RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14075
         (414 letters)



>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
           transporter; 3.50A {Escherichia coli}
          Length = 375

 Score = 81.5 bits (202), Expect = 3e-17
 Identities = 58/314 (18%), Positives = 103/314 (32%), Gaps = 16/314 (5%)

Query: 40  AFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSC 99
              QL   P+    + RVG    +  G  I  L+TL+     +  VL  A ++QG+G+  
Sbjct: 49  GVSQLFYGPI----SDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGV 104

Query: 100 SSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSAL 159
             V    +  + Y +  +  +A  +   G+ +  L+ P  GG++       A +L L  L
Sbjct: 105 GGVMARTLPRDLY-ERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163

Query: 160 ALGDGLLQLLLLQPGVVKQEVEPPTLKS---LVMDPYILIAAGAITFANTGIAMLEPSLP 216
             G        +             L S   L  +         +     GIA  E    
Sbjct: 164 CAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSG 223

Query: 217 IWMMDTMGADKWQQGVSFLPASISYLIGTNLFGPLGHRMGRYLAALLGLLIIGICLMMIP 276
           + M   +G       + F+    +   G    G    R    +   +   ++   LM IP
Sbjct: 224 VLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIP 283

Query: 277 LARNINHL---IVPNAGLGFAIGMVDSSMMPELGYLVDIRHTAVYGSVYA-IGDVAFCLG 332
               + ++   +VP A   F  GM+        G +      A  G+  A +G +     
Sbjct: 284 DWFGVMNVWTLLVPAALFFFGAGMLFPLAT--SGAMEPFPFLA--GTAGALVGGLQNIGS 339

Query: 333 FAIGPAMSGTLVNT 346
             +    +      
Sbjct: 340 GVLASLSAMLPQTG 353


>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
           symport, sugar transport, transmembrane, formylation;
           2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
           1pv6_A 2cfp_A 2v8n_A 2y5y_A*
          Length = 417

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 54/365 (14%), Positives = 111/365 (30%), Gaps = 20/365 (5%)

Query: 32  VGVMFGSKAFVQLLANPLVGILTHRVGYS---LPMFTGFVIMFLSTLIFAFGRTYGVLFL 88
            G++F + +   LL  PL G+L+ ++G     L + TG ++MF    IF FG       L
Sbjct: 45  TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNIL 104

Query: 89  ARSLQGIGSSCSSVSGMGMLAERYPDD--RERGNAMGIALGGLALGVLIGPPFGGIMYQF 146
             S+ G        +      E + +   R      G A     +G  +G    GIM+  
Sbjct: 105 VGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI 164

Query: 147 VGKTAPFLILSALALGDGLLQLLLLQPGVVKQEVEPPT----------LKSLVMDPYILI 196
             +   +L      +   LL                               L   P +  
Sbjct: 165 NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWF 224

Query: 197 AAGAITFANTGIAMLEPSLPI---WMMDTMGADKWQQGVSFLPASISYLIGTNLFGPLGH 253
            +  +   +    + +            T        G       +           + +
Sbjct: 225 LSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIIN 284

Query: 254 RMGRYLAALLGLLIIGICLMMIPLARNINHLIVPNAGLGFAIGMVDSSMMPELGYLVDIR 313
           R+G   A LL   I+ + ++    A +   +++      F +  +       +    ++R
Sbjct: 285 RIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR 344

Query: 314 HTAVYGSVYAIGDVAFCLGFAIGPAMSGTLVNTIGFEWMLFIIAILDFMYAPLLYLLRNP 373
            +A    V         L       ++G +  +IGF+    ++ ++   +  +     + 
Sbjct: 345 FSATIYLVCFC--FFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402

Query: 374 PTKEE 378
           P    
Sbjct: 403 PGPLS 407



 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 30/182 (16%), Positives = 60/182 (32%), Gaps = 7/182 (3%)

Query: 203 FANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYLIGTNLFGPLGHRMGR----Y 258
           F   G     P  PIW+ D     K   G+ F   S+  L+   LFG L  ++G      
Sbjct: 20  FFIMGAYF--PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL 77

Query: 259 LAALLGLLIIGICLMMIPLARNINHLIVPNAGLGFAIGMVDSSMMPELGYLVDIRHTAVY 318
                 L++     + I       +++V +   G  +G   ++  P        + +   
Sbjct: 78  WIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAP-AVEAFIEKVSRRS 136

Query: 319 GSVYAIGDVAFCLGFAIGPAMSGTLVNTIGFEWMLFIIAILDFMYAPLLYLLRNPPTKEE 378
              +    +  C+G+A+G ++ G +                  +   L +   + P+   
Sbjct: 137 NFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSAT 196

