RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14077
         (296 letters)



>d1k0wa_ c.74.1.1 (A:) L-ribulose-5-phosphate 4-epimerase
           {Escherichia coli [TaxId: 562]}
          Length = 223

 Score = 33.7 bits (76), Expect = 0.015
 Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 5/85 (5%)

Query: 6   DEEIFLVNPHGLLYNEITASSLVKVDMRGDIIEPVLGLWLSRVEALALAMVSCITRLQPR 65
           +  +F++ P G+ Y+ +TA  +V V +    +        S            + +  P 
Sbjct: 35  ERGVFVIKPSGVDYSIMTADDMVVVSIETGEVVEGAKKPSSDTP-----THRLLYQAFPS 89

Query: 66  PWSKWICEETSSNLWVEANSDAEWV 90
                      + +W +A       
Sbjct: 90  IGGIVHTHSRHATIWAQAGQSIPAT 114


>d1pvta_ c.74.1.1 (A:) Putative sugar-phosphate aldolase {Thermotoga
           maritima [TaxId: 2336]}
          Length = 232

 Score = 32.1 bits (72), Expect = 0.050
 Identities = 8/69 (11%), Positives = 16/69 (23%), Gaps = 2/69 (2%)

Query: 6   DEEIFLVNPHGLLYNEITASSLVKVDMRGDIIEPVLGLWLSR--VEALALAMVSCITRLQ 63
            E   L+   G    E+         +     +    L  +          ++      +
Sbjct: 56  PEMYLLITATGSRMREVYEDDSKICLLHVLPGKHYEILHGNGKPTSEFPTHLMIHAKFKE 115

Query: 64  PRPWSKWIC 72
             P  K I 
Sbjct: 116 MNPEKKAIV 124


>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean
           (Glycine max), proglycinin [TaxId: 3847]}
          Length = 239

 Score = 29.5 bits (66), Expect = 0.40
 Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 16/111 (14%)

Query: 77  SNLWVEANSDAEWVADGSPTHSSTPVKIDSALQ-FVPKNTNPKEFKKLQQQIKENRR--- 132
              W+  N D   VA      +S   ++D   + F       +EF K QQ+   ++    
Sbjct: 120 VAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKG 179

Query: 133 ---------ADKITSGPQSQLLE---GVSWEEAKKLQDANQSATGDQVILV 171
                       I SG   + LE    V  + AK LQ  N+      ++ V
Sbjct: 180 KHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTV 230


>d1e4cp_ c.74.1.1 (P:) L-fuculose-1-phosphate aldolase
          {Escherichia coli [TaxId: 562]}
          Length = 206

 Score = 27.5 bits (60), Expect = 1.8
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 6  DEEIFLVNPHGLLYNEITASSLVKVDMR 33
           ++  L+ P G+ Y ++T S +V +D  
Sbjct: 34 YQDGMLITPTGIPYEKLTESHIVFIDGN 61


>d1odza_ c.1.8.3 (A:) Mannanase A, ManA {Pseudomonas cellulosa
           (Cellvibrio japonicus) [TaxId: 155077]}
          Length = 381

 Score = 26.2 bits (57), Expect = 4.8
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 111 VPKNTNPKEFKKLQQQIKENRRADKITSGPQSQLLEGVSWEEAKKLQDANQSATGD 166
           V       E + L   ++E R    I  G Q +  +G++       Q    +A GD
Sbjct: 9   VDSQATM-ETRSLFAFMQEQR-RHSIMFGHQHETTQGLTITRTDGTQSDTFNAVGD 62


>d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC,
           N-terminal domain {Neisseria meningitidis [TaxId: 487]}
          Length = 280

 Score = 26.1 bits (56), Expect = 4.9
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 5/29 (17%)

Query: 116 NPKEFKKLQQQIKENRRA-----DKITSG 139
           NP  FK+L+Q     + A     D I +G
Sbjct: 252 NPDTFKELKQGAHALKLARGGKKDTIIAG 280


>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB
           {Bacillus caldotenax [TaxId: 1395]}
          Length = 413

 Score = 25.9 bits (56), Expect = 7.2
 Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 13/79 (16%)

Query: 109 QFVPKNTNPKEFKKLQQQIKENRRADKITSGPQSQLLEGVSWEEAKKLQDANQSATGDQV 168
            + P+   P+   KL   ++   +          Q L G +    K    +N  A  ++ 
Sbjct: 9   PYEPQGDQPQAIAKLVDGLRRGVK---------HQTLLGAT-GTGKTFTISNVIAQVNKP 58

Query: 169 ILVGAASKELKSLAKKLQD 187
            LV A +K    LA +L  
Sbjct: 59  TLVIAHNKT---LAGQLYS 74


>d1e7ua3 d.15.1.5 (A:143-321) Phoshoinositide 3-kinase (PI3K) {Pig
           (Sus scrofa) [TaxId: 9823]}
          Length = 179

 Score = 24.8 bits (54), Expect = 9.8
 Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 3/45 (6%)

Query: 228 FDQMTDQEIEEYKSTVSRKQRGEFSYDDSES---EALSSSAALPP 269
              + D E+E  +  +   +  E +  D +        +S  LP 
Sbjct: 23  VSNVHDDELEFTRRRLVTPRMAEVAGRDPKLYAMHPWVTSKPLPE 67


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.126    0.355 

Gapped
Lambda     K      H
   0.267   0.0433    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,014,959
Number of extensions: 43760
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 12
Length of query: 296
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 211
Effective length of database: 1,240,546
Effective search space: 261755206
Effective search space used: 261755206
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.9 bits)