Confidence 3446788888773322 111223 6677777654321 0000 567899999999995 66 44555554
Q ss_pred hCCC
Q psy14072 136 YNQM 139 (205)
Q Consensus 136 ~~~~ 139 (205)
..|.
T Consensus 83 ~~G~ 86 (110)
T COG0607 83 LAGF 86 (110)
T ss_pred HcCC
Confidence 4443
No 52
>PLN02160 thiosulfate sulfurtransferase
Probab=86.21 E-value=1.8 Score=32.15 Aligned_cols=74 Identities=12% Similarity=0.136 Sum_probs=36.9
Q ss_pred eEEEcCCCCCCC--CCCCCceEEEEeecCCCCC-ChHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhC
Q psy14072 61 CIVNAAPELPDP--PLADTIKTVKIHILDSATE-PLDSYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLIKYN 137 (205)
Q Consensus 61 ~VInl~~~~~~~--~~~~~~~~~~ipi~D~~~~-~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~ 137 (205)
.||+++...+.. ..+ +-..+.+|+.+.... .+.. .+....+...+..+.+|++||..| .||... + ..+...
T Consensus 31 ~lIDVR~~~E~~~ghIp-gA~~iniP~~~~~~~~~l~~--~~~~~~~~~~~~~~~~IivyC~sG-~RS~~A-a-~~L~~~ 104 (136)
T PLN02160 31 QYLDVRTQDEFRRGHCE-AAKIVNIPYMLNTPQGRVKN--QEFLEQVSSLLNPADDILVGCQSG-ARSLKA-T-TELVAA 104 (136)
T ss_pred EEEECCCHHHHhcCCCC-CcceecccchhcCcccccCC--HHHHHHHHhccCCCCcEEEECCCc-HHHHHH-H-HHHHHc
Confidence 689998765432 122 222345665432111 1110 111111222245688999999999 677544 3 333455
Q ss_pred CCC
Q psy14072 138 QMN 140 (205)
Q Consensus 138 ~~~ 140 (205)
|.+
T Consensus 105 G~~ 107 (136)
T PLN02160 105 GYK 107 (136)
T ss_pred CCC
Confidence 654
No 53
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=85.08 E-value=3.1 Score=29.17 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=18.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHHhCCC
Q psy14072 110 EGGCTLIHCVAGVSRSASLCLAYLIKYNQM 139 (205)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 139 (205)
.+.+|+|+|..|. || +.++. .++..|.
T Consensus 65 ~~~~ivv~C~~G~-rs-~~a~~-~L~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RS-IIGAQ-SLINAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hH-HHHHH-HHHHCCC
Confidence 4689999999996 77 33333 3345665
No 54
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=84.38 E-value=1.6 Score=30.15 Aligned_cols=29 Identities=31% Similarity=0.469 Sum_probs=19.9
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHHhCCCC
Q psy14072 109 DEGGCTLIHCVAGVSRSASLCLAYLIKYNQMN 140 (205)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 140 (205)
.++.+|+|+|..| .||.. ++.+| ...|.+
T Consensus 59 ~~~~~ivvyC~~G-~rs~~-a~~~L-~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEK-ASAYL-KERGFK 87 (101)
T ss_pred cCCCEEEEECCCc-hhHHH-HHHHH-HHhCCc
Confidence 5678999999988 67854 33344 455654
No 55
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=82.22 E-value=6 Score=30.26 Aligned_cols=30 Identities=17% Similarity=0.020 Sum_probs=21.7
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHHhCCCC
Q psy14072 109 DEGGCTLIHCVAGVSRSASLCLAYLIKYNQMN 140 (205)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 140 (205)
.++.+|+++|..|..||.. ++++++..|.+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 4689999999998777764 45555566654
No 56
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=81.71 E-value=4.2 Score=28.99 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=25.0
Q ss_pred HHHHHHHHH-HhcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCC
Q psy14072 98 DQVADLVQK-IKDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMN 140 (205)
Q Consensus 98 ~~~~~fi~~-~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 140 (205)
.++.+++.. .+..+.+|+|+|..| +++++.++.+| +..|++
T Consensus 65 ~~~~~~~~~~~~~~~~~vv~~c~~g-~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 65 EEFAELLGSLGISNDDTVVVYDDGG-GFFAARAWWTL-RYFGHE 106 (122)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCC-CccHHHHHHHH-HHcCCC
Confidence 344444433 245689999999998 55555555444 455654
No 57
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=80.12 E-value=12 Score=25.66 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=42.2
Q ss_pred ceEEEcCCCCCC--CCCCCCceEEEEeecCC---CCCChHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHH---HH
Q psy14072 60 TCIVNAAPELPD--PPLADTIKTVKIHILDS---ATEPLDSYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLC---LA 131 (205)
Q Consensus 60 ~~VInl~~~~~~--~~~~~~~~~~~ipi~D~---~~~~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~---~a 131 (205)
..||+++..... ...+ + -.++|.... ........+.............+..|+++|..|. |+...+ ++
T Consensus 14 ~~liD~R~~~~~~~~hI~-g--a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~~~~~~ 89 (113)
T PF00581_consen 14 VLLIDVRSPEEYERGHIP-G--AVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAAAARVA 89 (113)
T ss_dssp EEEEEESSHHHHHHSBET-T--EEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHHHHHHH
T ss_pred eEEEEeCCHHHHHcCCCC-C--Cccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhHHHHHH
Confidence 467787754321 1112 2 266777443 2223345555555555555677889999996665 443333 33
Q ss_pred HHHHhCCCC
Q psy14072 132 YLIKYNQMN 140 (205)
Q Consensus 132 yLm~~~~~~ 140 (205)
+.+...|++
T Consensus 90 ~~l~~~g~~ 98 (113)
T PF00581_consen 90 WILKKLGFK 98 (113)
T ss_dssp HHHHHTTTS
T ss_pred HHHHHcCCC
Confidence 445555654
No 58
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=79.23 E-value=6.8 Score=26.88 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=18.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHHhCCCC
Q psy14072 110 EGGCTLIHCVAGVSRSASLCLAYLIKYNQMN 140 (205)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 140 (205)
.+.+|+++|..| .||.. ++.+|. ..|.+
T Consensus 57 ~~~~vv~~c~~g-~rs~~-~~~~l~-~~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQ-VAQWLL-RQGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHHH-HHHHHH-HcCCc
Confidence 578999999998 57633 344443 45654
No 59
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=78.70 E-value=11 Score=26.57 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=14.1
Q ss_pred CCCeEEEEcCCCCChHHHH
Q psy14072 110 EGGCTLIHCVAGVSRSASL 128 (205)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~v 128 (205)
...+|++||..|-.||+..
T Consensus 65 ~~~~iv~~C~~~g~rs~~a 83 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRA 83 (113)
T ss_pred CCCEEEEECCCCCcccHHH
Confidence 4579999999866676543
No 60
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=78.64 E-value=6.1 Score=28.65 Aligned_cols=32 Identities=31% Similarity=0.396 Sum_probs=21.9
Q ss_pred HhcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCC
Q psy14072 107 IKDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMN 140 (205)
Q Consensus 107 ~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 140 (205)
.+.++.+|+|+|..|-.||..+ +++++..|..
T Consensus 82 ~i~~~~~vvvyC~~~G~rs~~a--~~~L~~~G~~ 113 (128)
T cd01520 82 RLERDPKLLIYCARGGMRSQSL--AWLLESLGID 113 (128)
T ss_pred ccCCCCeEEEEeCCCCccHHHH--HHHHHHcCCc
Confidence 3567899999998655676533 3666666753
No 61
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=77.50 E-value=3 Score=28.64 Aligned_cols=30 Identities=10% Similarity=0.086 Sum_probs=19.6
Q ss_pred hcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCC
Q psy14072 108 KDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMN 140 (205)
Q Consensus 108 ~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 140 (205)
+..+++|+|+|..|. ||. .++..| ...|.+
T Consensus 58 ~~~~~~ivv~C~~G~-rs~-~aa~~L-~~~G~~ 87 (100)
T cd01523 58 LPDDQEVTVICAKEG-SSQ-FVAELL-AERGYD 87 (100)
T ss_pred CCCCCeEEEEcCCCC-cHH-HHHHHH-HHcCce
Confidence 356789999999994 773 333433 455553
No 62
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=75.28 E-value=6.7 Score=28.00 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=19.5
Q ss_pred hcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCC
Q psy14072 108 KDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMN 140 (205)
Q Consensus 108 ~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 140 (205)
...+.+|+|+|..| .||... +.+| ...|.+
T Consensus 61 ~~~~~~ivv~C~~G-~rs~~a-a~~L-~~~G~~ 90 (117)
T cd01522 61 VGKDRPVLLLCRSG-NRSIAA-AEAA-AQAGFT 90 (117)
T ss_pred CCCCCeEEEEcCCC-ccHHHH-HHHH-HHCCCC
Confidence 35688999999998 577543 3333 455543
No 63
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=73.00 E-value=50 Score=29.42 Aligned_cols=183 Identities=20% Similarity=0.232 Sum_probs=103.3
Q ss_pred HHHhhhccCCccccccCCCCCCCCCCCCCCCCceeeeCCEEEcCc-ccccc----------ccCCcceEEEcCCCCCCCC
Q psy14072 5 EIFQENVKKPWQFFSSTKNHPQISSNSSQLFEVTEVCPGLLLCGA-TMVGR----------TNHPVTCIVNAAPELPDPP 73 (205)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~lylG~~-~a~~~----------~~~gI~~VInl~~~~~~~~ 73 (205)
+-+++.+.....+++.+++|+....-.--..--++| |.-+|.- ...+. .++|-.+|.+|.....-..
T Consensus 28 e~ir~~vA~G~iVIp~N~~h~~~~p~~IG~gl~tKV--NaNIGtS~~~~d~~~E~~K~~~A~~~GADtiMDLStggdl~~ 105 (431)
T PRK13352 28 EFIREGVAEGRIVIPANINHKNLKPVGIGKGLRTKV--NANIGTSSDISDIEEELEKAKVAVKYGADTIMDLSTGGDLDE 105 (431)
T ss_pred HHHHHHHhCceEEEecCCCCCCCCeeEEcCCceeEE--eeeecCCCCCCCHHHHHHHHHHHHHcCCCeEeeccCCCCHHH
Confidence 557778888888899999998643211111112333 3445666 44443 6789999999987652111
Q ss_pred C------CCCceEEEEeecCCCC------CCh-HHHHHHHHHHHHHHhcCC-CeEEEEcC----------------CCCC
Q psy14072 74 L------ADTIKTVKIHILDSAT------EPL-DSYFDQVADLVQKIKDEG-GCTLIHCV----------------AGVS 123 (205)
Q Consensus 74 ~------~~~~~~~~ipi~D~~~------~~~-~~~~~~~~~fi~~~~~~~-~~VlVHC~----------------~G~~ 123 (205)
. ...+-.=.+|+.+-.. .++ .-..+.+++.|++..++| --+-|||. .=+|
T Consensus 106 iR~~il~~s~vpvGTVPiYqa~~~~~~k~~~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVS 185 (431)
T PRK13352 106 IRRAIIEASPVPVGTVPIYQAAVEAARKYGSVVDMTEDDLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVS 185 (431)
T ss_pred HHHHHHHcCCCCCcChhHHHHHHHHHhcCCChhhCCHHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeec
Confidence 0 0011122233322100 000 001255666777776666 46889995 1258
Q ss_pred hHHHHHHHHHHHhCCCC-----HHHHHHHHHhh----------CCCccC---CHHHHHHHHHH---HHHHhCCCceEeee
Q psy14072 124 RSASLCLAYLIKYNQMN-----FHQAFHYLRSL----------RPCIRP---NLGFFKQLINY---EKRFYAESSVEIVY 182 (205)
Q Consensus 124 RS~~v~~ayLm~~~~~~-----~~~A~~~vr~~----------rp~i~p---n~~f~~~L~~~---e~~l~~~~~~~~~~ 182 (205)
|-|++.++|+++...-+ +++-++..++. ||.... ...++..|... -++-+.++..-+++
T Consensus 186 RGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~yDVtlSLGDglRPG~i~Da~D~aQi~El~~lgeL~~RA~e~gVQvMVE 265 (431)
T PRK13352 186 RGGSFLAAWMLHNNKENPLYEHFDYLLEILKEYDVTLSLGDGLRPGCIADATDRAQIQELITLGELVKRAREAGVQVMVE 265 (431)
T ss_pred CCHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 99999999999775543 56666666654 564322 23455555433 34445677777777
Q ss_pred cccccCCCCc
Q psy14072 183 NAAAQTYIPS 192 (205)
Q Consensus 183 ~~~~~~~~p~ 192 (205)
-+ |-+|-
T Consensus 266 GP---GHvPl 272 (431)
T PRK13352 266 GP---GHVPL 272 (431)
T ss_pred CC---CCCCH
Confidence 66 65553
No 64
>smart00400 ZnF_CHCC zinc finger.
Probab=72.13 E-value=4.5 Score=24.93 Aligned_cols=32 Identities=25% Similarity=0.711 Sum_probs=23.5
Q ss_pred EEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHH
Q psy14072 115 LIHCVAGVSRSASLCLAYLIKYNQMNFHQAFHYL 148 (205)
Q Consensus 115 lVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v 148 (205)
..||.+ -++.|- ++.++|+..|.++.+|++.+
T Consensus 23 ~~~Cf~-cg~gGd-~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGN-VISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCC-HHHHHHHHHCcCHHHHHHHh
Confidence 477874 345554 47777788899999999875
No 65
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=71.59 E-value=7.1 Score=24.19 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhh
Q psy14072 126 ASLCLAYLIKYNQMNFHQAFHYLRSL 151 (205)
Q Consensus 126 ~~v~~ayLm~~~~~~~~~A~~~vr~~ 151 (205)
..-+.+.||...|++.++|++.++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 45678899999999999999999876
No 66
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=70.80 E-value=12 Score=32.00 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=19.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHHhCCCC
Q psy14072 110 EGGCTLIHCVAGVSRSASLCLAYLIKYNQMN 140 (205)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 140 (205)
++++|+|+|..| .|| ..+++||. ..|.+
T Consensus 170 kdk~IvvyC~~G-~Rs-~~aa~~L~-~~Gf~ 197 (314)
T PRK00142 170 KDKKVVMYCTGG-IRC-EKASAWMK-HEGFK 197 (314)
T ss_pred CcCeEEEECCCC-cHH-HHHHHHHH-HcCCC
Confidence 578999999998 577 44555664 45554
No 67
>PRK01415 hypothetical protein; Validated
Probab=70.74 E-value=16 Score=30.16 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=20.9
Q ss_pred hcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCC
Q psy14072 108 KDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMN 140 (205)
Q Consensus 108 ~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 140 (205)
..++++|+++|++| .|| ..++++|. ..|.+
T Consensus 168 ~~k~k~Iv~yCtgG-iRs-~kAa~~L~-~~Gf~ 197 (247)
T PRK01415 168 LLKGKKIAMVCTGG-IRC-EKSTSLLK-SIGYD 197 (247)
T ss_pred hcCCCeEEEECCCC-hHH-HHHHHHHH-HcCCC
Confidence 35689999999999 476 45556654 45554
No 68
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=70.66 E-value=9.2 Score=32.21 Aligned_cols=35 Identities=26% Similarity=0.576 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhc----CCC---eEEEEcCCCCChHHHHH
Q psy14072 95 SYFDQVADLVQKIKD----EGG---CTLIHCVAGVSRSASLC 129 (205)
Q Consensus 95 ~~~~~~~~fi~~~~~----~~~---~VlVHC~~G~~RS~~v~ 129 (205)
..++.+.++++..+. +|+ .|-|=|+.|..||++++
T Consensus 219 ~f~~~~~~~l~~~lp~y~~egk~~ltIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 219 EFLEKIEDLLDFLLPRYEKEGKSYLTIAIGCTGGQHRSVAIA 260 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEEEEEcCCCcCcHHHHH
Confidence 344444444444432 233 78999999999998877
No 69
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=70.30 E-value=7.6 Score=26.33 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=18.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHHhCCCC
Q psy14072 110 EGGCTLIHCVAGVSRSASLCLAYLIKYNQMN 140 (205)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 140 (205)
.+.+|+++|..|. ||. .++.+| +..|.+
T Consensus 55 ~~~~iv~~c~~G~-rs~-~aa~~L-~~~G~~ 82 (95)
T cd01534 55 RGARIVLADDDGV-RAD-MTASWL-AQMGWE 82 (95)
T ss_pred CCCeEEEECCCCC-hHH-HHHHHH-HHcCCE
Confidence 4689999999984 664 334444 556653
No 70
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=68.92 E-value=5.9 Score=29.87 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCCeEEEEcCC
Q psy14072 98 DQVADLVQKIKDEGGCTLIHCVA 120 (205)
Q Consensus 98 ~~~~~fi~~~~~~~~~VlVHC~~ 120 (205)
+-++.+++++.+.|.+|+|+|..
T Consensus 16 ~~~c~L~~k~~~~G~rvlI~~~d 38 (144)
T COG2927 16 AAACRLAEKAWRSGWRVLIQCED 38 (144)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCC
Confidence 48899999999999999999954
No 71
>PRK05320 rhodanese superfamily protein; Provisional
Probab=67.80 E-value=14 Score=30.51 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=19.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHHhCCCC
Q psy14072 110 EGGCTLIHCVAGVSRSASLCLAYLIKYNQMN 140 (205)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 140 (205)
++++|+++|..| .|| ..++.+|. ..|.+
T Consensus 174 kdk~IvvyC~~G-~Rs-~~Aa~~L~-~~Gf~ 201 (257)
T PRK05320 174 AGKTVVSFCTGG-IRC-EKAAIHMQ-EVGID 201 (257)
T ss_pred CCCeEEEECCCC-HHH-HHHHHHHH-HcCCc
Confidence 578999999999 466 45566664 45543
No 72
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=66.45 E-value=19 Score=28.48 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHH
Q psy14072 94 DSYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLIK 135 (205)
Q Consensus 94 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~ 135 (205)
.+.+.++.+.+.+++.++++|++. |.|+|++++..+-++
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a~~ 62 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFAAS 62 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHHHH
Confidence 466788889898888999999998 888998877555543
No 73
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=65.83 E-value=20 Score=23.99 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=18.6
Q ss_pred hcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCC
Q psy14072 108 KDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMN 140 (205)
Q Consensus 108 ~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 140 (205)
+..+.+|+|+|..|. || ..+ +..++..|.+
T Consensus 53 ~~~~~~ivv~c~~g~-~s-~~a-~~~l~~~G~~ 82 (96)
T cd01444 53 LDRDRPVVVYCYHGN-SS-AQL-AQALREAGFT 82 (96)
T ss_pred cCCCCCEEEEeCCCC-hH-HHH-HHHHHHcCCc
Confidence 467899999999763 44 333 3344455543
No 74
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=65.12 E-value=8.8 Score=26.11 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=19.1
Q ss_pred hcCCCeEEEEcCCCCChHHHHHHHHHHHhCCC
Q psy14072 108 KDEGGCTLIHCVAGVSRSASLCLAYLIKYNQM 139 (205)
Q Consensus 108 ~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 139 (205)
+..+.+|+|+|..| .||. .+ +.++...|.
T Consensus 58 ~~~~~~ivv~c~~g-~~s~-~~-~~~l~~~G~ 86 (103)
T cd01447 58 FAEDKPFVFYCASG-WRSA-LA-GKTLQDMGL 86 (103)
T ss_pred CCCCCeEEEEcCCC-CcHH-HH-HHHHHHcCh
Confidence 45789999999987 5663 33 344445553
No 75
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=64.73 E-value=9.8 Score=25.78 Aligned_cols=30 Identities=7% Similarity=-0.088 Sum_probs=19.7
Q ss_pred hcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCC
Q psy14072 108 KDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMN 140 (205)
Q Consensus 108 ~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 140 (205)
...+.+|+|+|..| .||+. ++.+| +..|.+
T Consensus 53 ~~~~~~ivv~c~~g-~~s~~-~~~~l-~~~G~~ 82 (96)
T cd01529 53 PGRATRYVLTCDGS-LLARF-AAQEL-LALGGK 82 (96)
T ss_pred CCCCCCEEEEeCCh-HHHHH-HHHHH-HHcCCC
Confidence 35688999999877 57744 34444 556653
No 76
>PRK13938 phosphoheptose isomerase; Provisional
Probab=63.82 E-value=25 Score=27.80 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHh
Q psy14072 92 PLDSYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLIKY 136 (205)
Q Consensus 92 ~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~ 136 (205)
.+.+.+.++.+.+.+.+.+|++|++. |.|+|+.++..+-.+.
