RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14075
(414 letters)
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 129 bits (326), Expect = 6e-34
Identities = 93/342 (27%), Positives = 161/342 (47%), Gaps = 25/342 (7%)
Query: 31 AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLAR 90
G++ + + L + L G L+ R G + G ++ L +L+ AF + +L + R
Sbjct: 35 QAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGR 94
Query: 91 SLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKT 150
L G+G + ++AE +P +ERG A+G+ G LG L+GP GG++ + +G
Sbjct: 95 FLLGLGGGALYPAAAALIAEWFP-PKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWR 153
Query: 151 APFLILSALALGDGLLQLLLLQPGVVKQEVEPPTLKSLVMDPYILIAAGAITFANTGIAM 210
FLIL+ L L LL L LL +L+ A A + G
Sbjct: 154 WLFLILAILGLLLALLLLFLL--------------------RLLLLLALAFFLLSFGYYG 193
Query: 211 LEPSLPIWMMDTMGADKWQQGVSFLPASISYLIGTNLFGPLGHRMGRYLAALL-GLLIIG 269
L LP+++ + +G + G+ + ++G L G L R+GR LL GLL+
Sbjct: 194 LLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAA 253
Query: 270 ICLMMIPLARNINHLIVPNAGLGFAIGMVDSSMMPELGYLVDIRHTAVYGSVYAIGDVAF 329
+ L+++ LA ++ L+V LGF +G +++ ++ G+ + +
Sbjct: 254 LGLLLLALAPSLALLLVALLLLGFGLGFAFPALLT---LASELAPPEARGTASGLFNTFG 310
Query: 330 CLGFAIGPAMSGTLVNTIGFEWMLFIIAILDFMYAPLLYLLR 371
LG A+GP ++G L++T G+ + I+A L + A LL LL
Sbjct: 311 SLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352
Score = 58.5 bits (142), Expect = 2e-09
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 4/178 (2%)
Query: 194 ILIAAGAITFANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYLIGTNLFGPLGH 253
+L+ + +L P+LP+ D +G Q G+ S+ Y +G+ L G L
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSD 59
Query: 254 RMGRYLAALLGLLIIGICLMMIPLARNINHLIVPNAGLGFAIGMVDSSMMPELGYLVDIR 313
R GR LLGLL+ + +++ A ++ L+V LG G + + + +
Sbjct: 60 RFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAA---ALIAEWF 116
Query: 314 HTAVYGSVYAIGDVAFCLGFAIGPAMSGTLVNTIGFEWMLFIIAILDFMYAPLLYLLR 371
G + F LG +GP + G L ++G+ W+ I+AIL + A LL L
Sbjct: 117 PPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
Score = 35.4 bits (82), Expect = 0.044
Identities = 47/254 (18%), Positives = 82/254 (32%), Gaps = 30/254 (11%)
Query: 29 TKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFG-RTYGVLF 87
+A+G+ LL L G+L +G+ ++ L L+ F R +L
Sbjct: 122 GRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLA 181
Query: 88 LARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV 147
LA L G L E G+ L LG ++G GG++ +
Sbjct: 182 LAFFLLSFGYYGLLTYLPLYLQEVLGLS---AAEAGLLLSLFGLGGILGALLGGLLSDRL 238
Query: 148 GKTAPFLILSALALGDGLLQLLLLQPGVVKQEVEPPTLKSLVMDPYILIAAGAITFANTG 207
G+ L++ L GLL L + P + + A+ G
Sbjct: 239 GRRRLLLLIGLLLAALGLL--------------------LLALAPSLALLLVALLLLGFG 278
Query: 208 IAMLEPSLPIWMMDTMGADK------WQQGVSFLPASISYLIGTNLFGPLGHRMGRYLAA 261
+ P+L + + L ++ L+ L G+ + A
Sbjct: 279 LGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILA 338
Query: 262 LLGLLIIGICLMMI 275
L LL + L++
Sbjct: 339 ALALLAALLLLLLP 352
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 121 bits (305), Expect = 4e-33
Identities = 60/141 (42%), Positives = 85/141 (60%), Gaps = 1/141 (0%)
Query: 33 GVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSL 92
G++ A QL+ +PL G+LT R G + G I LST +FA VL +AR L
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 93 QGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAP 152
QG G++ + V+G ++A+ YP + ERG A+G+ G+ALG L+GPP GG++ QF+G AP
Sbjct: 61 QGFGAAFALVAGAALIADIYPPE-ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAP 119
Query: 153 FLILSALALGDGLLQLLLLQP 173
FL L+ LAL +L LL
Sbjct: 120 FLFLAILALAAFILLAFLLPE 140
Score = 36.5 bits (85), Expect = 0.006
Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 3/121 (2%)
Query: 239 ISYLIGTNLFGPLGHRMGRYLAALLGLLIIGICLMMIPLARNINHLIVPNAGLGFAIGMV 298
+ LI + L G L R GR L+GL I + M L+ NI LI+ GF
Sbjct: 9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA 68
Query: 299 DSSMMPELGYLVDIRHTAVYGSVYAIGDVAFCLGFAIGPAMSGTLVNTIGFEWMLFIIAI 358
+ + DI G + LG +GP + G L +G+ +AI
Sbjct: 69 LVAG---AALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAI 125
Query: 359 L 359
L
Sbjct: 126 L 126
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 108 bits (272), Expect = 2e-26
Identities = 88/320 (27%), Positives = 143/320 (44%), Gaps = 19/320 (5%)
Query: 31 AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLAR 90
+G++ + + LA PL G L+ R G + G ++ L L+ F + +L + R
Sbjct: 33 EIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLR 92
Query: 91 SLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKT 150
LQG+G + ++A+ +P ERG A+G+ G LG +GP GG++ G
Sbjct: 93 VLQGLGGGALFPAAAALIADWFP-PEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWR 151
Query: 151 APFLILSALALGDGLLQLLLLQPGVVKQEVEPPT----------LKSLVMDPYILIAAGA 200
A FLIL+ LAL +L LLL + + P K L+ DP + +
Sbjct: 152 AAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLAL 211
Query: 201 ITFANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYLIGTNLFGPLGHRMGRY-- 258
+ F L LP++ + +G G+ A + IG L G L R+GR
Sbjct: 212 LLFG-FAFFALLTYLPLY-QEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRR 269
Query: 259 -LAALLGLLIIGICLMMIPLARNINHLIVPNAGLGFAIGMVDSSMMPELGYLVDIRHTAV 317
L ALL L++ + L ++ L + L+V LGF G+V ++ + D+
Sbjct: 270 LLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALN---ALVSDLAPKEE 326
Query: 318 YGSVYAIGDVAFCLGFAIGP 337
G+ + + A LG A+GP
Sbjct: 327 RGTASGLYNTAGSLGGALGP 346
Score = 60.9 bits (148), Expect = 3e-10
Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 3/181 (1%)
Query: 200 AITFANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYLIGTNLFGPLGHRMGRYL 259
A A G ++L P+LP+++ + +G + G+ S+ Y + L G L R GR
Sbjct: 4 AAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRR 63
Query: 260 AALLGLLIIGICLMMIPLARNINHLIVPNAGLGFAIGMVDSSMMPELGYLVDIRHTAVYG 319
L+GLL+ + L+++ A ++ L+V G G + + + D G
Sbjct: 64 VLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAA---ALIADWFPPEERG 120
Query: 320 SVYAIGDVAFCLGFAIGPAMSGTLVNTIGFEWMLFIIAILDFMYAPLLYLLRNPPTKEEK 379
+ F LG A+GP + G L + G+ I+AIL + A L LL P E K
Sbjct: 121 RALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPESK 180
Query: 380 K 380
+
Sbjct: 181 R 181
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 80.0 bits (198), Expect = 2e-16
Identities = 82/335 (24%), Positives = 130/335 (38%), Gaps = 11/335 (3%)
Query: 29 TKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFL 88
A G + + A L PL+ +LT R+ + + +S L+ A ++ VL L
Sbjct: 47 EGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLL 106
