Query psy14075
Match_columns 414
No_of_seqs 419 out of 1163
Neff 10.6
Searched_HMMs 29240
Date Fri Aug 16 18:55:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14075.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14075hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 1.5E-41 5.1E-46 324.7 32.3 351 17-372 50-435 (451)
2 3o7q_A L-fucose-proton symport 100.0 1.6E-39 5.5E-44 309.5 34.6 342 17-365 48-427 (438)
3 2gfp_A EMRD, multidrug resista 100.0 1.1E-37 3.7E-42 290.8 18.1 334 17-357 22-363 (375)
4 4aps_A DI-OR tripeptide H+ sym 100.0 7.4E-36 2.5E-40 288.5 30.0 345 25-374 49-475 (491)
5 4gc0_A D-xylose-proton symport 100.0 3.3E-33 1.1E-37 269.9 31.6 356 17-377 34-469 (491)
6 2cfq_A Lactose permease; trans 100.0 7.9E-34 2.7E-38 268.4 18.5 351 18-372 30-401 (417)
7 2xut_A Proton/peptide symporte 100.0 1.1E-30 3.8E-35 254.3 28.2 348 20-372 38-504 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.7 8.2E-17 2.8E-21 153.2 17.3 176 192-372 28-208 (451)
9 4aps_A DI-OR tripeptide H+ sym 99.7 3.2E-16 1.1E-20 150.9 19.6 176 192-370 13-196 (491)
10 3o7q_A L-fucose-proton symport 99.7 9.9E-16 3.4E-20 145.1 20.5 175 194-372 28-231 (438)
11 2xut_A Proton/peptide symporte 99.6 2.8E-15 9.7E-20 145.5 17.3 176 192-370 12-198 (524)
12 2gfp_A EMRD, multidrug resista 99.6 2E-15 6.9E-20 140.1 13.6 166 196-365 4-169 (375)
13 2cfq_A Lactose permease; trans 99.4 4.6E-13 1.6E-17 126.1 11.2 145 29-174 258-403 (417)
14 4gc0_A D-xylose-proton symport 99.3 5.3E-12 1.8E-16 121.3 11.0 142 228-372 55-222 (491)
15 2b2h_A AMT-1, ammonium transpo 73.1 54 0.0018 29.7 15.4 25 116-140 109-133 (399)
16 2jln_A MHP1; hydantoin, transp 63.2 76 0.0026 29.7 11.8 55 112-167 20-76 (501)
17 2g9p_A Antimicrobial peptide l 51.8 4.7 0.00016 19.3 0.6 14 49-62 2-15 (26)
18 3mkt_A Multi antimicrobial ext 49.1 1.5E+02 0.0052 26.7 26.4 27 104-131 145-171 (460)
19 3hd6_A Ammonium transporter RH 44.7 2E+02 0.0067 26.8 16.6 21 193-213 222-242 (490)
20 2b6o_A Aquaporin-0, lens fiber 36.8 34 0.0012 28.9 4.2 23 346-368 197-219 (263)
21 3b9w_A Ammonium transporter fa 27.1 3.5E+02 0.012 24.4 16.6 22 193-214 176-197 (407)
22 2zz9_A Aquaporin-4; water tran 24.3 74 0.0025 27.5 4.2 20 347-366 205-224 (301)
23 2l2t_A Receptor tyrosine-prote 22.5 63 0.0022 18.7 2.3 9 365-373 29-37 (44)
24 3d9s_A Aquaporin-5, AQP-5; aqu 22.4 75 0.0026 26.9 3.8 18 350-367 204-221 (266)
25 4dve_A Biotin transporter BIOY 21.5 1.9E+02 0.0064 23.1 5.8 25 36-60 99-123 (198)
26 1j4n_A Aquaporin 1; membrane p 21.1 80 0.0027 26.8 3.8 21 347-367 208-228 (271)
27 2ks1_B Epidermal growth factor 20.9 71 0.0024 18.5 2.3 8 365-372 30-37 (44)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=1.5e-41 Score=324.70 Aligned_cols=351 Identities=13% Similarity=0.077 Sum_probs=300.9
Q ss_pred cchhhhhhhcCCcchHHHHHHHHHHHHHHhhhHHHHhhcccCCchhHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHH
Q psy14075 17 ARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF----GRTYGVLFLARSL 92 (414)
Q Consensus 17 ~~~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l 92 (414)
..|.+.+++ .++.++|++.+++.++..++++++|+++||+|||++++++.++.+++.+++++ +++++.++++|++
T Consensus 50 ~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 128 (451)
T 1pw4_A 50 AMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFL 128 (451)
T ss_dssp HHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHH
T ss_pred HHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHH
Confidence 357788899 99999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HhhhhhhhhhhHHHHHhhcCCCcchhhHHHHHHHHHHhhhhhhchhhhhHhhhhcC-ChhHHHHHHHHHHHHHHHHHHhc
Q psy14075 93 QGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG-KTAPFLILSALALGDGLLQLLLL 171 (414)
Q Consensus 93 ~G~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~ 171 (414)
+|++.+...+...+++.|++|+ ++|++++++.+.+.++|.+++|.+++.+.+..| ||+.|++.+++.++..++.++..