Query: 379 KK 380
             
Sbjct: 197 VA 198



 Score = 49.9 bits (119), Expect = 7e-07
 Identities = 22/145 (15%), Positives = 51/145 (35%), Gaps = 2/145 (1%)

Query: 29  TKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFL 88
           T+  G +      +         ++ +R+G    +     IM +  +  +F  +   + +
Sbjct: 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVI 317

Query: 89  ARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALG-GLALGVLIGPPFGGIMYQFV 147
            ++L         V     +  ++   R       +       L ++      G MY+ +
Sbjct: 318 LKTLHMFEVPFLLVGCFKYITSQFEV-RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376

Query: 148 GKTAPFLILSALALGDGLLQLLLLQ 172
           G    +L+L  +ALG  L+ +  L 
Sbjct: 377 GFQGAYLVLGLVALGFTLISVFTLS 401


>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
           major facilitator superfamily, secondary active membrane
           transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
          Length = 451

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 47/378 (12%), Positives = 113/378 (29%), Gaps = 45/378 (11%)

Query: 45  LANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGR----TYGVLFLARSLQGIGSSCS 100
            +  ++G ++ R    + +  G ++     L   F      +  V+F+   L G      
Sbjct: 77  FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMG 136

Query: 101 SVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPP-FGGIMYQFVGKTAPFLILSAL 159
                  +   +   +ERG  + +      +G  I P  F   M  F    A   + +  
Sbjct: 137 WPPCGRTMVHWWSQ-KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFC 195

Query: 160 ALGDGLLQLLLL-----QPGVVKQEVE-------------------PPTLKSLVMDPYIL 195
           A+   L    ++       G+   E                        ++ ++ +  + 
Sbjct: 196 AILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLW 255

Query: 196 IAAGAITFANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYL---IGTNLFGPL- 251
             A A  F       +    P ++ +       +         +       GT L G + 
Sbjct: 256 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSS---WAYFLYEYAGIPGTLLCGWMS 312

Query: 252 ----GHRMGRYLAALLGLLIIGICLMMIPLARNINHLIVPNAGLGFAIGMVDSSMMPELG 307
                   G      + L+ I   +  +  A N    ++    +GF I      +     
Sbjct: 313 DKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIG---L 369

Query: 308 YLVDIRHTAVYGSVYAIGD-VAFCLGFAIGPAMSGTLVNTIGFEWMLFIIAILDFMYAPL 366
           + +++      G+         +  G     A+ G  V+  G++    ++     +   L
Sbjct: 370 HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL 429

Query: 367 LYLLRNPPTKEEKKVGRQ 384
           L ++     +  +++ ++
Sbjct: 430 LIVVMIGEKRRHEQLLQE 447



 Score = 34.6 bits (80), Expect = 0.049
 Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 13/164 (7%)

Query: 219 MMDTMGADKWQQGVSFLPASISYLIGTNLFGPLGHRMG-RYLAALLGLLIIGICLMMIPL 277
            +   G  +   G +    SI+Y     + G +  R   R      GL++    ++ +  
Sbjct: 53  YLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLP-AGLILAAAVMLFMGF 111

Query: 278 ARNINHLIVPNAGLGFAIGMVDSSMMPELGYLVDIRHTAVY-----GSVYAIGDVAFCLG 332
                  I     L F  G       P  G  +       +     G + ++ + A  +G
Sbjct: 112 VPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM----VHWWSQKERGGIVSVWNCAHNVG 167

Query: 333 FAIGPAMSGTLVNTI-GFEWMLFIIAILDFMYAPLLYL-LRNPP 374
             I P +    +     +   L++ A    + A   +  +R+ P
Sbjct: 168 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 211


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 44.7 bits (105), Expect = 5e-05
 Identities = 48/279 (17%), Positives = 89/279 (31%), Gaps = 85/279 (30%)

Query: 93   QGIGSSCSSVSGMGM-LAERYP------D--DRERGNAMGIALGGLALGVLIGPP----- 138
            QG     S   GMGM L +         +  D    +  G ++  +   V+  P      
Sbjct: 1624 QG-----SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDI---VINNPVNLTIH 1675

Query: 139  FGGIMYQFVGKTAPFLILSALALGDGLLQLLLLQPGVVKQEVEPPTLKSLVMDPYILIAA 198
            FGG   + + +    +I   +   DG L+        + +E+   +          L++A
Sbjct: 1676 FGGEKGKRIRENYSAMIFETIV--DGKLKTE-----KIFKEINEHSTSYTFRSEKGLLSA 1728