Query: 89 ARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG 148
AR+L G+ + A P + RG A+ + GL L ++G P G + Q G
Sbjct: 107 ARALAGLAHGVFWSIAAALAARLVPPGK-RGRALALVFTGLTLATVLGVPLGTFLGQLFG 165
Query: 149 KTAPFLILSALALGDGLLQLLLLQPGVVKQEVEPP--TLKSLVMDPYILIAAGAITFANT 206
A FL ++ LAL LL LL P + + P TL L+ P +L+ A T
Sbjct: 166 WRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMT 225
Query: 207 GIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYLIGTNLFGPLGHRMGRYLAALLGLL 266
G L + ++ G + L I+ IG L G L R R LL
Sbjct: 226 GHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGPRRALIAALLL 285
Query: 267 IIGICLMMIPLARNINHLIVPNAGLGFAIGMVDSSMMPELGYLVDIRHTA--VYGSVYAI 324
+ L + + + GFA G + A ++
Sbjct: 286 LALALLALTFTGASPALALALLFLWGFAFS------PALQGLQTRLARLAPDAADLAGSL 339
Query: 325 GDVAFCLGFAIGPAMSGTLVNTIGFEWMLFIIAIL 359
AF LG A+G A+ G +++ +G+ ++ A L
Sbjct: 340 NVAAFNLGIALGAALGGLVLDALGYAATGWVGAAL 374
Score = 35.7 bits (83), Expect = 0.037
Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 2/126 (1%)
Query: 44 LLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVS 103
+ N L G L R + ++ + G + + L G S +
Sbjct: 261 FIGNLLGGRLADRGPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQG 320
Query: 104 GMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGD 163
LA PD + ++ +A LG+ +G GG++ +G A + +AL L
Sbjct: 321 LQTRLARLAPDAADLAGSLNVA--AFNLGIALGAALGGLVLDALGYAATGWVGAALLLLA 378
Query: 164 GLLQLL 169
LL LL
Sbjct: 379 LLLALL 384
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 65.7 bits (161), Expect = 1e-11
Identities = 66/353 (18%), Positives = 129/353 (36%), Gaps = 38/353 (10%)
Query: 31 AVGVMFGSKAFVQLLANPLVGILTHR------------VGYSLPMFTGFVIMFLSTLIFA 78
AVG +F +P+VG + R + ++P+ V++F + +
Sbjct: 36 AVGTIFLVARIWDAFTDPIVGAIIDRTRTRWGKFRPWLLIGAIPLAISLVLLFATPFGLS 95
Query: 79 FGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPP 138
F+ L G+ + ++ ++ D +ER + G +G L+
Sbjct: 96 MTAKLIYAFITYILLGLAYTFVNIPYWSLIPVLTRDPKERTSLASYRRIGATIGGLLVAV 155
Query: 139 FGGIMYQFVGKTAPFLILSALALGDGLLQLLLL---------QPGVVKQEVEPPTL---- 185
+ +G AL +L ++ + V ++ E +L
Sbjct: 156 IAPPLVALLGGGNGAKGYFLAALIIAILAVVGFLICFAGTKERVSVPPEQKEKVSLRDMF 215
Query: 186 KSLVMDPYILIAAGAITFANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYLIGT 245
K+L + +LI +A+ L + +G V L +I+ ++G
Sbjct: 216 KALFKNRPLLILLLLYLLNALAMAVRNGLLLYYFTYVLGNAGL-FSVLLLIGTIAAILGA 274
Query: 246 NLFGPLGHRMGRYLAALLGLLIIGICLMMIPLAR--NINHLIVPNAGLGFAIGMVDSSMM 303
L+ L R G+ LLG+L+ I L+++ ++ +V G +G+
Sbjct: 275 PLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLLPW 334
Query: 304 PELGYLVD-------IRHTAVYGSVYAIGDVAFCLGFAIGPAMSGTLVNTIGF 349
L +VD R + S+Y+ D LG A+G A+ G L+ G+
Sbjct: 335 AMLADVVDYGEWKTGKRREGITFSLYSFADK---LGGALGGAIVGLLLAFAGY 384
Score = 31.4 bits (72), Expect = 0.79
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Query: 23 KYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRT 82
Y++G V+ +L PL L R G G ++ + ++ F
Sbjct: 250 TYVLGNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPP 309
Query: 83 YGV--LFLARSLQGIGSSCSSVSGMGMLAE 110
+ + L GIG +++ MLA+
Sbjct: 310 GSLWLFLVLVVLAGIGLGLATLLPWAMLAD 339
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 57.7 bits (140), Expect = 4e-09
Identities = 76/377 (20%), Positives = 132/377 (35%), Gaps = 50/377 (13%)
Query: 33 GVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSL 92
G +F + ++ ++ G L R G + VI + T + AF Y L++ R L
Sbjct: 32 GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVL 91
Query: 93 QGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAP 152
G + + ++A +P ER A+ I LG +IG P G +
Sbjct: 92 LGAAEAPFFPGIILIVASWFP-ASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWA 150
Query: 153 FLILSALALGDGLLQLLLLQP-------------------------GVVKQEVEPPTLKS 187
F+I L + G+L L + G + +K
Sbjct: 151 FIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKE 210
Query: 188 LVMDPYILIAAGAITFANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYLIGTNL 247
L+ D + A N G+ P +++ G + G I IG L
Sbjct: 211 LLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMIL 270
Query: 248 FGPL--------GHRMGRYLAALLGLLIIGICLMMIPLARNINHLIVPNAGLGF---AIG 296
G L + A++ L++ + + NI + + LGF G
Sbjct: 271 GGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYV-NIPYAALALVALGFFGLGAG 329
Query: 297 MVDSSMMPEL--GYLVDIRHTAVYGSVYAIGDVAFCLGFAIGPAMSGTLVNTIG-FEWML 353
+ +++ + G + G + ++G LG +GP + G + T G F L
Sbjct: 330 AIGWALISDNAPGNIA----GLTGGLINSLG----NLGGIVGPIVIGAIAATTGSFAGAL 381
Query: 354 FIIAILDFMYAPLLYLL 370
++A L + L YLL
Sbjct: 382 MVVAALA-LIGALSYLL 397
Score = 32.3 bits (74), Expect = 0.45
Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 12/170 (7%)
Query: 219 MMDTMGADKWQQGVSFLPASISYLIGTNLFGPLGHRMGRYLAALLGLLIIGICLMMIPLA 278
+ + +G Q G F S Y++G G L R G + ++I G+ + A
Sbjct: 20 LQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA 79
Query: 279 RNINHLIVPNAGLGFAIGMVDSSMMPELG-YLVDIRHTAVYGSVYAIGDVAFCLGFAIGP 337
L + L +G ++ P + + + + +I + A LG IG
Sbjct: 80 GAYVSLYI----LRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGG 135
Query: 338 AMSGTLVNTIGFEWMLFIIAILDFMYAPLLY-LLRNPP------TKEEKK 380
+ G ++ ++W I +L ++ L + +PP T+EEK
Sbjct: 136 PLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKY 185
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 56.2 bits (136), Expect = 1e-08
Identities = 75/313 (23%), Positives = 110/313 (35%), Gaps = 21/313 (6%)
Query: 49 LVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGML 108
L G L+ R G + G I LS+L A L + R +Q G+S SV ++
Sbjct: 59 LWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALV 118
Query: 109 AERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGLLQL 168
+ YP + E I + LAL + P GG + ++ A F LS + L
Sbjct: 119 RDIYPGE-ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIF 177
Query: 169 LLLQPGVVKQEVEPP------TLKSLVMDPYILIAAGAITFANTGIAMLEPSLPIWMMDT 222
+L P + E T L+ A + G P +D
Sbjct: 178 FIL-PETLPYEARIQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDI 236
Query: 223 MGADKWQQGVSFLPASISYLIGTNLFGPLGHRMGRY--LAALLGLLIIGICLMMIPLARN 280
MG G+ F I+ + G L G + G L L L + L+ I
Sbjct: 237 MGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILG 296
Query: 281 ---INHLIVPNAGLGFAIGMVDSSMMPELGYLVDIRHTAVYGSVYAIGDVAFCLGFAIGP 337
+I P +G M+ S M L D H A G+ A+ L +G
Sbjct: 297 LGSWAMIIGPMMFVGIGNSMISSIAMA--YALEDFPHVA--GTASAL---FGTLRLVLG- 348
Query: 338 AMSGTLVNTIGFE 350
A+ G LV+ I
Sbjct: 349 AIVGYLVSLIHGN 361
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter.
This subfamily belongs to the major facilitator family.