T Consensus 129 ~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 129 CGWFQGMGWPPCGRTMVHWWSQ-KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp HHHHHHHTHHHHHHHHHTTCTT-THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhccchHHHHHHHHCCc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999995 999999999999999999999999999988898 99999999999888777776666
Q ss_pred cCCCCCCCC-------C------------Cc---h--hhhhccChHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhCCCc
Q psy14075 172 QPGVVKQEV-------E------------PP---T--LKSLVMDPYILIAAGAITFANTGIAMLEPSLPIWMMDTMGADK 227 (414)
Q Consensus 172 ~~~~~~~~~-------~------------~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 227 (414)
+|++++.+. + +. + .++.+|+|.++...+..++..........++|.|+++.+|.++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 287 (451)
T 1pw4_A 208 RDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL 287 (451)
T ss_dssp CCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCH
T ss_pred cCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 554332110 0 00 1 3567889999999888888888888999999999998889999
Q ss_pred cchhhHhHHHHHHHHhhhhhhhhhhhhh--hhHHHHHHHHHHHH-HHHHHhhhhh--hhHHHHHHHHHHHHHHHhhhhhh
Q psy14075 228 WQQGVSFLPASISYLIGTNLFGPLGHRM--GRYLAALLGLLIIG-ICLMMIPLAR--NINHLIVPNAGLGFAIGMVDSSM 302 (414)
Q Consensus 228 ~~~g~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~-i~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~ 302 (414)
.+.++......++.+++.++.+++.||+ ++|+.+..+..+.. ++++++.+.+ +.+......++.|++.+...+..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 367 (451)
T 1pw4_A 288 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLI 367 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHH
Confidence 9999999999999999999999999999 99888877776666 6666666553 44555556666676666554333
Q ss_pred hhhhhhhhhcccccchhhHHhHHHHHHHH-HHhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcC
Q psy14075 303 MPELGYLVDIRHTAVYGSVYAIGDVAFCL-GFAIGPAMSGTLVNTIGFEWMLFIIAILDFMYAPLLYLLRN 372 (414)
Q Consensus 303 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 372 (414)
.....+..|++.||++.|+.+...++ |..++|.+.|.+.|..|++..|++.+++.+++.++.+..++
T Consensus 368 ---~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 368 ---GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp ---HHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888899999999999999999 99999999999999999999999988888887777666543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.6e-39 Score=309.52 Aligned_cols=342 Identities=14% Similarity=0.079 Sum_probs=288.5
Q ss_pred cchhhhhhhcCCcchHHHHHHHHHHHHHHhhhHHHHhhcccCCchhHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHH
Q psy14075 17 ARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIF---AFGRTYGVLFLARSLQ 93 (414)
Q Consensus 17 ~~~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~ 93 (414)
..|.+.+++|.|+.++|++.+.+.+++.++++++|+++||+|||++++++.++.+++.+++ +++++++.+++.|++.
T Consensus 48 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 127 (438)
T 3o7q_A 48 LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFII 127 (438)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3578899999999999999999999999999999999999999999999999999999999 8899999999999999
Q ss_pred hhhhhhhhhhHHHHHhhcCCCcchhhHHHHHHHHHHhhhhhhchhhhhHhh-hhcC------------------------
Q psy14075 94 GIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMY-QFVG------------------------ 148 (414)
Q Consensus 94 G~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~~g------------------------ 148 (414)
|++.+...+...+++.|++|+ ++|++++++.+.+.++|..++|.+++.+. +..+
T Consensus 128 G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (438)
T 3o7q_A 128 AAGLGCLETAANPFVTVLGPE-SSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVL 206 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSSCS-TTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHH
T ss_pred HhhHHHhhhhHHHHHHHHcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhh
Confidence 999999999999999999994 99999999999999999999999999998 5554
Q ss_pred -ChhHHHHHHHHHHHHHHHHHHhccCCCCCC--C--CC---CchhhhhccChHHHHHHHHHHHHHHHHHhhhhchHHH-H
Q psy14075 149 -KTAPFLILSALALGDGLLQLLLLQPGVVKQ--E--VE---PPTLKSLVMDPYILIAAGAITFANTGIAMLEPSLPIW-M 219 (414)
Q Consensus 149 -w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 219 (414)
||+.|++.+++.++..++.++...|+.+++ + ++ +.++++++|+|.++...+..++..........++|.| +
T Consensus 207 ~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (438)
T 3o7q_A 207 SVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAV 286 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999998888877776666555433322211 1 11 1356788999999998888888888888889999999 8
Q ss_pred HHHhCCCccchhhHhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhh
Q psy14075 220 MDTMGADKWQQGVSFLPASISYLIGTNLFGPLGHRMGRYLAALLGLLIIGICLMMIPLARNINHLIVPNAGLGFAIGMVD 299 (414)
Q Consensus 220 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 299 (414)
++.+|.++.+.+.......++.++++++.+++.||++||+.+..+..+..++++++.+.++.+. ....++.+++.+...
T Consensus 287 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~ 365 (438)
T 3o7q_A 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG-LIALTLCSAFMSIQY 365 (438)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHTTHH
T ss_pred hccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999999999999888888877777766544 334466777776665
Q ss_pred hhhhhhhhhhhhcccccchhhHHhHHHHHHHHHHhHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHH
Q psy14075 300 SSMMPELGYLVDIRHTAVYGSVYAIGDVAFCLGFAIGPAMSGTLVNTIG-FEWMLFIIAILDFMYAP 365 (414)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~ 365 (414)
+... ....+..|++ ++.+.++.. ...+|+.++|.+.|.+.|..| ++..|.+.+++.++..+
T Consensus 366 ~~~~---~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 366 PTIF---SLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHH---HHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHH---HHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4433 3456777765 788888776 677999999999999999999 99888876655554433
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=1.1e-37 Score=290.83 Aligned_cols=334 Identities=19% Similarity=0.191 Sum_probs=280.4
Q ss_pred cchhhhhhhcCCcchHHHHHHHHHHHHHHhhhHHHHhhcccCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Q psy14075 17 ARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIG 96 (414)
Q Consensus 17 ~~~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 96 (414)
..|.+.+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+++++++.+++.|+++|++
T Consensus 22 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~ 101 (375)
T 2gfp_A 22 AIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMG 101 (375)
T ss_dssp HHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHhhcCCCcchhhHHHHHHHHHHhhhhhhchhhhhHhhhhcCChhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy14075 97 SSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGLLQLLLLQPGVV 176 (414)
Q Consensus 97 ~~~~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~ 176 (414)
.+...+...+++.|++|+ |+|++++++.+...++|..++|.+++.+.++.+||+.|++.++..++..+...+..||+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 102 TGVGGVMARTLPRDLYER-TQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHHHHHHHHT-SSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred HHhhhhhHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 999999999999999994 9999999999999999999999999999998899999999998887776655555555443
Q ss_pred CCC---CCCchhhhhccChHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhCCCccchhhHhHHHHHHHHhhhhhhhhhhh
Q psy14075 177 KQE---VEPPTLKSLVMDPYILIAAGAITFANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYLIGTNLFGPLGH 253 (414)
Q Consensus 177 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~d 253 (414)
+++ +..+++++.+|+|+++...+..++..........+.|.|+++.+|.++.+.+.......++.+++.++.+++.|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 260 (375)
T 2gfp_A 181 VDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNK 260 (375)
T ss_dssp TTCCCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTT
T ss_pred CCcccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 23345678889999999888888888888889999999999888999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHH-HHHHHHHhh--h--hhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccchhhHHhHHHHH
Q psy14075 254 RMGRYLAALLGLLI-IGICLMMIP--L--ARNINHLIVPNAGLGFAIGMVDSSMMPELGYLVDIRHTAVYGSVYAIGDVA 328 (414)
Q Consensus 254 ~~~~~~~~~~~~~~-~~i~~~~~~--~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 328 (414)
|.+++. ..+... ...+...+. . .++.+......++.+++.+...+..... ..|..| ++||++.|+.+..
