Query psy14080
Match_columns 113
No_of_seqs 149 out of 1029
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 19:04:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14080.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14080hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05881 Ig1_Necl-2 First (N-te 99.9 3.2E-23 7E-28 129.8 12.5 93 12-106 3-95 (95)
2 cd07701 Ig1_Necl-3 First (N-te 99.9 7.3E-22 1.6E-26 123.5 11.9 93 12-106 3-95 (95)
3 cd05882 Ig1_Necl-1 First (N-te 99.9 1.6E-21 3.4E-26 122.1 12.4 93 12-106 3-95 (95)
4 cd05717 Ig1_Necl-1-3_like Firs 99.8 7.4E-20 1.6E-24 113.7 11.9 93 12-106 3-95 (95)
5 cd05870 Ig5_NCAM-2 Fifth immun 99.8 6.1E-19 1.3E-23 110.3 12.2 96 5-106 2-98 (98)
6 cd05737 Ig_Myomesin_like_C C-t 99.8 2.4E-17 5.2E-22 102.0 12.3 90 7-106 2-92 (92)
7 cd04983 IgV_TCR_alpha_like Imm 99.8 1.6E-17 3.5E-22 105.1 10.8 85 11-95 3-92 (109)
8 cd05891 Ig_M-protein_C C-termi 99.7 7.5E-17 1.6E-21 100.0 11.5 89 8-106 3-92 (92)
9 cd05762 Ig8_MLCK Eighth immuno 99.7 1.3E-16 2.9E-21 100.1 12.2 90 9-109 3-93 (98)
10 cd05732 Ig5_NCAM-1_like Fifth 99.7 1E-16 2.3E-21 99.2 11.3 94 5-106 2-96 (96)
11 cd05747 Ig5_Titin_like M5, fif 99.7 2E-16 4.4E-21 97.7 12.3 89 4-104 2-91 (92)
12 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 2E-16 4.3E-21 97.1 11.9 83 14-106 3-86 (86)
13 cd07706 IgV_TCR_delta Immunogl 99.7 8.7E-17 1.9E-21 103.2 10.6 86 10-95 3-94 (116)
14 cd05726 Ig4_Robo Fhird immunog 99.7 5.6E-17 1.2E-21 99.8 9.2 84 21-110 1-85 (90)
15 cd05716 Ig_pIgR Immunoglobulin 99.7 6.7E-17 1.5E-21 100.8 9.6 81 16-96 2-87 (98)
16 PF07679 I-set: Immunoglobulin 99.7 3.8E-16 8.3E-21 95.2 12.7 87 9-106 3-90 (90)
17 cd04982 IgV_TCR_gamma Immunogl 99.7 6.2E-17 1.3E-21 103.8 9.5 86 10-95 2-99 (116)
18 cd04980 IgV_L_kappa Immunoglob 99.7 1.2E-16 2.6E-21 101.1 10.7 84 9-94 3-92 (106)
19 cd05865 Ig1_NCAM-1 First immun 99.7 1.8E-16 3.8E-21 99.3 11.2 86 13-106 7-95 (96)
20 cd04984 IgV_L_lambda Immunoglo 99.7 6.7E-17 1.5E-21 100.9 9.1 77 16-94 1-84 (98)
21 cd05899 IgV_TCR_beta Immunoglo 99.7 7.7E-17 1.7E-21 102.6 9.4 83 11-95 3-94 (110)
22 cd07700 IgV_CD8_beta Immunoglo 99.7 1.6E-16 3.5E-21 100.9 10.3 79 16-94 1-93 (107)
23 cd05851 Ig3_Contactin-1 Third 99.7 2.4E-16 5.2E-21 97.0 10.1 81 12-107 7-88 (88)
24 cd05866 Ig1_NCAM-2 First immun 99.7 4.9E-16 1.1E-20 96.7 11.2 84 12-106 6-91 (92)
25 cd05852 Ig5_Contactin-1 Fifth 99.7 1.9E-16 4.2E-21 94.4 9.0 72 21-106 1-73 (73)
26 cd04968 Ig3_Contactin_like Thi 99.7 6.6E-16 1.4E-20 94.5 10.8 85 8-107 3-88 (88)
27 cd05892 Ig_Myotilin_C C-termin 99.7 5.6E-16 1.2E-20 92.9 9.9 74 24-106 1-75 (75)
28 cd05775 Ig_SLAM-CD84_like_N N- 99.7 2E-16 4.3E-21 99.1 8.0 88 19-106 2-96 (97)
29 cd05745 Ig3_Peroxidasin Third 99.7 3.8E-16 8.3E-21 92.9 8.6 73 20-106 1-74 (74)
30 cd05878 Ig_Aggrecan_like Immun 99.7 1.2E-15 2.6E-20 97.7 11.2 90 20-109 1-109 (110)
31 cd04981 IgV_H Immunoglobulin ( 99.7 7.3E-16 1.6E-20 99.6 10.3 82 13-94 4-97 (117)
32 cd05715 Ig_P0-like Immunoglobu 99.7 1.6E-15 3.5E-20 97.5 11.8 95 12-106 4-116 (116)
33 cd05877 Ig_LP_like Immunoglobu 99.7 1.4E-15 3E-20 96.0 11.2 89 20-109 1-105 (106)
34 cd05712 Ig_Siglec_N Immunoglob 99.7 1.1E-15 2.5E-20 98.7 11.0 83 12-94 5-101 (119)
35 cd05720 Ig_CD8_alpha Immunoglo 99.7 3.3E-16 7.1E-21 99.2 8.1 76 17-94 2-90 (104)
36 cd04977 Ig1_NCAM-1_like First 99.7 2.8E-15 6E-20 92.9 12.0 85 12-106 6-92 (92)
37 cd05740 Ig_CEACAM_D4 Fourth im 99.7 1.1E-15 2.3E-20 94.8 10.1 83 10-107 7-91 (91)
38 cd05880 Ig_EVA1 Immunoglobulin 99.7 1.7E-15 3.7E-20 97.6 11.4 95 12-106 4-115 (115)
39 cd05714 Ig_CSPGs_LP Immunoglob 99.7 1.4E-15 3E-20 96.2 10.8 89 20-109 1-105 (106)
40 cd05900 Ig_Aggrecan Immunoglob 99.7 1.4E-15 3.1E-20 97.7 10.9 90 20-109 1-111 (112)
41 cd05730 Ig3_NCAM-1_like Third 99.7 2.1E-15 4.6E-20 93.4 10.6 92 5-108 1-94 (95)
42 cd00099 IgV Immunoglobulin var 99.7 1.1E-15 2.5E-20 95.7 9.3 81 16-96 1-90 (105)
43 cd05871 Ig_Semaphorin_classIII 99.7 1.5E-15 3.2E-20 94.2 9.5 85 14-108 4-90 (91)
44 cd07690 Ig1_CD4 First immunogl 99.7 1.1E-15 2.5E-20 95.4 8.9 77 16-94 2-86 (94)
45 cd05765 Ig_3 Subgroup of the i 99.7 1.9E-15 4.1E-20 90.7 9.5 78 21-106 1-81 (81)
46 cd04972 Ig_TrkABC_d4 Fourth do 99.7 5.1E-15 1.1E-19 91.1 11.5 86 10-106 4-90 (90)
47 cd05713 Ig_MOG_like Immunoglob 99.6 2.8E-15 6E-20 93.7 10.3 86 21-106 1-99 (100)
48 cd05867 Ig4_L1-CAM_like Fourth 99.6 2.2E-15 4.8E-20 90.0 9.4 75 21-107 1-76 (76)
49 PF07686 V-set: Immunoglobulin 99.6 3.9E-15 8.4E-20 93.5 11.0 95 12-106 7-114 (114)
50 cd04975 Ig4_SCFR_like Fourth i 99.6 4.4E-15 9.6E-20 93.8 11.1 89 10-107 7-100 (101)
51 cd05893 Ig_Palladin_C C-termin 99.6 2.1E-15 4.6E-20 90.4 9.2 74 24-106 1-75 (75)
52 cd04974 Ig3_FGFR Third immunog 99.6 7.3E-16 1.6E-20 95.0 6.9 82 21-107 1-90 (90)
53 cd05869 Ig5_NCAM-1 Fifth immun 99.6 1E-14 2.2E-19 90.9 12.1 86 15-106 11-97 (97)
54 cd05756 Ig1_IL1R_like First im 99.6 2E-15 4.4E-20 94.1 8.6 82 14-106 7-94 (94)
55 cd04973 Ig1_FGFR First immunog 99.6 4.3E-15 9.3E-20 89.5 9.6 77 14-106 2-79 (79)
56 cd05857 Ig2_FGFR Second immuno 99.6 6.9E-15 1.5E-19 89.1 10.4 82 15-106 3-85 (85)
57 cd05728 Ig4_Contactin-2-like F 99.6 4.9E-15 1.1E-19 90.4 9.4 80 12-106 5-85 (85)
58 cd05744 Ig_Myotilin_C_like Imm 99.6 8.2E-15 1.8E-19 87.6 10.2 74 24-106 1-75 (75)
59 cd05735 Ig8_DSCAM Eight immuno 99.6 1.2E-14 2.7E-19 89.3 11.1 81 21-109 1-84 (88)
60 cd04969 Ig5_Contactin_like Fif 99.6 6.6E-15 1.4E-19 87.2 9.1 72 21-106 1-73 (73)
61 cd05856 Ig2_FGFRL1-like Second 99.6 5.6E-15 1.2E-19 88.5 8.7 79 15-106 3-82 (82)
62 cd05763 Ig_1 Subgroup of the i 99.6 4.2E-15 9.2E-20 88.4 7.9 74 24-107 1-75 (75)
63 cd05858 Ig3_FGFR-2 Third immun 99.6 5.2E-15 1.1E-19 91.1 7.9 82 21-107 1-90 (90)
64 cd05854 Ig6_Contactin-2 Sixth 99.6 2.7E-14 5.9E-19 87.3 10.8 81 22-109 1-84 (85)
65 cd05748 Ig_Titin_like Immunogl 99.6 3E-14 6.4E-19 84.4 10.3 73 23-106 1-74 (74)
66 cd05859 Ig4_PDGFR-alpha Fourth 99.6 2.3E-14 5E-19 90.4 10.4 88 11-107 8-100 (101)
67 cd05724 Ig2_Robo Second immuno 99.6 1.3E-14 2.7E-19 88.0 8.9 81 13-106 3-86 (86)
68 cd05725 Ig3_Robo Third immunog 99.6 9.3E-15 2E-19 85.6 7.9 68 24-106 1-69 (69)
69 cd05743 Ig_Perlecan_D2_like Im 99.6 1.6E-14 3.4E-19 86.8 8.9 68 21-99 1-69 (78)
70 cd05888 Ig1_Nectin-4_like Frst 99.6 2.9E-14 6.2E-19 89.7 10.4 85 23-107 2-100 (100)
71 cd05738 Ig2_RPTP_IIa_LAR_like 99.6 1.7E-14 3.7E-19 85.8 8.4 72 24-107 1-74 (74)
72 cd05764 Ig_2 Subgroup of the i 99.6 2.5E-14 5.5E-19 84.7 9.1 73 21-106 1-74 (74)
73 cd05853 Ig6_Contactin-4 Sixth 99.6 2.2E-14 4.8E-19 88.1 9.0 81 22-109 1-84 (85)
74 cd05868 Ig4_NrCAM Fourth immun 99.6 2.4E-14 5.2E-19 85.7 9.0 75 21-107 1-76 (76)
75 cd05879 Ig_P0 Immunoglobulin ( 99.6 9.6E-14 2.1E-18 89.7 12.3 93 14-106 6-116 (116)
76 cd05741 Ig_CEACAM_D1_like Firs 99.6 1.1E-14 2.4E-19 89.3 7.6 81 21-106 1-92 (92)
77 cd05729 Ig2_FGFR_like Second i 99.6 9.3E-14 2E-18 83.4 11.3 83 14-106 2-85 (85)
78 cd04979 Ig_Semaphorin_C Immuno 99.6 2.7E-14 5.7E-19 87.6 8.6 85 13-109 3-89 (89)
79 cd05723 Ig4_Neogenin Fourth im 99.6 4.2E-14 9.1E-19 83.5 9.0 70 23-106 1-71 (71)
80 cd05734 Ig7_DSCAM Seventh immu 99.6 2.6E-14 5.6E-19 85.8 8.2 77 24-106 1-79 (79)
81 cd05718 Ig1_PVR_like First imm 99.6 8.6E-14 1.9E-18 86.3 10.9 85 22-107 1-98 (98)
82 cd07693 Ig1_Robo First immunog 99.6 7.6E-14 1.7E-18 86.1 10.5 96 5-107 1-100 (100)
83 cd05758 Ig5_KIRREL3-like Fifth 99.6 2.1E-13 4.5E-18 85.1 12.4 91 5-104 2-97 (98)
84 cd04970 Ig6_Contactin_like Six 99.6 1.2E-13 2.7E-18 83.9 10.5 81 22-109 1-84 (85)
85 cd05846 Ig1_MRC-OX-2_like Firs 99.5 7.9E-14 1.7E-18 87.0 9.7 85 21-106 1-96 (97)
86 smart00406 IGv Immunoglobulin 99.5 3.9E-14 8.4E-19 84.3 7.9 70 23-92 1-81 (81)
87 cd04978 Ig4_L1-NrCAM_like Four 99.5 5.8E-14 1.2E-18 83.3 8.0 75 21-107 1-76 (76)
88 cd05760 Ig2_PTK7 Second immuno 99.5 7.3E-14 1.6E-18 83.7 8.5 73 24-108 1-76 (77)
89 cd05876 Ig3_L1-CAM Third immun 99.5 8.9E-14 1.9E-18 82.1 8.0 70 24-107 1-71 (71)
90 cd05902 Ig_Neurocan Immunoglob 99.5 2.1E-13 4.6E-18 87.4 9.7 90 20-109 1-109 (110)