T Consensus 26 ~~~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa~~L 67 (196)
T PRK13938 26 VLLEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFAAEL 67 (196)
T ss_pred hhHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHHHHc
Confidence 45677788888888889999999998 8888887776666554
No 77
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=63.19 E-value=12 Score=27.93 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q psy14072 94 DSYFDQVADLVQKIKDEGGCTLIHCVAG 121 (205)
Q Consensus 94 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G 121 (205)
.....-++.+++++.++|.+|+|+|...
T Consensus 12 ~~~~~~~c~L~~ka~~~g~rv~I~~~d~ 39 (142)
T PRK05728 12 SALEALLCELAEKALRAGWRVLVQCEDE 39 (142)
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3456779999999999999999999664
No 78
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=62.91 E-value=14 Score=24.92 Aligned_cols=29 Identities=10% Similarity=-0.103 Sum_probs=18.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHHhCCC
Q psy14072 110 EGGCTLIHCVAGVSRSASLCLAYLIKYNQM 139 (205)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 139 (205)
...+|+|+|..|...++..++..| +..|.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L-~~~G~ 77 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRL-SELGY 77 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHH-HHcCc
Confidence 478999999998544344444444 44554
No 79
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=62.76 E-value=27 Score=24.34 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=17.6
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHHhCCC
Q psy14072 109 DEGGCTLIHCVAGVSRSASLCLAYLIKYNQM 139 (205)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 139 (205)
..+.+|+|+|..|. ||... +..| +..|.
T Consensus 56 ~~~~~vvlyC~~G~-rS~~a-a~~L-~~~G~ 83 (101)
T TIGR02981 56 DKNDTVKLYCNAGR-QSGMA-KDIL-LDMGY 83 (101)
T ss_pred CCCCeEEEEeCCCH-HHHHH-HHHH-HHcCC
Confidence 35678999999994 66443 3333 34554
No 80
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=62.32 E-value=10 Score=31.49 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=22.0
Q ss_pred CCCCChHHHHHHHHHHHhCCCCHHHHHHH
Q psy14072 119 VAGVSRSASLCLAYLIKYNQMNFHQAFHY 147 (205)
Q Consensus 119 ~~G~~RS~~v~~ayLm~~~~~~~~~A~~~ 147 (205)
-=|+||||+.+.+-++ .|++.++|.++
T Consensus 159 ~PGiSRSG~Ti~~~l~--~G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAGLL--LGLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHHHH--CCCCHHHHHHH
Confidence 3599999998888775 68888888775
No 81
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=61.91 E-value=15 Score=31.04 Aligned_cols=37 Identities=27% Similarity=0.522 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhc----CCC---eEEEEcCCCCChHHHHHH
Q psy14072 94 DSYFDQVADLVQKIKD----EGG---CTLIHCVAGVSRSASLCL 130 (205)
Q Consensus 94 ~~~~~~~~~fi~~~~~----~~~---~VlVHC~~G~~RS~~v~~ 130 (205)
...++.+.++++.++. +|+ .|-|=|+.|..||++++=
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 221 EEFLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIAE 264 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHHH
Confidence 3455555666655442 243 588999999999988863
No 82
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=61.72 E-value=8.7 Score=26.73 Aligned_cols=36 Identities=17% Similarity=0.491 Sum_probs=24.7
Q ss_pred EEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHhhC
Q psy14072 115 LIHCVAGVSRSASLCLAYLIKYNQMNFHQAFHYLRSLR 152 (205)
Q Consensus 115 lVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~vr~~r 152 (205)
..||.+ -+.+|- ++.++|...++++.+|++.+.+..
T Consensus 54 ~~~Cf~-Cg~~Gd-~i~~v~~~~~~~f~eAv~~l~~~~ 89 (97)
T PF01807_consen 54 RFKCFG-CGKGGD-VIDFVMKYEGCSFKEAVKWLAEEF 89 (97)
T ss_dssp EEEETT-T--EE--HHHHHHHHHT--HHHHHHHHHHHH
T ss_pred eEEECC-CCCCCc-HHhHHHHHhCCCHHHHHHHHHHHh
Confidence 688984 566664 466778899999999999998764
No 83
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=61.25 E-value=14 Score=25.27 Aligned_cols=27 Identities=15% Similarity=0.086 Sum_probs=17.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHHhCCCC
Q psy14072 111 GGCTLIHCVAGVSRSASLCLAYLIKYNQMN 140 (205)
Q Consensus 111 ~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 140 (205)
+.+|+|+|..|. ||..+ +..+...|.+
T Consensus 65 ~~~vv~~c~~g~-~s~~~--a~~L~~~G~~ 91 (105)
T cd01525 65 GKIIVIVSHSHK-HAALF--AAFLVKCGVP 91 (105)
T ss_pred CCeEEEEeCCCc-cHHHH--HHHHHHcCCC
Confidence 689999999986 66443 2234455553
No 84
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=61.13 E-value=10 Score=25.55 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=12.0
Q ss_pred CeEEEEcCCCCChH
Q psy14072 112 GCTLIHCVAGVSRS 125 (205)
Q Consensus 112 ~~VlVHC~~G~~RS 125 (205)
++|++.|.+|.|-|
T Consensus 1 ~kilvvCg~G~gtS 14 (87)
T cd05567 1 KKIVFACDAGMGSS 14 (87)
T ss_pred CEEEEECCCCccHH
Confidence 47999999999865
No 85
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=60.70 E-value=13 Score=26.56 Aligned_cols=28 Identities=18% Similarity=0.263 Sum_probs=18.8
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHHhCCC
Q psy14072 109 DEGGCTLIHCVAGVSRSASLCLAYLIKYNQM 139 (205)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 139 (205)
..+++|+|+|..|. ||.. ++. .+...|.
T Consensus 70 ~~~~~ivv~C~~G~-rs~~-aa~-~L~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQT-AVR-KLKELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHHH-HHH-HHHHcCC
Confidence 56889999999994 7743 333 3445565
No 86
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=60.55 E-value=9.7 Score=31.95 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=21.2
Q ss_pred CCCChHHHHHHHHHHHhCCCCHHHHHHH
Q psy14072 120 AGVSRSASLCLAYLIKYNQMNFHQAFHY 147 (205)
Q Consensus 120 ~G~~RS~~v~~ayLm~~~~~~~~~A~~~ 147 (205)
=|+||||+-+.+-++ .|++.++|.++
T Consensus 166 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 191 (276)
T PRK12554 166 PGVSRSGATIIAGLL--LGLTREAAARF 191 (276)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 599999988888776 58888888764
No 87
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=60.06 E-value=10 Score=31.44 Aligned_cols=26 Identities=35% Similarity=0.318 Sum_probs=21.1
Q ss_pred CCCChHHHHHHHHHHHhCCCCHHHHHHH
Q psy14072 120 AGVSRSASLCLAYLIKYNQMNFHQAFHY 147 (205)
Q Consensus 120 ~G~~RS~~v~~ayLm~~~~~~~~~A~~~ 147 (205)
=|+||||+.+.+-+. .|++-++|.++
T Consensus 160 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 185 (255)
T TIGR00753 160 PGVSRSGSTISGGLF--IGLNRKAAAEF 185 (255)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 599999988888775 68888888764
No 88
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=60.01 E-value=23 Score=24.93 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=17.2
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHHhCCC
Q psy14072 109 DEGGCTLIHCVAGVSRSASLCLAYLIKYNQM 139 (205)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 139 (205)
..+.+|+++|..| .||... +..|. ..|.
T Consensus 58 ~~~~~IVlyC~~G-~rS~~a-a~~L~-~~G~ 85 (104)
T PRK10287 58 DKNDTVKLYCNAG-RQSGQA-KEILS-EMGY 85 (104)
T ss_pred CCCCeEEEEeCCC-hHHHHH-HHHHH-HcCC
Confidence 3467899999988 455443 33333 4444
No 89
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=59.61 E-value=18 Score=28.12 Aligned_cols=34 Identities=24% Similarity=0.176 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHH
Q psy14072 93 LDSYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLC 129 (205)
Q Consensus 93 ~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~ 129 (205)
+.+.+.++.+.|-+++.+|++||++ |.|+|++=+
T Consensus 23 l~~~I~~aa~~i~~~l~~G~Kvl~c---GNGgSaadA 56 (176)
T COG0279 23 LIEAIERAAQLLVQSLLNGNKVLAC---GNGGSAADA 56 (176)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---CCCcchhhH
Confidence 3556778888888889999999987 677775543
No 90
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=59.01 E-value=16 Score=27.85 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q psy14072 94 DSYFDQVADLVQKIKDEGGCTLIHCVAG 121 (205)
Q Consensus 94 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G 121 (205)
...+.-++.+++++..+|.+|+|+|...
T Consensus 12 ~~~~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 12 ELLLKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred ChHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 4566889999999999999999999765
No 91
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=58.98 E-value=40 Score=26.45 Aligned_cols=34 Identities=21% Similarity=0.097 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHH
Q psy14072 93 LDSYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLC 129 (205)
Q Consensus 93 ~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~ 129 (205)
..+.+.++++.|.+++.+|++|++. |.|.|+.++
T Consensus 26 ~~~~i~~a~~~i~~al~~~~rI~i~---G~G~S~~~A 59 (192)
T PRK00414 26 NIHAIQRAAVLIADSFKAGGKVLSC---GNGGSHCDA 59 (192)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 3577899999999999999999887 666675544
No 92
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=58.37 E-value=12 Score=31.32 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=21.3
Q ss_pred CCCChHHHHHHHHHHHhCCCCHHHHHHH
Q psy14072 120 AGVSRSASLCLAYLIKYNQMNFHQAFHY 147 (205)
Q Consensus 120 ~G~~RS~~v~~ayLm~~~~~~~~~A~~~ 147 (205)
=|+||||+-+.+-+. .|++.++|.++
T Consensus 164 PGiSRSG~TI~~~l~--~G~~r~~Aa~f 189 (268)
T PRK00281 164 PGTSRSGATISGGLL--LGLSREAAAEF 189 (268)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 599999988888775 68888888764
No 93
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=56.70 E-value=19 Score=24.66 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=19.3
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHHhCCCC
Q psy14072 109 DEGGCTLIHCVAGVSRSASLCLAYLIKYNQMN 140 (205)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 140 (205)
.++.+|+|+|..|. ||.. ++.++...|..
T Consensus 64 ~~~~~ivv~c~~g~-~s~~--~~~~l~~~G~~ 92 (106)
T cd01519 64 SKDKELIFYCKAGV-RSKA--AAELARSLGYE 92 (106)
T ss_pred CCCCeEEEECCCcH-HHHH--HHHHHHHcCCc
Confidence 35789999999985 6533 34445566653
No 94
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=56.68 E-value=25 Score=30.47 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=14.5
Q ss_pred hcCCCeEEEEcCCCCChH
Q psy14072 108 KDEGGCTLIHCVAGVSRS 125 (205)
Q Consensus 108 ~~~~~~VlVHC~~G~~RS 125 (205)
+..|..||.||.+|..++
T Consensus 145 I~~g~~ILThc~sg~lat 162 (339)
T PRK06036 145 LEDGDTVLTHCNAGRLAC 162 (339)
T ss_pred ccCCCEEEEecCCccccc
Confidence 356889999999997654
No 95
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=56.52 E-value=14 Score=27.35 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCCC
Q psy14072 97 FDQVADLVQKIKDEGGCTLIHCVAG 121 (205)
Q Consensus 97 ~~~~~~fi~~~~~~~~~VlVHC~~G 121 (205)
..-++..++++.++|.+|+|+|..-
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~ 39 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDE 39 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSH
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 5778899999999999999999653
No 96
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=55.45 E-value=21 Score=31.20 Aligned_cols=14 Identities=36% Similarity=0.760 Sum_probs=11.6
Q ss_pred hcCCCeEEEEcCCC
Q psy14072 108 KDEGGCTLIHCVAG 121 (205)
Q Consensus 108 ~~~~~~VlVHC~~G 121 (205)
+..|..||.||.+|
T Consensus 164 I~dg~~ILThcnsg 177 (363)
T PRK05772 164 LNDGDTVLTQCNAG 177 (363)
T ss_pred cCCCCEEEEecCCc
Confidence 35688999999887
No 97
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=55.31 E-value=12 Score=25.90 Aligned_cols=61 Identities=18% Similarity=0.075 Sum_probs=34.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHH---HhCCCC-------HHHHHHHHHhhCCCccCCHHHHHHHHHHHHHHhC
Q psy14072 111 GGCTLIHCVAGVSRSASLCLAYLI---KYNQMN-------FHQAFHYLRSLRPCIRPNLGFFKQLINYEKRFYA 174 (205)
Q Consensus 111 ~~~VlVHC~~G~~RS~~v~~ayLm---~~~~~~-------~~~A~~~vr~~rp~i~pn~~f~~~L~~~e~~l~~ 174 (205)
..+||+-|.+|.+-| .++ --+- ..+|++ ..++-.... ..-.+...+.+...+.++++...+
T Consensus 3 ~~~ILl~C~~G~sSS-~l~-~k~~~~~~~~gi~~~v~a~~~~~~~~~~~-~~Dvill~pqi~~~~~~i~~~~~~ 73 (95)
T TIGR00853 3 ETNILLLCAAGMSTS-LLV-NKMNKAAEEYGVPVKIAAGSYGAAGEKLD-DADVVLLAPQVAYMLPDLKKETDK 73 (95)
T ss_pred ccEEEEECCCchhHH-HHH-HHHHHHHHHCCCcEEEEEecHHHHHhhcC-CCCEEEECchHHHHHHHHHHHhhh
Confidence 478999999999833 333 3222 235553 333222222 223555666677777777766543
No 98
>PLN02444 HMP-P synthase
Probab=55.10 E-value=1.5e+02 Score=27.66 Aligned_cols=183 Identities=13% Similarity=0.176 Sum_probs=102.2
Q ss_pred HHHHhhhccCCccccccCCCCCCCCCCCCCCCCceeeeCCEEEcCc-ccccc----------ccCCcceEEEcCCCCCCC
Q psy14072 4 EEIFQENVKKPWQFFSSTKNHPQISSNSSQLFEVTEVCPGLLLCGA-TMVGR----------TNHPVTCIVNAAPELPDP 72 (205)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~lylG~~-~a~~~----------~~~gI~~VInl~~~~~~~ 72 (205)
.|-++..+.....+++.+.+|++...-.--..--.+| |.-||+- ...+. .+.|-++|.+|.....-.
T Consensus 187 pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~gl~tKV--NANIGtS~~~s~ie~EveK~~~A~~~GADTvMDLSTGgdi~ 264 (642)
T PLN02444 187 PEFVRSEVARGRAIIPSNKKHLELEPMIVGRNFLVKV--NANIGNSAVTSSIEEEVYKLQWATMWGADTVMDLSTGRHIH 264 (642)
T ss_pred HHHHHHHHhCceEEEecCCCCCCCCceEecCCceeEE--eeeecCCCCCCCHHHHHHHHHHHHHcCCCeEeeccCCCCHH
Confidence 3557788888899999999998754211111122334 3455666 44443 678999999998764211
Q ss_pred CCC------CCceEEEEeecCCCC---CCh-HHHHHHHHHHHHHHhcCC-CeEEEEcC-------------CC-CChHHH
Q psy14072 73 PLA------DTIKTVKIHILDSAT---EPL-DSYFDQVADLVQKIKDEG-GCTLIHCV-------------AG-VSRSAS 127 (205)
Q Consensus 73 ~~~------~~~~~~~ipi~D~~~---~~~-~~~~~~~~~fi~~~~~~~-~~VlVHC~-------------~G-~~RS~~ 127 (205)
... ..+-.=.+|+..-.. ... .-..+.+.+.|++..++| --+-|||. .| +||-|+
T Consensus 265 ~iR~~Il~~spvPVGTVPIYqA~~~~~~~~~~lt~d~~~d~ieeQaeqGVDfmTIH~Gv~~~~v~~~~~R~tgIVSRGGS 344 (642)
T PLN02444 265 ETREWILRNSPVPVGTVPIYQALEKVDGIAENLTWEVFRETLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGS 344 (642)
T ss_pred HHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEEEChhhHHHHHHHHhCcccCceeCCcH
Confidence 100 011111233321100 010 011355566666665555 35778886 22 578899
Q ss_pred HHHHHHHHhCCCC-----HHHHHHHHHhh----------CCCccC---CHHHHHHHHHH---HHHHhCCCceEeeecccc
Q psy14072 128 LCLAYLIKYNQMN-----FHQAFHYLRSL----------RPCIRP---NLGFFKQLINY---EKRFYAESSVEIVYNAAA 186 (205)
Q Consensus 128 v~~ayLm~~~~~~-----~~~A~~~vr~~----------rp~i~p---n~~f~~~L~~~---e~~l~~~~~~~~~~~~~~ 186 (205)
+.++|++....-+ +++-++.+++. ||...- ...++.+|..+ -++-...+..-+++-+
T Consensus 345 i~a~Wml~~~kENPlYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~tLGELtkrA~e~gVQVMIEGP-- 422 (642)
T PLN02444 345 IHAKWCLAYHKENFAYEHWDDILDICNQYDIALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWEKDVQVMNEGP-- 422 (642)
T ss_pred HHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECC--
Confidence 9999999875543 66667776665 453222 22355555433 2333456666677766
Q ss_pred cCCCC
Q psy14072 187 QTYIP 191 (205)
Q Consensus 187 ~~~~p 191 (205)
|-+|
T Consensus 423 -GHVP 426 (642)
T PLN02444 423 -GHVP 426 (642)
T ss_pred -CcCc
Confidence 6666
No 99
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=54.50 E-value=18 Score=30.19 Aligned_cols=35 Identities=26% Similarity=0.534 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHh----cCCC---eEEEEcCCCCChHHHHH
Q psy14072 95 SYFDQVADLVQKIK----DEGG---CTLIHCVAGVSRSASLC 129 (205)
Q Consensus 95 ~~~~~~~~fi~~~~----~~~~---~VlVHC~~G~~RS~~v~ 129 (205)
..+..+.++++.++ .+|+ .|.|=|+.|..||++++
T Consensus 220 ef~~~l~~~l~~~LP~y~~egks~lTIaIGCTGGqHRSV~ia 261 (286)
T COG1660 220 EFYEKLRDLLEFWLPRYEKEGKSYLTIAIGCTGGQHRSVYIA 261 (286)
T ss_pred HHHHHHHHHHHHHhHHHHhcCCeEEEEEEccCCCccchHHHH
Confidence 33444555555444 2344 58899999999998876
No 100
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=54.46 E-value=47 Score=24.38 Aligned_cols=62 Identities=16% Similarity=0.317 Sum_probs=38.3
Q ss_pred CceEEEEeecCCCCCC-hHHHHHHHHHHHHHHhcCCCe-EEEEcCCCCChHHHHHHHHHHHhCC
Q psy14072 77 TIKTVKIHILDSATEP-LDSYFDQVADLVQKIKDEGGC-TLIHCVAGVSRSASLCLAYLIKYNQ 138 (205)
Q Consensus 77 ~~~~~~ipi~D~~~~~-~~~~~~~~~~fi~~~~~~~~~-VlVHC~~G~~RS~~v~~ayLm~~~~ 138 (205)
.+....+|+.|...+. ....++.+...|.+...+++. .+.-|-+|-=++-++.++|.+..+|
T Consensus 53 ~i~~i~~~~~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~~iaGGRK~Ms~~~~~a~sl~g 116 (124)
T TIGR03642 53 EVHKIPLKFDDILSDEDILTFMSIAAKEVKKERENYGCERIIVNISGGRKIMTIILALYAQLLF 116 (124)
T ss_pred EEEEeccCccccCCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEecCCHHHHHHHHHHHHHHhC
Confidence 3444445666765553 345555666666666554543 4556678855677788888887766
No 101
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=53.50 E-value=8.5 Score=26.98 Aligned_cols=11 Identities=36% Similarity=0.679 Sum_probs=9.3
Q ss_pred CCeEEEEcCCC
Q psy14072 111 GGCTLIHCVAG 121 (205)
Q Consensus 111 ~~~VlVHC~~G 121 (205)
..+|||||.-|
T Consensus 85 ~~~~yIhCsIG 95 (97)
T PF10302_consen 85 APRIYIHCSIG 95 (97)
T ss_pred CCeEEEEEecc
Confidence 46999999877
No 102
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=52.12 E-value=19 Score=25.92 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=17.0
Q ss_pred hcCCCeEEEEcC-CCCChHHHHHHHHHH
Q psy14072 108 KDEGGCTLIHCV-AGVSRSASLCLAYLI 134 (205)
Q Consensus 108 ~~~~~~VlVHC~-~G~~RS~~v~~ayLm 134 (205)
+....+|+|||. +| .||+. ++.+|.