Members include the oxalate/formate antiporter of
Oxalobacter formigenes, where one substrate is
decarboxylated in the cytosol into the other to consume
a proton and drive an ion gradient [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 377
Score = 51.7 bits (124), Expect = 3e-07
Identities = 64/350 (18%), Positives = 120/350 (34%), Gaps = 25/350 (7%)
Query: 31 AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLAR 90
AV + F ++ P+ G+L + G G ++ L +A + L+L
Sbjct: 39 AVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTY 98
Query: 91 SLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKT 150
L G + + + +PD +RG A GI +GG LG I P + G
Sbjct: 99 GLASAGVGIAYGIALNTAVKWFPD--KRGLASGIIIGGYGLGSFILSPLITSVINLEGVP 156
Query: 151 APFLILSALALGDGLLQLLLL-------QPGVVKQE---VEPPTLKSLVMDP-YILIAAG 199
A F+ + + L L+ +L + V+ T+ ++ P + ++
Sbjct: 157 AAFIYMGIIFL---LVIVLGAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLS 213
Query: 200 AITFANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYLIGTNLFGPLGHRMGRYL 259
A +G+ ++ P + VS I G G L ++GR
Sbjct: 214 FFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISS--IFNGGGRPFLGALSDKIGRQK 271
Query: 260 AALLGLLIIGICLMMIPLARNIN--HLIVPNAGLGFAIGMVDSSMMPELGYLVDIRHTAV 317
+ I + + + +N + A + F G S + + ++A
Sbjct: 272 TMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAA 331
Query: 318 -YGSVYAIGDVAFCLGFAIGPAMSGTLVNTIGFEWMLFIIAILDFMYAPL 366
YG +Y A + G ++ + IGFE+ + L
Sbjct: 332 NYGFLYT----AKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSLAL 377
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 365
Score = 51.2 bits (123), Expect = 4e-07
Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 15/230 (6%)
Query: 131 LGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGLLQLLLLQPGVVKQEVEPPT------ 184
L ++GP GG+MY +G + + LL + + P + E++ +
Sbjct: 139 LFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRD 198
Query: 185 ----LKSLVMDPYILI-AAGAITFANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASI 239
+K ++ +P + A+ F + P +G G +
Sbjct: 199 TREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGL 258
Query: 240 SYLIGTNLFGPLGHRMGRYLAALLGLLIIGICLMMIPLARNINHLI-VPNAGLGFAIGMV 298
L+G L G LG R + +IG+ ++++ L L V +G G +
Sbjct: 259 GALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPI 318
Query: 299 DSSMMPELGYLVDIRHTAVYGSVYAIGDVAFCLGFAIGPAMSGTLVNTIG 348
+P+ L + G V+ + +G ++G L + +G
Sbjct: 319 ---NVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365
Score = 31.5 bits (72), Expect = 0.88
Identities = 35/183 (19%), Positives = 77/183 (42%), Gaps = 5/183 (2%)
Query: 193 YILIAAGAITFANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYLIGTNLFGPLG 252
+L AA I+ T I + +LP++++ G+ ++ L + Y++ + + G L
Sbjct: 2 RLLFAAQLISLIGTAITQV--ALPLYVLAGTGS-ASVLSLAALAGMLPYVVLSPIAGALA 58
Query: 253 HRMGRYLAALLGLLIIGICLMMIPLARNINHLIVPN-AGLGFAIGMVDSSMMPEL-GYLV 310
R R + LI + + ++P + L + L + + + P L
Sbjct: 59 DRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLP 118
Query: 311 DIRHTAVYGSVYAIGDVAFCLGFAIGPAMSGTLVNTIGFEWMLFIIAILDFMYAPLLYLL 370
D+ ++ L + +GP + G + T+G +W +++ A+ + A L+ +
Sbjct: 119 DLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSV 178
Query: 371 RNP 373
R P
Sbjct: 179 RIP 181
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 41.0 bits (96), Expect = 8e-04
Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 5/120 (4%)
Query: 29 TKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFL 88
T + + + + G+ R G LPM T V+ TL F Y +F+
Sbjct: 46 TVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFI 105
Query: 89 ARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG 148
AR + GIG S + E +P R A G+ + G A+G + +Y V
Sbjct: 106 ARLVIGIGMGGEYGSSAAYVIESWPKHL-RNKASGLLISGYAVGAV----VAAQVYSLVV 160
>gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional.
Length = 394
Score = 41.0 bits (97), Expect = 9e-04
Identities = 66/267 (24%), Positives = 97/267 (36%), Gaps = 35/267 (13%)
Query: 51 GILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAE 110
G L+ RVG + G I L TL+ F + VL A ++QG+G+ G++A
Sbjct: 64 GPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVG-----GVMAR 118
Query: 111 RYPDDRERGNAMGIALGGLALGVLIGP---PF-GGIMYQFVGKTAPFLILSALALGDGLL 166
P D G + A L +G+L+ P P GG++ G A +L L L G
Sbjct: 119 TLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS 178
Query: 167 QLLLLQPGVVKQEVEPPTLKS-------------LVMDPYILIAAGAITFANTGIAMLEP 213
+ L S L+M LI T A GIA+ E
Sbjct: 179 MARWMPETRPADARRTRVLASYRTLLSNRRFNCYLLM----LIG----TLA--GIAVFEA 228
Query: 214 SLPIWMMDTMGADKWQQGVSFLPASISYLIGTNLFGPLGHRMGRYLAALLGLLIIGICLM 273
+ M +G + F+ + G G R + + ++ LM
Sbjct: 229 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLM 288
Query: 274 MIP---LARNINHLIVPNAGLGFAIGM 297
IP N+ L+VP A F GM
Sbjct: 289 WIPGWFGVMNVWTLLVPAALFFFGAGM 315
Score = 28.3 bits (64), Expect = 7.5
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 239 ISYLIGTNLFGPLGHRMGRYLAALLGLLIIGICLMMIPLARNINHLIVPNA--GLGFAIG 296
++Y + +GPL R+GR L+G+ I + ++ A ++ LI +A GLG +G
Sbjct: 54 LTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVG 113
Query: 297 MVDSSMMP 304
V + +P
Sbjct: 114 GVMARTLP 121
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 40.4 bits (95), Expect = 0.001
Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 15/150 (10%)
Query: 224 GADKWQQGVSFLPASISYLIGTNLFGPLGHRMGRYLAALLGLLIIGICLMMIPLARNINH 283
G D Q G F I G FGPL R+GR L +L+ + ++ LA N+
Sbjct: 48 GLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQ 107
Query: 284 LIVPNAGLGFAIGMVDSSMMPELGYLVD------IRHTAVYGSVYAIGDVAFCLGFAIGP 337
L++ G +G +MP L LV R TAV + G + +G A+G
Sbjct: 108 LLILRFLAGLGLG----GLMPNLNALVSEYAPKRFRGTAV--GLMFCG---YPIGAAVGG 158
Query: 338 AMSGTLVNTIGFEWMLFIIAILDFMYAPLL 367
++G L+ G+ + ++ I + LL
Sbjct: 159 FLAGWLIPVFGWRSLFYVGGIAPLLLLLLL 188
>gnl|CDD|129977 TIGR00899, 2A0120, sugar efflux transporter. This family of
proteins is an efflux system for lactose, glucose,
aromatic glucosides and galactosides, cellobiose,
maltose, a-methyl glucoside and other sugar compounds.
They are found in both gram-negative and gram-postitive
bacteria [Transport and binding proteins, Carbohydrates,
organic alcohols, and acids].