T Consensus 261 r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~---~~~~~p-~~~g~~~g~~~~~ 334 (375)
T 2gfp_A 261 RFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSG---AMEPFP-FLAGTAGALVGGL 334 (375)
T ss_dssp HHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHH---HHTHHH-HHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHH---HHHhCC-cccchHHHHHHHH
Confidence 998732 233332 222222211 2 1244555566777888888776655544 456666 7789999999999
Q ss_pred HHHHHhHHHHHHHHHHhhhchHHHHHHHH
Q psy14075 329 FCLGFAIGPAMSGTLVNTIGFEWMLFIIA 357 (414)
Q Consensus 329 ~~~g~~ig~~~~g~l~~~~g~~~~~~~~~ 357 (414)
.++|..++|.+.|.+.+..++...+.+.+
T Consensus 335 ~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 335 QNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 99999999999999998888887776643
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=7.4e-36 Score=288.52 Aligned_cols=345 Identities=13% Similarity=0.106 Sum_probs=271.4
Q ss_pred hcCCcchHHHHHHHHHHHHHHhhhHHHHhhcc-cCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhh
Q psy14075 25 LMGETKAVGVMFGSKAFVQLLANPLVGILTHR-VGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVS 103 (414)
Q Consensus 25 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 103 (414)
+|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.+++.|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCcch--hhHHHHHHHHHHhhhhhhchhhhhHhhhhcCChhHHHHHHHHHHHHHHHHHHhccCCCCCC---
Q psy14075 104 GMGMLAERYPDDRE--RGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGLLQLLLLQPGVVKQ--- 178 (414)
Q Consensus 104 ~~~~i~~~~~~~~~--r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--- 178 (414)
..++++|++|+ ++ |++++++++...++|..++|.+++.+.++.|||+.|++.++..++..+..++..++..+++
T Consensus 129 ~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (491)
T 4aps_A 129 VSTLVGTLYDE-HDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLR 207 (491)
T ss_dssp HHHHHHHHSSS-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSC
T ss_pred HHHHHHHHcCc-ccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccC
Confidence 99999999995 78 7788999999999999999999999999999999999988877776665554433221111
Q ss_pred CCC--C-chhhh-----------------------------------------------------------hccChHHHH
Q psy14075 179 EVE--P-PTLKS-----------------------------------------------------------LVMDPYILI 196 (414)
Q Consensus 179 ~~~--~-~~~~~-----------------------------------------------------------~~~~~~~~~ 196 (414)
+++ + ++.++ ..+....+.
T Consensus 208 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (491)
T 4aps_A 208 PTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIP 287 (491)
T ss_dssp CSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHH
T ss_pred CCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 000 0 00000 001112344
Q ss_pred HHHHHHHHHHHHHhhhhchHHHHHHHhCCCccchhhHhHHHHHHHHhhhhhhhhhhhhhhhHHHHH-----HHHHHHHHH
Q psy14075 197 AAGAITFANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYLIGTNLFGPLGHRMGRYLAAL-----LGLLIIGIC 271 (414)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-----~~~~~~~i~ 271 (414)
..+...+....+.....++|.|.++..+.+..+.+.......+..+++.++.+++.||++||+... .+..+.+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~ 367 (491)
T 4aps_A 288 LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLS 367 (491)
T ss_dssp HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 444555566667777888999999888888788899999999999999999999999999875543 677777777
Q ss_pred HHHhhhhh---------hhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccchhhHHhHHHHHHHHHHhHHHHHHHH
Q psy14075 272 LMMIPLAR---------NINHLIVPNAGLGFAIGMVDSSMMPELGYLVDIRHTAVYGSVYAIGDVAFCLGFAIGPAMSGT 342 (414)
Q Consensus 272 ~~~~~~~~---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~ 342 (414)
++++.... +.+......++.|++.+...+... ....|..|++.||++.|+.+...++|..++|.+.+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~---~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~ 444 (491)
T 4aps_A 368 FLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGL---SVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTL 444 (491)
T ss_dssp HTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHH---HHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHH---HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665532 445556667777888777655443 356788899999999999999999999999999988
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy14075 343 LVNTIGFEWMLFIIAILDFMYAPLLYLLRNPP 374 (414)
Q Consensus 343 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (414)
+.+ .++...|...+++.+++.++.+...++.
T Consensus 445 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 445 YNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp GGG-SSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred Hhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766 4677788888877777776666655443
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=3.3e-33 Score=269.88 Aligned_cols=356 Identities=16% Similarity=0.061 Sum_probs=255.2
Q ss_pred cchhhhhhhcC--------CcchHHHHHHHHHHHHHHhhhHHHHhhcccCCchhHHHHHHHHHHHHHHHH----------
Q psy14075 17 ARENRHKYLMG--------ETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFA---------- 78 (414)
Q Consensus 17 ~~~~~~~~~g~--------s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~---------- 78 (414)
++|.+.++++. ++++.|++.+.+.+|..++++++|+++||+|||+++.++.+++.++.++++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~ 113 (491)
T 4gc0_A 34 TVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSIN 113 (491)
T ss_dssp THHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSS
T ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 45666666632 345789999999999999999999999999999999999999999999998
Q ss_pred --------hhhhHHHHHHHHHHHhhhhhhhhhhHHHHHhhcCCCcchhhHHHHHHHHHHhhhhhhchhhhhHhhhh----
Q psy14075 79 --------FGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF---- 146 (414)
Q Consensus 79 --------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~---- 146 (414)
+++|+++++++|+++|++.|...+....+++|+.|+ ++|++..+..+.+..+|.++++.++..+...