T Consensus 65 ~~~~~~vv~yC~~sg-~rs~~-aa~~L~ 90 (121)
T cd01530 65 KKKRRVLIFHCEFSS-KRGPR-MARHLR 90 (121)
T ss_pred cCCCCEEEEECCCcc-ccHHH-HHHHHH
Confidence 356899999997 66 57644 444554
No 103
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=51.36 E-value=1.1e+02 Score=27.00 Aligned_cols=184 Identities=18% Similarity=0.222 Sum_probs=100.3
Q ss_pred HHHHhhhccCCccccccCCCCCCCCCCCCCCCCceeeeCCEEEcCc-ccccc----------ccCCcceEEEcCCCCCCC
Q psy14072 4 EEIFQENVKKPWQFFSSTKNHPQISSNSSQLFEVTEVCPGLLLCGA-TMVGR----------TNHPVTCIVNAAPELPDP 72 (205)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~lylG~~-~a~~~----------~~~gI~~VInl~~~~~~~ 72 (205)
.|-.++.+.....+++.+.+||+...-.--..-.++| |.-+|.. ...+. .+.|.++|.+|.....-.
T Consensus 28 ~e~vr~~vA~Gr~iIp~N~~h~~~~p~~IG~~~~tKV--NaNiGtS~~~~~i~~EveK~~~A~~~GADtvMDLStGgdl~ 105 (432)
T COG0422 28 PEFVRREVAEGRAIIPANINHPELEPMIIGRGLRTKV--NANIGTSADTSDIDEEVEKAVWAIKWGADTVMDLSTGGDLH 105 (432)
T ss_pred HHHHHHHHhCCcEEeecCCCCCcccceeeccCceEEE--eeeecCCcccCCHHHHHHHHHHHHHhCcceeEecccCCCHH
Confidence 3556778888889999999999544222222223455 3455666 44443 678999999998764211
Q ss_pred CCC------CCceEEEEeecCCCCCC---h-HHHHHHHHHHHHHHhcCC-CeEEEEcC----------------CCCChH
Q psy14072 73 PLA------DTIKTVKIHILDSATEP---L-DSYFDQVADLVQKIKDEG-GCTLIHCV----------------AGVSRS 125 (205)
Q Consensus 73 ~~~------~~~~~~~ipi~D~~~~~---~-~~~~~~~~~fi~~~~~~~-~~VlVHC~----------------~G~~RS 125 (205)
... ..+-.=.+|+.+-...- . .-..+...+.+++..++| --+-|||. .=+||-
T Consensus 106 eiR~~ii~~s~vPvGTVPIYqA~~~~~~~~~~~t~d~~~~~v~~qa~~GVdfmTIHaGV~~~~~~~~~~~~R~~giVSRG 185 (432)
T COG0422 106 EIREWIIRNSPVPVGTVPIYQALEEVNGKVEDLTEDDFFDTVEKQAEQGVDFMTIHAGVLLEYVPRTKRSGRVTGIVSRG 185 (432)
T ss_pred HHHHHHHhcCCCCcCCchHHHHHHHHhcchhhCCHHHHHHHHHHHHHhCCcEEEeehhhhHHHHHHHHhcCceeeeeccc
Confidence 100 01111122222210000 0 001234455555555554 35667772 125899
Q ss_pred HHHHHHHHHHhCCCC-----HHHHHHHHHhh----------CCCccCCH---HHHHHHHHH---HHHHhCCCceEeeecc
Q psy14072 126 ASLCLAYLIKYNQMN-----FHQAFHYLRSL----------RPCIRPNL---GFFKQLINY---EKRFYAESSVEIVYNA 184 (205)
Q Consensus 126 ~~v~~ayLm~~~~~~-----~~~A~~~vr~~----------rp~i~pn~---~f~~~L~~~---e~~l~~~~~~~~~~~~ 184 (205)
|++.++|++....-+ +++-++..++. ||...... .++..|... -++-...+..-+++-+
T Consensus 186 Gsi~a~Wml~~~~ENply~~fd~lleI~k~yDvtlSLGDglRPG~i~DA~D~aQ~~EL~tlgeL~krA~~~gVQvmvEGP 265 (432)
T COG0422 186 GSIMAAWMLHNHKENPLYEHFDELLEIFKEYDVTLSLGDGLRPGCIADANDEAQFAELITLGELTKRAWEAGVQVMVEGP 265 (432)
T ss_pred hHHHHHHHHHcCCcCchhhhHHHHHHHHHHhCeeeeccCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHcCCEEEEECC
Confidence 999999999875533 66666766654 56433322 344444433 3344456666677666
Q ss_pred cccCCCCc
Q psy14072 185 AAQTYIPS 192 (205)
Q Consensus 185 ~~~~~~p~ 192 (205)
|-+|-
T Consensus 266 ---GHvpl 270 (432)
T COG0422 266 ---GHVPL 270 (432)
T ss_pred ---CcCcH
Confidence 65554
No 104
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=51.21 E-value=36 Score=29.34 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=11.4
Q ss_pred hcCCC----eEEEEcCCC
Q psy14072 108 KDEGG----CTLIHCVAG 121 (205)
Q Consensus 108 ~~~~~----~VlVHC~~G 121 (205)
+..|. .||.||.+|
T Consensus 140 I~dg~~~~~~ILThcnsg 157 (331)
T TIGR00512 140 IKKGVAAPLRVLTHCNTG 157 (331)
T ss_pred hcCCCCCCceEEeecCCc
Confidence 35577 899999988
No 105
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=50.84 E-value=17 Score=33.99 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHH---hCCCCHHHHHHHHHhhC
Q psy14072 111 GGCTLIHCVAGVSRSASLCLAYLIK---YNQMNFHQAFHYLRSLR 152 (205)
Q Consensus 111 ~~~VlVHC~~G~~RS~~v~~ayLm~---~~~~~~~~A~~~vr~~r 152 (205)
-.+..|||..|. ++++.++||+ ..+++.++|++.++.+-
T Consensus 160 ~~pdviH~ND~H---tal~~~el~r~l~~~~~~~~~a~~~~~~~~ 201 (601)
T TIGR02094 160 IDPDVYHLNEGH---AAFVTLERIRELIAQGLSFEEAWEAVRKSS 201 (601)
T ss_pred CCceEEEeCCch---HHHHHHHHHHHHHHcCCCHHHHHHhcCCeE
Confidence 488999999997 6899999865 46889999998777643
No 106
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=49.43 E-value=19 Score=29.28 Aligned_cols=47 Identities=21% Similarity=0.363 Sum_probs=28.7
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHhcCC-CeEEEEcC-CCCChHHHHHHHHHH
Q psy14072 85 ILDSATEPLDSYFDQVADLVQKIKDEG-GCTLIHCV-AGVSRSASLCLAYLI 134 (205)
Q Consensus 85 i~D~~~~~~~~~~~~~~~fi~~~~~~~-~~VlVHC~-~G~~RS~~v~~ayLm 134 (205)
+.|..... +++-+..+++.+..+| .+|+|||- .|.+-++.-+..||-
T Consensus 36 lSdGGVHS---h~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~ 84 (223)
T PF06415_consen 36 LSDGGVHS---HIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLE 84 (223)
T ss_dssp ESS-SSS-----HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHH
T ss_pred ecCCCccc---cHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHH
Confidence 34444444 4445555555566677 67999997 699988888888775
No 107
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=49.29 E-value=32 Score=32.27 Aligned_cols=30 Identities=17% Similarity=0.087 Sum_probs=19.8
Q ss_pred hcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCC
Q psy14072 108 KDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMN 140 (205)
Q Consensus 108 ~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 140 (205)
+..+++|+++|..|. ||+. + +++++..|.+
T Consensus 220 i~~~~~VVvYC~sG~-rAa~-~-~~~L~~lG~~ 249 (610)
T PRK09629 220 ITPDKEVITHCQTHH-RSGF-T-YLVAKALGYP 249 (610)
T ss_pred CCCCCCEEEECCCCh-HHHH-H-HHHHHHcCCC
Confidence 456789999999985 5543 2 3444566643
No 108
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=49.20 E-value=46 Score=22.95 Aligned_cols=35 Identities=11% Similarity=0.225 Sum_probs=21.1
Q ss_pred HHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCC
Q psy14072 102 DLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMN 140 (205)
Q Consensus 102 ~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 140 (205)
+++.. +..+.+++|+|..|. ||.. ++ -.++..|.+
T Consensus 50 ~~~~~-~~~~~~ivv~c~~g~-~s~~-a~-~~L~~~G~~ 84 (108)
T PRK00162 50 AFMRQ-ADFDTPVMVMCYHGN-SSQG-AA-QYLLQQGFD 84 (108)
T ss_pred HHHHh-cCCCCCEEEEeCCCC-CHHH-HH-HHHHHCCch
Confidence 34433 456889999999985 5532 22 234455554
No 109
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=49.10 E-value=46 Score=23.19 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=14.6
Q ss_pred cCCCeEEEEcCCCCChHHHHH
Q psy14072 109 DEGGCTLIHCVAGVSRSASLC 129 (205)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~ 129 (205)
....+|+|||..|-.||...+
T Consensus 60 ~~~~~iv~yC~~~~~r~~~aa 80 (113)
T cd01531 60 SKKDTVVFHCALSQVRGPSAA 80 (113)
T ss_pred CCCCeEEEEeecCCcchHHHH
Confidence 346799999985546775543
No 110
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=48.94 E-value=14 Score=24.70 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=11.4
Q ss_pred eEEEEcCCCCChH
Q psy14072 113 CTLIHCVAGVSRS 125 (205)
Q Consensus 113 ~VlVHC~~G~~RS 125 (205)
+|++-|.+|++-|
T Consensus 1 kIlvvC~~Gi~TS 13 (90)
T PF02302_consen 1 KILVVCGSGIGTS 13 (90)
T ss_dssp EEEEEESSSSHHH
T ss_pred CEEEECCChHHHH
Confidence 6899999999866
No 111
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=48.10 E-value=29 Score=24.16 Aligned_cols=30 Identities=7% Similarity=0.008 Sum_probs=19.1
Q ss_pred hcCCCeEEEEcCCCCC-hHHHHHHHHHHHhCCC
Q psy14072 108 KDEGGCTLIHCVAGVS-RSASLCLAYLIKYNQM 139 (205)
Q Consensus 108 ~~~~~~VlVHC~~G~~-RS~~v~~ayLm~~~~~ 139 (205)
+..+.+|+|+|..|.. ||.. ++ ..++..|.
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~-~a-~~l~~~G~ 91 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATK-AA-LKLAELGF 91 (110)
T ss_pred CCCCCeEEEEECCCCCchHHH-HH-HHHHHcCC
Confidence 4578999999998864 4433 33 33345555
No 112
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=47.92 E-value=2.4e+02 Score=26.32 Aligned_cols=182 Identities=14% Similarity=0.191 Sum_probs=102.0
Q ss_pred HHHHhhhccCCccccccCCCCCCCCCCCCCCCCceeeeCCEEEcCc-ccccc----------ccCCcceEEEcCCCCCCC
Q psy14072 4 EEIFQENVKKPWQFFSSTKNHPQISSNSSQLFEVTEVCPGLLLCGA-TMVGR----------TNHPVTCIVNAAPELPDP 72 (205)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~lylG~~-~a~~~----------~~~gI~~VInl~~~~~~~ 72 (205)
.|-++..+.....+++.+.+|++...-.--..--.+| |.-||+- ...+. .+.|-++|.+|.....-.
T Consensus 182 pE~vR~~VA~Gr~VIP~N~nh~~~~p~~IG~~~~tKV--NANIGtS~~~s~ieeEveK~~~A~~~GADtvMDLSTGgdi~ 259 (607)
T PRK09284 182 PEFVRDEVAAGRAIIPANINHPESEPMIIGRNFLVKI--NANIGNSAVTSSIEEEVEKMVWATRWGADTVMDLSTGKNIH 259 (607)
T ss_pred HHHHHHHHhCceEEeecCCCCCCCCeeEECCCceeEE--EeeecCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCHH
Confidence 3556778888889999999998754211111222344 3456666 44443 678999999998764211
Q ss_pred CC------CCCceEEEEeecCC------CCCChHHHHHHHHHHHHHHhcCC-CeEEEEcC-------------CC-CChH
Q psy14072 73 PL------ADTIKTVKIHILDS------ATEPLDSYFDQVADLVQKIKDEG-GCTLIHCV-------------AG-VSRS 125 (205)
Q Consensus 73 ~~------~~~~~~~~ipi~D~------~~~~~~~~~~~~~~fi~~~~~~~-~~VlVHC~-------------~G-~~RS 125 (205)
.. ...+-.=.+|+..- ...++ .++.+.+.|++..++| --+-|||. .| +||-
T Consensus 260 ~~R~~Il~~spvPvGTVPiYqA~~~~~~~~~~l--t~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~R~tgIVSRG 337 (607)
T PRK09284 260 ETREWILRNSPVPIGTVPIYQALEKVNGVAEDL--TWEIFRDTLIEQAEQGVDYFTIHAGVLLRYVPLTAKRVTGIVSRG 337 (607)
T ss_pred HHHHHHHHcCCCCccCccHHHHHHHhcCChhhC--CHHHHHHHHHHHHHhCCCEEEEChhhHHHHHHHHhCcccCcccCC
Confidence 00 00111112333211 01111 1345555566555555 35778885 22 5899
Q ss_pred HHHHHHHHHHhCCCC-----HHHHHHHHHhh----------CCCccC---CHHHHHHHHHHH---HHHhCCCceEeeecc
Q psy14072 126 ASLCLAYLIKYNQMN-----FHQAFHYLRSL----------RPCIRP---NLGFFKQLINYE---KRFYAESSVEIVYNA 184 (205)
Q Consensus 126 ~~v~~ayLm~~~~~~-----~~~A~~~vr~~----------rp~i~p---n~~f~~~L~~~e---~~l~~~~~~~~~~~~ 184 (205)
|++.++|++....-+ +++-++.+++. ||...- ...++..|..+- +.-......-+++-+
T Consensus 338 GSima~Wml~h~kENplYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~tLGELt~rA~e~gVQVMIEGP 417 (607)
T PRK09284 338 GSIMAKWCLAHHKENFLYTHFEEICEIMAAYDVSFSLGDGLRPGSIADANDEAQFAELETLGELTKIAWEHDVQVMIEGP 417 (607)
T ss_pred HHHHHHHHHHcCCcCcHHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 999999999876544 66667776665 453222 223555554432 333456666677766
Q ss_pred cccCCCCc
Q psy14072 185 AAQTYIPS 192 (205)
Q Consensus 185 ~~~~~~p~ 192 (205)
|-+|.
T Consensus 418 ---GHVPl 422 (607)
T PRK09284 418 ---GHVPM 422 (607)
T ss_pred ---CCCcH
Confidence 66654
No 113
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=47.89 E-value=19 Score=29.96 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=18.9
Q ss_pred hcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCC
Q psy14072 108 KDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMN 140 (205)
Q Consensus 108 ~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 140 (205)
+..+++|+++|..|. || +.++.+| +..|.+
T Consensus 228 ~~~~~~ii~yC~~G~-~A-~~~~~~l-~~~G~~ 257 (281)
T PRK11493 228 VSFDRPIIASCGSGV-TA-AVVVLAL-ATLDVP 257 (281)
T ss_pred CCCCCCEEEECCcHH-HH-HHHHHHH-HHcCCC
Confidence 345789999999886 44 4443333 455554
No 114
>PRK05569 flavodoxin; Provisional
Probab=47.59 E-value=84 Score=22.73 Aligned_cols=90 Identities=10% Similarity=-0.004 Sum_probs=49.5
Q ss_pred CceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEcCCCCC-hHHHHHHHHHHHhCCCCHHHHHHHHHhhCCCc
Q psy14072 77 TIKTVKIHILDSATEPLDSYFDQVADLVQKIKDEGGCTLIHCVAGVS-RSASLCLAYLIKYNQMNFHQAFHYLRSLRPCI 155 (205)
Q Consensus 77 ~~~~~~ipi~D~~~~~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~-RS~~v~~ayLm~~~~~~~~~A~~~vr~~rp~i 155 (205)
..-.+.-|+....... .+.+..+++.+.....+|++|.+-++.|.+ ..+.-.+.-++...|++.-..+ .- .-
T Consensus 50 d~iilgsPty~~~~~~-~~~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~~---~~---~~ 122 (141)
T PRK05569 50 DAVAFGSPSMDNNNIE-QEEMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGDL---AV---NE 122 (141)
T ss_pred CEEEEECCCcCCCcCC-hHHHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeeeE---EE---cc
Confidence 3444555665543221 123344444443333468999999999876 2332233444455666543321 11 13
Q ss_pred cCCHHHHHHHHHHHHHHh
Q psy14072 156 RPNLGFFKQLINYEKRFY 173 (205)
Q Consensus 156 ~pn~~f~~~L~~~e~~l~ 173 (205)
.|+..-+.++.+|-+.|.
T Consensus 123 ~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 123 SPNKEELNSAKELGKKLA 140 (141)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 488888888888877663
No 115
>KOG0235|consensus
Probab=46.90 E-value=62 Score=26.13 Aligned_cols=49 Identities=16% Similarity=0.149 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHHHHh----cCCCeEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHH
Q psy14072 92 PLDSYFDQVADLVQKIK----DEGGCTLIHCVAGVSRSASLCLAYLIKYNQMNFHQAFH 146 (205)
Q Consensus 92 ~~~~~~~~~~~fi~~~~----~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~ 146 (205)
.+...+.++..|.++.+ ..|+.|+|+|+...-| +++++..|.+.++...
T Consensus 133 sL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGnsLR------~i~~~l~g~s~~~i~~ 185 (214)
T KOG0235|consen 133 SLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNSLR------AIVKHLEGISDEAIKE 185 (214)
T ss_pred cHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHHHH------HHHHHHhcCCHhhhhh
Confidence 45667777777777655 4589999998763333 4566677888655443
No 116
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=46.51 E-value=60 Score=21.11 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=18.7
Q ss_pred hcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCC
Q psy14072 108 KDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMN 140 (205)
Q Consensus 108 ~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 140 (205)
...+.+|+|+|..| .|+ ..+++.++..|.+
T Consensus 53 ~~~~~~iv~~c~~g-~~a--~~~~~~l~~~G~~ 82 (100)
T smart00450 53 LDKDKPVVVYCRSG-NRS--AKAAWLLRELGFK 82 (100)
T ss_pred CCCCCeEEEEeCCC-cHH--HHHHHHHHHcCCC
Confidence 45689999999665 355 3334445555554
No 117
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=46.38 E-value=60 Score=27.69 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=17.7
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHHhCCC
Q psy14072 109 DEGGCTLIHCVAGVSRSASLCLAYLIKYNQM 139 (205)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 139 (205)
..+..|+|+|..|-.||..++ .++...|+
T Consensus 72 ~~~~~vvvyC~~gG~RS~~aa--~~L~~~G~ 100 (311)
T TIGR03167 72 DGPPQPLLYCWRGGMRSGSLA--WLLAQIGF 100 (311)
T ss_pred CCCCcEEEEECCCChHHHHHH--HHHHHcCC
Confidence 344569999976557875543 33445554
No 118
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=45.15 E-value=61 Score=23.73 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHH
Q psy14072 94 DSYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLCL 130 (205)
Q Consensus 94 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ 130 (205)
.+.+.++.+.+.+.+.+|++|++. |.|-|++++.
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~~---G~G~S~~~a~ 51 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFVC---GNGHSAAIAS 51 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEE---ESTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---cCchhhhHHH
Confidence 466788899999999889988887 5556665543
No 119
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=44.59 E-value=62 Score=25.87 Aligned_cols=37 Identities=16% Similarity=0.313 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhCC
Q psy14072 96 YFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLIKYNQ 138 (205)
Q Consensus 96 ~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~ 138 (205)
.|.++++.|-+ ..++|+|- |.||||.++=++-|+...
T Consensus 27 ~~~~a~~~i~~---~~gkv~V~---G~GkSG~Igkk~Aa~L~s 63 (202)
T COG0794 27 DFVRAVELILE---CKGKVFVT---GVGKSGLIGKKFAARLAS 63 (202)
T ss_pred HHHHHHHHHHh---cCCcEEEE---cCChhHHHHHHHHHHHHc
Confidence 34444444443 47888886 999999999888777643
No 120
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=44.21 E-value=24 Score=27.95 Aligned_cols=24 Identities=21% Similarity=0.294 Sum_probs=20.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhh
Q psy14072 128 LCLAYLIKYNQMNFHQAFHYLRSL 151 (205)
Q Consensus 128 v~~ayLm~~~~~~~~~A~~~vr~~ 151 (205)
-+=+.||+.+|++-++||+++|+.