91 cd05746 Ig4_Peroxidasin Fourth 99.5 1.3E-13 2.9E-18 80.8 7.9 67 24-104 1-68 (69)
92 cd05754 Ig3_Perlecan_like Thir 99.5 2.6E-13 5.5E-18 82.5 9.0 80 8-104 3-84 (85)
93 cd05722 Ig1_Neogenin First imm 99.5 4.9E-13 1.1E-17 82.9 10.2 84 11-106 4-95 (95)
94 smart00410 IG_like Immunoglobu 99.5 1.2E-12 2.5E-17 77.1 11.4 83 14-106 2-85 (86)
95 smart00409 IG Immunoglobulin. 99.5 1.2E-12 2.5E-17 77.1 11.4 83 14-106 2-85 (86)
96 cd05863 Ig2_VEGFR-3 Second imm 99.5 2.2E-13 4.7E-18 80.1 7.8 65 24-107 1-66 (67)
97 cd04976 Ig2_VEGFR Second immun 99.5 2.1E-13 4.5E-18 80.6 7.6 68 24-106 1-69 (71)
98 cd05861 Ig1_PDGFR-alphabeta Fr 99.5 4E-13 8.6E-18 81.9 8.9 78 21-107 1-83 (84)
99 cd05848 Ig1_Contactin-5 First 99.5 8.1E-13 1.8E-17 82.1 10.3 80 12-104 7-92 (94)
100 cd05731 Ig3_L1-CAM_like Third 99.5 1.9E-13 4.1E-18 80.0 7.0 70 24-107 1-71 (71)
101 cd05742 Ig1_VEGFR_like First i 99.5 5.9E-13 1.3E-17 80.7 8.9 80 21-106 1-83 (84)
102 cd05873 Ig_Sema4D_like Immunog 99.5 6.2E-13 1.3E-17 81.9 8.9 68 13-95 3-70 (87)
103 cd05849 Ig1_Contactin-1 First 99.5 6.6E-13 1.4E-17 82.5 9.1 83 9-105 4-92 (93)
104 cd05773 Ig8_hNephrin_like Eigh 99.5 2.3E-12 5.1E-17 82.1 11.7 81 20-108 22-106 (109)
105 cd05736 Ig2_Follistatin_like S 99.5 7.5E-13 1.6E-17 78.7 8.8 74 24-108 1-75 (76)
106 cd05901 Ig_Versican Immunoglob 99.5 2.8E-12 6E-17 83.0 11.9 90 20-109 1-116 (117)
107 PHA02987 Ig domain OX-2-like p 99.5 1.7E-12 3.8E-17 89.4 11.1 95 14-110 23-125 (189)
108 cd05850 Ig1_Contactin-2 First 99.4 3.4E-12 7.3E-17 79.3 11.2 84 9-105 4-93 (94)
109 cd05752 Ig1_FcgammaR_like Frst 99.4 9.1E-13 2E-17 79.5 8.2 76 8-106 2-78 (78)
110 cd05864 Ig2_VEGFR-2 Second imm 99.4 7.2E-13 1.6E-17 78.4 7.6 67 24-106 1-70 (70)
111 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 2.1E-12 4.5E-17 76.1 9.0 68 21-105 1-69 (69)
112 cd07702 Ig2_VEGFR-1 Second imm 99.4 8.3E-13 1.8E-17 78.7 6.5 69 24-106 1-72 (72)
113 cd05855 Ig_TrkB_d5 Fifth domai 99.4 3.9E-12 8.4E-17 77.1 8.9 71 26-105 3-77 (79)
114 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 8.4E-12 1.8E-16 75.7 9.6 72 25-105 2-79 (81)
115 cd05721 IgV_CTLA-4 Immunoglobu 99.4 6.8E-12 1.5E-16 80.7 9.0 78 16-93 8-94 (115)
116 KOG3513|consensus 99.4 2.4E-12 5.3E-17 106.3 8.7 91 5-109 425-516 (1051)
117 PF00047 ig: Immunoglobulin do 99.4 6.9E-12 1.5E-16 71.9 8.1 63 21-92 1-64 (64)
118 cd05887 Ig1_Nectin-3_like Firs 99.4 1.4E-11 3.1E-16 77.1 10.1 85 22-107 1-96 (96)
119 cd05774 Ig_CEACAM_D1 First imm 99.4 8E-12 1.7E-16 79.5 9.0 85 17-106 9-105 (105)
120 cd05895 Ig_Pro_neuregulin-1 Im 99.4 1.1E-11 2.4E-16 73.7 8.8 73 24-103 1-75 (76)
121 PHA03376 BARF1; Provisional 99.4 1.1E-11 2.4E-16 85.8 9.9 83 11-95 16-109 (221)
122 cd05898 Ig5_KIRREL3 Fifth immu 99.3 5.1E-11 1.1E-15 74.9 12.0 92 5-105 2-98 (98)
123 cd05845 Ig2_L1-CAM_like Second 99.3 3.1E-12 6.7E-17 80.0 6.3 74 8-94 5-80 (95)
124 cd05749 Ig2_Tyro3_like Second 99.3 9.6E-12 2.1E-16 75.6 8.3 76 10-104 2-80 (81)
125 cd05757 Ig2_IL1R_like Second i 99.3 1.1E-11 2.4E-16 77.0 8.3 77 16-107 5-91 (92)
126 cd05886 Ig1_Nectin-1_like Firs 99.3 4.5E-11 9.8E-16 75.2 10.8 83 23-106 2-98 (99)
127 cd05889 Ig1_DNAM-1_like First 99.3 4.4E-11 9.6E-16 74.9 10.3 85 22-107 1-94 (96)
128 PHA02826 IL-1 receptor-like pr 99.3 1.2E-11 2.5E-16 88.4 8.4 89 14-108 30-134 (227)
129 cd05753 Ig2_FcgammaR_like Seco 99.3 5.3E-12 1.2E-16 76.8 5.7 71 17-106 10-83 (83)
130 cd05750 Ig_Pro_neuregulin Immu 99.3 3.9E-11 8.5E-16 70.7 8.9 70 25-103 2-74 (75)
131 smart00408 IGc2 Immunoglobulin 99.3 3.6E-11 7.7E-16 67.1 7.7 60 20-94 1-60 (63)
132 cd05727 Ig2_Contactin-2-like S 99.3 1.3E-11 2.9E-16 77.3 6.3 70 14-94 11-81 (96)
133 PHA02826 IL-1 receptor-like pr 99.3 3E-11 6.4E-16 86.3 8.6 79 15-106 138-226 (227)
134 cd05733 Ig6_L1-CAM_like Sixth 99.2 6.5E-11 1.4E-15 70.8 7.7 70 24-104 1-76 (77)
135 KOG3513|consensus 99.2 5.2E-11 1.1E-15 98.6 9.6 93 4-109 330-423 (1051)
136 cd05872 Ig_Sema4B_like Immunog 99.2 7.1E-11 1.5E-15 72.5 7.9 79 14-108 4-84 (85)
137 cd05875 Ig6_hNeurofascin_like 99.2 8.6E-11 1.9E-15 70.5 8.2 70 24-104 1-76 (77)
138 cd05896 Ig1_IL1RAPL-1_like Fir 99.2 1.1E-10 2.3E-15 74.0 8.3 85 14-106 8-104 (104)
139 cd04967 Ig1_Contactin First Ig 99.2 3.5E-10 7.6E-15 69.5 9.9 64 20-96 18-83 (91)
140 cd05874 Ig6_NrCAM Sixth immuno 99.2 1.7E-10 3.7E-15 69.2 7.7 70 24-104 1-76 (77)
141 cd05862 Ig1_VEGFR First immuno 99.2 2.5E-10 5.5E-15 69.8 8.5 82 21-107 1-85 (86)
142 cd05897 Ig2_IL1R2_like Second 99.1 1.9E-10 4.1E-15 71.9 6.5 81 16-108 5-95 (95)
143 KOG4194|consensus 99.1 2.5E-10 5.5E-15 90.5 6.7 91 9-109 615-706 (873)
144 KOG4221|consensus 99.1 6.1E-10 1.3E-14 93.0 8.7 85 12-109 243-328 (1381)
145 PF13895 Ig_2: Immunoglobulin 99.1 3.1E-09 6.8E-14 62.5 9.2 70 16-106 9-80 (80)
146 PHA02785 IL-beta-binding prote 99.0 2.4E-09 5.3E-14 79.9 10.3 84 13-100 227-319 (326)
147 cd05860 Ig4_SCFR Fourth immuno 99.0 6.8E-09 1.5E-13 65.5 10.5 92 8-107 5-100 (101)
148 cd05711 Ig_FcalphaRI Immunoglo 99.0 2E-09 4.4E-14 66.9 7.5 78 16-106 10-94 (94)
149 cd05751 Ig1_LILRB1_like First 99.0 4.9E-09 1.1E-13 64.6 8.0 86 5-106 1-90 (91)
150 PHA02785 IL-beta-binding prote 98.9 4.9E-09 1.1E-13 78.3 8.1 76 17-108 37-118 (326)
151 PF13927 Ig_3: Immunoglobulin 98.8 1.4E-08 2.9E-13 58.8 5.3 58 22-93 16-74 (75)
152 KOG4221|consensus 98.8 2.4E-08 5.2E-13 83.8 8.5 84 14-111 148-233 (1381)
153 cd05759 Ig2_KIRREL3-like Secon 98.8 1.5E-07 3.4E-12 56.4 9.1 76 23-106 1-82 (82)
154 cd07694 Ig2_CD4 Second immunog 98.7 3.4E-07 7.3E-12 56.3 8.4 78 15-109 8-88 (88)
155 cd05885 Ig2_Necl-4 Second immu 98.6 4.8E-07 1E-11 54.9 8.6 74 24-106 2-80 (80)
156 cd00096 Ig Immunoglobulin doma 98.6 9E-08 1.9E-12 53.1 4.9 65 24-95 1-65 (74)
157 KOG4222|consensus 98.5 3.4E-07 7.4E-12 76.7 6.2 75 14-94 323-397 (1281)
158 KOG4222|consensus 98.3 5.1E-07 1.1E-11 75.7 4.4 85 14-112 233-318 (1281)
159 cd00098 IgC Immunoglobulin Con 98.3 3.4E-06 7.3E-11 51.5 6.0 67 20-95 12-84 (95)
160 KOG4194|consensus 98.2 4.6E-06 1E-10 66.8 6.9 69 16-97 716-786 (873)
161 cd05883 Ig2_Necl-2 Second immu 98.2 4.8E-05 1E-09 46.3 9.6 75 24-107 2-80 (82)
162 cd05771 IgC_Tapasin_R Tapasin- 98.2 6E-05 1.3E-09 49.5 10.8 83 4-94 37-129 (139)
163 cd07705 Ig2_Necl-1 Second immu 98.1 5.6E-05 1.2E-09 45.7 9.3 74 24-106 2-83 (83)
164 cd05771 IgC_Tapasin_R Tapasin- 98.1 3.6E-06 7.9E-11 55.3 4.0 36 74-109 2-38 (139)
165 cd05761 Ig2_Necl-1-4_like Seco 98.0 7.2E-05 1.6E-09 45.0 8.0 61 24-93 2-65 (82)
166 cd05755 Ig2_ICAM-1_like Second 97.9 0.0001 2.2E-09 46.4 7.6 70 16-94 11-83 (100)
167 cd07698 IgC_MHC_I_alpha3 Class 97.8 0.00045 9.7E-09 42.4 9.4 62 21-94 14-81 (93)
168 smart00407 IGc1 Immunoglobulin 97.8 0.00047 1E-08 40.7 8.5 63 23-94 1-69 (75)
169 PF11465 Receptor_2B4: Natural 97.7 0.0003 6.5E-09 44.7 7.6 89 15-107 7-107 (108)
170 PF08204 V-set_CD47: CD47 immu 97.7 2.4E-05 5.3E-10 51.4 2.3 87 17-106 23-119 (130)
171 cd05772 IgC_SIRP Signal-regula 97.7 0.0008 1.7E-08 43.0 9.2 69 16-94 16-90 (111)
172 PHA02982 hypothetical protein; 97.6 0.0002 4.3E-09 50.7 6.1 78 15-95 33-122 (251)
173 cd05770 IgC_beta2m Class I maj 97.6 0.0019 4.1E-08 40.1 9.6 64 18-94 12-81 (93)
174 cd07699 IgC_L Immunoglobulin C 97.6 0.00053 1.2E-08 42.9 7.2 66 20-94 16-87 (100)
175 PHA02633 hypothetical protein; 97.6 0.00015 3.3E-09 41.7 4.1 38 71-108 16-54 (63)
176 cd05884 Ig2_Necl-3 Second immu 97.5 0.0011 2.3E-08 40.1 7.6 61 24-93 2-66 (83)
177 cd07696 IgC_CH3 CH3 domain (th 97.4 0.0018 4E-08 40.2 7.5 68 19-94 12-84 (96)
178 cd05766 IgC_MHC_II_beta Class 97.4 0.0027 5.8E-08 39.3 8.1 64 19-94 12-81 (94)
179 cd05767 IgC_MHC_II_alpha Class 97.3 0.0077 1.7E-07 37.3 9.6 64 19-94 13-82 (94)
180 PF08205 C2-set_2: CD80-like C 97.2 0.0089 1.9E-07 35.9 9.1 67 21-94 14-82 (89)
181 cd05769 IgC_TCR_beta T cell re 97.2 0.0035 7.7E-08 40.3 7.6 67 20-95 17-91 (115)
182 cd05847 IgC_CH2_IgE CH2 domain 97.1 0.0063 1.4E-07 37.7 8.0 66 21-95 14-85 (94)
183 PF07654 C1-set: Immunoglobuli 97.1 0.0059 1.3E-07 36.5 7.2 63 20-94 7-75 (83)
184 cd07703 Ig2_Nectin-2_like Seco 97.0 0.02 4.4E-07 35.6 9.6 77 21-106 15-95 (95)