Query: 199  GAITFANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYLIGTNLFGPLGHRMGRY 258
               T   T  A+       +       D   +G+    A+ +           GH +G Y
Sbjct: 1729 ---T-QFTQPALTLMEKAAF------EDLKSKGLIPADATFA-----------GHSLGEY 1767

Query: 259  --LAALLGLLIIGICLMMIPLAR---NINHLIVPNAGLG---FAIGMVDSSMM------- 303
              LA+L  ++ I     ++ +         + VP   LG   + +  ++   +       
Sbjct: 1768 AALASLADVMSIE---SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824

Query: 304  ----------PELGYLVDIRHTAVY---GSVYAI-GDVA 328
                         G+LV+I     Y      Y   GD+ 
Sbjct: 1825 ALQYVVERVGKRTGWLVEI---VNYNVENQQYVAAGDLR 1860



 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 60/337 (17%), Positives = 101/337 (29%), Gaps = 129/337 (38%)

Query: 45  LANPLVGILTHRVGY----------SLPMFTGFVIMFLSTLIFAFG----RTYGVLFLAR 90
           L + L G   H  G           S   F   V   + T++F  G      Y    L  
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI-TVLFFIGVRCYEAYPNTSLPP 321

Query: 91  SL------QGIGSSCS--SVSGMGMLA-ERY--------PDDRERGNAMGIAL--GGLAL 131
           S+         G      S+S +     + Y        P  +     + I+L  G   L
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK----QVEISLVNGAKNL 377

Query: 132 GVLIGPP-------------------------FGG----IMYQFVGKTAPF---LILSAL 159
            V+ GPP                         F         +F+   +PF   L++ A 
Sbjct: 378 -VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS 436

Query: 160 ALGDGLLQLLLLQPGVVKQEVE--PPTLKSLVMDPYILIAAGAITFANTGIAMLEPSLP- 216
            L         +   +VK  V      ++  V D          TF  + + +L  S+  
Sbjct: 437 DL---------INKDLVKNNVSFNAKDIQIPVYD----------TFDGSDLRVLSGSISE 477

Query: 217 --IWMMDTMGADKWQQGVSFLPASISYLIGTNLFGPLGHRMGRYLAALLGLLIIGICLMM 274
             +  +  +    W+    F     ++++    FGP G       A+ LG+L        
Sbjct: 478 RIVDCIIRLPVK-WETTTQF---KATHIL---DFGPGG-------ASGLGVLT------- 516

Query: 275 IPLARNINHLIVPNAGLGFAI---GMVDSSMMPELGY 308
               RN +       G G  +   G +D +   + G+
Sbjct: 517 ---HRNKD-------GTGVRVIVAGTLDINPDDDYGF 543


>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
           transport protein; HET: BNG; 3.14A {Escherichia coli}
           PDB: 3o7p_A*
          Length = 438

 Score = 35.7 bits (82), Expect = 0.027
 Identities = 48/356 (13%), Positives = 97/356 (27%), Gaps = 42/356 (11%)

Query: 44  LLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIF---AFGRTYGVLFLARSLQGIGSSCS 100
            +     GIL  ++ Y   + TG  +  L   +F   A    Y +  +   +   G  C 
Sbjct: 75  FIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCL 134

Query: 101 SVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTA--------- 151
             +    +      +      + +A    + G +I   FG  +                 
Sbjct: 135 ETAANPFVTV-LGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMS 193

Query: 152 -----------------PFLILSALALGDGLLQLLLLQPGVVKQEVEPP-------TLKS 187
                            P++I+ A+ L   LL +L   P +               +L  
Sbjct: 194 PEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSR 253

Query: 188 LVMDPYILIAAGAITFANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYLIGTNL 247
           L    +   A  A              L  + ++ +         ++L  ++        
Sbjct: 254 LARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRF 313

Query: 248 FGPLGHRMGRYLAALLGLLIIGICLMMIPLARNINHLIVPNAGLGFAIGMVDSSMMPELG 307
            G            L    +I + L +I      +  ++        + +   ++   LG
Sbjct: 314 TGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFS-LG 372

Query: 308 YLVDIRHTAVYGSVYAIGDVAFCLGFAIGPAMSGTLVNTIGFEWMLFIIAILDFMY 363
                + T    S      V   +G  I   + G + +  G      +I  L F  
Sbjct: 373 IKNLGQDTKYGSSFI----VMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV 424


>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide
           transport, major facilitator SUPE transporter, MFS;
           3.30A {Streptococcus thermophilus}
          Length = 491

 Score = 32.8 bits (75), Expect = 0.21
 Identities = 37/172 (21%), Positives = 61/172 (35%), Gaps = 6/172 (3%)