T Consensus 149 rAKglLM~~~g~sE~EAy~~lR~~ 172 (194)
T COG3707 149 RAKGLLMKRRGLSEEEAYKLLRRT 172 (194)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHH
Confidence 345789999999999999999976
No 121
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=43.37 E-value=27 Score=24.55 Aligned_cols=38 Identities=18% Similarity=0.402 Sum_probs=30.0
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHHhCCCC-HHHHHHHHHhh
Q psy14072 109 DEGGCTLIHCVAGVSRSASLCLAYLIKYNQMN-FHQAFHYLRSL 151 (205)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~-~~~A~~~vr~~ 151 (205)
+...+|+=||..| +-++-||+.....+ -.||+..-...
T Consensus 22 ~~~~tv~~hcftG-----sdVVdWLv~~~~v~~r~EAl~las~L 60 (99)
T cd04445 22 EKDKKVFNHCFTG-----SCVIDWLVSNQSVRNRQEGLMLASSL 60 (99)
T ss_pred HHhhccccceecc-----cHHHHHHHHhhcccchHHHHHHHHHH
Confidence 3468999999988 66889999988876 88888765543
No 122
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=43.29 E-value=62 Score=28.07 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=13.3
Q ss_pred hcCCCeEEEEcCCCCCh
Q psy14072 108 KDEGGCTLIHCVAGVSR 124 (205)
Q Consensus 108 ~~~~~~VlVHC~~G~~R 124 (205)
+..|..||.||.+|.-.
T Consensus 144 I~~g~~ILThc~sg~la 160 (344)
T PRK05720 144 IRKGQGILTHCNAGWLA 160 (344)
T ss_pred ccCCCEEEEecCCCcce
Confidence 45688999999998643
No 123
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=43.14 E-value=28 Score=29.11 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=19.1
Q ss_pred CCCChHHHHHHHHHHHhCCCCHHHHHHH
Q psy14072 120 AGVSRSASLCLAYLIKYNQMNFHQAFHY 147 (205)
Q Consensus 120 ~G~~RS~~v~~ayLm~~~~~~~~~A~~~ 147 (205)
=|.||||+-+.+-|. .|.+.+.|.++
T Consensus 165 PG~SRSGaTI~~~ll--lG~~r~~Aaef 190 (270)
T COG1968 165 PGTSRSGATISGGLL--LGLSREAAAEF 190 (270)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 599999887777664 46777777654
No 124
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=42.71 E-value=68 Score=27.30 Aligned_cols=72 Identities=11% Similarity=0.169 Sum_probs=40.1
Q ss_pred eeCCEEEcCc-ccccc----ccCCcceEEEcCCCCCCCCCCCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhc--CCC
Q psy14072 40 VCPGLLLCGA-TMVGR----TNHPVTCIVNAAPELPDPPLADTIKTVKIHILDSATEPLDSYFDQVADLVQKIKD--EGG 112 (205)
Q Consensus 40 I~~~lylG~~-~a~~~----~~~gI~~VInl~~~~~~~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~fi~~~~~--~~~ 112 (205)
|.|.-.+|.+ .+.++ .+.+ +.||+..+.-+.. .. ...+--.++ ...|.+.-+++.+... .++
T Consensus 105 v~p~~~vG~yl~p~~wn~~l~D~~-~vviDtRN~YE~~-iG--------~F~gAv~p~-~~tFrefP~~v~~~~~~~~~K 173 (308)
T COG1054 105 VDPLENVGTYLSPKDWNELLSDPD-VVVIDTRNDYEVA-IG--------HFEGAVEPD-IETFREFPAWVEENLDLLKDK 173 (308)
T ss_pred cCccccccCccCHHHHHHHhcCCC-eEEEEcCcceeEe-ee--------eecCccCCC-hhhhhhhHHHHHHHHHhccCC
Confidence 5555555666 66655 2223 5666666542211 11 111222222 5566666666665543 478
Q ss_pred eEEEEcCCCC
Q psy14072 113 CTLIHCVAGV 122 (205)
Q Consensus 113 ~VlVHC~~G~ 122 (205)
+|+..|+.|+
T Consensus 174 kVvmyCTGGI 183 (308)
T COG1054 174 KVVMYCTGGI 183 (308)
T ss_pred cEEEEcCCce
Confidence 9999999998
No 125
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=42.37 E-value=1.5e+02 Score=22.47 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHH
Q psy14072 94 DSYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLC 129 (205)
Q Consensus 94 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~ 129 (205)
.+.++++++.|.+.+.++++|++. |.|.|..++
T Consensus 16 ~~~i~~a~~~i~~~i~~~~~I~i~---G~G~S~~~A 48 (177)
T cd05006 16 AEAIEQAAQLLAEALLNGGKILIC---GNGGSAADA 48 (177)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 567888999998888888898887 666665544
No 126
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=42.02 E-value=47 Score=27.35 Aligned_cols=57 Identities=9% Similarity=-0.031 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHH------HHHhCCCCHHHHHHHHHh
Q psy14072 94 DSYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAY------LIKYNQMNFHQAFHYLRS 150 (205)
Q Consensus 94 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ay------Lm~~~~~~~~~A~~~vr~ 150 (205)
..+.+-+..+++.+.+.+.+|.|||........-++-.| +++.+.=+.+.|-.+++.
T Consensus 110 ~~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~~~~~~il~~~~~~~~~i~H~fsG~~~~a~~~l~~ 172 (258)
T PRK11449 110 ERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQL 172 (258)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCccHHHHHHHHhcCCCCCeEEEcCCCCHHHHHHHHHC
Confidence 345566667777777789999999987655554444433 122233467888888775
No 127
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=40.79 E-value=45 Score=22.44 Aligned_cols=18 Identities=22% Similarity=0.549 Sum_probs=13.8
Q ss_pred hcCCCeEEEEcCCCCChHH
Q psy14072 108 KDEGGCTLIHCVAGVSRSA 126 (205)
Q Consensus 108 ~~~~~~VlVHC~~G~~RS~ 126 (205)
+..+.+|+++|..|. ||.
T Consensus 51 ~~~~~~iv~~c~~g~-~s~ 68 (99)
T cd01527 51 LVGANAIIFHCRSGM-RTQ 68 (99)
T ss_pred CCCCCcEEEEeCCCc-hHH
Confidence 456789999999984 443
No 128
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=40.62 E-value=46 Score=28.33 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=22.1
Q ss_pred HHHHHHHHH-HhcCCCeEEEEcCCCCChHHHHHHHHHHHhCCC
Q psy14072 98 DQVADLVQK-IKDEGGCTLIHCVAGVSRSASLCLAYLIKYNQM 139 (205)
Q Consensus 98 ~~~~~fi~~-~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 139 (205)
+++-+.+.+ .+..+.+|+++|..|. || +++ +++++..|.
T Consensus 255 ~el~~~~~~~gi~~~~~iv~yC~sG~-~A-~~~-~~~L~~~G~ 294 (320)
T PLN02723 255 EELKKRFEQEGISLDSPIVASCGTGV-TA-CIL-ALGLHRLGK 294 (320)
T ss_pred HHHHHHHHhcCCCCCCCEEEECCcHH-HH-HHH-HHHHHHcCC
Confidence 334443433 2456889999998875 33 333 333345565
No 129
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=40.51 E-value=77 Score=27.47 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=19.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHHhCCC
Q psy14072 110 EGGCTLIHCVAGVSRSASLCLAYLIKYNQM 139 (205)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 139 (205)
.+.+|+|+|..|-.||..++ .++...|+
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa--~~L~~~G~ 114 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQ--QWLKEAGI 114 (345)
T ss_pred CCCeEEEEECCCChHHHHHH--HHHHHcCC
Confidence 67899999987667886653 33345554
No 130
>PHA02540 61 DNA primase; Provisional
Probab=40.45 E-value=51 Score=28.53 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=29.7
Q ss_pred CeEEEEcC-CCCChHHHHHHHHHHHhCCCCHHHHHHHHHhhC
Q psy14072 112 GCTLIHCV-AGVSRSASLCLAYLIKYNQMNFHQAFHYLRSLR 152 (205)
Q Consensus 112 ~~VlVHC~-~G~~RS~~v~~ayLm~~~~~~~~~A~~~vr~~r 152 (205)
+....||. .|.+.. ++.|||...++++.||++.+-+..
T Consensus 52 ~~~~yhCFgCGa~Gd---~i~Flme~e~lsf~Eav~~la~~~ 90 (337)
T PHA02540 52 DGGVFKCHNCGYHRP---FGNFLKDYEPDLYREYIMERFKER 90 (337)
T ss_pred CceEEEecCCCCCCC---HHHHHHHhcCCChHHHHHHHHHHh
Confidence 36789997 566543 789999999999999999665544
No 131
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=40.39 E-value=81 Score=25.64 Aligned_cols=58 Identities=21% Similarity=0.294 Sum_probs=38.8
Q ss_pred EeecCCCCCC-hHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCC
Q psy14072 83 IHILDSATEP-LDSYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMN 140 (205)
Q Consensus 83 ipi~D~~~~~-~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 140 (205)
.|+.|...+. .....+.+++.|.+...+.+..+.-|-+|-=++-++.++|.+..+|-.
T Consensus 82 ~~l~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~lh~sIAGGRKtMs~~~~~a~sL~gr~ 140 (224)
T PF09623_consen 82 LPLDDIRTEEDNEAFADFIYRLIRELKQDPGRRLHVSIAGGRKTMSFYAGYAASLFGRP 140 (224)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCChHHHHHHHHHHHHHcCCc
Confidence 4556655442 344556677777777666567777778886678888888887777633
No 132
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=39.95 E-value=28 Score=24.00 Aligned_cols=16 Identities=19% Similarity=0.327 Sum_probs=12.8
Q ss_pred CeEEEEcCCCCChHHH
Q psy14072 112 GCTLIHCVAGVSRSAS 127 (205)
Q Consensus 112 ~~VlVHC~~G~~RS~~ 127 (205)
.+||+-|.+|.+-|-.
T Consensus 3 ~kILvvCgsG~~TS~m 18 (94)
T PRK10310 3 RKIIVACGGAVATSTM 18 (94)
T ss_pred CeEEEECCCchhHHHH
Confidence 3799999999986633
No 133
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=39.68 E-value=76 Score=27.23 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCCCeEEEEcCCCCC-hHHHHHHHHHHHhCC----CCHHHHHHHHHhhCCCccCCHHHHHHHH---HHHHH
Q psy14072 100 VADLVQKIKDEGGCTLIHCVAGVS-RSASLCLAYLIKYNQ----MNFHQAFHYLRSLRPCIRPNLGFFKQLI---NYEKR 171 (205)
Q Consensus 100 ~~~fi~~~~~~~~~VlVHC~~G~~-RS~~v~~ayLm~~~~----~~~~~A~~~vr~~rp~i~pn~~f~~~L~---~~e~~ 171 (205)
+..++-. ..|.+|+.|...|++ ++++ +=++...| .+.+++.+.+.+......+-+.|-..+. ...+.
T Consensus 90 ~~a~vlA--~~G~~V~kHG~r~~~s~~Gs---~d~le~LGi~~~~s~~~~~~~l~~~g~~f~~~~~~~P~~~~l~~lR~~ 164 (330)
T TIGR01245 90 ASAFVAA--AAGVKVAKHGNRSVSSKSGS---ADVLEALGVNLDLGPEKVARSLEETGIGFLFAPLYHPAMKHVAPVRRE 164 (330)
T ss_pred HHHHHHH--hCCCEEEEeCCCCCCCCccH---HHHHHHcCCCCCCCHHHHHHHHHHhCcEEeechhhCHHHHHHHHHHHH
Confidence 4444443 469999999998887 7765 33445555 5678899999887654444444444333 33333
Q ss_pred HhCCCce----EeeecccccCCCCccchhhhcc
Q psy14072 172 FYAESSV----EIVYNAAAQTYIPSVYEEDYSN 200 (205)
Q Consensus 172 l~~~~~~----~~~~~~~~~~~~p~~~~~~~~~ 200 (205)
|--+... .++++-.+...+-.+|.+++..
T Consensus 165 lg~rT~~N~lgpL~NP~~~~~~v~Gv~~~~~~~ 197 (330)
T TIGR01245 165 LGVRTVFNLLGPLTNPARPKYQVIGVYDPDLVE 197 (330)
T ss_pred hCCCCHHHHHHHhcCCCCCCCEEEcccCHHHHH
Confidence 3323332 2333333345566666665543
No 134
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=39.17 E-value=44 Score=23.26 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=19.0
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHHhCCCC
Q psy14072 109 DEGGCTLIHCVAGVSRSASLCLAYLIKYNQMN 140 (205)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 140 (205)
..+.+|+|+|..|. ||.. +++.....|.+
T Consensus 76 ~~~~~iv~yc~~g~-~s~~--~~~~l~~~G~~ 104 (118)
T cd01449 76 TPDKPVIVYCGSGV-TACV--LLLALELLGYK 104 (118)
T ss_pred CCCCCEEEECCcHH-HHHH--HHHHHHHcCCC
Confidence 46789999999874 5543 34444556653
No 135
>PRK07411 hypothetical protein; Validated
Probab=38.77 E-value=42 Score=29.50 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=19.4
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHHhCCCC
Q psy14072 109 DEGGCTLIHCVAGVSRSASLCLAYLIKYNQMN 140 (205)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 140 (205)
.++++|+|+|..|. ||.. ++. .++..|++
T Consensus 340 ~~d~~IVvyC~~G~-RS~~-aa~-~L~~~G~~ 368 (390)
T PRK07411 340 LNGHRLIAHCKMGG-RSAK-ALG-ILKEAGIE 368 (390)
T ss_pred CCCCeEEEECCCCH-HHHH-HHH-HHHHcCCC
Confidence 35789999999885 7743 333 34566654
No 136
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=38.06 E-value=70 Score=28.98 Aligned_cols=29 Identities=31% Similarity=0.361 Sum_probs=19.6
Q ss_pred hcCCCeEEEEcCCCCChHHHHHHHHHHHhCCC
Q psy14072 108 KDEGGCTLIHCVAGVSRSASLCLAYLIKYNQM 139 (205)
Q Consensus 108 ~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 139 (205)
+..+++++++|.+|. || +.++.+|- ..|.
T Consensus 446 l~~~~~iivyC~~G~-rS-~~aa~~L~-~~G~ 474 (482)
T PRK01269 446 LDQSKTYLLYCDRGV-MS-RLQALYLR-EQGF 474 (482)
T ss_pred cCCCCeEEEECCCCH-HH-HHHHHHHH-HcCC
Confidence 356789999999995 76 44445553 4554
No 137
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=37.08 E-value=57 Score=20.93 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=17.6
Q ss_pred hcCCCeEEEEcCCCCChHHHHHHHHHHHhCC
Q psy14072 108 KDEGGCTLIHCVAGVSRSASLCLAYLIKYNQ 138 (205)
Q Consensus 108 ~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~ 138 (205)
...+.+|+|+|..|. || ..++ ..++..|
T Consensus 47 ~~~~~~vv~~c~~~~-~a-~~~~-~~l~~~G 74 (89)
T cd00158 47 LDKDKPIVVYCRSGN-RS-ARAA-KLLRKAG 74 (89)
T ss_pred cCCCCeEEEEeCCCc-hH-HHHH-HHHHHhC
Confidence 357899999999973 44 3333 3344444
No 138
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=36.40 E-value=90 Score=26.12 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHH
Q psy14072 98 DQVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLI 134 (205)
Q Consensus 98 ~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm 134 (205)
.+..+.|...+.+|+.+++.-..|.|.|.++.++.+-
T Consensus 14 ~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~ 50 (289)
T smart00489 14 YEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLT 50 (289)
T ss_pred HHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHH
Confidence 5566666777778999999999999999777766653
No 139
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=36.40 E-value=90 Score=26.12 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHH
Q psy14072 98 DQVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLI 134 (205)
Q Consensus 98 ~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm 134 (205)
.+..+.|...+.+|+.+++.-..|.|.|.++.++.+-
T Consensus 14 ~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~ 50 (289)
T smart00488 14 YEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLT 50 (289)
T ss_pred HHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHH
Confidence 5566666777778999999999999999777766653
No 140
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=35.69 E-value=87 Score=23.88 Aligned_cols=68 Identities=22% Similarity=0.226 Sum_probs=41.7
Q ss_pred HHHHHHHHHHh--cCCCeEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHH
Q psy14072 98 DQVADLVQKIK--DEGGCTLIHCVAGVSRSASLCLAYLIKYNQMNFHQAFHYLRSLRPCIRPNLGFFKQLINYEK 170 (205)
Q Consensus 98 ~~~~~fi~~~~--~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~vr~~rp~i~pn~~f~~~L~~~e~ 170 (205)
..+.++|.... ..+.+|+|-|-.|.+=.-++++|-.+...|+... + --..+.-..++.+..++..++.
T Consensus 10 ~~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~-v----~~~~~~~~~~~~~~~~~~~~~~ 79 (169)
T PF03853_consen 10 RAIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVT-V----YLVGPPEKLSEDAKQQLEILKK 79 (169)
T ss_dssp HHHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEE-E----EEEESSSSTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEE-E----EEEeccccCCHHHHHHHHHHHh
Confidence 34667787777 7799999999999877766777766667776531 1 0111222445556666665544
No 141
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=35.28 E-value=52 Score=22.89 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcC
Q psy14072 97 FDQVADLVQKIKDEGGCTLIHCV 119 (205)
Q Consensus 97 ~~~~~~fi~~~~~~~~~VlVHC~ 119 (205)
+.++.+.++.+...|.++.+||.
T Consensus 32 it~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 32 ITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp HHHHHHHHHHHHHTT-EEEEBSS
T ss_pred HHHHHHHHHHHHHhCCCEEecCC
Confidence 57778888888888999999996
No 142
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=34.65 E-value=1.1e+02 Score=22.04 Aligned_cols=87 Identities=15% Similarity=0.178 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhCCC--------CH-HHHHHHHHhhCC-------CccCC
Q psy14072 95 SYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLIKYNQM--------NF-HQAFHYLRSLRP-------CIRPN 158 (205)
Q Consensus 95 ~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~--------~~-~~A~~~vr~~rp-------~i~pn 158 (205)
..+.++.+-+.+....+.+|+|..-.|.|++- ++.|+....+. .. ....+.+.+... .-..+
T Consensus 5 ~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~--~A~~lh~~~~~~~~~~~~~~~~~~~~~~l~~a~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 5 PAMRRLRRQLERLAKSSSPVLITGEPGTGKSL--LARALHRYSGRANGPFIVIDCASLPAELLEQAKGGTLYLKNIDRLS 82 (138)
T ss_dssp HHHHHHHHHHHHHHCSSS-EEEECCTTSSHHH--HHHCCHHTTTTCCS-CCCCCHHCTCHHHHHHCTTSEEEEECGCCS-
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHH--HHHHHHhhcCccCCCeEEechhhCcHHHHHHcCCCEEEECChHHCC
Confidence 45678888888888889999999999999984 34444433221 00 001233334332 22345
Q ss_pred HHHHHHHHHHHHHHhCCCceEeeecc
Q psy14072 159 LGFFKQLINYEKRFYAESSVEIVYNA 184 (205)
Q Consensus 159 ~~f~~~L~~~e~~l~~~~~~~~~~~~ 184 (205)
+.....|..+=.... +..++++.+.
T Consensus 83 ~~~Q~~L~~~l~~~~-~~~~RlI~ss 107 (138)
T PF14532_consen 83 PEAQRRLLDLLKRQE-RSNVRLIASS 107 (138)
T ss_dssp HHHHHHHHHHHHHCT-TTTSEEEEEE
T ss_pred HHHHHHHHHHHHhcC-CCCeEEEEEe
Confidence 566666665544322 4556766554
No 143
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=34.55 E-value=88 Score=26.19 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=24.7
Q ss_pred CCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEcC
Q psy14072 76 DTIKTVKIHILDSATEPLDSYFDQVADLVQKIKDEGGCTLIHCV 119 (205)
Q Consensus 76 ~~~~~~~ipi~D~~~~~~~~~~~~~~~fi~~~~~~~~~VlVHC~ 119 (205)
-|+.|+. |++.++ ++++++.++...+-.+||+||..