185 cd07704 Ig2_Nectin-3-4_like Se 97.0 0.019 4.1E-07 36.0 9.4 87 11-106 6-97 (97)
186 PF07354 Sp38: Zona-pellucida- 97.0 0.0013 2.8E-08 48.0 4.3 48 34-94 11-58 (271)
187 cd07691 Ig_CD3_gamma_delta Imm 96.8 0.0034 7.5E-08 36.9 4.6 49 21-94 6-54 (69)
188 cd07692 Ig_CD3_epsilon Immunog 96.7 0.0088 1.9E-07 34.8 5.8 50 19-93 5-54 (65)
189 PHA02914 Immunoglobulin-like d 96.6 0.014 3E-07 45.1 7.6 82 14-95 272-368 (500)
190 cd07697 IgC_TCR_gamma T cell r 96.6 0.041 8.9E-07 34.2 8.5 64 21-95 16-84 (96)
191 cd05768 IgC_CH4 CH4 domain (fo 96.6 0.014 3E-07 36.6 6.3 66 20-94 15-89 (102)
192 KOG4597|consensus 96.5 0.0038 8.2E-08 49.0 4.3 82 17-106 207-291 (560)
193 cd04986 IgC_CH2 CH2 domain (se 96.2 0.044 9.5E-07 34.4 7.1 68 20-95 18-88 (99)
194 cd04985 IgC_CH1 CH1 domain (fi 96.0 0.052 1.1E-06 33.6 6.7 67 20-96 15-87 (95)
195 cd05719 Ig2_PVR_like Second im 96.0 0.18 3.8E-06 31.2 9.0 77 21-106 15-95 (95)
196 PHA03042 CD47-like protein; Pr 95.5 0.14 3.1E-06 37.7 8.1 57 20-94 30-91 (286)
197 KOG1480|consensus 95.4 0.006 1.3E-07 50.3 1.0 78 17-108 140-222 (909)
198 cd07689 Ig2_VCAM-1 Second immu 95.1 0.19 4.1E-06 31.6 6.7 25 18-42 12-39 (99)
199 PHA03240 envelope glycoprotein 95.0 0.043 9.4E-07 39.1 4.2 87 15-106 32-143 (258)
200 KOG3515|consensus 94.8 0.035 7.6E-07 45.9 3.7 63 15-93 16-79 (741)
201 PF06328 Lep_receptor_Ig: Ig-l 93.2 1.2 2.5E-05 27.3 7.6 65 16-93 13-82 (89)
202 PF12988 DUF3872: Domain of un 93.0 0.38 8.2E-06 31.9 5.3 61 17-81 43-109 (137)
203 PHA03282 envelope glycoprotein 92.9 0.19 4.2E-06 39.6 4.4 42 59-106 116-160 (540)
204 PHA03189 UL14 tegument protein 90.2 5.7 0.00012 30.0 9.4 81 13-94 59-154 (348)
205 PHA03052 Hypothetical protein; 89.2 0.91 2E-05 26.6 3.7 28 15-42 6-36 (69)
206 PF01688 Herpes_gI: Alphaherpe 89.1 1.1 2.4E-05 30.6 4.7 26 70-95 121-146 (161)
207 PF06214 SLAM: Signaling lymph 88.7 0.38 8.2E-06 31.0 2.1 73 16-92 35-122 (126)
208 PHA02914 Immunoglobulin-like d 87.9 0.97 2.1E-05 35.3 4.2 88 14-106 19-116 (500)
209 PHA03282 envelope glycoprotein 87.1 1.1 2.3E-05 35.7 4.1 27 70-96 330-356 (540)
210 PHA02865 MHC-like TNF binding 86.2 4.3 9.4E-05 30.9 6.8 21 23-43 216-238 (338)
211 PF02440 Adeno_E3_CR1: Adenovi 84.2 2.6 5.7E-05 24.3 3.8 15 72-86 49-63 (63)
212 PHA03273 envelope glycoprotein 82.2 12 0.00025 29.9 7.8 35 72-106 197-232 (486)
213 KOG3515|consensus 79.3 5.5 0.00012 33.5 5.4 71 17-94 108-184 (741)
214 PHA03290 envelope glycoprotein 79.3 4.7 0.0001 30.7 4.7 27 70-96 126-152 (357)
215 KOG3611|consensus 78.5 4.7 0.0001 33.9 4.9 63 23-94 571-633 (737)
216 PHA03286 envelope glycoprotein 78.1 3.6 7.7E-05 32.6 3.9 23 74-96 308-330 (492)
217 PF02480 Herpes_gE: Alphaherpe 77.2 2.4 5.1E-05 33.4 2.7 28 70-97 266-293 (439)
218 PHA03289 envelope glycoprotein 77.1 6.1 0.00013 30.0 4.7 26 70-95 119-144 (352)
219 PHA03292 envelope glycoprotein 75.9 6.3 0.00014 30.6 4.5 27 70-96 125-151 (413)
220 PHA03283 envelope glycoprotein 74.7 6.2 0.00013 31.8 4.4 28 69-96 311-338 (542)
221 PHA03283 envelope glycoprotein 69.6 26 0.00056 28.4 6.7 40 70-109 131-171 (542)
222 PHA03269 envelope glycoprotein 68.3 15 0.00033 29.6 5.2 33 60-92 276-308 (566)
223 PF03921 ICAM_N: Intercellular 67.9 26 0.00056 21.6 8.1 76 12-107 9-86 (91)
224 PF05790 C2-set: Immunoglobuli 66.7 25 0.00054 21.0 8.1 33 74-106 44-78 (80)
225 PF02480 Herpes_gE: Alphaherpe 66.5 1.9 4.1E-05 33.9 0.0 40 71-110 87-128 (439)
226 PF15096 G6B: G6B family 66.0 4.8 0.0001 28.3 1.9 29 81-111 82-110 (224)
227 PHA03291 envelope glycoprotein 65.8 10 0.00022 29.3 3.7 27 70-96 126-152 (401)
228 PHA03281 envelope glycoprotein 65.8 11 0.00024 30.7 4.0 27 70-96 472-498 (642)
229 PHA03270 envelope glycoprotein 64.5 71 0.0015 25.4 8.9 19 74-92 183-201 (466)
230 PHA03286 envelope glycoprotein 61.2 32 0.00069 27.5 5.8 41 71-111 125-167 (492)
231 PF12591 DUF3762: Protein of u 61.1 1.2 2.5E-05 26.2 -1.5 32 1-32 4-36 (80)
232 PF10572 UPF0556: Uncharacteri 60.0 24 0.00052 24.0 4.4 38 69-108 58-99 (158)
233 PF01082 Cu2_monooxygen: Coppe 50.5 16 0.00035 23.7 2.3 26 72-97 3-29 (132)
234 PHA03281 envelope glycoprotein 48.8 39 0.00085 27.7 4.5 39 72-110 297-337 (642)
235 PHA03271 envelope glycoprotein 44.0 77 0.0017 25.3 5.4 35 60-94 194-228 (490)
236 PHA03112 IL-18 binding protein 40.4 1.1E+02 0.0024 20.4 6.2 76 18-95 35-118 (141)
237 PF11781 RRN7: RNA polymerase 39.3 14 0.0003 18.7 0.6 10 82-91 20-29 (36)
238 PF11327 DUF3129: Protein of u 38.7 63 0.0014 22.4 3.9 27 69-95 89-115 (184)
239 PF12904 Collagen_bind_2: Puta 31.5 1.3E+02 0.0028 18.5 4.6 41 36-78 49-92 (93)
240 PF10430 Ig_Tie2_1: Tie-2 Ig-l 31.1 72 0.0016 19.8 2.8 12 82-93 72-83 (96)
241 PF03712 Cu2_monoox_C: Copper 30.8 77 0.0017 21.1 3.3 27 14-40 85-112 (156)
242 PF01483 P_proprotein: Proprot 30.5 45 0.00098 19.6 1.9 19 69-87 60-79 (87)
243 COG5475 Uncharacterized small 30.5 1.1E+02 0.0023 17.3 3.4 33 12-44 7-39 (60)
244 PF03607 DCX: Doublecortin; I 29.4 60 0.0013 18.0 2.2 17 76-92 38-55 (60)
245 PF03043 Herpes_UL87: Herpesvi 28.2 37 0.00081 27.6 1.6 20 25-44 355-374 (538)
246 TIGR02375 pseudoazurin pseudoa 27.8 89 0.0019 20.0 3.0 25 5-29 6-30 (116)
247 COG3689 Predicted membrane pro 27.3 42 0.00091 24.8 1.6 31 82-112 206-238 (271)
248 PHA03264 envelope glycoprotein 27.3 2.9E+02 0.0064 21.7 6.1 29 68-96 153-181 (416)
249 PHA03375 hypothetical protein; 23.1 49 0.0011 28.0 1.4 21 24-44 625-645 (844)
250 PF13742 tRNA_anti_2: OB-fold 22.6 1.3E+02 0.0029 18.3 3.1 51 22-82 48-99 (99)
251 COG1570 XseA Exonuclease VII, 22.3 3.4E+02 0.0075 21.7 5.8 61 18-89 46-107 (440)
252 KOG0200|consensus 21.1 68 0.0015 26.2 1.9 24 71-94 11-34 (609)
253 PHA03374 hypothetical protein; 21.0 57 0.0012 27.4 1.4 20 25-44 537-556 (730)
No 1
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.91 E-value=3.2e-23 Score=129.78 Aligned_cols=93 Identities=13% Similarity=0.116 Sum_probs=79.2
Q ss_pred ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080 12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ 91 (113)
Q Consensus 12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 91 (113)
+.+++++.+|++|+|+|++.+.+...++|++.+ ..++.+.......++||.+.+ .+++.|+|+|++++.+|+|.|+|+
T Consensus 3 ~~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~-~~~i~~~~~~~~~d~Rf~~~~-~~~~~~tL~I~~vq~~D~G~Y~Cq 80 (95)
T cd05881 3 VTEDVTVVEGEVAIISCRVKNNDDSVIQLLNPN-RQTIYFRDVRPLKDSRFQLVN-FSSNELRVSLSNVSLSDEGRYFCQ 80 (95)
T ss_pred ccCceEEcCCCcEEEEEEEccCCccEEEEEecC-CcEEEecCccccCCcCEEEEe-CCCCEEEEEECcCCcccCEEEEEE
Confidence 457899999999999999999988899999765 555555555666899999874 356899999999999999999999
Q ss_pred ecCCCCeeEEEEece
Q psy14080 92 AQPYTTTSHSQNAPG 106 (113)
Q Consensus 92 ~~~~~~~s~~~~L~V 106 (113)
+++.|+.+..+.+.|
T Consensus 81 v~t~p~~~~~~~~~~ 95 (95)
T cd05881 81 LYTDPPQEAYTTITV 95 (95)
T ss_pred EEcccCeEEEEEEEC
Confidence 999999988887765
No 2
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.88 E-value=7.3e-22 Score=123.46 Aligned_cols=93 Identities=13% Similarity=0.113 Sum_probs=76.2
Q ss_pred ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080 12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ 91 (113)
Q Consensus 12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 91 (113)
..+++++.+|++|.|.|.+.+.+.+.|.|||.+ ...++.++.....++||.+.. ...+.++|+|++++++|+|.|+|+
T Consensus 3 ~~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~-~~~l~~~~~~~~~~~r~~~~~-~~~~~~sL~I~~v~~~DsG~Y~C~ 80 (95)
T cd07701 3 LTQNVTVVEGGTANLTCRVDQNDNTSLQWSNPA-QQTLYFDDKKALRDNRIELVR-ASWHELSISISDVSLSDEGQYTCS 80 (95)
T ss_pred ccceEEEecCCcEEEEEEEecCCceEEEEeCCC-CeEEEEcCcccccCCCEEEEE-CCCCcEEEEECcCCcccCEEEEEE
Confidence 457899999999999999999999999999754 355555544444678998743 345679999999999999999999
Q ss_pred ecCCCCeeEEEEece
Q psy14080 92 AQPYTTTSHSQNAPG 106 (113)
Q Consensus 92 ~~~~~~~s~~~~L~V 106 (113)
+.+.+..+..++|.|
T Consensus 81 ~~t~~~~~~~~~l~v 95 (95)
T cd07701 81 LFTMPVKTSKAYLTV 95 (95)
T ss_pred eEeecCccEEEEEEC
Confidence 988777788888876
No 3
