RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14075
(414 letters)
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 70.6 bits (171), Expect = 6e-14
Identities = 45/362 (12%), Positives = 101/362 (27%), Gaps = 20/362 (5%)
Query: 31 AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLAR 90
G++F + + LL PL G+L+ ++G + M + F +L
Sbjct: 44 DTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI 103
Query: 91 SLQGI-----GSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQ 145
+ I C + + A R G A +G +G GIM+
Sbjct: 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT 163
Query: 146 FVGKTAPFLILSALALGDGLLQLLLLQPGVVKQEVEPPTLKS-------------LVMDP 192
+ +L + LL
Sbjct: 164 INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLW 223
Query: 193 YILIAAGAITFANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYLIGTNLFGPLG 252
++ + ++ + T G + +
Sbjct: 224 FLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLII 283
Query: 253 HRMGRYLAALLGLLIIGICLMMIPLARNINHLIVPNAGLGFAIGMVDSSMMPELGYLVDI 312
+R+G A LL I+ + ++ A + +++ F + + + ++
Sbjct: 284 NRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEV 343
Query: 313 RHTAVYGSVYAIGDVAFCLGFAIGPAMSGTLVNTIGFEWMLFIIAILDFMYAPLLYLLRN 372
R +A V L ++G + +IGF+ ++ ++ + + +
Sbjct: 344 RFSATIYLVCFC--FFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401
Query: 373 PP 374
P
Sbjct: 402 GP 403
Score = 47.5 bits (111), Expect = 2e-06
Identities = 22/154 (14%), Positives = 52/154 (33%), Gaps = 2/154 (1%)
Query: 20 NRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF 79
+ T+ G + + ++ +R+G + IM + + +F
Sbjct: 249 SFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF 308
Query: 80 GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALG-GLALGVLIGPP 138
+ + + ++L V + ++ R + L ++
Sbjct: 309 ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-RFSATIYLVCFCFFKQLAMIFMSV 367
Query: 139 FGGIMYQFVGKTAPFLILSALALGDGLLQLLLLQ 172
G MY+ +G +L+L +ALG L+ + L
Sbjct: 368 LAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401
Score = 46.3 bits (108), Expect = 4e-06
Identities = 28/193 (14%), Positives = 55/193 (28%), Gaps = 3/193 (1%)
Query: 191 DPYILIAAGAITFANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYLIGTNLFGP 250
+ + F + P PIW+ D K G+ F S+ L+ LFG
Sbjct: 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGL 65
Query: 251 LGHRMGRYLAALLGLLIIGICLMMIPLARNINHLIVPNAGLGFAIGMVDSSMMPELGYLV 310
L ++G L + + + + L G+ V
Sbjct: 66 LSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAV 125
Query: 311 DIRHTAVY---GSVYAIGDVAFCLGFAIGPAMSGTLVNTIGFEWMLFIIAILDFMYAPLL 367
+ V + + C+G+A+G ++ G + + L
Sbjct: 126 EAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLF 185
Query: 368 YLLRNPPTKEEKK 380
+ + P+
Sbjct: 186 FAKTDAPSSATVA 198
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
coli [TaxId: 562]}
Length = 447
Score = 66.2 bits (160), Expect = 2e-12
Identities = 41/390 (10%), Positives = 114/390 (29%), Gaps = 39/390 (10%)
Query: 32 VGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIF----AFGRTYGVLF 87
+G + + ++G ++ R + + G ++ L + V+F
Sbjct: 61 LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 120
Query: 88 LARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV 147
+ L G + + RG + + +G I P + +
Sbjct: 121 VLLFLCGWFQGMGWPPCGRTMVHWWSQKE-RGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 179
Query: 148 GKTAPFLILSALALGDGLLQLLLLQP-------------------------GVVKQEVEP 182
L + A L + + +
Sbjct: 180 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQ 239
Query: 183 PTLKSLVMDPYILIAAGAITFANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYL 242
++ ++ + + A A F + P ++ + + ++ + +
Sbjct: 240 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGI 299
Query: 243 IGTNLFGPLGHRMGRY-----LAALLGLLIIGICLMMIPLARNINHLIVPNAGLGFAIGM 297
GT L G + ++ R + L+ I + + A N ++ +GF I
Sbjct: 300 PGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 359
Query: 298 VDSSMMPELGYLVDIRHTAVYGSVYAIGD-VAFCLGFAIGPAMSGTLVNTIGFEWMLFII 356
+ + +++ G+ + G A+ G V+ G++ ++
Sbjct: 360 PVMLIGL---HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVM 416
Query: 357 AILDFMYAPLLYLLRNPPTKEEKKVGRQTL 386
+ LL ++ + +++ ++ +
Sbjct: 417 IGGSILAVILLIVVMIGEKRRHEQLLQELV 446
Score = 42.4 bits (98), Expect = 7e-05
Identities = 27/211 (12%), Positives = 58/211 (27%), Gaps = 1/211 (0%)
Query: 193 YILIAAGAITFANTGIAMLEPSLPIWMMDTMGADKWQQGVSFLPASISYLIGTNLFGPLG 252
+ + +A + +L + + G + G + SI+Y + G +
Sbjct: 24 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVS 83
Query: 253 HRMGRYLAALLGLLIIGICLMMIPLARNINHLIVPNAGLGFAIGM-VDSSMMPELGYLVD 311
R + GL++ ++ + I L F G P +V
Sbjct: 84 DRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH 143
Query: 312 IRHTAVYGSVYAIGDVAFCLGFAIGPAMSGTLVNTIGFEWMLFIIAILDFMYAPLLYLLR 371
G + ++ + A +G I P + + + + L
Sbjct: 144 WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM 203
Query: 372 NPPTKEEKKVGRQTLINEKSSTLINEKSSVR 402
T + + NEK+
Sbjct: 204 MRDTPQSCGLPPIEEYKNDYPDDYNEKAEQE 234
>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase
{Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Length = 653
Score = 29.1 bits (65), Expect = 1.0
Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 12/72 (16%)
Query: 125 ALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGLLQLLL--LQPGV--VKQEV 180
+ L F +F K ++ +L+ + L + G+ Q
Sbjct: 534 RVMELVEETFTNKDFIKSFMKFESKIRRIGMIKSLS------LVALKIMSAGIPDFYQGT 587
Query: 181 EPPTLKSLVMDP 192
E L DP
Sbjct: 588 EIWRY-LLT-DP 597
>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein
{Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 180
Score = 27.1 bits (60), Expect = 3.4
Identities = 2/26 (7%), Positives = 7/26 (26%)
Query: 238 SISYLIGTNLFGPLGHRMGRYLAALL 263
++ + + + A L
Sbjct: 109 LVARPLDSGVAVEFADAFVIAFHARL 134
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 363
Score = 26.7 bits (59), Expect = 6.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 206 TGIAMLEPSLPIWMMDTMGAD 226
T +AM+ PSLP W ++ +G D
Sbjct: 32 TNLAMMNPSLPGWKVECVGDD 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.142 0.423
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,510,100
Number of extensions: 70239
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 20
Length of query: 414
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 326
Effective length of database: 1,199,356
Effective search space: 390990056
Effective search space used: 390990056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.1 bits)