T Consensus 234 LG~~Y~G-PiDGHd-------l~~Li~~l~~~K~~~gPvllHV~ 269 (270)
T PF13292_consen 234 LGFDYIG-PIDGHD-------LEELIEVLENAKDIDGPVLLHVI 269 (270)
T ss_dssp CT-EEEE-EEETT--------HHHHHHHHHHHCCSSSEEEEEEE
T ss_pred cCCeEEe-ccCCCC-------HHHHHHHHHHHhcCCCCEEEEEe
Confidence 4677776 777765 35566666677777999999963
No 144
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=34.35 E-value=82 Score=27.50 Aligned_cols=13 Identities=54% Similarity=0.938 Sum_probs=9.8
Q ss_pred cCCCeEEEEcCCCC
Q psy14072 109 DEGGCTLIHCVAGV 122 (205)
Q Consensus 109 ~~~~~VlVHC~~G~ 122 (205)
..|. ||-||.+|-
T Consensus 159 ~dg~-ILTHcnaG~ 171 (356)
T PRK08334 159 PEGN-VLTHCNAGS 171 (356)
T ss_pred CCCC-EEEecCcch
Confidence 3455 999998874
No 145
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=34.28 E-value=35 Score=24.15 Aligned_cols=83 Identities=17% Similarity=0.024 Sum_probs=39.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHHH---HhCCCC-------HHHHHHHHHh-hCCCccCCHHHHHHHHHHHHHHhCC-CceE
Q psy14072 112 GCTLIHCVAGVSRSASLCLAYLI---KYNQMN-------FHQAFHYLRS-LRPCIRPNLGFFKQLINYEKRFYAE-SSVE 179 (205)
Q Consensus 112 ~~VlVHC~~G~~RS~~v~~ayLm---~~~~~~-------~~~A~~~vr~-~rp~i~pn~~f~~~L~~~e~~l~~~-~~~~ 179 (205)
++||+-|.+|.+-| +++--+- ..+|.+ ..+.-..+.. ..-.+...+.-...+.++.+..... -.+.
T Consensus 2 kkILlvCg~G~STS--lla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~~~~ipv~ 79 (104)
T PRK09590 2 KKALIICAAGMSSS--MMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGAKVGKPVV 79 (104)
T ss_pred cEEEEECCCchHHH--HHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHHHHHHHHHHHHhhhcCCCEE
Confidence 47999999999544 3333221 224443 2222122121 1223444555555556666655443 3344
Q ss_pred eeecccccCCCCccchhh
Q psy14072 180 IVYNAAAQTYIPSVYEED 197 (205)
Q Consensus 180 ~~~~~~~~~~~p~~~~~~ 197 (205)
.++.. .++++|...++=
T Consensus 80 ~I~~~-~Y~~~~~~~~~~ 96 (104)
T PRK09590 80 QIPPQ-AYIPIPMGIEKM 96 (104)
T ss_pred EeCHH-HcCCCccCHHHH
Confidence 44433 466666554443
No 146
>KOG1004|consensus
Probab=33.99 E-value=1e+02 Score=24.95 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=32.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q psy14072 110 EGGCTLIHCVAGVSRSASLCLAYLIKYNQMNFHQAFHYLRSL 151 (205)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~vr~~ 151 (205)
-+++|.|||.. .+....++-+||....|+-++++.++++.
T Consensus 184 lNGriWV~ae~--~~~t~~i~~~l~~~e~~td~~q~~~~k~~ 223 (230)
T KOG1004|consen 184 LNGRIWVKAET--LSDTLIIANILMNCEFMTDTQQRIMVKQL 223 (230)
T ss_pred cCceEEEeccC--cchHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 48999999976 35567778899999999999988777764
No 147
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=32.34 E-value=53 Score=28.72 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=17.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHHhCCC
Q psy14072 112 GCTLIHCVAGVSRSASLCLAYLIKYNQM 139 (205)
Q Consensus 112 ~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 139 (205)
.+|+|||.+| .||. .++.+|. ..|.
T Consensus 333 ~~Ivv~C~sG-~RS~-~Aa~~L~-~~G~ 357 (370)
T PRK05600 333 DNVVVYCASG-IRSA-DFIEKYS-HLGH 357 (370)
T ss_pred CcEEEECCCC-hhHH-HHHHHHH-HcCC
Confidence 3899999999 5774 4445553 4554
No 148
>cd01720 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D2 heterodimerizes with subunit D1 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing D2, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=32.26 E-value=60 Score=22.19 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=21.7
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCChHHHH
Q psy14072 101 ADLVQKIKDEGGCTLIHCVAGVSRSASL 128 (205)
Q Consensus 101 ~~fi~~~~~~~~~VlVHC~~G~~RS~~v 128 (205)
.+++..++..+++|+|++..|..=.|++
T Consensus 4 l~~L~~~~~~~~~V~V~lr~~r~~~G~L 31 (87)
T cd01720 4 LSLLTQAVKNNTQVLINCRNNKKLLGRV 31 (87)
T ss_pred HHHHHHHHcCCCEEEEEEcCCCEEEEEE
Confidence 3567778778999999999997655443
No 149
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=31.99 E-value=52 Score=23.24 Aligned_cols=61 Identities=11% Similarity=0.024 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCCChHHHH-HHHHHHHhCCCCHH-HH--HHHHHh---hCCCccCCHHHHHHHHHHHHH
Q psy14072 111 GGCTLIHCVAGVSRSASL-CLAYLIKYNQMNFH-QA--FHYLRS---LRPCIRPNLGFFKQLINYEKR 171 (205)
Q Consensus 111 ~~~VlVHC~~G~~RS~~v-~~ayLm~~~~~~~~-~A--~~~vr~---~rp~i~pn~~f~~~L~~~e~~ 171 (205)
.++||+.|.+|.|-|-.+ -+--.....|++.+ +| ...... ..-.+...+.+..++.+..+.
T Consensus 3 ~kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~~~~~~~~~~~~DviLl~Pqi~~~~~~i~~~ 70 (106)
T PRK10499 3 KKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRL 70 (106)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEeecchhhccccCCCEEEECHHHHHHHHHHHhh
Confidence 368999999999977433 12222245555421 12 122211 123455566666666655443
No 150
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=31.36 E-value=38 Score=23.35 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=32.4
Q ss_pred eEEEEcCCCCChHHHHHHHHH---HHhCCCC-------HHHHHHHHHhhCCCccCCHHHHHHHHHHHHHH
Q psy14072 113 CTLIHCVAGVSRSASLCLAYL---IKYNQMN-------FHQAFHYLRSLRPCIRPNLGFFKQLINYEKRF 172 (205)
Q Consensus 113 ~VlVHC~~G~~RS~~v~~ayL---m~~~~~~-------~~~A~~~vr~~rp~i~pn~~f~~~L~~~e~~l 172 (205)
+||+-|.+|.+-| .+ +--+ +..+|++ ..++-... ...-.+...+.+..++.++++..
T Consensus 1 kIl~~Cg~G~sTS-~~-~~ki~~~~~~~~~~~~v~~~~~~~~~~~~-~~~Diil~~Pqv~~~~~~i~~~~ 67 (96)
T cd05564 1 KILLVCSAGMSTS-IL-VKKMKKAAEKRGIDAEIEAVPESELEEYI-DDADVVLLGPQVRYMLDEVKKKA 67 (96)
T ss_pred CEEEEcCCCchHH-HH-HHHHHHHHHHCCCceEEEEecHHHHHHhc-CCCCEEEEChhHHHHHHHHHHHh
Confidence 4899999999766 33 2222 1224442 33322221 22345666777777787777654
No 151
>PRK13936 phosphoheptose isomerase; Provisional
Probab=31.11 E-value=1.6e+02 Score=22.99 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHH
Q psy14072 95 SYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAY 132 (205)
Q Consensus 95 ~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ay 132 (205)
+.+.++++.+-+.+.++++|++. |.|.|+.++.-+
T Consensus 27 ~~i~~a~~~~~~~l~~a~~I~i~---G~G~S~~~A~~~ 61 (197)
T PRK13936 27 PPIAQAVELMVQALLNEGKILAC---GNGGSAADAQHF 61 (197)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE---eCcHhHHHHHHH
Confidence 45667787888888889999998 777776655433
No 152
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=31.03 E-value=1e+02 Score=20.00 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhh
Q psy14072 126 ASLCLAYLIKYNQMNFHQAFHYLRSL 151 (205)
Q Consensus 126 ~~v~~ayLm~~~~~~~~~A~~~vr~~ 151 (205)
+|=++=||++. |+++.+|...|-+.
T Consensus 4 ATdlAD~LVr~-GipFR~AH~iVg~~ 28 (70)
T PF14698_consen 4 ATDLADYLVRK-GIPFREAHHIVGRL 28 (70)
T ss_dssp HHHHHHHHHHT-TS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence 45567788877 99999999987655
No 153
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=30.93 E-value=1.2e+02 Score=25.11 Aligned_cols=40 Identities=8% Similarity=0.070 Sum_probs=23.2
Q ss_pred HHHHHHHHH-hcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCC
Q psy14072 99 QVADLVQKI-KDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMN 140 (205)
Q Consensus 99 ~~~~fi~~~-~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 140 (205)
++.+++.+. +..+.+|+|+|..|. ++++ .+++++...|..
T Consensus 74 ~~~~~~~~~Gi~~d~~VVvyc~~~~-~~a~-~~~~~l~~~G~~ 114 (281)
T PRK11493 74 TFAVAMRELGVNQDKHLVVYDEGNL-FSAP-RAWWMLRTFGVE 114 (281)
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCC-chHH-HHHHHHHHhcCC
Confidence 344444443 456889999998764 4433 234445566644
No 154
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=30.87 E-value=1.2e+02 Score=26.32 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=19.4
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHHhCCCC
Q psy14072 109 DEGGCTLIHCVAGVSRSASLCLAYLIKYNQMN 140 (205)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 140 (205)
..+.+|+|+|..|. ||.. + +.+++..|.+
T Consensus 55 ~~~~~IvvyC~~G~-rs~~-a-a~~L~~~G~~ 83 (376)
T PRK08762 55 DRDREIVLICASGT-RSAH-A-AATLRELGYT 83 (376)
T ss_pred CCCCeEEEEcCCCc-HHHH-H-HHHHHHcCCC
Confidence 56899999999884 6643 3 3344566653
No 155
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=30.50 E-value=43 Score=24.26 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=23.4
Q ss_pred CCCChHHHHHHHHHHHhCCCCHHHHHHHHHhhC
Q psy14072 120 AGVSRSASLCLAYLIKYNQMNFHQAFHYLRSLR 152 (205)
Q Consensus 120 ~G~~RS~~v~~ayLm~~~~~~~~~A~~~vr~~r 152 (205)
.|++|+.+.+++||+.....+- .-++.+...|
T Consensus 23 lgi~R~vA~tlv~L~~~~E~sS-~~IE~~sgLR 54 (124)
T COG4738 23 LGIPRNVATTLVCLAKGDEASS-REIERVSGLR 54 (124)
T ss_pred cCCCchHHHHHHHHhcCcchhh-hhhHHhhcCC
Confidence 5899999999999997655553 3355555555
No 156
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=29.51 E-value=3.3e+02 Score=22.57 Aligned_cols=94 Identities=19% Similarity=0.280 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHH--HHHHHHhCCC-------CHHHHHHHHHhhC---CCccCCH
Q psy14072 92 PLDSYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLC--LAYLIKYNQM-------NFHQAFHYLRSLR---PCIRPNL 159 (205)
Q Consensus 92 ~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~--~ayLm~~~~~-------~~~~A~~~vr~~r---p~i~pn~ 159 (205)
.+...+..+..++-+..+.+..|+|. |.||-++.+ .+.++...|+ ....+++..+..+ +...|..
T Consensus 72 g~~~~I~~ay~~l~~~~~~gd~I~lf---GFSRGA~~AR~~a~~i~~~Gll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (277)
T PF09994_consen 72 GIEARIRDAYRFLSKNYEPGDRIYLF---GFSRGAYTARAFANMIDKIGLLKPDNEERVPQAYKAYQRYRQRKPPDKPDY 148 (277)
T ss_pred chHHHHHHHHHHHHhccCCcceEEEE---ecCccHHHHHHHHHHHhhcCCcCcchhHHHHHHHHHHHhhhhccCCCccch
Confidence 46778889999988877888888855 999998776 6666766776 3456666665532 2222222
Q ss_pred -HHHHHHHHHHHHHh---CCCceEeeecccccC
Q psy14072 160 -GFFKQLINYEKRFY---AESSVEIVYNAAAQT 188 (205)
Q Consensus 160 -~f~~~L~~~e~~l~---~~~~~~~~~~~~~~~ 188 (205)
....++..|.+.+. ....++++.-.|-++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~v~I~fvGlfDTV~ 181 (277)
T PF09994_consen 149 KKKFNYMKSFKKNFSDPPREVPIRFVGLFDTVG 181 (277)
T ss_pred hhhHHHHHHHHHhhcccCCccceEEEEeeeeec
Confidence 34555666655544 455666665443333
No 157
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=29.42 E-value=58 Score=28.89 Aligned_cols=36 Identities=17% Similarity=0.432 Sum_probs=27.7
Q ss_pred EEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHhhC
Q psy14072 115 LIHCVAGVSRSASLCLAYLIKYNQMNFHQAFHYLRSLR 152 (205)
Q Consensus 115 lVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~vr~~r 152 (205)
..||.+ .+..|- ++-++|+..|+++.+|+..+....
T Consensus 55 ~~~Cf~-Cg~~Gd-~i~fv~~~~~~sf~eA~~~La~~~ 90 (415)
T TIGR01391 55 FYHCFG-CGAGGD-AIKFLMEIEGISFVEAVEELAKRA 90 (415)
T ss_pred cEEECC-CCCCCC-HHHHHHHHhCCCHHHHHHHHHHHc
Confidence 478872 334444 478889999999999999998765
No 158
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=29.27 E-value=3.9e+02 Score=23.38 Aligned_cols=76 Identities=17% Similarity=0.123 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHH--HHHHHHhCC-------CCHHHHHHHHHhhCCCccCCHH-H
Q psy14072 92 PLDSYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLC--LAYLIKYNQ-------MNFHQAFHYLRSLRPCIRPNLG-F 161 (205)
Q Consensus 92 ~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~--~ayLm~~~~-------~~~~~A~~~vr~~rp~i~pn~~-f 161 (205)
.+.+++.++..|+-+..+-|-.|+.. |.||-+-.+ .|-+++.-| .-++.|+++.+..-+...|+.. .
T Consensus 102 gL~~nI~~AYrFL~~~yepGD~Iy~F---GFSRGAf~aRVlagmir~vGlls~~~~~~~d~Aw~~y~~r~~~~dp~~~~~ 178 (423)
T COG3673 102 GLVQNIREAYRFLIFNYEPGDEIYAF---GFSRGAFSARVLAGMIRHVGLLSRKHAARIDEAWAHYRQRLSGLDPEGQKV 178 (423)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEe---eccchhHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhcCCCChhhhhh
Confidence 45678899999999999999999998 889875433 344444433 2378999999999888888764 3
Q ss_pred HHHHHHHHH
Q psy14072 162 FKQLINYEK 170 (205)
Q Consensus 162 ~~~L~~~e~ 170 (205)
.+.+.++-+
T Consensus 179 tr~rae~f~ 187 (423)
T COG3673 179 TRFRAEYFR 187 (423)
T ss_pred hHhhhHHHH
Confidence 344444433
No 159
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=29.11 E-value=63 Score=21.48 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=11.9
Q ss_pred CeEEEEcCCCCChH
Q psy14072 112 GCTLIHCVAGVSRS 125 (205)
Q Consensus 112 ~~VlVHC~~G~~RS 125 (205)
.+|++-|.+|.+-|
T Consensus 1 ~~ilivC~~G~~tS 14 (89)
T cd05566 1 KKILVACGTGVATS 14 (89)
T ss_pred CEEEEECCCCccHH
Confidence 37999999999866
No 160
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=28.66 E-value=95 Score=25.73 Aligned_cols=56 Identities=9% Similarity=-0.083 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHH------HHhCCCCHHHHHHHHHhh
Q psy14072 96 YFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAYL------IKYNQMNFHQAFHYLRSL 151 (205)
Q Consensus 96 ~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayL------m~~~~~~~~~A~~~vr~~ 151 (205)
+..-+..+|+.+.+.+.+|.|||..-......++-.+. +..+.=+.+.|-.++..-
T Consensus 110 Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~iL~~~~~~~~gi~HcFsGs~e~a~~~~d~G 171 (256)
T COG0084 110 QEEVFEAQLELAKELNLPVIIHTRDAHEDTLEILKEEGAPVGGVLHCFSGSAEEARKLLDLG 171 (256)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccccHHHHHHHHHhcCCCCCEEEEccCCCHHHHHHHHHcC
Confidence 44556677888888889999998876555544444332 112233567777766543
No 161
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=28.41 E-value=3.1e+02 Score=21.92 Aligned_cols=72 Identities=13% Similarity=0.010 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhCCC---------CHHHHHHHHHhhCC----CccCCHHHH
Q psy14072 96 YFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLIKYNQM---------NFHQAFHYLRSLRP----CIRPNLGFF 162 (205)
Q Consensus 96 ~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~---------~~~~A~~~vr~~rp----~i~pn~~f~ 162 (205)
.+..+.++|.....+|.++.+....+ +||..-.+.+|....|. +..-+..+++++.| .+.-+.++.
T Consensus 15 ~~~~a~e~i~~l~~~g~~~~~~tN~~-~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~~~~~~~v~v~G~~~~~ 93 (236)
T TIGR01460 15 PIPGAAEALNRLRAKGKPVVFLTNNS-SRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQRFEGEKVYVIGVGELR 93 (236)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEECCC-CCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHHhCCCCEEEEECCHHHH
Confidence 35677888888888888888886554 68888888888875553 23455667776543 233355666
Q ss_pred HHHHHH
Q psy14072 163 KQLINY 168 (205)
Q Consensus 163 ~~L~~~ 168 (205)
+.|+.+
T Consensus 94 ~~l~~~ 99 (236)
T TIGR01460 94 ESLEGL 99 (236)
T ss_pred HHHHHc
Confidence 666543
No 162
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=28.33 E-value=50 Score=26.91 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHH
Q psy14072 94 DSYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAYL 133 (205)
Q Consensus 94 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayL 133 (205)
..+..-+.++++.+.+-+.+|.|||.....+.--++-.+.
T Consensus 107 ~~Q~~vF~~ql~lA~~~~~pv~iH~r~a~~~~l~il~~~~ 146 (255)
T PF01026_consen 107 EVQEEVFERQLELAKELNLPVSIHCRKAHEELLEILKEYG 146 (255)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEESHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEecCCcHHHHHHHHHhcc
Confidence 4444455556666666688888888888887766666554
No 163
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=28.04 E-value=1.4e+02 Score=22.14 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=16.3
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHH
Q psy14072 109 DEGGCTLIHCVAGVSRSASLCLAYLI 134 (205)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~~ayLm 134 (205)
..+.+|+|+|..| ..+..+++.|-
T Consensus 47 ~~~~~vVv~c~~g--~~a~~aa~~L~ 70 (145)
T cd01535 47 PAAERYVLTCGSS--LLARFAAADLA 70 (145)
T ss_pred CCCCCEEEEeCCC--hHHHHHHHHHH
Confidence 4578999999986 33455555554
No 164
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=27.84 E-value=88 Score=28.65 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCCC-eEEEEcC-CCCChHHHHHHHHHH
Q psy14072 95 SYFDQVADLVQKIKDEGG-CTLIHCV-AGVSRSASLCLAYLI 134 (205)
Q Consensus 95 ~~~~~~~~fi~~~~~~~~-~VlVHC~-~G~~RS~~v~~ayLm 134 (205)
.+++-+...++.+.++|- +|+|||. .|++-++.-+..|+-
T Consensus 121 sh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~~~ 162 (501)
T TIGR01307 121 SHIDHLIALIELAAERGIEKVVLHAFTDGRDTAPKSAESYLE 162 (501)
T ss_pred chHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCchhHHHHHH
Confidence 345555556666666776 7999996 888888888877774
No 165
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=27.55 E-value=54 Score=22.99 Aligned_cols=60 Identities=12% Similarity=0.105 Sum_probs=32.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHH---HhCCCC-------HHHHHHHHHhhCCCccCCHHHHHHHHHHHHHHhCC
Q psy14072 113 CTLIHCVAGVSRSASLCLAYLI---KYNQMN-------FHQAFHYLRSLRPCIRPNLGFFKQLINYEKRFYAE 175 (205)
Q Consensus 113 ~VlVHC~~G~~RS~~v~~ayLm---~~~~~~-------~~~A~~~vr~~rp~i~pn~~f~~~L~~~e~~l~~~ 175 (205)
+||+.|.+| -|.++++--+- +.+|.+ ..+.-..+... -.+...+.....+.++++...+.