Length = 375
Score = 40.5 bits (95), Expect = 0.001
Identities = 58/283 (20%), Positives = 106/283 (37%), Gaps = 24/283 (8%)
Query: 31 AVGVMFGSKAFVQLLANPLVGILTHRVG--YSLPMFTGFVIMFLSTLIFAFGRTYGVL-F 87
+G+ + A V + + L+ + G L +F ++ L+ L+FA+ R Y +L
Sbjct: 34 MIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFC-CLLAALACLLFAWNRNYFLLLV 92
Query: 88 LARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAM--GIALGGLALGVLIGPPFGGIMYQ 145
L L S+ + + LA + D R M + ++L +IGPP +
Sbjct: 93 LGVLLSSFAST--ANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL 150
Query: 146 FVGKTAPFLILSALALGDGLLQLLLLQPGVVKQEVEPPTLKSLVM-------DPYILIAA 198
G T FL + + G+L L L P P L L + D +L A
Sbjct: 151 GFGFTVMFLTAALAFVLCGVLVWLFL-PSY--PRGAPGALTRLEVRGLLASRDTRLLFVA 207
Query: 199 GAITFANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASIS----YLIGTNLFGPLGHR 254
+ + + ++ ++P+ ++ +G G+ A+ L+ L G R
Sbjct: 208 CTLMWGCNILYII--NMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKR 265
Query: 255 MGRYLAALLGLLIIGICLMMIPLARNINHLIVPNAGLGFAIGM 297
LAAL G+ L + ++ +G G+
Sbjct: 266 RLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGI 308
Score = 29.7 bits (67), Expect = 2.5
Identities = 33/147 (22%), Positives = 54/147 (36%), Gaps = 3/147 (2%)
Query: 25 LMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYG 84
L K G+M G+ A +++ L G L R G M + A +
Sbjct: 230 LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLW 289
Query: 85 VLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMY 144
L + + L I ++G+GML + G A + +G +I GGI+
Sbjct: 290 ALLMLQLLNAI--FIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILA 347
Query: 145 QFVGKTAPFLILSALALGDGLLQLLLL 171
+ A + + L L LLL+
Sbjct: 348 ERWSYHAVYWFAIVM-LIVALFCLLLI 373
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 39.1 bits (92), Expect = 0.004
Identities = 56/219 (25%), Positives = 89/219 (40%), Gaps = 33/219 (15%)
Query: 40 AFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSC 99
A QLL PL R G + G + L +L + + L + R +Q +G
Sbjct: 55 ALGQLLWGPLS----DRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCS 110
Query: 100 SSVSGMGMLAERYPDDRERG---NAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLIL 156
++V ++ +RYP + M + +AL + P G + G A F L
Sbjct: 111 AAVIWQALVIDRYPAQKANRVFATIMPL----VALSPALAPLLGAWLLNHFGWQAIFATL 166
Query: 157 SALALGDGLLQL--LLLQPGVVKQEVEPPT------LKSLVMDPYILI--AAGAITFAN- 205
A+ L LL L L L+P ++ LKS +LI A A FA
Sbjct: 167 FAITL---LLILPTLRLKPSKKARKQSQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWL 223
Query: 206 TGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYLIG 244
TG P +++ MG G+S++P +I++L+G
Sbjct: 224 TG-------SPF-ILEQMGYSPADIGLSYVPQTIAFLVG 254
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 38.8 bits (91), Expect = 0.005
Identities = 74/392 (18%), Positives = 139/392 (35%), Gaps = 64/392 (16%)
Query: 31 AVGVMFGSKAFVQLLANPLVGILTHR------------VGYSLPMFTGFVIMFLST---- 74
G +F + + +P++G + R + ++P V++F++
Sbjct: 49 LAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSM 108
Query: 75 ---LIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRER----GNAMGIALG 127
LI+A TY +L L +L I + + E D +ER M A
Sbjct: 109 TGKLIYALV-TYMLLGLGYTLVNI-PYGA------LGPEITQDPQERASLTSWRMVFASL 160
Query: 128 GLALGVLIGPPF--------GGIMYQFVGKTAPFLILSALALGDGLLQLLLLQPGVVKQE 179
G L ++ PP + YQ + + L ++ +++ K
Sbjct: 161 GGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTG 220
Query: 180 VEPPTLKSLVM----DPYILIAAGAITFANTGIAMLEPSLPIWMMDTMGADKWQQGVSFL 235
V+ S ++ P +L+ + + + ++ +G + + L
Sbjct: 221 VKLKLKDSFLLIFKNRPLLLLLLMNL-LLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLL 279
Query: 236 PASISYLIGTNLFGPLGHRMGRYLAALLGLLI-IGICLMMIPLARNINHLIVP---NAGL 291
+ LIG L+ L + G+ L+GLL+ L++ LIV AG+
Sbjct: 280 ASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGV 339
Query: 292 GFAIGM-VDSSMMPELG----YLVDIRHTAVYGSVYAIGDVAFCLGFAIGPAMSGTLVNT 346
G I + +M+ + + +R G VY+ LG A+ + G ++
Sbjct: 340 GTGIANPLPWAMVADTVDYGEWKTGVRRE---GIVYSGMTFFRKLGLALAGFIPGWILGA 396
Query: 347 IGF--------EWMLFIIAILDFMYAPLLYLL 370
IG+ LF I L + LL LL
Sbjct: 397 IGYVPNVSAQSASALFGIRFLFIILPALLLLL 428
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 38.5 bits (90), Expect = 0.005
Identities = 49/281 (17%), Positives = 102/281 (36%), Gaps = 39/281 (13%)
Query: 49 LVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGML 108
++G ++ R + + G ++ + L F F + V+ +L GI +
Sbjct: 49 VMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTV 108
Query: 109 AERYPDDRERGNAMGIALGGLALGVLIGPP-FGGIMYQFVGKTAPFLILSALALGDGLLQ 167
+ + ERG + +G + PP + + F++ +A+ L+
Sbjct: 109 TKWFS-RSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLIC 167
Query: 168 LLLLQP-----GVVKQEVEPP-------------------TLKSLVMDPYI-LIAAGAIT 202
LLL+ G+ E P L+ ++++ + I+ G +
Sbjct: 168 FLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVF 227
Query: 203 FANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYLIGTNLFGPL------GHRMG 256
+L+ S P+++ G K + +F + L+GT L G L G R
Sbjct: 228 VYVVRTGILDWS-PLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGP 286
Query: 257 RYLAALLGLLIIGICLMMIPLARNINHLIVPNAGLGFAIGM 297
+ + +++ + + P A + LI FA+G
Sbjct: 287 LAVFFMALIIVSLLVYWLNPAANPLMDLI-----CLFALGF 322
>gnl|CDD|184957 PRK14995, PRK14995, methyl viologen resistance protein SmvA;
Provisional.
Length = 495
Score = 37.4 bits (87), Expect = 0.014
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 51 GILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAE 110
G L R+G+ + G + L++L AF T L R+L IG++ + + +
Sbjct: 62 GALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRA 121
Query: 111 RYPDDRERGNAMGI--ALGGLALGVLIGPPFGGIMYQFVGKTAPFLI 155
+ ++++R A+G+ A+G G GP GGI+ + + FLI
Sbjct: 122 TFTEEKQRNMALGVWAAVGS--GGAAFGPLVGGILLEHFYWGSVFLI 166
>gnl|CDD|237958 PRK15403, PRK15403, multidrug efflux system protein MdtM;
Provisional.
Length = 413
Score = 36.7 bits (85), Expect = 0.017
Identities = 44/193 (22%), Positives = 76/193 (39%), Gaps = 13/193 (6%)
Query: 49 LVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGML 108
L+G L+ R+G + TG +I L+ F + +AR +QG + G +
Sbjct: 70 LLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTV 129
Query: 109 AERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGLLQL 168
E + + M I + + +IGP G + FV F I++ + L + L
Sbjct: 130 QEAF-GQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGL-IAFVGL 187
Query: 169 LLLQPGVVKQEVEPPTLKSLVMD-------PYILIAAGAITFANTGIAMLEPSLPIWMMD 221
LL P VK+ P + KS++ D L A ++ + + P+ ++D
Sbjct: 188 LLAMPETVKRGAVPFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILID 247
Query: 222 ----TMGADKWQQ 230
T W Q
Sbjct: 248 AGGMTTSQFAWTQ 260
Score = 35.6 bits (82), Expect = 0.038
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 17/153 (11%)
Query: 232 VSFLPASIS-YLIGTN----LFGPLGHRMGRYLAALLGLLIIGICLMMIPLARNINHLIV 286
VS PAS+S YL G L GPL R+GR + G LI + ++ ++
Sbjct: 50 VSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLI 109
Query: 287 PNAGLGFAIGMVDS----SMMPELGYLVDIRHTAVYGSVYAIGDVAFCLGFAIGPAMSGT 342
G +I + + ++ G I+ A+ S+ + + IGP
Sbjct: 110 ARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPI-------IGPLSGAA 162
Query: 343 LVNTIGFEWMLFIIAILDFMYAPLLYLLRNPPT 375
L++ + ++ + IIA++ + A + LL P T
Sbjct: 163 LMHFVHWKVLFAIIAVMGLI-AFVGLLLAMPET 194
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 35.8 bits (81), Expect = 0.033
Identities = 56/248 (22%), Positives = 98/248 (39%), Gaps = 3/248 (1%)
Query: 31 AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGV--LFL 88
G++ + + + L G L R G + G ++ L TL+ A G+ L +
Sbjct: 40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLI 99
Query: 89 ARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGI-ALGGLALGVLIGPPFGGIMYQFV 147
R LQG+G +L+E +P+ ERG A+G+ LG ALG+ +GP G++ +
Sbjct: 100 LRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGAL 159
Query: 148 GKTAPFLILSALALGDGLLQLLLLQPGVVKQEVEPPTLKSLVMDPYILIAAGAITFANTG 207
L A LG LL L+LL ++ P + +++ L+ I
Sbjct: 160 LWGWRAAFLLAALLGLLLLILVLLLDLLLAAPRLPLAVGLALIELGKLLLLLLILLLGGL 219
Query: 208 IAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYLIGTNLFGPLGHRMGRYLAALLGLLI 267
+ +L + A G++ L + LI L L G A +
Sbjct: 220 VLLLLGLYLSAAGFGLRALLLGLGLALLALFVGALILLVLLPILLGAAGGLSALVGAAGG 279
Query: 268 IGICLMMI 275
+ +++
Sbjct: 280 LLALILLG 287
>gnl|CDD|182502 PRK10504, PRK10504, putative transporter; Provisional.