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.88 E-value=1.6e-21 Score=122.10 Aligned_cols=93 Identities=16% Similarity=0.171 Sum_probs=78.1
Q ss_pred ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080 12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ 91 (113)
Q Consensus 12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 91 (113)
+.+++++.+|++|.|+|.+.+.+.+.|.|+|.. ..++..+......+.||.+.. ...+.++|+|++|+.+|+|.|+|+
T Consensus 3 ~~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~-~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~nV~~~D~G~YtC~ 80 (95)
T cd05882 3 VTQDETVAVGGTVTLKCGVKEHDNSSLQWSNTA-QQTLYFGEKRALRDNRIQLVK-STPTELIISISNVQLSDEGEYTCS 80 (95)
T ss_pred ccccEEEecCCcEEEEEEEeCCCCCeEEEeccC-ccEEEeCCeEEEeCCeEEEEe-CCCceEEEEECCCCcccCEEEEEE
Confidence 567899999999999999999999999999864 445566666666789998764 344679999999999999999999
Q ss_pred ecCCCCeeEEEEece
Q psy14080 92 AQPYTTTSHSQNAPG 106 (113)
Q Consensus 92 ~~~~~~~s~~~~L~V 106 (113)
+.+.+..++.+.|.|
T Consensus 81 ~~t~~~~~~~~~~~v 95 (95)
T cd05882 81 IFTMPVRTAKATVTV 95 (95)
T ss_pred EEeeccccEEEEEEC
Confidence 988888888888765
No 4
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.84 E-value=7.4e-20 Score=113.74 Aligned_cols=93 Identities=14% Similarity=0.147 Sum_probs=72.7
Q ss_pred ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080 12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ 91 (113)
Q Consensus 12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 91 (113)
+.+++++.+|++|+|.|.+.+.+.+.+.|++.. ..++..+......++||.+.. ..++.++|+|.+++.+|+|.|+|+
T Consensus 3 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~-~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~ 80 (95)
T cd05717 3 VTQDVTVVEGGTATLKCRVKNNDNSSLQWSNPN-QQTLYFNDKRALRDNRIQLVN-FSANELSISISNVSLSDEGRYTCS 80 (95)
T ss_pred cCCcEEEcCCCCEEEEEEECCCCCceEEEeCCC-CcEEEeccccccccCcEEEEc-CCCCeeEEEEccCCcccCEEEEEE
Confidence 567889999999999999988888899999754 344443332223468998853 345678999999999999999999
Q ss_pred ecCCCCeeEEEEece
Q psy14080 92 AQPYTTTSHSQNAPG 106 (113)
Q Consensus 92 ~~~~~~~s~~~~L~V 106 (113)
+...+..+..+.|.|
T Consensus 81 ~~~~~~~~~~~~~~v 95 (95)
T cd05717 81 LYTMPVQTAKATVTV 95 (95)
T ss_pred EecCCCceEEEEEEC
Confidence 987666677788766
No 5
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.82 E-value=6.1e-19 Score=110.30 Aligned_cols=96 Identities=20% Similarity=0.212 Sum_probs=73.0
Q ss_pred CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080 5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD 84 (113)
Q Consensus 5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D 84 (113)
++.|.. .+++++.+|++++|.|.+.+.+.+.|.|||+.++..+..+. ...+.||.+.. ..+..+|+|.+++.+|
T Consensus 2 ~p~i~~--~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~--~~~~~r~~v~~--~~~~~~L~I~~v~~~D 75 (98)
T cd05870 2 QPHIIQ--LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGD--KSPDGRIEVKG--QHGESSLHIKDVKLSD 75 (98)
T ss_pred CCEEEe--eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCC--cCcCceEEEee--cCCeeEEEEeeCCcCC
Confidence 444532 56789999999999999999999999999976544332111 12356888752 3356799999999999
Q ss_pred CEEEEEee-cCCCCeeEEEEece
Q psy14080 85 NGTYECQA-QPYTTTSHSQNAPG 106 (113)
Q Consensus 85 ~G~Y~C~~-~~~~~~s~~~~L~V 106 (113)
+|.|+|.+ +..+..+..++|.|
T Consensus 76 ~G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 76 SGRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred CEEEEEEEeccCCcceeEEEEeC
Confidence 99999999 56678888888875
No 6
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.77 E-value=2.4e-17 Score=101.96 Aligned_cols=90 Identities=17% Similarity=0.156 Sum_probs=70.5
Q ss_pred eeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080 7 GILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNG 86 (113)
Q Consensus 7 ~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G 86 (113)
.+....+..+++.+|+++.|.|.+.+.|.+.|.|||.. ..+ ..++|+.+... .....+|.|.+++.+|+|
T Consensus 2 ~~~~~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g--~~l-------~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G 71 (92)
T cd05737 2 RVVGGLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKND--QAL-------ALSDHYNVKVE-QGKYASLTIKGVSSEDSG 71 (92)
T ss_pred ceeccCCceEEEeCCCcEEEEEEEEecCCCeEEEEECC--EEC-------ccCCCEEEEEc-CCCEEEEEEccCChhhCE
Confidence 45566777889999999999999999999999999853 222 23567776532 234568999999999999
Q ss_pred EEEEee-cCCCCeeEEEEece
Q psy14080 87 TYECQA-QPYTTTSHSQNAPG 106 (113)
Q Consensus 87 ~Y~C~~-~~~~~~s~~~~L~V 106 (113)
.|.|.+ +..+..+..+.|.|
T Consensus 72 ~Y~C~a~N~~G~~~~~~~v~v 92 (92)
T cd05737 72 KYGIVVKNKYGGETVDVTVSV 92 (92)
T ss_pred EEEEEEEECCCcceEEEEEeC
Confidence 999999 55678887777765
No 7
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.76 E-value=1.6e-17 Score=105.07 Aligned_cols=85 Identities=14% Similarity=0.046 Sum_probs=64.6
Q ss_pred eecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEe-cce-EEcCCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080 11 AFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTS-GVL-TYTNDARFQVIHTDGSDDWNLQIKFLQKRDN 85 (113)
Q Consensus 11 ~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~-~~~-~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~ 85 (113)
+....+++.+|++|+|+|.+++.+...+.|||+.. ...+.. ... ....++||.+..+...+.++|+|++++.+|+
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds 82 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS 82 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence 34556889999999999999987788999999863 222222 111 1134689988765556899999999999999
Q ss_pred EEEEEeecCC
Q psy14080 86 GTYECQAQPY 95 (113)
Q Consensus 86 G~Y~C~~~~~ 95 (113)
|+|+|++...
T Consensus 83 G~Y~C~~~~~ 92 (109)
T cd04983 83 AVYFCALSES 92 (109)
T ss_pred EEEEEEEecC
Confidence 9999999643
No 8
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.74 E-value=7.5e-17 Score=99.98 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=68.5
Q ss_pred eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEE
Q psy14080 8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGT 87 (113)
Q Consensus 8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~ 87 (113)
+....+..+++.+|+++.|.|.+.+.+.+.+.|||++. .+ ..+.||.+.. .+....+|.|.+++.+|+|.
T Consensus 3 ~~~~~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~--~~-------~~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~ 72 (92)
T cd05891 3 VIGGLPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQ--DI-------ELSEHYSVKL-EQGKYASLTIKGVTSEDSGK 72 (92)
T ss_pred hhccCCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCE--EC-------CCCCCEEEEE-cCCCEEEEEECCCChhhCEE
Confidence 44556678899999999999999998999999999642 11 2356776643 22334689999999999999
Q ss_pred EEEee-cCCCCeeEEEEece
Q psy14080 88 YECQA-QPYTTTSHSQNAPG 106 (113)
Q Consensus 88 Y~C~~-~~~~~~s~~~~L~V 106 (113)
|+|.+ +..+..+..+.|.|
T Consensus 73 Y~C~a~N~~G~~~~~~~v~~ 92 (92)
T cd05891 73 YSINVKNKYGGETVDVTVSV 92 (92)
T ss_pred EEEEEEeCCCceeeEEEEEC
Confidence 99999 45677777777765
No 9
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.73 E-value=1.3e-16 Score=100.08 Aligned_cols=90 Identities=10% Similarity=0.076 Sum_probs=73.2
Q ss_pred eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080 9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY 88 (113)
Q Consensus 9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y 88 (113)
+....+++++..|+++.|.|.+.+.+.+.+.|+|. +..|. .+.|+.+.. ......|.|.+++.+|+|.|
T Consensus 3 ~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kd--g~~l~-------~~~~~~~~~--~~~~s~L~I~~~~~~D~G~Y 71 (98)
T cd05762 3 IIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKF--RKQIQ-------EGEGIKIEN--TENSSKLTITEGQQEHCGCY 71 (98)
T ss_pred eEECCcCEEEECCCEEEEEEEEcccCCCceEEEEC--CEEec-------CCCcEEEEe--cCCeeEEEECCCChhhCEEE
Confidence 34566788999999999999999999999999983 34432 355777663 23567999999999999999
Q ss_pred EEee-cCCCCeeEEEEeceecc
Q psy14080 89 ECQA-QPYTTTSHSQNAPGLGD 109 (113)
Q Consensus 89 ~C~~-~~~~~~s~~~~L~V~g~ 109 (113)
.|.+ +..+..+..+.|.|.+.