T Consensus 2 ~Ill~C~~G--aSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~-Dvill~PQv~~~~~~i~~~~~~~ 71 (99)
T cd05565 2 NVLVLCAGG--GTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDY-DLVILAPQMASYYDELKKDTDRL 71 (99)
T ss_pred EEEEECCCC--CCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCC-CEEEEcChHHHHHHHHHHHhhhc
Confidence 589999887 44555554433 335543 23322222221 24555666666677776665443
No 166
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=27.20 E-value=2.3e+02 Score=20.10 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=24.5
Q ss_pred ccCCcceEEEcCCCCCCC--CC----------CCCceEEEEeecCCC
Q psy14072 55 TNHPVTCIVNAAPELPDP--PL----------ADTIKTVKIHILDSA 89 (205)
Q Consensus 55 ~~~gI~~VInl~~~~~~~--~~----------~~~~~~~~ipi~D~~ 89 (205)
+..||+.||++...+... .+ ..|+.|.+++-....
T Consensus 10 ~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~Lg~~ 56 (122)
T PF04343_consen 10 KKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPELGPS 56 (122)
T ss_pred HHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhhcCc
Confidence 678999999988765422 11 168999998765543
No 167
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=27.11 E-value=1.3e+02 Score=29.25 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=34.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHHh----CCCCHHHHHHHHHhhC
Q psy14072 111 GGCTLIHCVAGVSRSASLCLAYLIKY----NQMNFHQAFHYLRSLR 152 (205)
Q Consensus 111 ~~~VlVHC~~G~~RS~~v~~ayLm~~----~~~~~~~A~~~vr~~r 152 (205)
+.++.||...|. +++++.-||+. .|++.++|++.+++..
T Consensus 296 ~~~~~ihlNDtH---palai~ElmR~L~d~~gl~wd~Aw~iv~~~~ 338 (794)
T TIGR02093 296 PKKVAIQLNDTH---PALAIPELMRLLIDEEGMDWDEAWDITTKTF 338 (794)
T ss_pred CcceEEEecCCc---hHHHHHHHHHHHHHhcCCCHHHHHHHHHhhe
Confidence 589999999997 68998888863 5999999999999986
No 168
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=27.07 E-value=56 Score=27.56 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=14.9
Q ss_pred HhcCCCeEEEEcCCCCChH
Q psy14072 107 IKDEGGCTLIHCVAGVSRS 125 (205)
Q Consensus 107 ~~~~~~~VlVHC~~G~~RS 125 (205)
.+...+.|.++|..|+.=|
T Consensus 230 gi~~~~~vI~yCgsG~~As 248 (285)
T COG2897 230 GIDPDKEVIVYCGSGVRAS 248 (285)
T ss_pred CCCCCCCEEEEcCCchHHH
Confidence 3567899999999997433
No 169
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=26.71 E-value=78 Score=27.32 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCCeEEEEcCCCC
Q psy14072 101 ADLVQKIKDEGGCTLIHCVAGV 122 (205)
Q Consensus 101 ~~fi~~~~~~~~~VlVHC~~G~ 122 (205)
.++-.+.+..|..||.||.+|.
T Consensus 127 ~~~g~~~I~~g~~ILThcnsg~ 148 (329)
T PRK06371 127 GEYGNELIKNGARILTHCNAGA 148 (329)
T ss_pred HHHHHHHcCCCCEEEEeCCCCc
Confidence 3444445567889999999885
No 170
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=26.59 E-value=59 Score=24.93 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=54.4
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHH-----------hCCCCHHHHHHHHHh
Q psy14072 82 KIHILDSATEPLDSYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLIK-----------YNQMNFHQAFHYLRS 150 (205)
Q Consensus 82 ~ipi~D~~~~~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~-----------~~~~~~~~A~~~vr~ 150 (205)
.+|+.|++- .++++.+-+.+......|+.++|-|.+ +=-.|-=. +..-+++.+++.+++
T Consensus 41 GiPL~DdDR---~pWL~~l~~~~~~~~~~~~~~vi~CSA-------LKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~ 110 (161)
T COG3265 41 GIPLNDDDR---WPWLEALGDAAASLAQKNKHVVIACSA-------LKRSYRDLLREANPGLRFVYLDGDFDLILERMKA 110 (161)
T ss_pred CCCCCcchh---hHHHHHHHHHHHHhhcCCCceEEecHH-------HHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHh
Confidence 467777553 457888888888877778889999954 22222211 123578888888888
Q ss_pred hCCCccCCHHHHHHHHHHHHH
Q psy14072 151 LRPCIRPNLGFFKQLINYEKR 171 (205)
Q Consensus 151 ~rp~i~pn~~f~~~L~~~e~~ 171 (205)
+....-|..-...|+..+|.-
T Consensus 111 R~gHFM~~~ll~SQfa~LE~P 131 (161)
T COG3265 111 RKGHFMPASLLDSQFATLEEP 131 (161)
T ss_pred cccCCCCHHHHHHHHHHhcCC
Confidence 877666777777788777763
No 171
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=26.33 E-value=1.1e+02 Score=20.19 Aligned_cols=14 Identities=14% Similarity=0.377 Sum_probs=11.7
Q ss_pred hcCCCeEEEEcCCC
Q psy14072 108 KDEGGCTLIHCVAG 121 (205)
Q Consensus 108 ~~~~~~VlVHC~~G 121 (205)
+..+.+|+++|..|
T Consensus 48 ~~~~~~vvl~c~~g 61 (90)
T cd01524 48 LPKDKEIIVYCAVG 61 (90)
T ss_pred cCCCCcEEEEcCCC
Confidence 45678999999987
No 172
>PRK02947 hypothetical protein; Provisional
Probab=26.06 E-value=1.4e+02 Score=24.27 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHH
Q psy14072 94 DSYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLC 129 (205)
Q Consensus 94 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~ 129 (205)
.+.++++++.+-+.+.++++|++. |.|.|+.++
T Consensus 23 ~e~i~~aa~lla~~i~~a~~I~i~---G~G~S~~vA 55 (246)
T PRK02947 23 AEAIEKAADLIADSIRNGGLIYVF---GTGHSHILA 55 (246)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---cCcHHHHHH
Confidence 456788888998888899999988 666665554
No 173
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=25.96 E-value=4.8e+02 Score=23.34 Aligned_cols=183 Identities=17% Similarity=0.193 Sum_probs=85.2
Q ss_pred HHHhhhccCCccccccCCCCCCCCCCCCCCCCceeeeCCEEEcCc-ccccc----------ccCCcceEEEcCCCCCCCC
Q psy14072 5 EIFQENVKKPWQFFSSTKNHPQISSNSSQLFEVTEVCPGLLLCGA-TMVGR----------TNHPVTCIVNAAPELPDPP 73 (205)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~lylG~~-~a~~~----------~~~gI~~VInl~~~~~~~~ 73 (205)
|-+++.+.....+++.+++|+....-.--..--++| |.-+|.. ...+. .+.|-++|.+|.....-..
T Consensus 27 E~ir~~vA~G~iVIp~N~~h~~~~p~~IG~gl~tKV--NaNIGtS~~~~d~~~E~~K~~~A~~~GADtvMDLStggdl~~ 104 (420)
T PF01964_consen 27 EFIRRGVAAGRIVIPANINHKELKPVGIGKGLRTKV--NANIGTSSDYSDIEEELEKLKIAEKAGADTVMDLSTGGDLDE 104 (420)
T ss_dssp HHHHHHHHTTSEE----TT-TT-----EETTS--EE--EEEE--------HHHHHHHHHHHHHTT-SEEEE---STTHHH
T ss_pred HHHHHHHhCceEEEecCCCCCCCCceEecCCCceEE--EeeecCCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHH
Confidence 557788888899999999997543111111112344 3445665 43332 7789999999987653211
Q ss_pred C------CCCceEEEEeecCCC----CCChHHHHHHHHHHHHHHhcCC-CeEEEEcC----------------CCCChHH
Q psy14072 74 L------ADTIKTVKIHILDSA----TEPLDSYFDQVADLVQKIKDEG-GCTLIHCV----------------AGVSRSA 126 (205)
Q Consensus 74 ~------~~~~~~~~ipi~D~~----~~~~~~~~~~~~~fi~~~~~~~-~~VlVHC~----------------~G~~RS~ 126 (205)
. ...+-.-.+|+..-. .....-..+.+.+.|++...+| --+-|||. .=+||.|
T Consensus 105 iR~~il~~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~~~ie~qa~~GVDfmtiH~git~~~~~~~~~~~R~~giVSRGG 184 (420)
T PF01964_consen 105 IRRAILENSPVPVGTVPIYQAAIRKGGSIVDMTEDDFFDVIEKQAKDGVDFMTIHCGITRETLERLKKSGRIMGIVSRGG 184 (420)
T ss_dssp HHHHHHHT-SS-EEE-HHHHHHHHTTT-GGG--HHHHHHHHHHHHHHT--EEEE-TT--GGGGGGGT--TSSS----HHH
T ss_pred HHHHHHHhCCCccccchHHHHHHHhCCChhhCCHHHHHHHHHHHHHcCCCEEEEccchhHHHHHHHhhhccccCccccch
Confidence 0 123445556664422 0011122366777777777666 46889996 1268999
Q ss_pred HHHHHHHHHhCCCC-----HHHHHHHHHhh----------CCCccC---CHHHHHHHHHH---HHHHhCCCceEeeeccc
Q psy14072 127 SLCLAYLIKYNQMN-----FHQAFHYLRSL----------RPCIRP---NLGFFKQLINY---EKRFYAESSVEIVYNAA 185 (205)
Q Consensus 127 ~v~~ayLm~~~~~~-----~~~A~~~vr~~----------rp~i~p---n~~f~~~L~~~---e~~l~~~~~~~~~~~~~ 185 (205)
++.++|+++...-+ +++-++..|+. ||.... ...++..|... -++-+..+..-+++-+
T Consensus 185 s~l~~WM~~n~~ENPly~~fD~lLeI~k~yDVtLSLGDglRPG~i~Da~D~aQi~EL~~lgeL~~rA~e~gVQvMVEGP- 263 (420)
T PF01964_consen 185 SILAAWMLHNGKENPLYEHFDRLLEIAKEYDVTLSLGDGLRPGCIADATDRAQIQELIILGELVKRAREAGVQVMVEGP- 263 (420)
T ss_dssp HHHHHHHHHHTS--HHHHTHHHHHHHHTTTT-EEEE--TT--SSGGGTT-HHHHHHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred HHHHHHHHhcCCcCcHHHhHHHHHHHHHHhCeeEecccccCCCCcCCCCcHHHHHHHHHHHHHHHHHHHCCCeEEeeCC-
Confidence 99999999876543 66666666654 454322 33455555543 3444567777777766
Q ss_pred ccCCCCc
Q psy14072 186 AQTYIPS 192 (205)
Q Consensus 186 ~~~~~p~ 192 (205)
|-+|-
T Consensus 264 --GHVPl 268 (420)
T PF01964_consen 264 --GHVPL 268 (420)
T ss_dssp --SB--G
T ss_pred --CCCCH
Confidence 55553
No 174
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=25.89 E-value=51 Score=20.94 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=10.8
Q ss_pred eEEEEcCCCCChH
Q psy14072 113 CTLIHCVAGVSRS 125 (205)
Q Consensus 113 ~VlVHC~~G~~RS 125 (205)
++++-|..|.+-|
T Consensus 1 ~il~vc~~G~~~s 13 (84)
T cd00133 1 KILVVCGSGIGSS 13 (84)
T ss_pred CEEEECCCcHhHH
Confidence 4789999998766
No 175
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=25.54 E-value=70 Score=21.08 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=12.0
Q ss_pred eEEEEcCCCCChHHH
Q psy14072 113 CTLIHCVAGVSRSAS 127 (205)
Q Consensus 113 ~VlVHC~~G~~RS~~ 127 (205)
+++|-|.+|.+-|..
T Consensus 1 kilvvC~~G~~tS~l 15 (86)
T cd05563 1 KILAVCGSGLGSSLM 15 (86)
T ss_pred CEEEECCCCccHHHH
Confidence 489999999986633
No 176
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=25.51 E-value=1.3e+02 Score=25.78 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=26.5
Q ss_pred CCCCChHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q psy14072 119 VAGVSRSASLCLAYLIKYNQMNFHQAFHYLRSL 151 (205)
Q Consensus 119 ~~G~~RS~~v~~ayLm~~~~~~~~~A~~~vr~~ 151 (205)
+-|.+|. +.=++.+++...+|-++|++.|++.
T Consensus 284 KfG~~~~-~~~~s~~IR~G~itReeal~~v~~~ 315 (343)
T TIGR03573 284 KFGFGRA-TDHASIDIRSGRITREEAIELVKEY 315 (343)
T ss_pred hcCCCcC-chHHHHHHHcCCCCHHHHHHHHHHh
Confidence 4688876 6667778888899999999999993
No 177
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=25.34 E-value=1.3e+02 Score=24.05 Aligned_cols=49 Identities=12% Similarity=0.127 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHHHHHHhc----CCCeEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHH
Q psy14072 91 EPLDSYFDQVADLVQKIKD----EGGCTLIHCVAGVSRSASLCLAYLIKYNQMNFHQAF 145 (205)
Q Consensus 91 ~~~~~~~~~~~~fi~~~~~----~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~ 145 (205)
++..+...++..++++.+. .+++|||-|+.|+-|+ +++++ .|++.++..
T Consensus 149 Es~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHggvir~---ll~~~---l~~~~~~~~ 201 (227)
T PRK14118 149 ENLKVTLERVLPFWEDQIAPALLSGKRVLVAAHGNSLRA---LAKHI---EGISDADIM 201 (227)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhcCCCeEEEEeCHHHHHH---HHHHH---hCCCHHHHh
Confidence 3456777888888876543 4688999999887664 22333 366766543
No 178
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=25.09 E-value=1.4e+02 Score=20.66 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCCH
Q psy14072 97 FDQVADLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMNF 141 (205)
Q Consensus 97 ~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~ 141 (205)
++.+.++|+...+.|.++++.-.. -+||..-.+..| ...|.+.
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNn-s~~s~~~~~~~L-~~~Gi~~ 58 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNN-SSRSREEYAKKL-KKLGIPV 58 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES--SSS-HHHHHHHH-HHTTTT-
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCC-CCCCHHHHHHHH-HhcCcCC
Confidence 466788888888888888888554 467777777777 5677653
No 179
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=24.99 E-value=72 Score=22.59 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=43.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHH--HHhCC-------CCHHHHHHHHHhhCCCccCCHHHHHHHHHHHHHHhCCC-ceEee
Q psy14072 112 GCTLIHCVAGVSRSASLCLAYL--IKYNQ-------MNFHQAFHYLRSLRPCIRPNLGFFKQLINYEKRFYAES-SVEIV 181 (205)
Q Consensus 112 ~~VlVHC~~G~~RS~~v~~ayL--m~~~~-------~~~~~A~~~vr~~rp~i~pn~~f~~~L~~~e~~l~~~~-~~~~~ 181 (205)
.++++-|.+|.|.|-.+- --- ....| ++..++-+++... -.+...|.-..++.++++...+.+ .+..+
T Consensus 2 k~IlLvC~aGmSTSlLV~-Km~~aA~~kg~~~~I~A~s~~e~~~~~~~~-DvvLlGPQv~y~~~~~~~~~~~~giPV~vI 79 (102)
T COG1440 2 KKILLVCAAGMSTSLLVT-KMKKAAESKGKDVTIEAYSETELSEYIDNA-DVVLLGPQVRYMLKQLKEAAEEKGIPVEVI 79 (102)
T ss_pred ceEEEEecCCCcHHHHHH-HHHHHHHhCCCceEEEEechhHHHHhhhcC-CEEEEChHHHHHHHHHHHHhcccCCCeEEe
Confidence 478999999999772221 100 01123 4555666665533 245566777777778888877776 66666
Q ss_pred ecc
Q psy14072 182 YNA 184 (205)
Q Consensus 182 ~~~ 184 (205)
+..
T Consensus 80 ~~~ 82 (102)
T COG1440 80 DML 82 (102)
T ss_pred CHH
Confidence 544
No 180
>PRK05434 phosphoglyceromutase; Provisional
Probab=24.96 E-value=1.1e+02 Score=28.11 Aligned_cols=40 Identities=28% Similarity=0.418 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhcCC-CeEEEEcC-CCCChHHHHHHHHHH
Q psy14072 95 SYFDQVADLVQKIKDEG-GCTLIHCV-AGVSRSASLCLAYLI 134 (205)
Q Consensus 95 ~~~~~~~~fi~~~~~~~-~~VlVHC~-~G~~RS~~v~~ayLm 134 (205)
.+++-+..+++.+.++| ++|+|||. .|.+-++.-+..|+-
T Consensus 125 sh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~i~ 166 (507)
T PRK05434 125 SHIDHLFALLELAKEEGVKKVYVHAFLDGRDTPPKSALGYLE 166 (507)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCchhHHHHHH
Confidence 34555555566666677 49999996 898888888888874
No 181
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.64 E-value=2.5e+02 Score=24.89 Aligned_cols=47 Identities=19% Similarity=0.079 Sum_probs=35.1
Q ss_pred HHHHhcCCCeEEEEcCCCCChH---HHHHHHHHHHhCCCCHHHHHHHHHhh
Q psy14072 104 VQKIKDEGGCTLIHCVAGVSRS---ASLCLAYLIKYNQMNFHQAFHYLRSL 151 (205)
Q Consensus 104 i~~~~~~~~~VlVHC~~G~~RS---~~v~~ayLm~~~~~~~~~A~~~vr~~ 151 (205)
++..++.|-+|.+.+-.|.+.+ -.+.+.++. ..+|+.+||+..+...
T Consensus 299 ~~~l~~~GV~vai~TD~~~~~~~~~l~~~m~l~~-~~gmtp~EaL~a~T~n 348 (406)
T COG1228 299 ARKLIDAGVKVAIGTDHNPGTSHGSLALEMALAV-RLGMTPEEALKAATIN 348 (406)
T ss_pred HHHHHHCCCEEEEEcCCCCCchhhHHHHHHHHHH-HcCCCHHHHHHHHHHH
Confidence 5666778999999999999884 334444444 5569999999986543
No 182
>PRK05568 flavodoxin; Provisional
Probab=24.53 E-value=1.4e+02 Score=21.58 Aligned_cols=58 Identities=9% Similarity=-0.113 Sum_probs=33.5
Q ss_pred CCCeEEEEcCCCCC-hHHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHHHH
Q psy14072 110 EGGCTLIHCVAGVS-RSASLCLAYLIKYNQMNFHQAFHYLRSLRPCIRPNLGFFKQLINYEKRF 172 (205)
Q Consensus 110 ~~~~VlVHC~~G~~-RS~~v~~ayLm~~~~~~~~~A~~~vr~~rp~i~pn~~f~~~L~~~e~~l 172 (205)
+++++.+-|..|.+ ..+.-.+.-.+...|+..-..- ++-+ -.|++.-+++..+|-+.+
T Consensus 81 ~~k~~~~f~t~G~~~~~~~~~~~~~l~~~g~~~~~~~--~~~~---~~p~~~~l~~~~~~g~~l 139 (142)
T PRK05568 81 KGKKLVLFGSYGWGDGEWMRDWVERMEGYGANLVNEG--LIVN---NTPEGEGIEKCKALGEAL 139 (142)
T ss_pred CCCEEEEEEccCCCCChHHHHHHHHHHHCCCEEeCCc--EEEe---cCCCHHHHHHHHHHHHHH
Confidence 68899999998875 3222223333455555432210 1111 247888888888887765
No 183
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=24.43 E-value=87 Score=22.65 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=12.3
Q ss_pred EEEEcCCCCChHHH
Q psy14072 114 TLIHCVAGVSRSAS 127 (205)
Q Consensus 114 VlVHC~~G~~RS~~ 127 (205)
||+-|+.+.+||+.