T Consensus 114 ~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~-~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 192 (491)
T 4gc0_A 114 PDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPA-HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDAS 192 (491)
T ss_dssp SSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred chhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccc
Confidence 478999999999999999999999999999999995 9999999999999999999999888776543
Q ss_pred ----cCChhHHHHHHHHHHHHHHHHHHhccCCCCC----CCCC--C-----------------------------chhhh
Q psy14075 147 ----VGKTAPFLILSALALGDGLLQLLLLQPGVVK----QEVE--P-----------------------------PTLKS 187 (414)
Q Consensus 147 ----~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~-----------------------------~~~~~ 187 (414)
.+||..+.+..+..++..+..+ ..||.++. .+.+ . .....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (491)
T 4gc0_A 193 WLNTDGWRYMFASECIPALLFLMLLY-TVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLL 271 (491)
T ss_dssp TTTTTHHHHHHHTTHHHHHHHHHHGG-GSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred cccchhhHHHhhhhhhhhhhhhhhhh-cCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHH
Confidence 2477777777666665544444 44443310 0000 0 00011
Q ss_pred hccChHHHHHHHH-HHHHHHHHHhhhhchHHHHHHHhCCCccchhhHhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHH
Q psy14075 188 LVMDPYILIAAGA-ITFANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYLIGTNLFGPLGHRMGRYLAALLGLL 266 (414)
Q Consensus 188 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 266 (414)
.++.++....... .+........+..+.|.+.++ .+.+...........++..+++.++.+++.||+|||+.+..+..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~ 350 (491)
T 4gc0_A 272 MFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGAL 350 (491)
T ss_dssp HSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchH
Confidence 2233333333333 333334445555566655544 67777777777778889999999999999999999999998888
Q ss_pred HHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccchhhHHhHHHHHHHHHHhHHHHHHHH
Q psy14075 267 IIGICLMMIPLAR----NINHLIVPNAGLGFAIGMVDSSMMPELGYLVDIRHTAVYGSVYAIGDVAFCLGFAIGPAMSGT 342 (414)
Q Consensus 267 ~~~i~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~ 342 (414)
...++++.+.... +........++...+++... ......+..|.+|.+.|+++.|+.+...++++.+++.+.+.
T Consensus 351 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~ 428 (491)
T 4gc0_A 351 GMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW--GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPM 428 (491)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTT--THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHH--HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887766654421 11222222333333333222 12223457799999999999999999999999999998887
Q ss_pred HHhh------hchHHHHHHHHHHHHHHHHHHHHhcCCCchh
Q psy14075 343 LVNT------IGFEWMLFIIAILDFMYAPLLYLLRNPPTKE 377 (414)
Q Consensus 343 l~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (414)
+.+. .+....|++.+++++++.+..+++.++.|.+
T Consensus 429 l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 429 MDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 6543 3455677787887777777665544443433
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=100.00 E-value=7.9e-34 Score=268.41 Aligned_cols=351 Identities=14% Similarity=0.162 Sum_probs=252.3
Q ss_pred chh-hhhhhcCCcchHHHHHHHHHHHHHHhhhHHHHhhcccCCchhHHHHHHHHHHHH---HHHHhhhhHH-HHHHHHHH
Q psy14075 18 REN-RHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLST---LIFAFGRTYG-VLFLARSL 92 (414)
Q Consensus 18 ~~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~~~~-~l~~~r~l 92 (414)
.|. +++++|.|+.+.|++.+.+.+++.++++++|+++||+||||+++++..+++++. ....+++... .+...+.+
T Consensus 30 ~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (417)
T 2cfq_A 30 FPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIV 109 (417)
T ss_dssp HHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 456799999999999999999999999999999999999999999888776532 2223332221 23455666
Q ss_pred HhhhhhhhhhhHHHHHhhcCCC-cchhhHHHHHHHHHHhhhhhhchhhhhHhhhhcCChhHHHHHHHHHHHHHHHHHHhc
Q psy14075 93 QGIGSSCSSVSGMGMLAERYPD-DRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGLLQLLLL 171 (414)
Q Consensus 93 ~G~~~~~~~~~~~~~i~~~~~~-~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~ 171 (414)
.|++.+...+.....+.++.++ .++|+...+......++|..++|.+++++.+ .+||+.|++.++..++..+..++.+
T Consensus 110 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~ 188 (417)
T 2cfq_A 110 GGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAK 188 (417)
T ss_dssp GGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcC
Confidence 6666665555544555555431 1356777888888899999999999999987 5899999988776555444444333
Q ss_pred cCCCCC----C----CCCC---chhhhhccChHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhCC---CccchhhHhHHH
Q psy14075 172 QPGVVK----Q----EVEP---PTLKSLVMDPYILIAAGAITFANTGIAMLEPSLPIWMMDTMGA---DKWQQGVSFLPA 237 (414)
Q Consensus 172 ~~~~~~----~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~g~~~~~~ 237 (414)
||++++ + ++++ .++++++|+|+++...+..+.....+..+..++|.|+.+.++. +....+......
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 268 (417)
T 2cfq_A 189 TDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMG 268 (417)
T ss_dssp CCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHH
T ss_pred cccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHH
Confidence 333110 0 0111 2345678899888766665555555556666788888775542 234557777778
Q ss_pred HHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccc
Q psy14075 238 SISYLIGTNLFGPLGHRMGRYLAALLGLLIIGICLMMIPLARNINHLIVPNAGLGFAIGMVDSSMMPELGYLVDIRHTAV 317 (414)
Q Consensus 238 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
.++.+++.++.++++||++||+.+..+..+.+++.+.+.+.++.+...+..++.+++.+...+. ...+..|..|++.