Length = 471
Score = 35.9 bits (83), Expect = 0.039
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 48 PLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGM 107
P G L RVG FT V+ L +L A T L LAR LQG+G + G
Sbjct: 63 PASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLT 122
Query: 108 LAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLI 155
+ + P ++ + L G +G L+GP GG++ ++ FLI
Sbjct: 123 VMKIVPREQYMAAMTFVTLPG-QVGPLLGPALGGLLVEYASWHWIFLI 169
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 35.7 bits (83), Expect = 0.043
Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 10/128 (7%)
Query: 49 LVGILTHRVGYSLPMFTGFVIMFLSTLI--FAFGRTYGVLFLARSLQGIGSSCSSVSGMG 106
G L R G + G V+ + L+ FA G+++ +L + R + G+G SV
Sbjct: 65 FAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPM 124
Query: 107 MLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAP---FLILSALALGD 163
++E P G LG+ G I+ + K + + I L
Sbjct: 125 YISEIAPK-----KLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVP 179
Query: 164 GLLQLLLL 171
+L L+ L
Sbjct: 180 AILLLIGL 187
Score = 31.5 bits (72), Expect = 0.90
Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 19/156 (12%)
Query: 224 GADKWQQGVSFLPASISYLIGTNLFGPLGHRMGR---YLAALLGLLIIGICLMMIPLARN 280
A G+ S+ LIG+ G LG R GR L + L +IG L ++
Sbjct: 42 AASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNV-LFVIGALLQGFAKGKS 100
Query: 281 INHLIVPNAGLGFAIGM--VDSSMMPELGYLVDIRHTAVYGSVYAIGDVAFCLGFAIGPA 338
LIV +G +G V M Y+ +I + G++ ++ + G + A
Sbjct: 101 FYMLIVGRVIVGLGVGGISVLVPM-----YISEIAPKKLRGALGSLYQLGITFGILVA-A 154
Query: 339 MSGTLVNTI----GFEWML---FIIAILDFMYAPLL 367
+ G +N G+ L F+ AIL + L
Sbjct: 155 IIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFL 190
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli [Cellular
processes, Toxin production and resistance, Transport
and binding proteins, Other].
Length = 485
Score = 35.8 bits (83), Expect = 0.043
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 48 PLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGM 107
PL G L R G L +L+ ++ + R +QG G
Sbjct: 55 PLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFST 114
Query: 108 LAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIM 143
L YP ++ RG AM I L VL+ P G +
Sbjct: 115 LLNIYPPEK-RGRAMAI----WGLTVLVAPALGPTL 145
Score = 34.3 bits (79), Expect = 0.11
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 40 AFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLA----RSLQGI 95
+L++P+ G + ++ + G ++ + AF T FLA + ++G
Sbjct: 301 GLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGF 360
Query: 96 GSSCS 100
G C
Sbjct: 361 GMGCF 365
Score = 30.0 bits (68), Expect = 2.3
Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 215 LPIWMMDTMGADKWQQGVSFLPASISYLIGTNLFGPLGHRMGRYLAALLGLLIIGICLMM 274
LP+++ +G Q G+ LP ++ ++ + + G +G ++ +GL++ +
Sbjct: 278 LPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYW 337
Query: 275 IPLARNIN----HLIVPNAGLGFAIGMVDSSMMP 304
+ + +P GF +G MP
Sbjct: 338 RAFTFTPDTPFLAIALPQFIRGFGMGC---FFMP 368
>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional.
Length = 408
Score = 35.3 bits (81), Expect = 0.051
Identities = 68/335 (20%), Positives = 141/335 (42%), Gaps = 17/335 (5%)
Query: 33 GVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSL 92
G++F +A+P G L R G + + + M + ++ + + R+L
Sbjct: 57 GLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRAL 116
Query: 93 QGI-GSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTA 151
G+ G + + + +A + P ++ G A+G G G L+GP GG++ G
Sbjct: 117 LGLLGGFVPNANAL--IATQVPRNKS-GWALGTLSTGGVSGALLGPLAGGLLADSYGLRP 173
Query: 152 PFLILSALALGDGLLQLLLL----QPGVVKQEVEPPTLKSLVMDPYILIAAGAITF-ANT 206
F I +++ L+ L + QP K+ + + + + +P ++++ T
Sbjct: 174 VFFITASVLFLCFLVTLFCIRENFQPVSKKEMLHMREVVTSLKNPKLVLSLFVTTLIIQV 233
Query: 207 GIAMLEPSLPIWMMDTMGADKWQQGVSFLPAS---ISYLIGTNLFGPLGHRMGRYLAALL 263
+ P L +++ + G +S + AS ++ L+ G LG R+G L+
Sbjct: 234 ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPE-KILI 292
Query: 264 GLLIIGICLMMIPLARNINHLIVPNAGLGFAIGMVDSSMMPELGYLVDIRHTA-VYGSVY 322
LI + L++IP++ L + L F +G D +++P + L+ + + G ++
Sbjct: 293 TALIFSV-LLLIPMSFVQTPLQL--GILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIF 349
Query: 323 AIGDVAFCLGFAIGPAMSGTLVNTIGFEWMLFIIA 357
+ +G GP M + GF + + A
Sbjct: 350 SYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTA 384
Score = 34.5 bits (79), Expect = 0.086
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 238 SISYL---IGTNLFGPLGHRMGRYLAALLGLLIIGICLMMIPLARNINHLIVPNAGLGFA 294
SI++L I + +G L R GR + L L +GI ++++ LA+NI ++ A LG
Sbjct: 61 SITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLL 120
Query: 295 IGMVDSSMMPELGYLVDIRHTAVYGSVYAIGDVAF--CLGFAIGPAMSGTLVNTIGFEWM 352
G V P L+ + S +A+G ++ G +GP G L ++ G +
Sbjct: 121 GGFV-----PNANALIATQ-VPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPV 174
Query: 353 LFIIA-ILDFMYAPLLYLLRN---PPTKEEKKVGRQTLINEKSSTLI 395
FI A +L + L+ +R P +K+E R+ + + K+ L+
Sbjct: 175 FFITASVLFLCFLVTLFCIRENFQPVSKKEMLHMREVVTSLKNPKLV 221
>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter. This model
represents a subgroup of the more broadly defined model
TIGR00890, which in turn belongs to the Major
Facilitator transporter family. Seed members for this
family include the known oxalate/formate antiporter of
Oxalobacter formigenes, as well as transporter subunits
co-clustered with the two genes of a system that
decarboxylates oxalate into formate. In many of these
cassettes, two subunits are found rather than one,
suggesting the antiporter is sometimes homodimeric,
sometimes heterodimeric.
Length = 405
Score = 35.5 bits (82), Expect = 0.051
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 9/149 (6%)
Query: 31 AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLAR 90
A+ V F + P+ G + G + + G ++ L ++ A+ + L+ A
Sbjct: 39 AIQVAFTLFVVTETWLVPIEGWFVDKYGPRIVVMFGGIMCGLGWVLNAYADSLPALYAAA 98
Query: 91 SLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKT 150
+ GIG+ + +G + +PD +RG A G+ G G + M + G
Sbjct: 99 VVAGIGAGAVYGTCVGNALKWFPD--KRGLAAGLTAAGFGAGAALTVVPIAAMIKVSGYQ 156
Query: 151 APFLILSALALGDG----LLQLLLLQPGV 175
A F+ LG G LL LLL P
Sbjct: 157 AAFMY---FGLGQGIVIVLLALLLRAPSP 182
>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
cotransporter. [Transport and binding proteins,
Anions].