T Consensus 72 tc~a~N~~G~~~~~~~l~V~~~ 93 (98)
T cd05762 72 TLEVENKLGSRQAQVNLTVVDK 93 (98)
T ss_pred EEEEEcCCCceeEEEEEEEecC
Confidence 9999 56688888999999864
No 10
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.73 E-value=1e-16 Score=99.22 Aligned_cols=94 Identities=18% Similarity=0.150 Sum_probs=69.6
Q ss_pred CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080 5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD 84 (113)
Q Consensus 5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D 84 (113)
++.|. ...+.++.+|+++.|.|.+.+.+.+.|.|+|.. ..+..+. ...+.|+.+. ......+|.|++++.+|
T Consensus 2 ~P~i~--~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~--~~~~~~~--~~~~~~~~~~--~~~~~~~L~I~~v~~~D 73 (96)
T cd05732 2 QPKIT--YLENQTAVELEQITLTCEAEGDPIPEITWRRAT--RNFSEGD--KSLDGRIVVR--GHARVSSLTLKDVQLTD 73 (96)
T ss_pred Cccce--ecCceeEecCCcEEEEEEEeEcCCCcEEEEECC--cccCCCC--ccccceEEEe--CCccEEEEEECcCCcCc
Confidence 44453 345689999999999999999999999999954 2221110 0124577664 23456799999999999
Q ss_pred CEEEEEee-cCCCCeeEEEEece
Q psy14080 85 NGTYECQA-QPYTTTSHSQNAPG 106 (113)
Q Consensus 85 ~G~Y~C~~-~~~~~~s~~~~L~V 106 (113)
+|.|+|.+ +..+..+..++|.|
T Consensus 74 ~G~Y~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 74 AGRYDCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred CEEeEEEEEeCCCCcEEEEEEeC
Confidence 99999999 56678888888875
No 11
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.73 E-value=2e-16 Score=97.71 Aligned_cols=89 Identities=19% Similarity=0.187 Sum_probs=70.1
Q ss_pred CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080 4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR 83 (113)
Q Consensus 4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 83 (113)
+|+.++.. ++++++.+|+++.|.|.+.+.+.+.+.|+|.+ ..+ ..+.|+.+.. .....+|.|.+++.+
T Consensus 2 ~~~~~~~~-p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g--~~l-------~~~~~~~~~~--~~~~~~L~i~~~~~~ 69 (92)
T cd05747 2 LPATILTK-PRSLTVSEGESARFSCDVDGEPAPTVTWMREG--QII-------VSSQRHQITS--TEYKSTFEISKVQMS 69 (92)
T ss_pred CCCccccc-CccEEEeCCCcEEEEEEEeecCCCEEEEEECC--EEC-------CCCCcEEEEE--cCCeeEEEECCCCcc
Confidence 46666654 46789999999999999999999999999853 222 2356887753 334679999999999
Q ss_pred CCEEEEEee-cCCCCeeEEEEe
Q psy14080 84 DNGTYECQA-QPYTTTSHSQNA 104 (113)
Q Consensus 84 D~G~Y~C~~-~~~~~~s~~~~L 104 (113)
|+|.|.|.+ +..+..+..+.|
T Consensus 70 D~G~Y~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 70 DEGNYTVVVENSEGKQEAQFTL 91 (92)
T ss_pred cCEeEEEEEEcCCCCEeEEEEe
Confidence 999999999 556777777766
No 12
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.73 E-value=2e-16 Score=97.05 Aligned_cols=83 Identities=17% Similarity=0.140 Sum_probs=66.1
Q ss_pred ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-
Q psy14080 14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA- 92 (113)
Q Consensus 14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~- 92 (113)
..+.+.+|+++.|.|.+.+.|.+.|.|+|.+ ..+. ..++|+.+.. .....+|.|.+++.+|+|.|.|.+
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~--~~i~------~~~~r~~~~~--~~~~~~L~I~~~~~~D~G~Y~c~a~ 72 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGD--KAFT------ETEGRVRVES--YKDLSSFVIEGAEREDEGVYTITVT 72 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEECC--EECc------cCCCeEEEEE--cCCeEEEEECCCccCcCEEEEEEEE
Confidence 3578899999999999999999999999843 2221 1245787753 234679999999999999999999
Q ss_pred cCCCCeeEEEEece
Q psy14080 93 QPYTTTSHSQNAPG 106 (113)
Q Consensus 93 ~~~~~~s~~~~L~V 106 (113)
+..+..+..+.|.|
T Consensus 73 N~~G~~~~~~~l~V 86 (86)
T cd05894 73 NPVGEDHASLFVKV 86 (86)
T ss_pred eCCCcEEEEEEEEC
Confidence 56688888888875
No 13
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=99.72 E-value=8.7e-17 Score=103.25 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=64.6
Q ss_pred EeecceEEEecCCcEEEEEEEccC-CCCEEEEEecCCC---eEEEecceEE--cCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080 10 TAFGQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRDW---HILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKFLQKR 83 (113)
Q Consensus 10 ~~~~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~---~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~~ 83 (113)
++..+.+++.+|++|+|+|.++.. ....|.|||+... ..+....... ..++||.+..+...+.++|+|++++++
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~ 82 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE 82 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence 455667889999999999999864 4578999999742 2232211111 235899987555667899999999999
Q ss_pred CCEEEEEeecCC
Q psy14080 84 DNGTYECQAQPY 95 (113)
Q Consensus 84 D~G~Y~C~~~~~ 95 (113)
|+|+|+|++...
T Consensus 83 Dsg~Y~C~~~~~ 94 (116)
T cd07706 83 DSAKYFCALSTL 94 (116)
T ss_pred HCEEEEEEEECC
Confidence 999999999753
No 14
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.72 E-value=5.6e-17 Score=99.85 Aligned_cols=84 Identities=17% Similarity=0.146 Sum_probs=64.4
Q ss_pred CCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCee
Q psy14080 21 AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTS 99 (113)
Q Consensus 21 G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s 99 (113)
|++|+|.|.+.+.+.+.|.|+|.....++... .......||.+.. +.+|+|.+++.+|+|.|+|.+ +..+..+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~-~~~~~~~r~~v~~-----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 74 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSY-QPPQSSSRFSVSQ-----TGDLTITNVQRSDVGYYICQTLNVAGSIL 74 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecc-cCCCCCCeEEECC-----CCeEEEeeCChhhCEEEEEEEEcCCCceE
Confidence 78999999999999999999986433222211 1112356888752 347999999999999999999 5568888
Q ss_pred EEEEeceeccc
Q psy14080 100 HSQNAPGLGDL 110 (113)
Q Consensus 100 ~~~~L~V~g~~ 110 (113)
..+.|.|++..
T Consensus 75 ~~~~l~V~~~~ 85 (90)
T cd05726 75 TKAYLEVTDVI 85 (90)
T ss_pred EEEEEEEeecc
Confidence 89999999864
No 15
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=99.72 E-value=6.7e-17 Score=100.78 Aligned_cols=81 Identities=17% Similarity=0.196 Sum_probs=61.4
Q ss_pred EEEecCCcEEEEEEEcc-CCCCEEEEEecCC---CeEEEe-cceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080 16 STGFLAVFSYSDKTVRD-IVKVRVSWVRRRD---WHILTS-GVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC 90 (113)
Q Consensus 16 ~tv~~G~~a~L~C~v~~-~~~~~V~W~k~~~---~~~l~~-~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 90 (113)
+++.+|++|+|+|.+.. .....+.|||+.. ..++.. +.......+||.+..+..++.++|+|++++.+|+|+|+|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 57889999999999875 3567899999974 233321 111112357998865566788999999999999999999
Q ss_pred eecCCC
Q psy14080 91 QAQPYT 96 (113)
Q Consensus 91 ~~~~~~ 96 (113)
++...+
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 997655
No 16
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.72 E-value=3.8e-16 Score=95.23 Aligned_cols=87 Identities=23% Similarity=0.213 Sum_probs=70.8
Q ss_pred eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080 9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY 88 (113)
Q Consensus 9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y 88 (113)
+.....++.+.+|+++.|.|.+++.+.+.|.|+|. +..+. .+.|+.+... ....+|.|.+++.+|+|.|
T Consensus 3 ~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~--~~~l~-------~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y 71 (90)
T PF07679_consen 3 FTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKN--GRPLT-------SSQRYQIESD--GGSSSLTIKNVTREDAGTY 71 (90)
T ss_dssp EEEESSEEEEETTSEEEEEEEEEESSSSEEEEEET--TEEEE-------SSSSEEEEEE--TTEEEEEESSESGGGSEEE
T ss_pred EEEecCCEEEeCCCEEEEEEEEEeCCCCccccccc--cccee-------eeeeeeeecc--cceeEEccCCCChhhCEEE
Confidence 34445789999999999999999998899999985 44443 4778887643 3788999999999999999
Q ss_pred EEeec-CCCCeeEEEEece
Q psy14080 89 ECQAQ-PYTTTSHSQNAPG 106 (113)
Q Consensus 89 ~C~~~-~~~~~s~~~~L~V 106 (113)
.|.+. ..+..+..++|.|
T Consensus 72 ~C~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 72 TCVASNSSGEATASVNLTV 90 (90)
T ss_dssp EEEEEETTEEEEEEEEEEE
T ss_pred EEEEEECCCEEEEEEEEEC
Confidence 99995 5567778888876
No 17
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=99.72 E-value=6.2e-17 Score=103.78 Aligned_cols=86 Identities=17% Similarity=0.170 Sum_probs=63.9
Q ss_pred EeecceEEEecCCcEEEEEEEcc--CCCCEEEEEecCC---Ce-EEEecc---eEE---cCCCCEEEEEeCCCCcEEEEE
Q psy14080 10 TAFGQISTGFLAVFSYSDKTVRD--IVKVRVSWVRRRD---WH-ILTSGV---LTY---TNDARFQVIHTDGSDDWNLQI 77 (113)
Q Consensus 10 ~~~~~~~tv~~G~~a~L~C~v~~--~~~~~V~W~k~~~---~~-~l~~~~---~~~---~~~~R~~~~~~~~~~~~~L~I 77 (113)
++.+..+++.+|++|+|.|.+++ .+.+.|.|||+.+ +. ++.... ... ....||.+..+..+..++|+|
T Consensus 2 ~Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 81 (116)
T cd04982 2 EQPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTI 81 (116)
T ss_pred CCcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEE
Confidence 34556788999999999999987 5678999999963 22 332211 111 135799987654447899999
Q ss_pred ccCCCCCCEEEEEeecCC
Q psy14080 78 KFLQKRDNGTYECQAQPY 95 (113)
Q Consensus 78 ~~v~~~D~G~Y~C~~~~~ 95 (113)
++++++|+|+|+|++...