T Consensus 269 ~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~p~~~ 345 (417)
T 2cfq_A 269 ELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVG---CFKYITSQFEVRF 345 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHH---HHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCHHH
Confidence 8888999999999999999999988888888887777666666555555555556555444332 2345778899999
Q ss_pred hhhHHhH-HHHHHHHHHhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcC
Q psy14075 318 YGSVYAI-GDVAFCLGFAIGPAMSGTLVNTIGFEWMLFIIAILDFMYAPLLYLLRN 372 (414)
Q Consensus 318 ~g~~~g~-~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 372 (414)
||++.+. .+....+|+.++|.+.|++.|..|+...|.+.+++.+++.++.+...+
T Consensus 346 ~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 346 SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999998 488889999999999999999889999998888888777766554443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.98 E-value=1.1e-30 Score=254.31 Aligned_cols=348 Identities=12% Similarity=0.074 Sum_probs=238.2
Q ss_pred hhhhhhc------CCcchHHHHHHHHHHHHHHhhhHHHHhhccc-CCchhHHHHHHHHHHHHHHHHhhh-hHHHHHHHHH
Q psy14075 20 NRHKYLM------GETKAVGVMFGSKAFVQLLANPLVGILTHRV-GYSLPMFTGFVIMFLSTLIFAFGR-TYGVLFLARS 91 (414)
Q Consensus 20 ~~~~~~g------~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~ 91 (414)
.+.+++| .++.+.|++.+.+.++..+++++.|+++||+ |||+++.++.++.+++.+++++++ +++.+++.|+
T Consensus 38 ~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (524)
T 2xut_A 38 FLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLF 117 (524)
T ss_dssp HHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3567788 9999999999999999999999999999999 999999999999999999999999 9999999999
Q ss_pred HHhhhhhhhhhhHHHHHhhcCCCcchhhHHHHH---HHHHHhhhhhhchhhhhHhhhhcCChhHHHHHHHHHHHHHHHHH
Q psy14075 92 LQGIGSSCSSVSGMGMLAERYPDDRERGNAMGI---ALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGLLQL 168 (414)
Q Consensus 92 l~G~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~---~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 168 (414)
+.|++.+...+...+++.|++|+ ++|+++.+. .+...++|..++|.+++.+.+..|||+.|++.+++.++..+..+
T Consensus 118 l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 118 LIALGSGGIKPLVSSFMGDQFDQ-SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHTTHHHHHHHHHHTCST-TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccchhHHHHHHHHcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999995 899776666 99999999999999999999989999999999888776655554
Q ss_pred HhccCCCCCC--CCCCch--------------------------------------------------------------
Q psy14075 169 LLLQPGVVKQ--EVEPPT-------------------------------------------------------------- 184 (414)
Q Consensus 169 ~~~~~~~~~~--~~~~~~-------------------------------------------------------------- 184 (414)
+..++.++++ +++..+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (524)
T 2xut_A 197 LGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGA 276 (524)
T ss_dssp SSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGG
T ss_pred HhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccch
Confidence 4332211100 000000
Q ss_pred hh------------hhccChHHHHHHHHHH---HHHHHHHhhhhchHHHHHHHhCCCc-cchhhHhHHHHHHHHhhhhhh
Q psy14075 185 LK------------SLVMDPYILIAAGAIT---FANTGIAMLEPSLPIWMMDTMGADK-WQQGVSFLPASISYLIGTNLF 248 (414)
Q Consensus 185 ~~------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~ 248 (414)
++ +..+.++.+....... +....+......++.+..+ .+.+. ...+.+.....++.+++..+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (524)
T 2xut_A 277 SLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAND-MVKPQWFEPAMMQALNPLLVMLLIPFN 355 (524)
T ss_dssp GTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHH-SCCCSSSCHHHHHTTSGGGHHHHGGGT
T ss_pred hhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHh-cCCCeeecHHHHHHHHHHHHHHhHHHH
Confidence 00 0001112211111111 1111111122223333222 22221 235556555566666666666
Q ss_pred hhhh----hhhhh----HHHHHHHHHHHHHHHHHhhhhh---------hhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q psy14075 249 GPLG----HRMGR----YLAALLGLLIIGICLMMIPLAR---------NINHLIVPNAGLGFAIGMVDSSMMPELGYLVD 311 (414)
Q Consensus 249 g~l~----d~~~~----~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 311 (414)
+++. ||.++ ++.+..+..+.+++++++.... +.+......++.|++.+...+... ....+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~---~~~~~ 432 (524)
T 2xut_A 356 NFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGL---EFAYS 432 (524)
T ss_dssp TTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHT---TTHHH
T ss_pred HhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 6654 44432 3456677777778777766532 445556667778888777755444 34668
Q ss_pred cccccchhhHHhHHHHHHHHHHhHHHHHHHHHHhhh----------ch-HHHHHHHHHHHHHHHHHHHHhcC
Q psy14075 312 IRHTAVYGSVYAIGDVAFCLGFAIGPAMSGTLVNTI----------GF-EWMLFIIAILDFMYAPLLYLLRN 372 (414)
Q Consensus 312 ~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~----------g~-~~~~~~~~~~~~~~~~~~~~~~~ 372 (414)
..|++.||+++|+.+...++|+.++|.+.|.+.+.. +. ...|++.+++.+++.++.++..+
T Consensus 433 ~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 433 QAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp HCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999998743 21 22366666666666555544433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.73 E-value=8.2e-17 Score=153.16 Aligned_cols=176 Identities=14% Similarity=0.114 Sum_probs=146.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhCCCccchhhHhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q psy14075 192 PYILIAAGAITFANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYLIGTNLFGPLGHRMGRYLAALLGLLIIGIC 271 (414)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~i~ 271 (414)
+.++...+..+........+...+|.+.++ + .+..+.+++.+...++..++.++.|+++||+|||+.+..+.++.+++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 105 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV 105 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHH
Confidence 334445555555566666667777776665 6 89999999999999999999999999999999999999999999999
Q ss_pred HHHhhh----hhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccchhhHHhHHHHHHHHHHhHHHHHHHHHHhhh
Q psy14075 272 LMMIPL----ARNINHLIVPNAGLGFAIGMVDSSMMPELGYLVDIRHTAVYGSVYAIGDVAFCLGFAIGPAMSGTLVNTI 347 (414)
Q Consensus 272 ~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~ 347 (414)
.++..+ .++.+.+.+..++.|++.+...+.... .+.|..|+++|++++++.+....+|..++|.+.+++.+..