Length = 465
Score = 35.5 bits (82), Expect = 0.054
Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 33 GVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGV----LFL 88
G++ S + Q++ VG L + Y G + S + G +
Sbjct: 79 GLILSSHFYGQIIIQIPVGYLAGK--YVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVF 136
Query: 89 ARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIM 143
R +QG+ S + ++ + P +ER +G++ G LG I P G +
Sbjct: 137 CRVIQGLAQGSVSPATHKIIVKWAPP-KERSRLLGMSTSGFQLGTFIFLPISGWL 190
>gnl|CDD|233173 TIGR00892, 2A0113, monocarboxylate transporter 1. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 455
Score = 34.7 bits (80), Expect = 0.081
Identities = 71/348 (20%), Positives = 131/348 (37%), Gaps = 52/348 (14%)
Query: 46 ANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFL-ARSLQGIGSSCSSVSG 104
P+ IL +R G + G ++ L ++ +F L+L A + G+G + +
Sbjct: 70 GGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPS 129
Query: 105 MGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDG 164
+ ML + + R R A G+A+ G + + P +++ G FLIL L L
Sbjct: 130 LTMLGKYF--YRRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCC 187
Query: 165 LLQLLLLQPGVVKQEVEPPTLKSLVMDPYILIAAGAIT------------FANTG----- 207
+ L+ G ++ + + + L D + T F + G
Sbjct: 188 VCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYL 247
Query: 208 ----IAMLEPSLPIWMMDTMGADKWQQGVS----------------FLPASISYLIGTNL 247
I L PI + DK GV F S + G
Sbjct: 248 SGNVIMFLGFFAPIIFLVPYAKDK---GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKW 304
Query: 248 FGPLGHRMGRYLAALLGLLIIGICLMMIPLARNINHLIVPNAGLGFAIGMVDSSMMPELG 307
P H +YL + LL G+ ++ LA + L++ G + G V +++ E+
Sbjct: 305 IRP--HV--QYLFSF-ALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSV-GALLFEV- 357
Query: 308 YLVDIRHTAVYGSVYAIGDVAFCLGFAIGPAMSGTLVNTIG-FEWMLF 354
L+D+ + S + + C IGP ++G LV+ ++++ +
Sbjct: 358 -LMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFY 404
Score = 31.2 bits (71), Expect = 0.93
Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 22/141 (15%)
Query: 40 AFVQLLANPLVGIL--THRVGYSLPMFTGFVIMF--LSTLIFAFGRTYGVL-----FLAR 90
FV + A P G++ + + F ++F L+ L+ A Y L F
Sbjct: 286 GFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGL 345
Query: 91 SLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGK- 149
S +G+ V + A+R+ +A+G+ VLIGPP G +
Sbjct: 346 SFGSVGALLFEVLMDLVGAQRFS------SAVGLVTIVECCAVLIGPPLAGRLVDATKNY 399
Query: 150 ------TAPFLILSALALGDG 164
+ ++ + L L G
Sbjct: 400 KYIFYASGSIVVSAGLFLAIG 420
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 34.9 bits (81), Expect = 0.097
Identities = 54/260 (20%), Positives = 100/260 (38%), Gaps = 36/260 (13%)
Query: 66 GFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDR-ERGNAMGI 124
+ L L + G + F L G S+ S + G++ E + R N +
Sbjct: 87 EVGLTLLIVLAYYLGWFWL-AFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLE 145
Query: 125 ALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALA------LGDGLLQLLLL------- 171
A +A +L G +++ V P IL +A L +L L+
Sbjct: 146 AFTIVA--ILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVP 203
Query: 172 ---QPGVVKQEVEPP-----TLKSLVMDPYILIAAGAITFANTGIAMLEPSLPIWMMDTM 223
K++ P LK L D + +A +++ + + + P + + +
Sbjct: 204 AAAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVL 263
Query: 224 GADKWQQ-GVSFLPASISYLIGTNLFGPLGHRMGRYLAALLGLLIIG-----ICLMMIPL 277
G D Q ++I IG+ L G L GR++ LGL+ +G + L ++P
Sbjct: 264 GLDNTFQVQYLLAASAIGIGIGSLLAGRLS---GRHIE--LGLVPLGALGLALSLFLLPT 318
Query: 278 ARNINHLIVPNAGLGFAIGM 297
A ++ ++V GF+ G+
Sbjct: 319 APSLASVLVLFFLFGFSAGL 338
>gnl|CDD|235348 PRK05122, PRK05122, major facilitator superfamily transporter;
Provisional.
Length = 399
Score = 34.5 bits (80), Expect = 0.097
Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 27/160 (16%)
Query: 32 VGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLI----FAFGR----TY 83
G++ + LL+ P G +G + G LS L+ +
Sbjct: 53 AGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSL 112
Query: 84 GVLFLARSLQGIGSS----CSSVSGMGMLAERYPDDRERGNAM---GIAL-GGLALGVLI 135
+L L R L GIG S S + G+G + + G + GIA G LA I
Sbjct: 113 LLLLLGRLLLGIGESLAGTGSILWGIGRVGALHT-----GRVISWNGIATYGALA----I 163
Query: 136 GPPFGGIMYQFVGKTAPFLILSALALGDGLLQLLLLQPGV 175
G P G ++Y + G L++ LAL GLL L +P V
Sbjct: 164 GAPLGVLLYHWGGLAGLGLLIMLLALL-GLL-LARPRPAV 201
>gnl|CDD|225179 COG2270, COG2270, Permeases of the major facilitator superfamily
[General function prediction only].
Length = 438
Score = 33.8 bits (78), Expect = 0.14
Identities = 73/393 (18%), Positives = 123/393 (31%), Gaps = 56/393 (14%)
Query: 29 TKAVGVMFGSKAFVQLLANPLVGIL---THRVGYSLPMFTGFVIMFLSTLIFAFGRTY-- 83
T G + L P++G + FT I+ L F +Y
Sbjct: 57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLL 116
Query: 84 -GVLFLARSLQGIGSSCSSVSGMGML---AERYPDDRERGNAMGIA-LGGLAL-----GV 133
+LFL L IG S+V ML + R G + LG + L
Sbjct: 117 LLLLFLI--LASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLG 174
Query: 134 LIGPPFGGIMYQFVGKTAPFLI-------LSALALGDGLLQLLLLQPGVVKQEVEPP--- 183
GI +G L+AL L ++L K PP
Sbjct: 175 FALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTAL 234
Query: 184 ---------TLKSLVMDPYILIAAGAITFANTGIAMLEPSLPIWMMDTMGADKWQQGVSF 234
T K + +++ A F G+ + + M GA +
Sbjct: 235 RNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTI-----LAMGGVFGAADLGLSSTE 289
Query: 235 LPASISYLIGTNLFGPLGHRMGRYLAALLG---LLIIGICLMMIP-----LARNINHLIV 286
L + I ++ LG + +L G +L+IG+ ++ I +
Sbjct: 290 L---LLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWI 346
Query: 287 PNAGLGFAIGMVDSSMMPELGYLVDIRHTAVYGSVYAIGDVAFCLGFAIGPAMSGTLVNT 346
+G ++G +S L LV + +YA+ A +GP + +
Sbjct: 347 LGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASF---LGPFLVAVITQI 403
Query: 347 IGFEWMLFIIAILDFMYAPLLYLLRNPPTKEEK 379
G +++I+ + LL LLR +
Sbjct: 404 TG-SSRAGVLSIIVLLLIGLLLLLRVKVPGRRE 435
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 33.9 bits (78), Expect = 0.14
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 10/120 (8%)
Query: 38 SKAFV-QLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIG 96
S AF+ + L+G + R G L M V+ + TL F Y LF+AR + G+G
Sbjct: 62 SAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMG 121
Query: 97 SSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGV--------LIGPPFGGIMYQFVG 148
+ S + E +P R A G + G ++G L+ P +G F+G
Sbjct: 122 MAGEYGSSATYVIESWP-KHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG 180
>gnl|CDD|182234 PRK10091, PRK10091, MFS transport protein AraJ; Provisional.
Length = 382
Score = 32.8 bits (75), Expect = 0.31
Identities = 65/330 (19%), Positives = 127/330 (38%), Gaps = 23/330 (6%)
Query: 31 AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLAR 90
A G M A ++ P++ + + R + + + +F +Y +L + R
Sbjct: 39 AAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGR 98
Query: 91 SLQGIGSSCSSVSGMG-MLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGK 149
+ G + G+G ++ + + A+ + G+ + L+G P G + Q
Sbjct: 99 LVSGFPH--GAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSW 156
Query: 150 TAPFLILSALALGDGLLQLLLLQPGVVKQEVEPPT--------LKSLVMDPYILIAAGAI 201
FL+++ + L + V E L+S P+++ AA
Sbjct: 157 RYTFLLIAVF----NIAVLASIYFWVPDIRDEAKGGLREQFHFLRSPA--PWLIFAATM- 209
Query: 202 TFANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYLIGTNLFGPLGHRMGRYLAA 261
F N G+ + +MM G + + + ++G L G L R A
Sbjct: 210 -FGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIA 268
Query: 262 LLGLLIIGICLMMIPLARNINHLIVPNAGLGFAIGMVDSSMMPELGYLVDIRHTAVYGSV 321
+ II + L+M+ + + A + A G+ S ++ L + + + G+
Sbjct: 269 AVTDFIIVLALLMLFFFGGMKTASLIFAFICCA-GLFALSAPLQILLLQNAKGGELLGA- 326
Query: 322 YAIGDVAFCLGFAIGPAMSGTLVNTIGFEW 351
A G +AF LG AIG A G ++ T+G +
Sbjct: 327 -AGGQIAFNLGSAIG-AYCGGMMLTLGLAY 354
>gnl|CDD|183255 PRK11646, PRK11646, multidrug resistance protein MdtH; Provisional.
Length = 400
Score = 32.7 bits (75), Expect = 0.33
Identities = 37/107 (34%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 66 GFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIA 125
G +IM LS LF L IGS + L+ D R RG+ MG +
Sbjct: 280 GLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAE-PARETLSASLADARARGSYMGFS 338
Query: 126 LGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGD-GLLQLLLL 171
GLALG IG GG ++ +GK L + LG GL+ LL L
Sbjct: 339 RLGLALGGAIGYIGGGWLFD-LGKALNQPELPWMMLGIIGLITLLAL 384
>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter
(Peptide:H+ symporter), bacterial. The model describes
proton-dependent oligopeptide transporters in bacteria.