T Consensus 82 ~~~~~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 82 QNLEKEDSATYYCAYWES 99 (116)
T ss_pred EECCHHHCEEEEEEEecC
Confidence 999999999999999643
No 18
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=99.72 E-value=1.2e-16 Score=101.08 Aligned_cols=84 Identities=19% Similarity=0.212 Sum_probs=62.6
Q ss_pred eEeecceEEEecCCcEEEEEEEccCC-CCEEEEEecCC---CeEEEecceE--EcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080 9 LTAFGQISTGFLAVFSYSDKTVRDIV-KVRVSWVRRRD---WHILTSGVLT--YTNDARFQVIHTDGSDDWNLQIKFLQK 82 (113)
Q Consensus 9 ~~~~~~~~tv~~G~~a~L~C~v~~~~-~~~V~W~k~~~---~~~l~~~~~~--~~~~~R~~~~~~~~~~~~~L~I~~v~~ 82 (113)
.++.+..+++.+|++|+|+|.+.+.. ...++|||+.. +..+...... ...++||.+. .++..++|+|+++++
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~~~~ 80 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGS--GSGTDFTLTISRVEP 80 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEe--ccCCEEEEEECCCCh
Confidence 45566778999999999999997654 57899999973 2333322111 1234799875 345789999999999
Q ss_pred CCCEEEEEeecC
Q psy14080 83 RDNGTYECQAQP 94 (113)
Q Consensus 83 ~D~G~Y~C~~~~ 94 (113)
+|+|+|+|++..
T Consensus 81 ~Dsg~Y~Ca~~~ 92 (106)
T cd04980 81 EDAAVYYCQQYG 92 (106)
T ss_pred HHCEEEEEEEeC
Confidence 999999999953
No 19
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.72 E-value=1.8e-16 Score=99.30 Aligned_cols=86 Identities=16% Similarity=0.162 Sum_probs=65.2
Q ss_pred cceEEEecCCcEEEEEEEccCCC-CEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080 13 GQISTGFLAVFSYSDKTVRDIVK-VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ 91 (113)
Q Consensus 13 ~~~~tv~~G~~a~L~C~v~~~~~-~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 91 (113)
+.+..+.+|++++|.|.+.+.|. +.|.|+|.++..+.. .+.|+.+.. .+....+|+|.+++++|+|.|.|.
T Consensus 7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~-------~~~r~~v~~-~~~~~~~L~I~~v~~~D~G~YtC~ 78 (96)
T cd05865 7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTP-------NQQRISVVR-NDDYSSTLTIYNANIDDAGIYKCV 78 (96)
T ss_pred CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccc-------cCCeEEEEe-CCCCceEEEEeccChhhCEEEEEE
Confidence 34457889999999999999985 699999854432321 244776653 223457999999999999999999
Q ss_pred ec-CC-CCeeEEEEece
Q psy14080 92 AQ-PY-TTTSHSQNAPG 106 (113)
Q Consensus 92 ~~-~~-~~~s~~~~L~V 106 (113)
+. .. +..+..++|.|
T Consensus 79 A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 79 VSNEDEGESEATVNVKI 95 (96)
T ss_pred EEcCCCCcEEEEEEEEE
Confidence 95 43 78888888877
No 20
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=99.72 E-value=6.7e-17 Score=100.95 Aligned_cols=77 Identities=16% Similarity=0.062 Sum_probs=57.5
Q ss_pred EEEecCCcEEEEEEEccC--CCCEEEEEecCC---Ce-EEEecce-EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080 16 STGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WH-ILTSGVL-TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY 88 (113)
Q Consensus 16 ~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~-~l~~~~~-~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y 88 (113)
+++.+|++|+|.|.++.. ....++||||.+ +. ++..... ....++||.+.. +.+.++|+|++++++|+|+|
T Consensus 1 ~~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~~Dsg~Y 78 (98)
T cd04984 1 LSVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSK--SGNTASLTISGAQTEDEADY 78 (98)
T ss_pred CccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEc--cCCEEEEEECCCChhhCEEE
Confidence 367899999999999865 557899999984 22 2322211 112257999863 44789999999999999999
Q ss_pred EEeecC
Q psy14080 89 ECQAQP 94 (113)
Q Consensus 89 ~C~~~~ 94 (113)
+|++..
T Consensus 79 ~C~~~~ 84 (98)
T cd04984 79 YCQVWD 84 (98)
T ss_pred EEEEcc
Confidence 999964
No 21
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.72 E-value=7.7e-17 Score=102.60 Aligned_cols=83 Identities=14% Similarity=0.066 Sum_probs=62.1
Q ss_pred eecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEE-ecce--E-E--cCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080 11 AFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILT-SGVL--T-Y--TNDARFQVIHTDGSDDWNLQIKFLQ 81 (113)
Q Consensus 11 ~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~-~~~~--~-~--~~~~R~~~~~~~~~~~~~L~I~~v~ 81 (113)
+.+..+++.+|++|+|+|.+.+ +.+.|+|||+.. +..|. .... . . ..++||.+..+ +...++|.|++++
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~~~ 80 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRP-SLTRSSLTIKSAE 80 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECc-CCCccEEEECCCC
Confidence 4566789999999999999988 668899999974 23332 2211 1 1 12579987642 2368999999999
Q ss_pred CCCCEEEEEeecCC
Q psy14080 82 KRDNGTYECQAQPY 95 (113)
Q Consensus 82 ~~D~G~Y~C~~~~~ 95 (113)
++|+|+|+|++...
T Consensus 81 ~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 81 PEDSAVYLCASSLG 94 (110)
T ss_pred hhhCEEEEEEeeCC
Confidence 99999999999653
No 22
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=99.71 E-value=1.6e-16 Score=100.95 Aligned_cols=79 Identities=23% Similarity=0.311 Sum_probs=58.3
Q ss_pred EEEecCCcEEEEEEEccC-CCCEEEEEecCCC---e---E-EEe---cceEEc---CCCCEEEEEeCCCCcEEEEEccCC
Q psy14080 16 STGFLAVFSYSDKTVRDI-VKVRVSWVRRRDW---H---I-LTS---GVLTYT---NDARFQVIHTDGSDDWNLQIKFLQ 81 (113)
Q Consensus 16 ~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~---~---~-l~~---~~~~~~---~~~R~~~~~~~~~~~~~L~I~~v~ 81 (113)
+++.+|++|+|.|.+.+. ....+.||||.++ . . +.. +...+. .++||.+...++.+.++|+|++++
T Consensus 1 ~~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 80 (107)
T cd07700 1 ILVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK 80 (107)
T ss_pred CEEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence 368899999999999763 4568999999853 2 1 111 111221 257998765566778999999999
Q ss_pred CCCCEEEEEeecC
Q psy14080 82 KRDNGTYECQAQP 94 (113)
Q Consensus 82 ~~D~G~Y~C~~~~ 94 (113)
++|+|+|+|+...
T Consensus 81 ~~Dsg~YyCa~~~ 93 (107)
T cd07700 81 PEDSGTYFCMTVG 93 (107)
T ss_pred HHHCEEEEEeEcC
Confidence 9999999999853
No 23
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.70 E-value=2.4e-16 Score=96.97 Aligned_cols=81 Identities=16% Similarity=0.098 Sum_probs=63.3
Q ss_pred ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080 12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ 91 (113)
Q Consensus 12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 91 (113)
...+.++.+|+++.|.|.+.+.|.+.|.|+|.... + ....|+.. .+..|.|.+++.+|+|.|.|.
T Consensus 7 ~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~--~-------~~~~~~~~------~~~~L~I~~v~~~D~G~Y~C~ 71 (88)
T cd05851 7 KFKDTYALKGQNVTLECFALGNPVPVIRWRKILEP--M-------PATAEISM------SGAVLKIFNIQPEDEGTYECE 71 (88)
T ss_pred ccccEEEeCCCcEEEEEEecccCCCEEEEEECCcC--C-------CCCCEEec------CCCEEEECcCChhhCEEEEEE
Confidence 44467899999999999999999999999995421 1 11223332 234899999999999999999
Q ss_pred e-cCCCCeeEEEEecee
Q psy14080 92 A-QPYTTTSHSQNAPGL 107 (113)
Q Consensus 92 ~-~~~~~~s~~~~L~V~ 107 (113)
+ +..+..+..+.|.|+
T Consensus 72 A~N~~G~~~~~~~l~V~ 88 (88)
T cd05851 72 AENIKGKDKHQARVYVQ 88 (88)
T ss_pred EEcCCCceEEEEEEEEC
Confidence 9 566888888888874
No 24
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.70 E-value=4.9e-16 Score=96.66 Aligned_cols=84 Identities=14% Similarity=0.079 Sum_probs=64.1
Q ss_pred ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080 12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ 91 (113)
Q Consensus 12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 91 (113)
..+++.+.+|+++.|.|.+.+.|. .|.|||.++ ..+. ...|+.+.. ++...+|.|.+++.+|+|.|.|.
T Consensus 6 ~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g-~~~~-------~~~r~~~~~--~g~~~~L~I~~v~~~D~G~Y~C~ 74 (92)
T cd05866 6 SLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQG-EKIV-------SSQRVVVQK--EGVRSRLTIYNANIEDAGIYRCQ 74 (92)
T ss_pred EecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCC-eEec-------CCCCEEEEe--CCCeeEEEEecCChHHCEEEEEE
Confidence 345678999999999999999887 899998543 3321 356887752 33456999999999999999999
Q ss_pred ec-CCCC-eeEEEEece
Q psy14080 92 AQ-PYTT-TSHSQNAPG 106 (113)
Q Consensus 92 ~~-~~~~-~s~~~~L~V 106 (113)
+. ..+. ....+.|.|
T Consensus 75 A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 75 ATDAKGQTQEATVVLEI 91 (92)
T ss_pred EEcCCCcEEEEEEEEEE
Confidence 95 4554 367777765
No 25
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.70 E-value=1.9e-16 Score=94.41 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=58.8
Q ss_pred CCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCee
Q psy14080 21 AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTS 99 (113)
Q Consensus 21 G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s 99 (113)
|+++.|.|.+.+.|.+.|.|+|.. ..+. .+.|+.+. .+.+|.|.+++.+|+|.|.|.+ +..+..+
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~--~~l~-------~~~r~~~~-----~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 66 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGT--ELLV-------NNSRISIW-----DDGSLEILNITKLDEGSYTCFAENNRGKAN 66 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCC--Eecc-------cCCCEEEc-----CCCEEEECcCChhHCEEEEEEEECCCCcee
Confidence 789999999999999999999843 2331 35688875 2458999999999999999999 5667888
Q ss_pred EEEEece
Q psy14080 100 HSQNAPG 106 (113)
Q Consensus 100 ~~~~L~V 106 (113)
..+.|.|
T Consensus 67 ~~~~l~~ 73 (73)
T cd05852 67 STGVLSV 73 (73)
T ss_pred EEEEEEC
Confidence 8888875
No 26
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.69 E-value=6.6e-16 Score=94.53 Aligned_cols=85 Identities=18% Similarity=0.190 Sum_probs=65.1
Q ss_pred eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEE
Q psy14080 8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGT 87 (113)
Q Consensus 8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~ 87 (113)
++.....++++.+|+++.|+|.+.+.+.+.|.|+|.+.. +. ...++.. .+..|.|.+++.+|+|.
T Consensus 3 ~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~-~~--------~~~~~~~------~~~~L~i~~v~~~D~G~ 67 (88)
T cd04968 3 IIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGS-MP--------SSAEISM------SGAVLKIPNIQFEDEGT 67 (88)
T ss_pred cEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCc-CC--------CccEEEE------eCCEEEECCCCcccCEE
Confidence 344455778899999999999999999999999985421 11 1222221 25599999999999999
Q ss_pred EEEee-cCCCCeeEEEEecee
Q psy14080 88 YECQA-QPYTTTSHSQNAPGL 107 (113)
Q Consensus 88 Y~C~~-~~~~~~s~~~~L~V~ 107 (113)
|.|.+ +..+..+..++|.|.