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~---~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 182 (451)
T 1pw4_A 106 MLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGR---TMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 182 (451)
T ss_dssp HHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHH---HHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHH---HHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998888 888888888899999998887655543 4678888899999999999999999999999999999999
Q ss_pred c-hHHHHHHHHHHHHHHHHHHHHhcC
Q psy14075 348 G-FEWMLFIIAILDFMYAPLLYLLRN 372 (414)
Q Consensus 348 g-~~~~~~~~~~~~~~~~~~~~~~~~ 372 (414)
| |++.|++.+++.++..++.++..+
T Consensus 183 g~w~~~f~~~~~~~~~~~~~~~~~~~ 208 (451)
T 1pw4_A 183 NDWHAALYMPAFCAILVALFAFAMMR 208 (451)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9 999999988887776665544433
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.71 E-value=3.2e-16 Score=150.86 Aligned_cols=176 Identities=13% Similarity=0.087 Sum_probs=152.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhchHHHHHHH-----hCCCccchhhHhHHHHHHHHhhhhhhhhhhhh-hhhHHHHHHHH
Q psy14075 192 PYILIAAGAITFANTGIAMLEPSLPIWMMDT-----MGADKWQQGVSFLPASISYLIGTNLFGPLGHR-MGRYLAALLGL 265 (414)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~ 265 (414)
+.++...+..++..+.+.....+++.|+++. +|.+..+.++..+...++..++.++.|+++|| +|||+.+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~ 92 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG 92 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 4566777777778888888889999999998 99999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccc--hhhHHhHHHHHHHHHHhHHHHHHHHH
Q psy14075 266 LIIGICLMMIPLARNINHLIVPNAGLGFAIGMVDSSMMPELGYLVDIRHTAV--YGSVYAIGDVAFCLGFAIGPAMSGTL 343 (414)
Q Consensus 266 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~ig~~~~g~l 343 (414)
++..++.++..+.++.+.+.+..++.|++.+...+..... +.|..|+++ |+.+.+..+...++|..++|.+.+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~---~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 169 (491)
T 4aps_A 93 VLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTL---VGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAA 169 (491)
T ss_dssp HHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHH---HHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHH---HHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888888888888999999998876655544 667777777 77888889999999999999999999
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy14075 344 VNTIGFEWMLFIIAILDFMYAPLLYLL 370 (414)
Q Consensus 344 ~~~~g~~~~~~~~~~~~~~~~~~~~~~ 370 (414)
.+..||++.|++.++..+++.+..+..
T Consensus 170 ~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 170 QEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999877777766655544
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.70 E-value=9.9e-16 Score=145.14 Aligned_cols=175 Identities=13% Similarity=0.166 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHhCCCccchhhHhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy14075 194 ILIAAGAITFANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYLIGTNLFGPLGHRMGRYLAALLGLLIIGICLM 273 (414)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~i~~~ 273 (414)
+....+..+.............|.+ ++.+|.+..+.+++.+...++..++.++.|+++||+|||+.+..+.++.+++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~ 106 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA 106 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3344455555556666666777775 455899999999999999999999999999999999999999999999999988
Q ss_pred Hh---hhhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccchhhHHhHHHHHHHHHHhHHHHHHHHHH-hhhc-
Q psy14075 274 MI---PLARNINHLIVPNAGLGFAIGMVDSSMMPELGYLVDIRHTAVYGSVYAIGDVAFCLGFAIGPAMSGTLV-NTIG- 348 (414)
Q Consensus 274 ~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~-~~~g- 348 (414)
+. ...++.+.+.+..++.|++.+...+...+ ...|..|+++|+++.++.+....+|..++|.+.+.+. +..+
T Consensus 107 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 183 (438)
T 3o7q_A 107 LFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANP---FVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred HHHhccccccHHHHHHHHHHHHhhHHHhhhhHHH---HHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 88 67788888888999999999888665543 4678888999999999999999999999999999998 5444
Q ss_pred ------------------------hHHHHHHHHHHHHHHHHHHHHhcC
Q psy14075 349 ------------------------FEWMLFIIAILDFMYAPLLYLLRN 372 (414)
Q Consensus 349 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 372 (414)
|++.|.+.+....+..++.++.+.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 231 (438)
T 3o7q_A 184 QSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF 231 (438)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 888887777666665555544433
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.65 E-value=2.8e-15 Score=145.49 Aligned_cols=176 Identities=13% Similarity=0.063 Sum_probs=148.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhC------CCccchhhHhHHHHHHHHhhhhhhhhhhhhh-hhHHHHHHH
Q psy14075 192 PYILIAAGAITFANTGIAMLEPSLPIWMMDTMG------ADKWQQGVSFLPASISYLIGTNLFGPLGHRM-GRYLAALLG 264 (414)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~ 264 (414)
|.++...+..++..+.++....+++.|+++.+| .++.+.++..+...++..++.++.|+++||+ |||+.+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~ 91 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWL 91 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 455666777777778888888999999998889 9999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccchhhHHhH---HHHHHHHHHhHHHHHH
Q psy14075 265 LLIIGICLMMIPLAR-NINHLIVPNAGLGFAIGMVDSSMMPELGYLVDIRHTAVYGSVYAI---GDVAFCLGFAIGPAMS 340 (414)
Q Consensus 265 ~~~~~i~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~~g~~ig~~~~ 340 (414)
.++..++.++..+.+ +.+.+.+..++.|++.+...+.... ...|..|+++|+++.+. .+...++|..++|.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 92 SLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSS---FMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSM 168 (524)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHH---HHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHH---HHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888887 8888888888889998887655544 46677888888766555 8889999999999999
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy14075 341 GTLVNTIGFEWMLFIIAILDFMYAPLLYLL 370 (414)
Q Consensus 341 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 370 (414)
+.+.+..||+..|.+.+++.++..+..+..