Query: 16  VARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVG-ILTHRV-GYSLPMFTGFVIMFLS 73
               +     +    A  +M    + V L     +G  +  R+ G    +F G V++ L 
Sbjct: 41  WFLISTGDLHITRATAASIMAIYASMVYLS--GTIGGFVADRIIGARPAVFWGGVLIMLG 98

Query: 74  TLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYP-DDRERGNAMGIALGGLALG 132
            ++ A       LF +  L  IG+     +   ++   Y   DR R     I + G+ LG
Sbjct: 99  HIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLG 158

Query: 133 VLIGPPFGGIMYQFVGKTAPFLILSALALGDGLLQLLLLQPGVVKQEVEPPT 184
             I P   G   +  G    F  L+A+ +  GLL         +      PT
Sbjct: 159 AFIAPLIVGAAQEAAGYHVAFS-LAAIGMFIGLLVYYFGGKKTLDPHYLRPT 209


>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
           cerevisiae}
          Length = 231

 Score = 30.9 bits (69), Expect = 0.64
 Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 27/91 (29%)

Query: 152 PFL-ILSALALGDGLLQLLLLQPGVVKQEVEPPTLKSLVMDPYILIAAGAITFANTGIAM 210
           P + I+S L L                 + +    K      +++IA     F N  I +
Sbjct: 143 PLIRIVSGLEL----------------SDTKQKGKK------FLVIAYEP--FENIAIEL 178

Query: 211 LEPSLPIWMMDTMGADKWQQGVSFLPASISY 241
             P   I   +    D    GV  L    ++
Sbjct: 179 --PPNEILFSENNDMDNNNDGVDELNKKCTF 207


>1u7g_A Probable ammonium transporter; right handed helical bundle,
           transmembrane helices, ammonia membrane protein, RH
           protein, transport protein; HET: MSE BOG; 1.40A
           {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A*
           1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A*
           3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A
           2nuu_A* 3c1j_A 2npk_A
          Length = 385

 Score = 29.9 bits (68), Expect = 1.6
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 309 LVDIRHTAVYGSVYAIGDVAFCLGFA-IGPA-MSGTLVNTIGFE-WMLFIIAILDFMYAP 365
           L +I  TAV GS+Y    VAF   FA I    + G L   I F   ++F++  L   Y P
Sbjct: 83  LKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIP 142

Query: 366 L 366
           +
Sbjct: 143 I 143


>2xut_A Proton/peptide symporter family protein; transport protein,
           membrane protein, major facilitator super transporter;
           3.62A {Shewanella oneidensis}
          Length = 524

 Score = 29.6 bits (67), Expect = 2.2
 Identities = 22/164 (13%), Positives = 48/164 (29%), Gaps = 18/164 (10%)

Query: 44  LLANPLVGILTHRVGYSLPMFTGFVI----MFLSTLIFAFGRTYGVLFLARSLQGIGSSC 99
             A+  + +L    G ++     F I    MF++T+ F  GR        +    +    
Sbjct: 162 FFASLSMPLLLKNFGAAV----AFGIPGVLMFVATVFFWLGR--------KRYIHMPPEP 209

Query: 100 SSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSAL 159
               G   +       +  G      +  L  GV        I    +       ++  +
Sbjct: 210 KDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVM 269

Query: 160 ALGDGLLQLLLLQPGVVKQEVEPPTLKSLVMDPYILIAAGAITF 203
                   L L +      +     ++S++    +++ A    F
Sbjct: 270 GFVGAGASLQLERARKSHPDAAVDGVRSVLR--ILVLFALVTPF 311


>3hje_A 704AA long hypothetical glycosyltransferase; trehalose
           biosynthesis, maltooligoside trehalose synthase (M
           family 13 glycoside hydrolases; 1.90A {Sulfolobus
           tokodaii str}
          Length = 704

 Score = 28.9 bits (65), Expect = 3.4
 Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 8/70 (11%)

Query: 125 ALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGLLQLLLLQPGV--VKQEVEP 182
            +  L   +     F     +F  K      + +L+L    L++    PGV    Q +E 
Sbjct: 531 KMTYLIDKMFNNEKFMESFLEFESKIDKMGKVKSLSL--VALKITS--PGVADFYQGLEN 586

Query: 183 PTLKSLVMDP 192
                L  DP
Sbjct: 587 FRY-LLT-DP 594


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.142    0.423 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,462,368
Number of extensions: 414072
Number of successful extensions: 1040
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1023
Number of HSP's successfully gapped: 37
Length of query: 414
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 318
Effective length of database: 4,021,377
Effective search space: 1278797886
Effective search space used: 1278797886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.6 bits)