T Consensus 1 ILFvC~~N~cRS~m 14 (138)
T PF01451_consen 1 ILFVCTGNICRSPM 14 (138)
T ss_dssp EEEEESSSSSHHHH
T ss_pred CEEEeCCCcchHHH
Confidence 78999999999954
No 184
>PF14420 Clr5: Clr5 domain
Probab=24.35 E-value=1.8e+02 Score=17.73 Aligned_cols=33 Identities=0% Similarity=0.106 Sum_probs=23.8
Q ss_pred hCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHH
Q psy14072 136 YNQMNFHQAFHYLRSLRPCIRPNLGFFKQLINY 168 (205)
Q Consensus 136 ~~~~~~~~A~~~vr~~rp~i~pn~~f~~~L~~~ 168 (205)
..++|+++..+++++.+....-...+..+|..|
T Consensus 18 ~e~~tl~~v~~~M~~~~~F~at~rqy~~r~~~W 50 (54)
T PF14420_consen 18 DENKTLEEVMEIMKEEHGFKATKRQYKRRFKKW 50 (54)
T ss_pred hCCCcHHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 678999999999999886543344455566554
No 185
>PF05186 Dpy-30: Dpy-30 motif; InterPro: IPR007858 This motif is about 40 residues long and is probably formed of two alpha-helices. It is found in the Dpy-30 proteins, hence the motifs name. Dpy-30 from Caenorhabditis elegans is an essential component of dosage compensation machinery and loss of dpy-30 activity results in XX-specific lethality; in XO animals, Dpy-30 is required for developmental processes other than dosage compensation []. In yeast, the homologue of DPY-30, Saf19p, functions as part of the Set1 complex that is necessary for the methylation of histone H3 at lysine residue 4; Set1 is a key part of epigenetic developmental control []. There is also a human homologue of Dpy-30 []. This Dpy-30 region may be a dimerisation motif analogous that found in the cAMP-dependent protein kinase regulator, type II PKA, R subunit IPR003117 from INTERPRO.; PDB: 3G36_D.
Probab=24.19 E-value=64 Score=18.80 Aligned_cols=36 Identities=19% Similarity=0.129 Sum_probs=23.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHH
Q psy14072 130 LAYLIKYNQMNFHQAFHYLRSLRPCIRPNLGFFKQLI 166 (205)
Q Consensus 130 ~ayLm~~~~~~~~~A~~~vr~~rp~i~pn~~f~~~L~ 166 (205)
-.||...-+-.+.+|+..+-+.||. .|=..+-.+|.
T Consensus 3 r~YL~~~v~p~L~~gL~~l~~~rP~-DPi~~La~~Ll 38 (42)
T PF05186_consen 3 RQYLKETVGPVLTEGLAELAKERPE-DPIEFLAEYLL 38 (42)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHH--S-SHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHCCC-ChHHHHHHHHH
Confidence 4688877777899999999999983 45444444443
No 186
>PRK01112 phosphoglyceromutase; Provisional
Probab=24.00 E-value=2e+02 Score=23.04 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=32.3
Q ss_pred ChHHHHHHHHHHHHHHh----cCCCeEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHH
Q psy14072 92 PLDSYFDQVADLVQKIK----DEGGCTLIHCVAGVSRSASLCLAYLIKYNQMNFHQAFHY 147 (205)
Q Consensus 92 ~~~~~~~~~~~fi~~~~----~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~ 147 (205)
+..+...++..++++.+ ..++.|+|-|+.|+-|+.. +++ .+++.+++..+
T Consensus 150 S~~d~~~Rv~~~l~~~~~~~~~~~~~ilVVsHg~vir~l~---~~l---l~~~~~~~~~~ 203 (228)
T PRK01112 150 SLEDTGQRTLPYFQNRILPHLQQGKNVFVSAHGNSLRSLI---MDL---EKLSEEEVLSL 203 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCHHHHHHHH---HHH---hCCCHHHHhhc
Confidence 45666777777777542 2568899999988776522 333 36777766543
No 187
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=23.78 E-value=54 Score=28.23 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=19.9
Q ss_pred hcCCCeEEEEcCCCCChH----HHHHHHHHHHhCC
Q psy14072 108 KDEGGCTLIHCVAGVSRS----ASLCLAYLIKYNQ 138 (205)
Q Consensus 108 ~~~~~~VlVHC~~G~~RS----~~v~~ayLm~~~~ 138 (205)
+.++..||-||.+|.==+ .++..-+..+..|
T Consensus 147 l~~~~~VLThCNaGaLAt~~~GTAlgviR~a~~~g 181 (346)
T COG0182 147 LPDGDTVLTHCNAGALATVGYGTALGVIRSAHEEG 181 (346)
T ss_pred hccCCeEEeeecCCceeecCccchHHHHHHHHHCC
Confidence 356889999999884222 2455556666655
No 188
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=23.77 E-value=1.6e+02 Score=28.74 Aligned_cols=39 Identities=10% Similarity=0.137 Sum_probs=34.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHH----hCCCCHHHHHHHHHhhC
Q psy14072 111 GGCTLIHCVAGVSRSASLCLAYLIK----YNQMNFHQAFHYLRSLR 152 (205)
Q Consensus 111 ~~~VlVHC~~G~~RS~~v~~ayLm~----~~~~~~~~A~~~vr~~r 152 (205)
+.++.||...|. +++++.-||+ ..|+++++|++.+++.-
T Consensus 299 ~~~~~ihlNDtH---palai~ElmR~L~d~~gl~w~~Aw~i~~~~~ 341 (797)
T cd04300 299 PDKVAIQLNDTH---PALAIPELMRILVDEEGLDWDEAWDITTKTF 341 (797)
T ss_pred CCceEEEecCCc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHhhe
Confidence 479999999997 7899999886 37999999999999886
No 189
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=23.68 E-value=94 Score=28.86 Aligned_cols=40 Identities=18% Similarity=0.304 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhcCCC-eEEEEcC-CCCChHHHHHHHHHH
Q psy14072 95 SYFDQVADLVQKIKDEGG-CTLIHCV-AGVSRSASLCLAYLI 134 (205)
Q Consensus 95 ~~~~~~~~fi~~~~~~~~-~VlVHC~-~G~~RS~~v~~ayLm 134 (205)
.+++-+..+++.+..+|- +|+|||. .|++-.+.-+..|+-
T Consensus 142 Sh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~p~S~~~yl~ 183 (558)
T PLN02538 142 SRLDQLQLLLKGAAERGAKRIRVHVLTDGRDVPDGSSVGFVE 183 (558)
T ss_pred cHHHHHHHHHHHHHHcCCCeEEEEEEcCCCCCCcccHHHHHH
Confidence 345555555666666774 9999996 788877777777774
No 190
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=23.54 E-value=3e+02 Score=21.65 Aligned_cols=54 Identities=9% Similarity=-0.034 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCCC-----CChHHHHHHHHHHHhCCCCHHHHHHHHHh
Q psy14072 97 FDQVADLVQKIKDEGGCTLIHCVAG-----VSRSASLCLAYLIKYNQMNFHQAFHYLRS 150 (205)
Q Consensus 97 ~~~~~~fi~~~~~~~~~VlVHC~~G-----~~RS~~v~~ayLm~~~~~~~~~A~~~vr~ 150 (205)
...-..-+.+.++.|.+|++-..++ .+......+..++...|++.++|++.+..
T Consensus 222 ~~~~~~~~~~l~~~Gv~~~l~sD~~~~~~~~~~~~~~~~~~~~~~~gl~~~~al~~~T~ 280 (304)
T PF13147_consen 222 LREDRAALRELLEAGVPVALGSDHAPSSTEGSGDLLHEAMRLAVRAGLSPEEALRAATS 280 (304)
T ss_dssp THHHHHHHHHHHHTTSSEEEEE-BBTTTTTCTTTHHHHHHHHHHHTSSTHHHHHHHHTH
T ss_pred chhhhHHHHHHHhCCCeEEEEcCCcccccccccccchhhhhHHhhcCCCHHHHHHHHHH
Confidence 3555566667777899999988776 44555666666777799999999987643
No 191
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=23.52 E-value=1.5e+02 Score=23.64 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=32.3
Q ss_pred ChHHHHHHHHHHHHHHhc----CCCeEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHH
Q psy14072 92 PLDSYFDQVADLVQKIKD----EGGCTLIHCVAGVSRSASLCLAYLIKYNQMNFHQAF 145 (205)
Q Consensus 92 ~~~~~~~~~~~fi~~~~~----~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~ 145 (205)
+..+...++..++++.+. .+++|+|-|+.|+-|+ +++|+ .|++.++..
T Consensus 151 s~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~vir~---ll~~~---~~~~~~~~~ 202 (228)
T PRK14116 151 NLKVTLERVIPFWEDHIAPDLLDGKNVIIAAHGNSLRA---LTKYI---ENISDEDIM 202 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcChHHHHH---HHHHH---hCCCHHHHH
Confidence 456677888888877542 4789999999987765 33333 367766543
No 192
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=23.33 E-value=1.5e+02 Score=28.85 Aligned_cols=39 Identities=10% Similarity=0.183 Sum_probs=33.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHH----hCCCCHHHHHHHHHhhC
Q psy14072 111 GGCTLIHCVAGVSRSASLCLAYLIK----YNQMNFHQAFHYLRSLR 152 (205)
Q Consensus 111 ~~~VlVHC~~G~~RS~~v~~ayLm~----~~~~~~~~A~~~vr~~r 152 (205)
+.++.||...|. +++++.=||+ ..|+++++|++.+++..
T Consensus 301 ~~~~~ihlNDtH---palai~ElmR~L~d~~gl~wd~Aw~iv~~~~ 343 (798)
T PRK14985 301 PDYEVIQLNDTH---PTIAIPELLRVLLDEHQLSWDDAWAITSKTF 343 (798)
T ss_pred CCCcEEEecCCc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHhe
Confidence 478899999997 6888888886 26999999999999986
No 193
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=23.30 E-value=2e+02 Score=22.37 Aligned_cols=35 Identities=31% Similarity=0.622 Sum_probs=23.3
Q ss_pred HHHHHHhcCCCeEEEEcC--CCCChHHHHHHHHHHHhC
Q psy14072 102 DLVQKIKDEGGCTLIHCV--AGVSRSASLCLAYLIKYN 137 (205)
Q Consensus 102 ~fi~~~~~~~~~VlVHC~--~G~~RS~~v~~ayLm~~~ 137 (205)
+.++...+.|+.|+||-- .|+++- -.++-||-...
T Consensus 35 ~~v~~~~~~gK~vfVHiDli~Gl~~D-~~~i~~L~~~~ 71 (175)
T PF04309_consen 35 DIVKRLKAAGKKVFVHIDLIEGLSRD-EAGIEYLKEYG 71 (175)
T ss_dssp HHHHHHHHTT-EEEEECCGEETB-SS-HHHHHHHHHTT
T ss_pred HHHHHHHHcCCEEEEEehhcCCCCCC-HHHHHHHHHcC
Confidence 344555668999999987 788877 55667776544
No 194
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=23.25 E-value=2.4e+02 Score=20.49 Aligned_cols=57 Identities=18% Similarity=0.259 Sum_probs=36.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHHh-CCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHHHHhCC
Q psy14072 110 EGGCTLIHCVAGVSRSASLCLAYLIKY-NQMNFHQAFHYLRSLRPCIRPNLGFFKQLINYEKRFYAE 175 (205)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~v~~ayLm~~-~~~~~~~A~~~vr~~rp~i~pn~~f~~~L~~~e~~l~~~ 175 (205)
+|+.++|....|.|+|.+...+.+... .+... .--.+.|......+....-..+...
T Consensus 13 ~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~---------~~lii~P~~~l~~q~~~~~~~~~~~ 70 (169)
T PF00270_consen 13 SGKNVLISAPTGSGKTLAYILPALNRLQEGKDA---------RVLIIVPTRALAEQQFERLRKFFSN 70 (169)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSS---------EEEEEESSHHHHHHHHHHHHHHTTT
T ss_pred cCCCEEEECCCCCccHHHHHHHHHhhhccCCCc---------eEEEEeecccccccccccccccccc
Confidence 678899999999999977666554322 11100 1125678888777777554555444
No 195
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=22.99 E-value=1.2e+02 Score=27.64 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhcCC-CeEEEEcC-CCCChHHHHHHHHHH
Q psy14072 94 DSYFDQVADLVQKIKDEG-GCTLIHCV-AGVSRSASLCLAYLI 134 (205)
Q Consensus 94 ~~~~~~~~~fi~~~~~~~-~~VlVHC~-~G~~RS~~v~~ayLm 134 (205)
-.+.+-+...++.+..+| +.|++||. .|..-.+.-+..||-
T Consensus 123 HSh~~Hl~ali~~a~k~g~~kV~~H~f~DGRD~~P~s~~~~le 165 (509)
T COG0696 123 HSHIDHLLALIELAAKNGMKKVYLHAFLDGRDTAPRSALQYLE 165 (509)
T ss_pred cchHHHHHHHHHHHHhcCCcEEEEEEecCCCCCCchhHHHHHH
Confidence 345566666777777777 69999996 788877777777764
No 196
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=22.92 E-value=1e+02 Score=29.95 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=29.1
Q ss_pred CeEEEEcCCCCChHHHHHHHH----HHHhCCCCHHHHHHHHHhhC
Q psy14072 112 GCTLIHCVAGVSRSASLCLAY----LIKYNQMNFHQAFHYLRSLR 152 (205)
Q Consensus 112 ~~VlVHC~~G~~RS~~v~~ay----Lm~~~~~~~~~A~~~vr~~r 152 (205)
.+..|||..|. ++++..- +|...|+++++|+..++..-
T Consensus 248 ~pdViH~ND~H---aal~~lE~~R~ll~~~g~~~~~A~e~vr~~t 289 (778)
T cd04299 248 KPTVYHMNEGH---AAFLGLERIRELMAEGGLSFDEALEAVRAST 289 (778)
T ss_pred CCeEEEeCCCc---HHHHHHHHHHHHHHHcCCCHHHHHHhhCCeE
Confidence 68999999997 4666663 33445899999999887654
No 197
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=22.82 E-value=1.3e+02 Score=24.60 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=34.0
Q ss_pred ccCCcceEEEcCCCCCCCCC-CCCceEEEEeecCCCCCC-------------------hHHHHHHHHHHHHHHhcCCCeE
Q psy14072 55 TNHPVTCIVNAAPELPDPPL-ADTIKTVKIHILDSATEP-------------------LDSYFDQVADLVQKIKDEGGCT 114 (205)
Q Consensus 55 ~~~gI~~VInl~~~~~~~~~-~~~~~~~~ipi~D~~~~~-------------------~~~~~~~~~~fi~~~~~~~~~V 114 (205)
++.||.-+.+.-....-... ..++..+.|+=.|....+ ....++++++++.+. ....-+
T Consensus 66 ~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~~~~-~~~~l~ 144 (241)
T PF03102_consen 66 KELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLEEIERAVEVLREA-GNEDLV 144 (241)
T ss_dssp HHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHHHHHHHHHHHHH-CT--EE
T ss_pred HHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHHHHHHHHHHHHhc-CCCCEE
Confidence 67788777776543211111 124445555444433222 245567788888553 467889
Q ss_pred EEEcCCCCC
Q psy14072 115 LIHCVAGVS 123 (205)
Q Consensus 115 lVHC~~G~~ 123 (205)
|.||.++.-
T Consensus 145 llHC~s~YP 153 (241)
T PF03102_consen 145 LLHCVSSYP 153 (241)
T ss_dssp EEEE-SSSS
T ss_pred EEecCCCCC
Confidence 999999864
No 198
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
Probab=22.64 E-value=1.1e+02 Score=26.38 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=27.3
Q ss_pred CCeE--EEEcCCCCChHHHHHHHHHHHh-----CCCCHHHHHHHHHhhCC
Q psy14072 111 GGCT--LIHCVAGVSRSASLCLAYLIKY-----NQMNFHQAFHYLRSLRP 153 (205)
Q Consensus 111 ~~~V--lVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~vr~~rp 153 (205)
+.++ ++++.+|.|- |+++++.|... ..++.++++++.+...+
T Consensus 37 ~~~i~~~FDliaGTSt-GgiiA~~la~~~~~~~p~~~~~e~~~~y~~~~~ 85 (349)
T cd07214 37 DARIADYFDVIAGTST-GGLITAMLTAPNENKRPLFAAKDIVQFYLENGP 85 (349)
T ss_pred CCCHhHhCCEEeeCCH-HHHHHHHHhcCCCCCCCccCHHHHHHHHHHhhH
Confidence 3455 7999999884 45555555432 23778898887666544
No 199
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=22.56 E-value=1.5e+02 Score=24.52 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhC
Q psy14072 129 CLAYLIKYNQMNFHQAFHYLRSLR 152 (205)
Q Consensus 129 ~~ayLm~~~~~~~~~A~~~vr~~r 152 (205)
++..+|+..|++.++|++.++...
T Consensus 231 ~V~vl~~~~g~s~~eA~~~~~~~~ 254 (303)
T cd00687 231 LVKVLAEEHGLSLEEAISVVRDMH 254 (303)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Confidence 445678889999999999998773
No 200
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=22.53 E-value=5.6e+02 Score=22.92 Aligned_cols=181 Identities=14% Similarity=0.148 Sum_probs=101.6
Q ss_pred HHHhhhccCCccccccCCCCCCCCCCCCCCCC-ceeeeCCEEEcCc-ccccc----------ccCCcceEEEcCCCCCCC
Q psy14072 5 EIFQENVKKPWQFFSSTKNHPQISSNSSQLFE-VTEVCPGLLLCGA-TMVGR----------TNHPVTCIVNAAPELPDP 72 (205)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~I~~~lylG~~-~a~~~----------~~~gI~~VInl~~~~~~~ 72 (205)
|-++..+.....+++.+.+|+.... ..-..+ -++| |.-+|.- ...+. .++|-.+|.+|.....-.
T Consensus 28 e~ir~~vA~G~iVIp~N~~~~~~~p-~~IG~glrtKV--NaNIGtS~~~~d~~~E~~K~~~A~~~GADtiMDLStGgdl~ 104 (423)
T TIGR00190 28 EFLRREVASGRIVIPSNINREESEP-MGIGRNLRTKV--NANIGTSADTSDIEEEVEKALIAIKYGADTVMDLSTGGDLD 104 (423)
T ss_pred HHHHHHhhCceEEeecCCCCCCCCc-eEecCCceeEE--EeeecCCCCCCCHHHHHHHHHHHHHcCCCeEeeccCCCCHH
Confidence 4567777888888999999876432 221111 2333 3445655 44443 678999999998765211
Q ss_pred CCC------CCceEEEEeecCCCCC---ChH-HHHHHHHHHHHHHhcCC-CeEEEEcC-----------C-----CCChH
Q psy14072 73 PLA------DTIKTVKIHILDSATE---PLD-SYFDQVADLVQKIKDEG-GCTLIHCV-----------A-----GVSRS 125 (205)
Q Consensus 73 ~~~------~~~~~~~ipi~D~~~~---~~~-~~~~~~~~fi~~~~~~~-~~VlVHC~-----------~-----G~~RS 125 (205)
... ..+-.=.+|+.+-... ++. -..+.+++.|++..++| --+-|||. . =+||-
T Consensus 105 ~iR~~il~~s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~~~R~~giVSRG 184 (423)
T TIGR00190 105 EIRKAILDAVPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAIEKQAKDGVDFMTIHAGVLLEYVERLKRSGRITGIVSRG 184 (423)
T ss_pred HHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhCCCccCeecCc
Confidence 100 0111122333221000 100 11256667777776666 46788995 1 16899
Q ss_pred HHHHHHHHHHhCCCC-----HHHHHHHHHhh----------CCCccCC---HHHHHHHHHH---HHHHhCCCceEeeecc
Q psy14072 126 ASLCLAYLIKYNQMN-----FHQAFHYLRSL----------RPCIRPN---LGFFKQLINY---EKRFYAESSVEIVYNA 184 (205)
Q Consensus 126 ~~v~~ayLm~~~~~~-----~~~A~~~vr~~----------rp~i~pn---~~f~~~L~~~---e~~l~~~~~~~~~~~~ 184 (205)
|++.++|++....-+ +++-++..++. ||..... ..++..|..+ -++-..++..-+++-+
T Consensus 185 Gs~~~~WM~~~~~ENPlye~fD~lLeI~~~yDVtlSLGDglRPG~i~DA~D~aQi~El~~lgeL~~rA~e~gVQvMVEGP 264 (423)
T TIGR00190 185 GAILAAWMLHHHKENPLYKNFDYILEIAKEYDVTLSLGDGLRPGCIADATDRAQISELITLGELVERAREADVQCMVEGP 264 (423)
T ss_pred HHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 999999999875543 55566666654 5643332 2355555433 3444567777777766
Q ss_pred cccCCCC
Q psy14072 185 AAQTYIP 191 (205)
Q Consensus 185 ~~~~~~p 191 (205)
|-+|
T Consensus 265 ---GHvP 268 (423)
T TIGR00190 265 ---GHVP 268 (423)
T ss_pred ---CCCc
Confidence 6555
No 201
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=22.53 E-value=1e+02 Score=27.39 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCCCeEEEEcCC-CCChHHHHH--HH------HHHHhCCCCHHHHHHHHH
Q psy14072 98 DQVADLVQKIKDEGGCTLIHCVA-GVSRSASLC--LA------YLIKYNQMNFHQAFHYLR 149 (205)
Q Consensus 98 ~~~~~fi~~~~~~~~~VlVHC~~-G~~RS~~v~--~a------yLm~~~~~~~~~A~~~vr 149 (205)
.++.+..+-+...|-++.+||.. +-+.+.+.+ ++ .+..+-||.+++.+..|.