T Consensus 169 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 169 PLLLKNFGAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp THHHHTSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998888777665555443
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.63 E-value=2e-15 Score=140.06 Aligned_cols=166 Identities=12% Similarity=0.171 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHHhhhhchHHHHHHHhCCCccchhhHhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q psy14075 196 IAAGAITFANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYLIGTNLFGPLGHRMGRYLAALLGLLIIGICLMMI 275 (414)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~i~~~~~ 275 (414)
...+..++...........+|.+.+ ++|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMAR-DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 3445556666666677777787654 489999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccchhhHHhHHHHHHHHHHhHHHHHHHHHHhhhchHHHHHH
Q psy14075 276 PLARNINHLIVPNAGLGFAIGMVDSSMMPELGYLVDIRHTAVYGSVYAIGDVAFCLGFAIGPAMSGTLVNTIGFEWMLFI 355 (414)
Q Consensus 276 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~ 355 (414)
.+.++.+.+.+..++.|++.+...+..... ..|..|+++|+++++..+....+|..++|.+.+.+.+..||+..|.+
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTL---PRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHH---HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 888888888888889999988776655544 56777788899999999999999999999999999999999999988
Q ss_pred HHHHHHHHHH
Q psy14075 356 IAILDFMYAP 365 (414)
Q Consensus 356 ~~~~~~~~~~ 365 (414)
.++..++..+
T Consensus 160 ~~~~~~~~~~ 169 (375)
T 2gfp_A 160 LLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 8777666554
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.43 E-value=4.6e-13 Score=126.06 Aligned_cols=145 Identities=15% Similarity=0.181 Sum_probs=124.8
Q ss_pred cchHHHHHHHHHHHHHHhhhHHHHhhcccCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHHH
Q psy14075 29 TKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGML 108 (414)
Q Consensus 29 ~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 108 (414)
..+.+++.+...++..++.++.|++.||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888899999999999999999999999999988888888888888888888888888777777778899
Q ss_pred hhcCCCcchhhHHHHH-HHHHHhhhhhhchhhhhHhhhhcCChhHHHHHHHHHHHHHHHHHHhccCC
Q psy14075 109 AERYPDDRERGNAMGI-ALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGLLQLLLLQPG 174 (414)
Q Consensus 109 ~~~~~~~~~r~~~~~~-~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~ 174 (414)
+|.+| ++.|+++.+. ++....+|..++|.+++.+.+..|++..|.+.+++.++..+..++..+++
T Consensus 338 ~~~~p-~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 338 TSQFE-VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHSC-HHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHHCC-HHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 99999 4999999999 48888999999999999999988899999998888888777666555543
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.32 E-value=5.3e-12 Score=121.27 Aligned_cols=142 Identities=18% Similarity=0.248 Sum_probs=110.1
Q ss_pred cchhhHhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhh------------------hhhhhHHHHHHHH
Q psy14075 228 WQQGVSFLPASISYLIGTNLFGPLGHRMGRYLAALLGLLIIGICLMMIP------------------LARNINHLIVPNA 289 (414)
Q Consensus 228 ~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~i~~~~~~------------------~~~~~~~~~~~~~ 289 (414)
.+.|+..+...++.++|.++.|+++||+|||+.+.++.++..++.++.. .+++.+.+++.-+
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~ 134 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRI 134 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHH
Confidence 3457788888899999999999999999999999999999988877665 3667888899999
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhcccccchhhHHhHHHHHHHHHHhHHHHHHHHHHhhh--------chHHHHHHHHHHHH
Q psy14075 290 GLGFAIGMVDSSMMPELGYLVDIRHTAVYGSVYAIGDVAFCLGFAIGPAMSGTLVNTI--------GFEWMLFIIAILDF 361 (414)
Q Consensus 290 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~--------g~~~~~~~~~~~~~ 361 (414)
+.|++.|...+... .++.|..|++.|++..+..+....+|..+++.+...+.+.. +|+..+.......+
T Consensus 135 l~G~g~G~~~~~~~---~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (491)
T 4gc0_A 135 IGGIGVGLASMLSP---MYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPAL 211 (491)
T ss_dssp HHHHHHHHHHHHHH---HHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhh
Confidence 99999998865544 45779999999999999999988888888888776665432 35555555555555
Q ss_pred HHHHHHHHhcC
Q psy14075 362 MYAPLLYLLRN 372 (414)
Q Consensus 362 ~~~~~~~~~~~ 372 (414)
+..+..+..++
T Consensus 212 ~~~~~~~~~pe 222 (491)
T 4gc0_A 212 LFLMLLYTVPE 222 (491)
T ss_dssp HHHHHGGGSCC
T ss_pred hhhhhhhcCCC
Confidence 44444444444
No 15
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=73.15 E-value=54 Score=29.66 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=15.6
Q ss_pred chhhHHHHHHHHHHhhhhhhchhhh
Q psy14075 116 RERGNAMGIALGGLALGVLIGPPFG 140 (414)
Q Consensus 116 ~~r~~~~~~~~~~~~~g~~ig~~l~ 140 (414)
-+|.|..++.-...-...++-|+++
T Consensus 109 aeR~kf~a~lif~~l~~~~vY~~~a 133 (399)
T 2b2h_A 109 AERAKVSSFILLSALWLTFVYAPFA 133 (399)
T ss_dssp TTTBCHHHHHHHHHHHHHHTHHHHH
T ss_pred hccccHHHHHHHHHHHHHHHhhhhh
Confidence 3566666666666666666667664
No 16
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=63.21 E-value=76 Score=29.72 Aligned_cols=55 Identities=15% Similarity=-0.008 Sum_probs=29.2
Q ss_pred CCCcchh-hHHHHHHHHHHhhhhhhchh-hhhHhhhhcCChhHHHHHHHHHHHHHHHH
Q psy14075 112 YPDDRER-GNAMGIALGGLALGVLIGPP-FGGIMYQFVGKTAPFLILSALALGDGLLQ 167 (414)
Q Consensus 112 ~~~~~~r-~~~~~~~~~~~~~g~~ig~~-l~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 167 (414)
.|+ ++| .....+.....+....++.. +++.+..-.+|...++...+-.++..++.