T Consensus 68 Y~C~a~N~~G~~~~~~~l~V~ 88 (88)
T cd04968 68 YECEAENIKGKDTHQGRIYVQ 88 (88)
T ss_pred EEEEEEECCCcEEEEEEEEEC
Confidence 99999 566788888888774
No 27
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.69 E-value=5.6e-16 Score=92.94 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=58.2
Q ss_pred EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEEE
Q psy14080 24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHSQ 102 (113)
Q Consensus 24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~~ 102 (113)
+.|.|.+.+.|.|.|.|+|. +..+.. ..+||.+..+ +.+..+|.|++++.+|+|.|.|.+ +..+..+..+
T Consensus 1 v~l~C~v~G~P~P~i~W~k~--~~~i~~------~~~r~~~~~~-~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a 71 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRN--NEMVQY------NTDRISLYQD-NSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHA 71 (75)
T ss_pred CEEEEEEEecCCCeEEEEEC--CEECcC------CCCeEEEEEc-CCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEE
Confidence 57999999999999999984 333321 2458887642 334469999999999999999999 5678888889
Q ss_pred Eece
Q psy14080 103 NAPG 106 (113)
Q Consensus 103 ~L~V 106 (113)
.|.|
T Consensus 72 ~L~V 75 (75)
T cd05892 72 RLDV 75 (75)
T ss_pred EEeC
Confidence 9876
No 28
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=99.68 E-value=2e-16 Score=99.06 Aligned_cols=88 Identities=18% Similarity=0.220 Sum_probs=59.8
Q ss_pred ecCCcEEEEEEEcc-CCCCEEEEEecCCCeEEEecc----eEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080 19 FLAVFSYSDKTVRD-IVKVRVSWVRRRDWHILTSGV----LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93 (113)
Q Consensus 19 ~~G~~a~L~C~v~~-~~~~~V~W~k~~~~~~l~~~~----~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 93 (113)
.+|++|+|+|.+.. .....|.|+|+....++..+. .....+++|+.....+.++++|+|++++.+|+|.|+|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 47999999999976 556789999985444444331 1112233443221123467999999999999999999996
Q ss_pred CC-C-CeeEEEEece
Q psy14080 94 PY-T-TTSHSQNAPG 106 (113)
Q Consensus 94 ~~-~-~~s~~~~L~V 106 (113)
.. + .....+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 44 3 3467777766
No 29
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.68 E-value=3.8e-16 Score=92.87 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=58.3
Q ss_pred cCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCe
Q psy14080 20 LAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTT 98 (113)
Q Consensus 20 ~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~ 98 (113)
+|+++.|.|.+.+.|.+.|.|+|.. ..+ ..+.|+.+. .+.+|.|.+++.+|+|.|.|.+ +..+..
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g--~~~-------~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 66 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGG--SQL-------SVDRRHLVL-----SSGTLRISRVALHDQGQYECQAVNIVGSQ 66 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECC--EEC-------CCCCCeEEc-----cCCeEEEeeCCHHhCEEEEEEEEeCCCce
Confidence 6899999999999999999999843 222 124555543 2458999999999999999999 566888
Q ss_pred eEEEEece
Q psy14080 99 SHSQNAPG 106 (113)
Q Consensus 99 s~~~~L~V 106 (113)
+..++|.|
T Consensus 67 ~~~~~L~V 74 (74)
T cd05745 67 RTVAQLTV 74 (74)
T ss_pred eEEEEEeC
Confidence 88888876
No 30
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=99.68 E-value=1.2e-15 Score=97.66 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=64.8
Q ss_pred cCCcEEEEEEEccCC----------CCEEEEEecCC---CeEEE-ecceE-Ec--CCCCEEEEEe-CCCCcEEEEEccCC
Q psy14080 20 LAVFSYSDKTVRDIV----------KVRVSWVRRRD---WHILT-SGVLT-YT--NDARFQVIHT-DGSDDWNLQIKFLQ 81 (113)
Q Consensus 20 ~G~~a~L~C~v~~~~----------~~~V~W~k~~~---~~~l~-~~~~~-~~--~~~R~~~~~~-~~~~~~~L~I~~v~ 81 (113)
+|++|+|+|.++... ...|.|||+.. ..++. .+... .. -.+|+.+..+ .+.+..+|+|++++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 489999999997543 36799999853 22222 22221 11 1358877532 34678899999999
Q ss_pred CCCCEEEEEeecCC-CCeeEEEEeceecc
Q psy14080 82 KRDNGTYECQAQPY-TTTSHSQNAPGLGD 109 (113)
Q Consensus 82 ~~D~G~Y~C~~~~~-~~~s~~~~L~V~g~ 109 (113)
.+|+|+|+|.+... ...+..+.|.|.|.
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g~ 109 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTGV 109 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEEE
Confidence 99999999999654 46788899999884
No 31
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=99.68 E-value=7.3e-16 Score=99.59 Aligned_cols=82 Identities=17% Similarity=0.183 Sum_probs=59.7
Q ss_pred cceEEEecCCcEEEEEEEccCC--CCEEEEEecCC---CeEEE-ec---ceE-E--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080 13 GQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRD---WHILT-SG---VLT-Y--TNDARFQVIHTDGSDDWNLQIKFL 80 (113)
Q Consensus 13 ~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~---~~~l~-~~---~~~-~--~~~~R~~~~~~~~~~~~~L~I~~v 80 (113)
+..+++.+|++|+|+|.+++.. ...+.||||.. +.+|. .. ... . ...+||.+..+...+.++|+|+++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 3456788999999999987543 56799999984 23332 11 111 1 124799987655556789999999
Q ss_pred CCCCCEEEEEeecC
Q psy14080 81 QKRDNGTYECQAQP 94 (113)
Q Consensus 81 ~~~D~G~Y~C~~~~ 94 (113)
+++|+|+|+|+...
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 99999999999964
No 32
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=99.68 E-value=1.6e-15 Score=97.54 Aligned_cols=95 Identities=18% Similarity=0.157 Sum_probs=63.3
Q ss_pred ecceEEEecCCcEEEEEEEccCC----CCEEEEEecCCC-----eEEEecc-eEE-cCC----CCEEEEEeCCCCcEEEE
Q psy14080 12 FGQISTGFLAVFSYSDKTVRDIV----KVRVSWVRRRDW-----HILTSGV-LTY-TND----ARFQVIHTDGSDDWNLQ 76 (113)
Q Consensus 12 ~~~~~tv~~G~~a~L~C~v~~~~----~~~V~W~k~~~~-----~~l~~~~-~~~-~~~----~R~~~~~~~~~~~~~L~ 76 (113)
.+..+.+.+|++|+|+|.++... ...|.||++..+ .++.... ... ..+ +|+.+..+...++++|+
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 35567888999999999997542 257999987631 2332221 111 123 45555544556789999
Q ss_pred EccCCCCCCEEEEEeecCCCC---eeEEEEece
Q psy14080 77 IKFLQKRDNGTYECQAQPYTT---TSHSQNAPG 106 (113)
Q Consensus 77 I~~v~~~D~G~Y~C~~~~~~~---~s~~~~L~V 106 (113)
|.+++++|+|+|+|++...+. .+...+|.|
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 116 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLRV 116 (116)
T ss_pred EeeCCcccCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 999999999999999964433 233466654
No 33
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.67 E-value=1.4e-15 Score=96.05 Aligned_cols=89 Identities=19% Similarity=0.137 Sum_probs=63.8
Q ss_pred cCCcEEEEEEEccC------CCCEEEEEecCCC-----eEEEe-cce-EE-c-CCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080 20 LAVFSYSDKTVRDI------VKVRVSWVRRRDW-----HILTS-GVL-TY-T-NDARFQVIHTDGSDDWNLQIKFLQKRD 84 (113)
Q Consensus 20 ~G~~a~L~C~v~~~------~~~~V~W~k~~~~-----~~l~~-~~~-~~-~-~~~R~~~~~~~~~~~~~L~I~~v~~~D 84 (113)
.|++|+|+|.++.. ....|.|||+... .++.. +.. .. . -.+|+.+.. ...++.+|+|++++.+|
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~sL~I~~v~~~D 79 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRR-AHDLDASLVITDLRLED 79 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecC-CCCCcEEEEEccCChHH
Confidence 48999999999765 2467999998631 12222 111 11 1 136887753 34568899999999999
Q ss_pred CEEEEEeecC-CCCeeEEEEeceecc
Q psy14080 85 NGTYECQAQP-YTTTSHSQNAPGLGD 109 (113)
Q Consensus 85 ~G~Y~C~~~~-~~~~s~~~~L~V~g~ 109 (113)
+|+|+|.+.. .+..+..+.|.|.|.
T Consensus 80 sG~Y~C~v~~~~~~~~~~~~l~v~~~ 105 (106)
T cd05877 80 YGRYRCEVIDGLEDESVVVALRLRGV 105 (106)
T ss_pred CEEEEEEEEecccceEEEEEEEEEEE
Confidence 9999999954 467788999999885
No 34
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=99.67 E-value=1.1e-15 Score=98.74 Aligned_cols=83 Identities=13% Similarity=0.155 Sum_probs=60.1
Q ss_pred ecceEEEecCCcEEEEEEEccCC------CCEEEEEecCCC----eEEEe-cceE-E--cCCCCEEEEEeCCCCcEEEEE
Q psy14080 12 FGQISTGFLAVFSYSDKTVRDIV------KVRVSWVRRRDW----HILTS-GVLT-Y--TNDARFQVIHTDGSDDWNLQI 77 (113)
Q Consensus 12 ~~~~~tv~~G~~a~L~C~v~~~~------~~~V~W~k~~~~----~~l~~-~~~~-~--~~~~R~~~~~~~~~~~~~L~I 77 (113)
.++.+.+.+|++|+|+|.+.... ...+.|||+..+ .+... .... . .-.+||++..+...++.+|+|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 35567889999999999886332 356999999843 22221 1111 1 123699987556778899999
Q ss_pred ccCCCCCCEEEEEeecC
Q psy14080 78 KFLQKRDNGTYECQAQP 94 (113)
Q Consensus 78 ~~v~~~D~G~Y~C~~~~ 94 (113)
++++++|+|+|+|.+..
T Consensus 85 ~~l~~~Dsg~Y~C~~~~ 101 (119)
T cd05712 85 SDAQPEDSGKYFFRVEL 101 (119)
T ss_pred ccCChhhCeEEEEEEEc
Confidence 99999999999999954
No 35
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=99.67 E-value=3.3e-16 Score=99.19 Aligned_cols=76 Identities=21% Similarity=0.273 Sum_probs=56.6
Q ss_pred EEecCCcEEEEEEEccCCCCEEEEEecCCC-----eEEE-ec---ceEEc----CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080 17 TGFLAVFSYSDKTVRDIVKVRVSWVRRRDW-----HILT-SG---VLTYT----NDARFQVIHTDGSDDWNLQIKFLQKR 83 (113)
Q Consensus 17 tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~-----~~l~-~~---~~~~~----~~~R~~~~~~~~~~~~~L~I~~v~~~ 83 (113)
++.+|++|+|+|.+.......|+||||.++ ..|. .. ..... ...||.+. ...+.++|+|++++++
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~--~~~~~~~L~I~~~~~s 79 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGS--RSSNSFVLTLKNFQKE 79 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEE--ecCCEEEEEECCCCHH
Confidence 467899999999997766678999999843 2222 21 11111 25788875 3457899999999999
Q ss_pred CCEEEEEeecC
Q psy14080 84 DNGTYECQAQP 94 (113)
Q Consensus 84 D~G~Y~C~~~~ 94 (113)
|+|+|+|++..
T Consensus 80 DsgtY~Ca~~~ 90 (104)
T cd05720 80 NEGYYFCSVAS 90 (104)
T ss_pred HCEEEEEEEcc
Confidence 99999999964
No 36
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.67 E-value=2.8e-15 Score=92.89 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=63.0
Q ss_pred ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080 12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ 91 (113)
Q Consensus 12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 91 (113)
.+.++++.+|+++.|.|.+.+.| +.|.|++.++..+. ..+|+.+.. ......+|+|.+++.+|+|.|.|.
T Consensus 6 ~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~--------~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~ 75 (92)
T cd04977 6 VPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLV--------TQQQISVVQ-NDDVRSTLTIYNANIEDAGIYKCV 75 (92)
T ss_pred ecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEec--------cCCCEEEEe-CCCCEEEEEEecCCcccCEEEEEE
Confidence 34557899999999999999886 48999985543332 234555543 234567999999999999999999
Q ss_pred ecCC--CCeeEEEEece
Q psy14080 92 AQPY--TTTSHSQNAPG 106 (113)
Q Consensus 92 ~~~~--~~~s~~~~L~V 106 (113)
+... ...+.+++|.|
T Consensus 76 A~N~~g~~~~~sv~l~~ 92 (92)
T cd04977 76 ATDAKGTESEATVNLKI 92 (92)
T ss_pred EEcCCCCcceeEEEEEC
Confidence 9543 35577777765
No 37
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.67 E-value=1.1e-15 Score=94.78 Aligned_cols=83 Identities=17% Similarity=0.151 Sum_probs=64.9
Q ss_pred EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080 10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE 89 (113)
Q Consensus 10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 89 (113)
...+++.++.+|++++|.|.+.+. .+.|.|||.. ..+ ..+|+.+.. +..+|.|.+++.+|+|.|.
