BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14077
         (296 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OCR|A Chain A, Crystal Structure Of Aldolase Ii Superfamily Protein From
           Pseudomonas Syringae
 pdb|3OCR|B Chain B, Crystal Structure Of Aldolase Ii Superfamily Protein From
           Pseudomonas Syringae
          Length = 273

 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 1   ARLNVDEEIFLVNPHGLLYNEITASSLVKVDMRGDIIEPVLGLWLS 46
           AR+   +E FL+N  GLL++EITAS+LVKVD+ G I++   GL ++
Sbjct: 60  ARVPGPDEHFLINAFGLLFDEITASNLVKVDIDGTIVDDPTGLGIN 105


>pdb|3MGK|A Chain A, Crystal Structure Of Probable ProteaseAMIDASE FROM
           Clostridium Acetobutylicum Atcc 824
 pdb|3MGK|B Chain B, Crystal Structure Of Probable ProteaseAMIDASE FROM
           Clostridium Acetobutylicum Atcc 824
          Length = 211

 Score = 32.0 bits (71), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 69  KWICEETSSNLWVEANSDAEWVADGS-PTHSSTPVKIDSALQFV 111
           KW+ E+    LWV+   +A WV DG+  T S     ID  L F+
Sbjct: 129 KWVTEQNEDVLWVK---EARWVKDGNIYTSSGVSAGIDMTLGFI 169


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.128    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,123,119
Number of Sequences: 62578
Number of extensions: 291620
Number of successful extensions: 523
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 522
Number of HSP's gapped (non-prelim): 3
length of query: 296
length of database: 14,973,337
effective HSP length: 98
effective length of query: 198
effective length of database: 8,840,693
effective search space: 1750457214
effective search space used: 1750457214
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)