T Consensus 20 vp~-~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~ 76 (501)
T 2jln_A 20 TRY-AERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILL 76 (501)
T ss_dssp CCG-GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCh-hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHH
Confidence 453 555 56666666555555555555 33333334566666665555544444433
No 17
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=51.80 E-value=4.7 Score=19.27 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=11.2
Q ss_pred HHHHhhcccCCchh
Q psy14075 49 LVGILTHRVGYSLP 62 (414)
Q Consensus 49 ~~G~l~dr~Grr~~ 62 (414)
+.|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
No 18
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=49.07 E-value=1.5e+02 Score=26.75 Aligned_cols=27 Identities=7% Similarity=-0.341 Sum_probs=13.6
Q ss_pred HHHHHhhcCCCcchhhHHHHHHHHHHhh
Q psy14075 104 GMGMLAERYPDDRERGNAMGIALGGLAL 131 (414)
Q Consensus 104 ~~~~i~~~~~~~~~r~~~~~~~~~~~~~ 131 (414)
........+. .++|.+.....+....+
T Consensus 145 ~~~~~~~~l~-~~~~~~~~~~~~~~~~~ 171 (460)
T 3mkt_A 145 LFQALRSFTD-GMSLTKPAMVIGFIGLL 171 (460)
T ss_dssp HHHHHTTTTC-TTSCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCcHHHHHHHHHHHH
Confidence 3344455555 35566555555544443
No 19
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=44.68 E-value=2e+02 Score=26.79 Aligned_cols=21 Identities=14% Similarity=-0.107 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q psy14075 193 YILIAAGAITFANTGIAMLEP 213 (414)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~ 213 (414)
+.....+..++.+++..+++.
T Consensus 222 n~~~a~LGt~lLW~GWfGFN~ 242 (490)
T 3hd6_A 222 SDLFAMIGTLFLWMYWPSFNS 242 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhhch
Confidence 344455555555666555554
No 20
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=36.84 E-value=34 Score=28.94 Aligned_cols=23 Identities=17% Similarity=0.478 Sum_probs=12.9
Q ss_pred hhchHHHHHHHHHHHHHHHHHHH
Q psy14075 346 TIGFEWMLFIIAILDFMYAPLLY 368 (414)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~~ 368 (414)
.+.+.|.+++.-++..+...+.+
T Consensus 197 ~~~~~Wvy~vgP~~Ga~la~~~y 219 (263)
T 2b6o_A 197 NFTNHWVYWVGPVIGAGLGSLLY 219 (263)
T ss_dssp CCTTCTHHHHHHHHHHHHHHHHH
T ss_pred CccceeHHHHHHHHHHHHHHHHH
Confidence 34566777776655554444433
No 21
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=27.10 E-value=3.5e+02 Score=24.42 Aligned_cols=22 Identities=0% Similarity=-0.355 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q psy14075 193 YILIAAGAITFANTGIAMLEPS 214 (414)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~ 214 (414)
+.....+..++.+++..+++.-
T Consensus 176 n~~~~~lGt~lLW~GWfGFN~G 197 (407)
T 3b9w_A 176 SDRFSMLGSMVLWLFWPSFATA 197 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhhhhh
Confidence 3344445555555555555443
No 22
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=24.32 E-value=74 Score=27.50 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=11.0
Q ss_pred hchHHHHHHHHHHHHHHHHH
Q psy14075 347 IGFEWMLFIIAILDFMYAPL 366 (414)
Q Consensus 347 ~g~~~~~~~~~~~~~~~~~~ 366 (414)
+++.|.|++.-++..+...+
T Consensus 205 w~~~WVy~vgPiiGailaa~ 224 (301)
T 2zz9_A 205 WENHWIYWVGPIIGAVLAGA 224 (301)
T ss_dssp CTTTTHHHHHHHHHHHHHHH
T ss_pred CcceeeeeeHHHHHHHHHHH
Confidence 45667777665554444333
No 23
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=22.53 E-value=63 Score=18.67 Aligned_cols=9 Identities=11% Similarity=0.224 Sum_probs=3.7
Q ss_pred HHHHHhcCC
Q psy14075 365 PLLYLLRNP 373 (414)
Q Consensus 365 ~~~~~~~~~ 373 (414)
.++++++++
T Consensus 29 ~~~~~~RRR 37 (44)
T 2l2t_A 29 TFAVYVRRK 37 (44)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHhhhh
Confidence 333444443
No 24
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=22.41 E-value=75 Score=26.87 Aligned_cols=18 Identities=22% Similarity=0.656 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14075 350 EWMLFIIAILDFMYAPLL 367 (414)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~ 367 (414)
.|.+++.-++..+...+.
T Consensus 204 ~Wvy~vgP~~Ga~la~~~ 221 (266)
T 3d9s_A 204 HWVFWVGPIVGAVLAAIL 221 (266)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EeeeehHHHHHHHHHHHH
Confidence 778877665555444433
No 25
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=21.49 E-value=1.9e+02 Score=23.13 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhHHHHhhcccCCc
Q psy14075 36 FGSKAFVQLLANPLVGILTHRVGYS 60 (414)
Q Consensus 36 ~s~~~~~~~~~~~~~G~l~dr~Grr 60 (414)
+.-|.++..+++.+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4567778888888889998887643
No 26
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=21.14 E-value=80 Score=26.77 Aligned_cols=21 Identities=14% Similarity=0.404 Sum_probs=11.3
Q ss_pred hchHHHHHHHHHHHHHHHHHH
Q psy14075 347 IGFEWMLFIIAILDFMYAPLL 367 (414)
Q Consensus 347 ~g~~~~~~~~~~~~~~~~~~~ 367 (414)
+.+.|.|++.-++..+...+.
T Consensus 208 ~~~~wv~~vgP~~Ga~la~~~ 228 (271)
T 1j4n_A 208 FQDHWIFWVGPFIGAALAVLI 228 (271)
T ss_dssp CTTTTHHHHHHHHHHHHHHHH
T ss_pred CcceeHHHHHHHHHHHHHHHH
Confidence 456677776655444443333
No 27
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=20.88 E-value=71 Score=18.47 Aligned_cols=8 Identities=13% Similarity=0.276 Sum_probs=3.4
Q ss_pred HHHHHhcC
Q psy14075 365 PLLYLLRN 372 (414)
Q Consensus 365 ~~~~~~~~ 372 (414)
.+++++++
T Consensus 30 ~~~~~~RR 37 (44)
T 2ks1_B 30 GIGLFMRR 37 (44)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhhh
Confidence 33444444
Done!