T Consensus 335 t~a~kia~lA~~~Gi~~~~g~~~~es~I~~aa~~Hlaaa~~~~~~l~kpg~g~d~~~~~~~ 395 (408)
T TIGR01502 335 NNIARAIMYCKANGMGAYVGGTCNETNRSAEVTTHVGMATGARQVLAKPGMGVDEGMMIVK 395 (408)
T ss_pred HHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEecCCCCcchhHHHHH
Confidence 44455555566779999999875 444443222 22 222346777777766554
No 202
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=22.26 E-value=1.1e+02 Score=26.05 Aligned_cols=16 Identities=38% Similarity=0.789 Sum_probs=12.1
Q ss_pred HhcCCCeEEEEcCCCC
Q psy14072 107 IKDEGGCTLIHCVAGV 122 (205)
Q Consensus 107 ~~~~~~~VlVHC~~G~ 122 (205)
.+..|..||.||.+|.
T Consensus 115 ~I~~g~~ILT~~~Sg~ 130 (303)
T TIGR00524 115 LIKDGDTVLTHCNAGA 130 (303)
T ss_pred HccCCCEEEEecCCcc
Confidence 3456789999998863
No 203
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=22.04 E-value=2.1e+02 Score=22.61 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=20.7
Q ss_pred cCCCeEEEEcCCCCChH-HHHHHHHHHHhCC
Q psy14072 109 DEGGCTLIHCVAGVSRS-ASLCLAYLIKYNQ 138 (205)
Q Consensus 109 ~~~~~VlVHC~~G~~RS-~~v~~ayLm~~~~ 138 (205)
...+.|.|+|..|.|.| +++..|+-....|
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G 50 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHG 50 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCC
Confidence 46789999999999977 4444444444343
No 204
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=22.01 E-value=1.7e+02 Score=24.76 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCC-h-------HHHHHHHHHHHhC--------CCCHHHHHHHHHhhC
Q psy14072 98 DQVADLVQKIKDEGGCTLIHCVAGVS-R-------SASLCLAYLIKYN--------QMNFHQAFHYLRSLR 152 (205)
Q Consensus 98 ~~~~~fi~~~~~~~~~VlVHC~~G~~-R-------S~~v~~ayLm~~~--------~~~~~~A~~~vr~~r 152 (205)
..+..+++.+...|.+|+|||...-- . .....+..|.... .++-.++++.+++.+
T Consensus 113 ~~l~~~~e~~~~~g~~V~vHaE~~~l~~~~~~~e~~~~~~~~~lA~~~p~~~v~i~Hvst~~~~~~i~~ak 183 (335)
T cd01294 113 EKIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAKFIPVLEPLAQRFPKLKIVLEHITTADAVEYVKSCN 183 (335)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCcccccchhhHHHHHHHHHHHHHHcCCCeEEEecccHHHHHHHHHhCC
Confidence 45555666666679999999976421 0 0112344444432 367889999998766
No 205
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=21.98 E-value=4.8e+02 Score=21.93 Aligned_cols=45 Identities=11% Similarity=0.059 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHH---HHHHHHhCCCCHH
Q psy14072 95 SYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLC---LAYLIKYNQMNFH 142 (205)
Q Consensus 95 ~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~---~ayLm~~~~~~~~ 142 (205)
+.+.++++.+-+.+.+|++|++. |.|-|+.++ ++-+....|.+.+
T Consensus 41 ~~I~~av~~~~~~l~~gGrl~~~---G~G~Sg~l~~~DA~e~~~t~g~~~~ 88 (291)
T TIGR00274 41 PDIAAAVEQIVQAFQQGGRLIYI---GAGTSGRLGVLDASECPPTFGVSPE 88 (291)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEE---CCcHHHHHHHHHHHHhhhhcCCCHH
Confidence 34566666667777778887766 555566543 2224444565543
No 206
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=21.95 E-value=1.6e+02 Score=18.38 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=19.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhC
Q psy14072 128 LCLAYLIKYNQMNFHQAFHYLRSLR 152 (205)
Q Consensus 128 v~~ayLm~~~~~~~~~A~~~vr~~r 152 (205)
.++--+.++.|+|.++|++.+++..
T Consensus 6 ~~Ie~~A~~~~~s~~ea~~~~~~~~ 30 (62)
T PF12668_consen 6 FCIEEFAKKLNISGEEAYNYFKRSG 30 (62)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHcC
Confidence 3555566789999999999998654
No 207
>KOG1530|consensus
Probab=21.78 E-value=99 Score=23.05 Aligned_cols=75 Identities=13% Similarity=0.109 Sum_probs=36.6
Q ss_pred cccccccCCcceEEEcCCCCCCCCCCCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcC-CCeEEEEcCCCCChHHH
Q psy14072 50 TMVGRTNHPVTCIVNAAPELPDPPLADTIKTVKIHILDSATEPLDSYFDQVADLVQKIKDE-GGCTLIHCVAGVSRSAS 127 (205)
Q Consensus 50 ~a~~~~~~gI~~VInl~~~~~~~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~fi~~~~~~-~~~VlVHC~~G~~RS~~ 127 (205)
.+.+....+=...|+++...+-.... --.-.+||..-.+...... =.++..-+...... ...++++|.+|. ||..
T Consensus 29 qvk~L~~~~~~~llDVRepeEfk~gh-~~~siNiPy~~~~~~~~l~-~~eF~kqvg~~kp~~d~eiIf~C~SG~-Rs~~ 104 (136)
T KOG1530|consen 29 QVKNLLQHPDVVLLDVREPEEFKQGH-IPASINIPYMSRPGAGALK-NPEFLKQVGSSKPPHDKEIIFGCASGV-RSLK 104 (136)
T ss_pred HHHHHhcCCCEEEEeecCHHHhhccC-CcceEeccccccccccccC-CHHHHHHhcccCCCCCCcEEEEeccCc-chhH
Confidence 33444333436778887654322111 2344566664333221111 02233333333333 458999999995 7633
No 208
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=21.76 E-value=2.5e+02 Score=22.29 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCCCCC
Q psy14072 97 FDQVADLVQKIKDEGGCTLIHCVAGVS 123 (205)
Q Consensus 97 ~~~~~~fi~~~~~~~~~VlVHC~~G~~ 123 (205)
+.++.+.+..+...|.++.+||..|-+
T Consensus 182 i~~~~~i~~~a~~~gi~~~~~~~~~s~ 208 (229)
T cd00308 182 LTESRRAADLAEAFGIRVMVHGTLESS 208 (229)
T ss_pred HHHHHHHHHHHHHcCCEEeecCCCCCH
Confidence 355566666666789999999976543
No 209
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=21.73 E-value=96 Score=27.15 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhCCCCHHH
Q psy14072 101 ADLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLIKYNQMNFHQ 143 (205)
Q Consensus 101 ~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~ 143 (205)
.+=|-++++.|.-|.|. |+.==+++.++.+|+..||+.++
T Consensus 150 a~pI~~AL~~GADIVI~---GR~~D~Al~~a~~~~~~GW~~~d 189 (362)
T PF07287_consen 150 AEPIVEALEAGADIVIT---GRVADPALFAAPAIHEFGWSEDD 189 (362)
T ss_pred hHHHHHHHHcCCCEEEe---CcccchHHHHhHHHHHcCCCccc
Confidence 34455667778777776 33333899999999999998554
No 210
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=21.62 E-value=2e+02 Score=17.38 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=20.7
Q ss_pred CCCChHHHHHHHHHHHhCCCCHHHHHHHHHhhC
Q psy14072 120 AGVSRSASLCLAYLIKYNQMNFHQAFHYLRSLR 152 (205)
Q Consensus 120 ~G~~RS~~v~~ayLm~~~~~~~~~A~~~vr~~r 152 (205)
.|.+|. ++.++.=+-..|.+++.--..|+..|
T Consensus 17 tgLd~e-tL~ici~L~e~GVnPeaLA~vI~elr 48 (48)
T PF12554_consen 17 TGLDRE-TLSICIELCENGVNPEALAAVIKELR 48 (48)
T ss_pred CCCCHH-HHHHHHHHHHCCCCHHHHHHHHHHhC
Confidence 388998 55555555589999874444555443
No 211
>PF05562 WCOR413: Cold acclimation protein WCOR413; InterPro: IPR008892 This family consists of several WCOR413-like plant cold acclimation proteins.
Probab=21.56 E-value=2e+02 Score=22.62 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=24.1
Q ss_pred HhcCCCeEEEEcCCCCChH-----HHHHHHHHHHhCC
Q psy14072 107 IKDEGGCTLIHCVAGVSRS-----ASLCLAYLIKYNQ 138 (205)
Q Consensus 107 ~~~~~~~VlVHC~~G~~RS-----~~v~~ayLm~~~~ 138 (205)
+.+.+..+..++..|.+++ ++++++|||...+
T Consensus 27 a~kl~~~a~~~~~~~~~t~~lqWias~aAi~Llildr 63 (187)
T PF05562_consen 27 AKKLASHAICLGSLGFGTSFLQWIASIAAIYLLILDR 63 (187)
T ss_pred HHhhhcceeeeccccccHHHHHHHHHHHHHHHHhccC
Confidence 3444566666678888887 7889999998877
No 212
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=21.28 E-value=1.8e+02 Score=26.77 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=33.9
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcCCCeEEEEcCCCC-ChHHHHHHHHHHHhCCC
Q psy14072 87 DSATEPLDSYFDQVADLVQKIKDEGGCTLIHCVAGV-SRSASLCLAYLIKYNQM 139 (205)
Q Consensus 87 D~~~~~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~-~RS~~v~~ayLm~~~~~ 139 (205)
+...+...+.++++++.|.+++.++.+|+|.+..-. |=++++++...++..|.
T Consensus 30 ~l~~p~~l~~~~~a~~~i~~~i~~~~~I~I~gh~D~DGi~S~~~L~~~L~~~g~ 83 (539)
T TIGR00644 30 DLPDPFLLKDMEKAVERIIEAIENNEKILIFGDYDVDGITSTAILVEFLKDLGV 83 (539)
T ss_pred hcCChhhcCCHHHHHHHHHHHHhcCCeEEEEEccCCCcHHHHHHHHHHHHHCCC
Confidence 333444456678888889888988999999876322 23445555555555543
No 213
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=20.91 E-value=1.3e+02 Score=23.23 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=26.2
Q ss_pred CChHHHHHHHHHHHHHHhcCCC--eEEEEcCCCCCh
Q psy14072 91 EPLDSYFDQVADLVQKIKDEGG--CTLIHCVAGVSR 124 (205)
Q Consensus 91 ~~~~~~~~~~~~fi~~~~~~~~--~VlVHC~~G~~R 124 (205)
++..+...++..++.+...... +|+|-|+.|.-|
T Consensus 123 Es~~~~~~R~~~~~~~~~~~~~~~~vlvVsHg~~ir 158 (208)
T COG0406 123 ESLADVSKRVVAALAELLRSPPGNNVLVVSHGGVIR 158 (208)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCeEEEEEChHHHH
Confidence 4556777888888888776533 699999999877
No 214
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=20.88 E-value=1.7e+02 Score=25.28 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=26.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHhhC
Q psy14072 113 CTLIHCVAGVSRSASLCLAYLIKYNQMNFHQAFHYLRSLR 152 (205)
Q Consensus 113 ~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~vr~~r 152 (205)
..++...+|.| +|+++++++ ..|++.++..++.+...
T Consensus 39 ~d~FDlIaGTS-tGgIIAa~l--a~g~s~~ei~~~y~~~~ 75 (344)
T cd07217 39 GDYFDFVGGTS-TGSIIAACI--ALGMSVTDLLSFYTLNG 75 (344)
T ss_pred cccccEEEEec-HHHHHHHHH--HcCCCHHHHHHHHHhhh
Confidence 45678889988 556666665 35899999999886553
No 215
>PRK13937 phosphoheptose isomerase; Provisional
Probab=20.87 E-value=4e+02 Score=20.52 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHH
Q psy14072 94 DSYFDQVADLVQKIKDEGGCTLIHCVAGVSRSASLC 129 (205)
Q Consensus 94 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~ 129 (205)
.+.+.++++-+-+.+.++++|++. |.|-|+.++
T Consensus 21 ~~~l~~aa~~i~~~l~~a~rI~i~---G~G~S~~~A 53 (188)
T PRK13937 21 LEAIAKVAEALIEALANGGKILLC---GNGGSAADA 53 (188)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---eCcHhHHHH
Confidence 466777888888888889998887 666665544
No 216
>PRK14986 glycogen phosphorylase; Provisional
Probab=20.83 E-value=1.8e+02 Score=28.38 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=33.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHHh----CCCCHHHHHHHHHhhC
Q psy14072 111 GGCTLIHCVAGVSRSASLCLAYLIKY----NQMNFHQAFHYLRSLR 152 (205)
Q Consensus 111 ~~~VlVHC~~G~~RS~~v~~ayLm~~----~~~~~~~A~~~vr~~r 152 (205)
+.++.||-..|. +++++.-||+. .|+++++|++.+++..
T Consensus 312 ~~~v~ihlNDtH---pa~~i~ElmR~L~d~~gl~~~eA~~iv~~~~ 354 (815)
T PRK14986 312 ADKIAIHLNDTH---PVLSIPELMRLLIDEHKFSWDDAFEVCCQVF 354 (815)
T ss_pred CcccEEEecCCc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHhhE
Confidence 578999999997 68998888863 5999999999999986
No 217
>PF08974 DUF1877: Domain of unknown function (DUF1877); InterPro: IPR015068 This entry represents a family of hypothetical proteins.; PDB: 1RYL_B.
Probab=20.75 E-value=1.5e+02 Score=22.51 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHHHHhcCCCeEEEE
Q psy14072 92 PLDSYFDQVADLVQKIKDEGGCTLIH 117 (205)
Q Consensus 92 ~~~~~~~~~~~fi~~~~~~~~~VlVH 117 (205)
.+..+|.++.+|..++.++|..|+|.
T Consensus 141 ~l~~~f~~L~~Fy~~AA~~~~~Vl~~ 166 (167)
T PF08974_consen 141 YLWDYFEELKEFYQKAAENGDAVLFY 166 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-EEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 36688999999999999999999985
No 218
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=20.74 E-value=2.7e+02 Score=21.97 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhCC
Q psy14072 100 VADLVQKIKDEGGCTLIHCVAGVSRSASLCLAYLIKYNQ 138 (205)
Q Consensus 100 ~~~fi~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~ 138 (205)
+.+++.+....+.+|+|-|-.|.+=.=.+++|-+....+
T Consensus 34 va~~i~~~~~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~ 72 (205)
T TIGR00197 34 VAQAVLQAFPLAGHVIIFCGPGNNGGDGFVVARHLKGFG 72 (205)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHhCC
Confidence 345555544557899999999987554444444443333
No 219
>PLN02150 terpene synthase/cyclase family protein
Probab=20.54 E-value=1.2e+02 Score=20.92 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhh
Q psy14072 126 ASLCLAYLIKYNQMNFHQAFHYLRSL 151 (205)
Q Consensus 126 ~~v~~ayLm~~~~~~~~~A~~~vr~~ 151 (205)
++.+-+| |+.+|.|.++|...++..
T Consensus 7 aSsIeCY-Mke~g~seeeA~~~i~~l 31 (96)
T PLN02150 7 ANGVNCY-MKQHGVTKEEAVSELKKM 31 (96)
T ss_pred hHHHHHH-hccCCCCHHHHHHHHHHH
Confidence 4445555 457799999999988876
No 220
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=20.40 E-value=98 Score=21.42 Aligned_cols=16 Identities=31% Similarity=0.293 Sum_probs=13.5
Q ss_pred CeEEEEcCCCCChHHH
Q psy14072 112 GCTLIHCVAGVSRSAS 127 (205)
Q Consensus 112 ~~VlVHC~~G~~RS~~ 127 (205)
.+||+-|-+|++-|-.
T Consensus 2 ~KIL~aCG~GvgSS~~ 17 (93)
T COG3414 2 IKILAACGNGVGSSTM 17 (93)
T ss_pred cEEEEECCCCccHHHH
Confidence 4799999999998844
No 221
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=20.33 E-value=1.3e+02 Score=24.45 Aligned_cols=31 Identities=26% Similarity=0.421 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCChHHHHH--HHHHHHhCCCC
Q psy14072 110 EGGCTLIHCVAGVSRSASLC--LAYLIKYNQMN 140 (205)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~v~--~ayLm~~~~~~ 140 (205)
.+++++|-..+|-|-|.+++ ++||+...+.+
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~ 44 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVP 44 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSST
T ss_pred CCCCEEEEeCCCCCchHHHHHHHHHhhccccCC
Confidence 57999999999999998777 57888776543
No 222
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=20.22 E-value=1.1e+02 Score=22.02 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=16.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHH
Q psy14072 112 GCTLIHCVAGVSRSASLCLAYL 133 (205)
Q Consensus 112 ~~VlVHC~~G~~RS~~v~~ayL 133 (205)
.+||+-|.....||+ ++-+++
T Consensus 1 ~~vlfvC~~N~cRS~-mAEa~~ 21 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQ-MAEGFA 21 (126)
T ss_pred CeEEEEcCCcHHHHH-HHHHHH
Confidence 479999999999995 444444
No 223
>COG0358 DnaG DNA primase (bacterial type) [DNA replication, recombination, and repair]
Probab=20.08 E-value=1.6e+02 Score=27.27 Aligned_cols=41 Identities=17% Similarity=0.348 Sum_probs=33.0
Q ss_pred CCCeEEEEcC-CCCChHHHHHHHHHHHhCCCCHHHHHHHHHhhCC
Q psy14072 110 EGGCTLIHCV-AGVSRSASLCLAYLIKYNQMNFHQAFHYLRSLRP 153 (205)
Q Consensus 110 ~~~~VlVHC~-~G~~RS~~v~~ayLm~~~~~~~~~A~~~vr~~rp 153 (205)
...+++.||. .|.+.. ++.++|...|.++.+|...+-.+-.
T Consensus 50 ~~~k~~yhCFGCg~~Gd---~i~Fl~~~~g~sf~eav~~La~~~g 91 (568)
T COG0358 50 SPEKGFYHCFGCGAGGD---AIKFLMELLGLSFDEAVLQLAGRAG 91 (568)
T ss_pred eCCCCeEecCCCCCCcc---HHHHHHHhcCCCHHHHHHHHHHHhC
Confidence 4678899997 555433 6889999999999999999888753
No 224
>PRK05667 dnaG DNA primase; Validated
Probab=20.06 E-value=1.2e+02 Score=28.26 Aligned_cols=37 Identities=19% Similarity=0.484 Sum_probs=28.3
Q ss_pred EEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHhhCC
Q psy14072 115 LIHCVAGVSRSASLCLAYLIKYNQMNFHQAFHYLRSLRP 153 (205)
Q Consensus 115 lVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~vr~~rp 153 (205)
..||.+ .+.+|- ++-++|...|+++.+|+..+.....
T Consensus 57 ~~~CF~-Cg~~Gd-~i~fv~~~~~~sf~eAv~~La~~~g 93 (580)
T PRK05667 57 FYHCFG-CGAGGD-VIKFLMEYEGLSFVEAVEELADRAG 93 (580)
T ss_pred eEEECC-CCCCCC-HHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 589873 344443 5788899999999999999987764
No 225
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=20.01 E-value=2.5e+02 Score=20.35 Aligned_cols=32 Identities=13% Similarity=0.311 Sum_probs=24.3
Q ss_pred HHHHHHHHhhCCCccCCHHHHHHHHHHHHHHhC
Q psy14072 142 HQAFHYLRSLRPCIRPNLGFFKQLINYEKRFYA 174 (205)
Q Consensus 142 ~~A~~~vr~~rp~i~pn~~f~~~L~~~e~~l~~ 174 (205)
-+.++++.+++| |.....|...|.+|-..+..
T Consensus 72 l~~vd~fs~~Y~-I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 72 LKLVDFFSRKYP-IPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhcC
Confidence 344567777888 78889999999999775543
Done!