This model is restricted in its range in recognizing
bacterial proton-dependent oligopeptide transporters,
although they are found in yeast, plants and animals.
They function by proton symport in a 1:1 stoichiometry,
which is variable in different species. All of them are
predicted to contain 12 transmembrane domains, for which
limited experimental evidence exists [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 475
Score = 32.1 bits (73), Expect = 0.50
Identities = 35/184 (19%), Positives = 62/184 (33%), Gaps = 7/184 (3%)
Query: 26 MGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGV 85
+ +A + A V LL + G M G +++ L + A +
Sbjct: 45 FSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDL 104
Query: 86 LFLARSLQGIGSSCSSVSGMGMLAERY--PDDRERGNAMGIALGGLALGVLIGPPFGGIM 143
+F +GS + M+ + Y D R + + +G I P G++
Sbjct: 105 IFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVI 164
Query: 144 YQFVGKTAPFLILSALALGDGLLQLLLLQPGVVKQEVEPPTLKSLVMDP----YILIAAG 199
+ G F L+A+ + GLL + + P L L+AA
Sbjct: 165 AENYGYHVGF-NLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAAL 223
Query: 200 AITF 203
A+ F
Sbjct: 224 ALVF 227
>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins,
alkaline phosphatase superfamily [Cell envelope
biogenesis, outer membrane].
Length = 650
Score = 32.0 bits (73), Expect = 0.63
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 239 ISYLIGTNLFGPLGHRMGRYLAALLGLLIIGICLMMIPLARNINHLI-VPNAGL--GFAI 295
+S L+ LF + L +L LLI + ++ I R + +PNA L F +
Sbjct: 64 VSLLLLLLLFKGVDALNIFRL--ILALLISILLILDILFYRFFIDFLTIPNALLIEDFNL 121
Query: 296 GMVDSSMMPELG-----YLVDIRHTAVY 318
G + S + L ++VD+ +
Sbjct: 122 GKLGFSALSLLYPEDILFVVDLILLILL 149
>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator).
[Transport and binding proteins, Anions].
Length = 366
Score = 31.5 bits (72), Expect = 0.82
Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 11/140 (7%)
Query: 37 GSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF-GRTYGVLFLARSLQGI 95
+ A ++++ LV R +L + +++ + L ++Y VL L R GI
Sbjct: 48 LAGAVLRIILGFLVDKFGPRYTTTLSL----LLLAIPCLWAGLAVQSYSVLLLLRLFIGI 103
Query: 96 GSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGV----LIGPPFGGIMYQFVGKTA 151
S S M ++ +P + +G A+G+A G +G + PP G + G A
Sbjct: 104 AG-GSFASCMPWISFFFPK-KIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA 161
Query: 152 PFLILSALALGDGLLQLLLL 171
A + + LL
Sbjct: 162 HLAWGWAFVIVPAGILLLPA 181
>gnl|CDD|225538 COG2991, COG2991, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 77
Score = 28.6 bits (64), Expect = 1.1
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 65 TGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGM 107
T F++ F L+ G + G +F +S++G SC ++ +G+
Sbjct: 2 TTFLLTFGIFLLVIAGMSIGYIFKRKSIKG---SCGGIAALGI 41
>gnl|CDD|129980 TIGR00902, 2A0127, phenyl proprionate permease family protein.
This family of proteins is involved in the uptake of
3-phenylpropionic acid. This uptake mechanism is for the
metabolism of phenylpropanoid compounds and plays an
important role in the natural degradative cycle of these
aromatic molecules [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 382
Score = 30.7 bits (69), Expect = 1.6
Identities = 41/174 (23%), Positives = 58/174 (33%), Gaps = 31/174 (17%)
Query: 228 WQQGVSFLPASISYLIGTN---------LFGPLGHRMGRYLAAL--LGLLIIGICLMMIP 276
W +G+ I LIG F PL + AL L L
Sbjct: 30 WLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSA 89
Query: 277 LARNINHLIVPNAGLGFAIGM---VDSSMMPELGYLVDIRHTAV---YGSVYAIGDVAFC 330
A N L + AIG+ S+ MP L + YG V IG AF
Sbjct: 90 GAHNAWLLFI-------AIGLFALFFSAGMPIGDALANTWQKQFGLDYGKVRLIGSAAF- 141
Query: 331 LGFAIGPAMSGTLVNTIGFEWMLFIIAILDFMYAPLLYLLRNPPTKEEKKVGRQ 384
IG A+ G L+ + +L I+ + +L++ PT K +
Sbjct: 142 ---IIGSALFGGLIGMFDEQNILAILTAGLAFML-IGFLIK--PTIPPKDAIPE 189
>gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and
metabolism].
Length = 663
Score = 30.3 bits (69), Expect = 2.0
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 121 AMGIALGGLAL-GVLIGPPFGGIMYQFVGKTAPFLILSAL 159
AM + G+AL G I P+GG F P + L+AL
Sbjct: 413 AMAAIMNGIALHGGFI--PYGGTFLVFSDYARPAVRLAAL 450
>gnl|CDD|226624 COG4143, TbpA, ABC-type thiamine transport system, periplasmic
component [Coenzyme metabolism].
Length = 336
Score = 30.0 bits (68), Expect = 2.5
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 14/55 (25%)
Query: 181 EPPTLKSLVMDPYILIAAGAITFAN-----TGIAMLEPSLPIWMMDTMGADKWQQ 230
P +LK LV Y AG I + + G+ L +W + G D +
Sbjct: 144 PPKSLKDLVEPEY----AGKIIYQDPRTSSPGLGFL-----LWTISVYGEDGAPE 189
>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system;
Provisional.
Length = 377
Score = 29.5 bits (67), Expect = 3.2
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 243 IGTNLFGPLGHRMGRYLAALLGLLIIGICLMMIPLARNINHLIVPNAGLGFA 294
IG +GP+ GR L G L+ + + LA+ I+ LI G A
Sbjct: 41 IGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLA 92
>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA;
Provisional.
Length = 406
Score = 29.1 bits (66), Expect = 4.4
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 231 GVSFLPASIS-YLIGTNLF----GPLGHRMGRYLAALLGLLIIGICLMMIPLARNINHLI 285
G ++P S++ YL G GPL R+GR L G+ + + I LA++I
Sbjct: 46 GAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFT 105
Query: 286 ----VPNAGLGFAIGMV 298
+ GL F IG V
Sbjct: 106 LLRFLQGIGLCF-IGAV 121
>gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed.
Length = 500
Score = 29.0 bits (65), Expect = 4.8
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 14/96 (14%)
Query: 41 FVQLLANPLVGILTHRVGYSLPMFTGFVI-MFLSTLIF-------AFGRTYGV-----LF 87
F ++ +P++ + +++G LPM F I M L + F F G+ L
Sbjct: 327 FWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLI 386
Query: 88 LARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMG 123
+ LQ IG S G+ M+A+ P R G MG
Sbjct: 387 ASYGLQSIGELMISGLGLAMVAQLVP-QRLMGFIMG 421
>gnl|CDD|211613 TIGR00882, 2A0105, oligosaccharide:H+ symporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 396
Score = 28.9 bits (65), Expect = 5.2
Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 15/147 (10%)
Query: 33 GVMFGSKAFVQLLANPLVGILTHRVGYSLPMF---TGFVIMFLSTLIFAFGRTYGVLFLA 89
G++F + +L PL G+++ ++G + +G +++F I+ FG L
Sbjct: 41 GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILV 100
Query: 90 RSLQG---IGSSCSSVSGMGMLAERYPDDRERGNAM--GIALGGLALGVLIGPPFGGIMY 144
++ G +G S+ +G E Y + R + G A +G + GI++
Sbjct: 101 GAIVGGLYLGFVFSAGAG---AIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGILF 157
Query: 145 QFVGKTAPFLILSALALGDGLLQLLLL 171
+ F + S AL +L LLL+
Sbjct: 158 S-IDPQIVFWLGSGFAL---ILMLLLM 180
>gnl|CDD|237569 PRK13952, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 142
Score = 27.9 bits (63), Expect = 5.4
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 12/41 (29%)
Query: 105 MGMLAERYPDDRE---RGNAMGIALGGLALGVLIGPPFGGI 142
M ML E +E +GN M LA+GV+IG FG I
Sbjct: 1 MSMLKEF----KEFALKGNVMD-----LAVGVIIGGAFGKI 32
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 28.8 bits (65), Expect = 5.5
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 32 VGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARS 91
VGV+ GS + G L+ R G + ++ +S ++ AF Y V + R
Sbjct: 138 VGVLLGS---------FVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRL 188
Query: 92 LQGIGSSCSSVSGMGMLAE 110
L G+G V + + E
Sbjct: 189 LVGMGIGGIWVQAVVLNTE 207
>gnl|CDD|236700 PRK10489, PRK10489, enterobactin exporter EntS; Provisional.
Length = 417
Score = 28.8 bits (65), Expect = 5.6
Identities = 32/143 (22%), Positives = 53/143 (37%), Gaps = 1/143 (0%)
Query: 31 AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLAR 90
+G+++ + L G L H L M + FL+ +F + + L
Sbjct: 260 QIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCL 319
Query: 91 SLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKT 150
+L G S+ SS+ +L + PD+ G G+ G IG G + +
Sbjct: 320 ALFGYLSAISSLLQYTLLQTQTPDEM-LGRINGLWTAQNVTGDAIGAALLGGLGAMMTPV 378
Query: 151 APFLILSALALGDGLLQLLLLQP 173
A L G+L LL+L
Sbjct: 379 ASASASGFGLLIIGVLLLLVLGE 401
>gnl|CDD|236856 PRK11128, PRK11128, putative 3-phenylpropionic acid transporter;
Provisional.
Length = 382
Score = 28.7 bits (65), Expect = 5.8
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 318 YGSVYAIGDVAFCLGFAIGPAMSGTLVNTIGFEWMLFIIAILDFMYAPLLYLLRNP---P 374
YG V G +AF IG A++G LV+ G + +L+I+ LL L P P
Sbjct: 130 YGKVRLWGSIAF----VIGSALTGKLVSWFGEQAILWILTAGVASM--LLGQLLRPTIMP 183
Query: 375 TKEEKKVGRQTLINEKSSTLINEKSSVRYI 404
E ++ +++ L+ E + R++
Sbjct: 184 QGESRQ--QESAGWPAWKALLKEPTVWRFL 211
>gnl|CDD|110319 pfam01306, LacY_symp, LacY proton/sugar symporter. This family is
closely related to the sugar transporter family.
Length = 413
Score = 28.6 bits (64), Expect = 6.0
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 33 GVMFGSKAFVQLLANPLVGILTHRVGYSLPMF---TGFVIMFLSTLIFAFGRTYGVLFLA 89
G++F + +L PL G+++ ++G + TG +++F I+ FG L
Sbjct: 46 GIVFSCISLFSILFQPLFGLISDKLGLRKHLLWCITGLLVLFAPFFIYVFGPLLQSNILV 105
Query: 90 RSLQG 94
++ G
Sbjct: 106 GAIVG 110
>gnl|CDD|220700 pfam10337, DUF2422, Protein of unknown function (DUF2422). This is
a family of proteins conserved in fungi. The function is
not known. This family is the C-terminal half of some
member proteins which contain the DUF2421 pfam10334
domain at their N-terminus.
Length = 438
Score = 28.8 bits (65), Expect = 6.7
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 18/67 (26%)
Query: 234 FLPASISYLIGTNLFGPLGHRMGRYLAALLGLLIIGICLMMIPLARNINHLIVPNAGLGF 293
F I +I N+F G + + LGL ++ P GLG
Sbjct: 153 FAFGYIFGIIAANVFLTYGPLLPTFAPGTLGL------TLLKP------------MGLGL 194
Query: 294 AIGMVDS 300
A+ +V S
Sbjct: 195 ALNVVVS 201
>gnl|CDD|182710 PRK10765, PRK10765, nitroreductase A; Provisional.
Length = 240
Score = 28.4 bits (64), Expect = 6.8
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 4/23 (17%)
Query: 285 IVPNAGLGFA----IGMVDSSMM 303
I P+A LG A IG VD+++M
Sbjct: 89 ICPDAQLGLAEQLLIGAVDTAIM 111
>gnl|CDD|224881 COG1970, MscL, Large-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 130
Score = 27.3 bits (61), Expect = 7.6
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 105 MGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGK-TAPFLILSALALGD 163
M ML E + + RGN + LA+GV+IG FG I+ V P + L L
Sbjct: 1 MSMLKE-FKEFALRGNVVD-----LAVGVIIGAAFGKIVTSLVNDIIMPLIGLLVGGLDF 54
Query: 164 GLLQLLLLQPGVV 176
L + L P VV
Sbjct: 55 SNLFITLGIPAVV 67
>gnl|CDD|217407 pfam03176, MMPL, MMPL family. Members of this family are putative
integral membrane proteins from bacteria. Several of the
members are mycobacterial proteins. Many of the proteins
contain two copies of this aligned region. The function
of these proteins is not known, although it has been
suggested that they may be involved in lipid transport.
Length = 332
Score = 28.4 bits (64), Expect = 7.8
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 31 AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLAR 90
A + + A LV IL H +G L + F + L L+ A G Y + ++R
Sbjct: 168 AALLPLLTVGLSLGAAQGLVAILAHILGIGL---STFALNLLVVLLIAVGTDYALFLVSR 224
>gnl|CDD|181371 PRK08306, PRK08306, dipicolinate synthase subunit A; Reviewed.
Length = 296
Score = 28.3 bits (64), Expect = 7.9
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Query: 75 LIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMG 123
L+ FGRT G+ LAR+L+ +G++ + + R R MG
Sbjct: 156 LVLGFGRT-GMT-LARTLKALGANVTVGA-------RKSAHLARITEMG 195
>gnl|CDD|236564 PRK09556, uhpT, sugar phosphate antiporter; Reviewed.
Length = 467
Score = 28.5 bits (64), Expect = 8.1
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 244 GTNLFGPLGHRMGRYLAALLGLLIIGICLMMI 275
GT +FG AAL I ICLM I
Sbjct: 416 GTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447
>gnl|CDD|131765 TIGR02718, sider_RhtX_FptX, siderophore transporter, RhtX/FptX
family. RhtX from Sinorhizobium meliloti 2011 and FptX
from Pseudomonas aeruginosa appear to be single
polypeptide transporters, from the major facilitator
family (see pfam07690) for import of siderophores as a
means to import iron. This function was suggested by
proximity to siderophore biosynthesis genes and then
confirmed by study of knockout and heterologous
expression phenotypes [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 390
Score = 28.3 bits (63), Expect = 9.2
Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 5/137 (3%)
Query: 53 LTHRVGYSLPMFTGFVIMFLSTLIFAFGR-TYGVLFLARSLQGIGSSCSSVSGMGMLAER 111
L R + LPM S + G + + S+ ++ GM AE
Sbjct: 66 LGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEH 125
Query: 112 YPDDR-ERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGLLQLLL 170
+ +GNA + + G+ +G G +++ G+ FL+++ + L L+ +L
Sbjct: 126 FNGRTLAKGNA--VQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLAS-LVCVLW 182
Query: 171 LQPGVVKQEVEPPTLKS 187
L+ V P ++
Sbjct: 183 LKDRAVASPEAPLARRA 199
>gnl|CDD|218836 pfam05977, MFS_3, Transmembrane secretion effector. This is a
family of transport proteins. Members of this family
include a protein responsible for the secretion of the
ferric chelator, enterobactin, and a protein involved in
antibiotic resistance.
Length = 524
Score = 28.1 bits (63), Expect = 9.2
Identities = 16/62 (25%), Positives = 23/62 (37%)
Query: 317 VYGSVYAIGDVAFCLGFAIGPAMSGTLVNTIGFEWMLFIIAILDFMYAPLLYLLRNPPTK 376
V G ++ F G A G + GT+ +G L + A A L LR P +
Sbjct: 340 VVGRALSVYLTVFFGGMAAGSWLWGTVAEALGLTGALLLAAAALLAGAALGLRLRLPEGE 399
Query: 377 EE 378
Sbjct: 400 AA 401
>gnl|CDD|129913 TIGR00833, actII, Transport protein. The
Resistance-Nodulation-Cell Division (RND) Superfamily-
MmpL sub family (TC 2.A.6.5)Characterized members of the
RND superfamily all probably catalyze substrate efflux
via an H+ antiport mechanism. These proteins are found
ubiquitously in bacteria, archaea and eukaryotes. This
sub-family includes the S. coelicolor ActII3 protein,
which may play a role in drug resistance, and the M.
tuberculosis MmpL7 protein, which catalyzes export of an
outer membrane lipid, phthiocerol dimycocerosate
[Transport and binding proteins, Unknown substrate].
Length = 910
Score = 28.4 bits (63), Expect = 9.7
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 45 LANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLAR 90
+A +V +L + T + L+ L+ G Y V R
Sbjct: 213 VAQGIVSLLGIPGLIGVNAQT---TVLLTALVIGAGTDYAVFLTGR 255
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.142 0.423
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,205,254
Number of extensions: 2328373
Number of successful extensions: 4202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4052
Number of HSP's successfully gapped: 305
Length of query: 414
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 315
Effective length of database: 6,546,556
Effective search space: 2062165140
Effective search space used: 2062165140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (26.8 bits)