T Consensus 7 ~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng--~~l--------~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~ 71 (91)
T cd05740 7 NNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNG--SLL--------VPPRLQLSN----DNRTLTFNNVTRSDTGHYQ 71 (91)
T ss_pred ccccCccccccCCcEEEEEEeCCC-CCEEEEEECC--EEC--------CCCCEEEeC----CCCEEEECcCChhhCEEEE
Confidence 566678899999999999999999 8999999843 222 245665542 3458999999999999999
Q ss_pred Eeec-CCC-CeeEEEEecee
Q psy14080 90 CQAQ-PYT-TTSHSQNAPGL 107 (113)
Q Consensus 90 C~~~-~~~-~~s~~~~L~V~ 107 (113)
|.+. ..+ ..+..+.|.|.
T Consensus 72 C~a~N~~G~~~S~~~~L~V~ 91 (91)
T cd05740 72 CEASNEVSNMTSDPYILNVN 91 (91)
T ss_pred EEEEcCCCCEEeeeEEEEeC
Confidence 9994 444 46788888873
No 38
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=99.67 E-value=1.7e-15 Score=97.57 Aligned_cols=95 Identities=17% Similarity=0.052 Sum_probs=63.0
Q ss_pred ecceEEEecCCcEEEEEEEccCC----CCEEEEEecC--C--C-eEEEecce-EEcCC----CCEEEEEeCCCCcEEEEE
Q psy14080 12 FGQISTGFLAVFSYSDKTVRDIV----KVRVSWVRRR--D--W-HILTSGVL-TYTND----ARFQVIHTDGSDDWNLQI 77 (113)
Q Consensus 12 ~~~~~tv~~G~~a~L~C~v~~~~----~~~V~W~k~~--~--~-~~l~~~~~-~~~~~----~R~~~~~~~~~~~~~L~I 77 (113)
.++.+.+.+|++|+|+|.+...+ ...|.||++. + . .++..... ....+ +|+.+..+...++.+|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 45678899999999999997543 2469998763 1 2 23333221 11223 354444445567899999
Q ss_pred ccCCCCCCEEEEEeecCCCC---eeEEEEece
Q psy14080 78 KFLQKRDNGTYECQAQPYTT---TSHSQNAPG 106 (113)
Q Consensus 78 ~~v~~~D~G~Y~C~~~~~~~---~s~~~~L~V 106 (113)
++++++|+|+|+|.+...+. .....+|.|
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 115 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPPDVHGPIGEIRLRV 115 (115)
T ss_pred eeCChhhCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 99999999999999975433 234556554
No 39
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=99.67 E-value=1.4e-15 Score=96.15 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=62.0
Q ss_pred cCCcEEEEEEEccC------CCCEEEEEecC---C-Ce-EEE-ecceE-EcC--CCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080 20 LAVFSYSDKTVRDI------VKVRVSWVRRR---D-WH-ILT-SGVLT-YTN--DARFQVIHTDGSDDWNLQIKFLQKRD 84 (113)
Q Consensus 20 ~G~~a~L~C~v~~~------~~~~V~W~k~~---~-~~-~l~-~~~~~-~~~--~~R~~~~~~~~~~~~~L~I~~v~~~D 84 (113)
.|++|+|+|.+... ....|.|+|+. . .. ++. .+... ... ..|+... ....++.+|+|++++.+|
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~~v~~sD 79 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY-PADPGDASLVITDLRLED 79 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEee-CCCCCcceEEECCCCHHH
Confidence 48999999999754 25699999983 1 22 222 22111 111 1244332 235678999999999999
Q ss_pred CEEEEEeecCC-CCeeEEEEeceecc
Q psy14080 85 NGTYECQAQPY-TTTSHSQNAPGLGD 109 (113)
Q Consensus 85 ~G~Y~C~~~~~-~~~s~~~~L~V~g~ 109 (113)
+|+|+|.+... ...+..+.|.|.|-
T Consensus 80 ~G~Y~C~v~~~~~~~~~~v~L~V~~~ 105 (106)
T cd05714 80 SGRYRCEVIDGIEDEQDTVELEVRGV 105 (106)
T ss_pred CEEEEEEEEcCCCceEEEEEEEEEEE
Confidence 99999999643 56689999999884
No 40
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.67 E-value=1.4e-15 Score=97.74 Aligned_cols=90 Identities=18% Similarity=0.168 Sum_probs=65.5
Q ss_pred cCCcEEEEEEEccCC------------CCEEEEEecCC---CeEEEe-cce-EEc-C-CCCEEEEEe-CCCCcEEEEEcc
Q psy14080 20 LAVFSYSDKTVRDIV------------KVRVSWVRRRD---WHILTS-GVL-TYT-N-DARFQVIHT-DGSDDWNLQIKF 79 (113)
Q Consensus 20 ~G~~a~L~C~v~~~~------------~~~V~W~k~~~---~~~l~~-~~~-~~~-~-~~R~~~~~~-~~~~~~~L~I~~ 79 (113)
+|++++|+|.+.... ...|.|+|+.. ..++.. +.. .+. . .+|+.+... ...++.+|+|+|
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999997543 46899999853 233332 222 121 1 248888532 245789999999
Q ss_pred CCCCCCEEEEEeecCC-CCeeEEEEeceecc
Q psy14080 80 LQKRDNGTYECQAQPY-TTTSHSQNAPGLGD 109 (113)
Q Consensus 80 v~~~D~G~Y~C~~~~~-~~~s~~~~L~V~g~ 109 (113)
++.+|+|+|+|.+... ...+..+.|.|+|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~gv 111 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKGI 111 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEee
Confidence 9999999999999754 56678899999985
No 41
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.66 E-value=2.1e-15 Score=93.39 Aligned_cols=92 Identities=14% Similarity=0.156 Sum_probs=68.8
Q ss_pred CceeeEe-ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080 5 PGGILTA-FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR 83 (113)
Q Consensus 5 p~~i~~~-~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 83 (113)
|+.|... ...++++.+|+++.|.|.+.+.+.+.|.|+|. +..+.. .+.|+.... ....|+|.+++.+
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~--g~~~~~------~~~~~~~~~----~~~~L~I~~v~~~ 68 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKD--GEPIES------GEEKYSFNE----DGSEMTILDVDKL 68 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEEC--CEECcC------CCCEEEEeC----CCCEEEECCCChh
Confidence 4444443 33457899999999999999999999999984 222211 135665432 3457999999999
Q ss_pred CCEEEEEee-cCCCCeeEEEEeceec
Q psy14080 84 DNGTYECQA-QPYTTTSHSQNAPGLG 108 (113)
Q Consensus 84 D~G~Y~C~~-~~~~~~s~~~~L~V~g 108 (113)
|+|.|+|.+ +..+..+..+.|.|..
T Consensus 69 D~G~Y~C~a~N~~G~~~~~~~L~V~~ 94 (95)
T cd05730 69 DEAEYTCIAENKAGEQEAEIHLKVFA 94 (95)
T ss_pred hCEEEEEEEEcCCCeEEEEEEEEEEe
Confidence 999999999 5667888899998864
No 42
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.66 E-value=1.1e-15 Score=95.66 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=60.4
Q ss_pred EEEecCCcEEEEEEEccC-CCCEEEEEecCC---Ce-EEEecce----EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080 16 STGFLAVFSYSDKTVRDI-VKVRVSWVRRRD---WH-ILTSGVL----TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNG 86 (113)
Q Consensus 16 ~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~---~~-~l~~~~~----~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G 86 (113)
+++.+|++|+|+|.+... ....|.|||+.. .. ++..... .....+|+.+..+...+.++|+|++++.+|+|
T Consensus 1 ~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 1 LSVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred CeecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 468899999999999976 677899999864 22 2222111 11235788887654457899999999999999
Q ss_pred EEEEeecCCC
Q psy14080 87 TYECQAQPYT 96 (113)
Q Consensus 87 ~Y~C~~~~~~ 96 (113)
+|+|.+...+
T Consensus 81 ~Y~C~v~~~~ 90 (105)
T cd00099 81 VYYCAVSLSG 90 (105)
T ss_pred EEEEEEecCC
Confidence 9999996544
No 43
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.66 E-value=1.5e-15 Score=94.22 Aligned_cols=85 Identities=16% Similarity=0.274 Sum_probs=61.2
Q ss_pred ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080 14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93 (113)
Q Consensus 14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 93 (113)
..+++.+|++|.|.|... .+.+.|.|||++++..+.. ....+.|+... ...|.|++++++|+|+|+|.+.
T Consensus 4 ~~~~~~eG~~v~L~C~~~-~p~p~v~Wykq~~g~~~~~---~~~~~~r~~~~------~~~L~I~~~~~~DsG~Y~C~a~ 73 (91)
T cd05871 4 KVVYGVENNSTFLECLPK-SPQASVKWLFQRGGDQRKE---EVKTEERLIHT------ERGLLLRSLQRSDAGVYTCTAV 73 (91)
T ss_pred eEEEEecCCcEEEEEECC-CCCceEEEEEECCCCCccc---cccccccEEEe------cCeEEEeeCChhHCEEEEEEEE
Confidence 346789999999999964 7788999999874322110 01234677654 3469999999999999999995
Q ss_pred C--CCCeeEEEEeceec
Q psy14080 94 P--YTTTSHSQNAPGLG 108 (113)
Q Consensus 94 ~--~~~~s~~~~L~V~g 108 (113)
. .......++|.|..
T Consensus 74 ~~~~~~~~~~~~l~v~~ 90 (91)
T cd05871 74 EHSFSQTLAKYTLHVIE 90 (91)
T ss_pred ccCCeEEEEEEEEEEec
Confidence 3 33445678888763
No 44
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.65 E-value=1.1e-15 Score=95.41 Aligned_cols=77 Identities=19% Similarity=0.206 Sum_probs=56.5
Q ss_pred EEEecCCcEEEEEEEccCCCCEEEEEecCC-------CeEEEecceEEcCCCCEEEEEe-CCCCcEEEEEccCCCCCCEE
Q psy14080 16 STGFLAVFSYSDKTVRDIVKVRVSWVRRRD-------WHILTSGVLTYTNDARFQVIHT-DGSDDWNLQIKFLQKRDNGT 87 (113)
Q Consensus 16 ~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~-------~~~l~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~v~~~D~G~ 87 (113)
|.+.+|++|+|+|.+++.+.+.++||+... +.++..+.. ..++||....+ .+++.++|+|++++.+|+|+
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~--~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgt 79 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPS--KLNDRADSRRNLWDQGSFPLIIKNLKIEDSDT 79 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEeccc--ccCCCCceecccCCCCeEEEEECCCCHHHCEE
Confidence 578899999999999988889999994321 222222211 23567776531 14568999999999999999
Q ss_pred EEEeecC
Q psy14080 88 YECQAQP 94 (113)
Q Consensus 88 Y~C~~~~ 94 (113)
|+|.+..
T Consensus 80 Y~C~v~~ 86 (94)
T cd07690 80 YICEVED 86 (94)
T ss_pred EEEEECC
Confidence 9999854
No 45
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.65 E-value=1.9e-15 Score=90.66 Aligned_cols=78 Identities=14% Similarity=0.089 Sum_probs=57.3
Q ss_pred CCcEEEEEEEccCCCCEEEEEecCCC--eEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCC
Q psy14080 21 AVFSYSDKTVRDIVKVRVSWVRRRDW--HILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTT 97 (113)
Q Consensus 21 G~~a~L~C~v~~~~~~~V~W~k~~~~--~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~ 97 (113)
|+++.|.|.+.+.|.+.|.|||+... ..+.... ....++... +..+|.|.+++++|+|+|+|.+ +..+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~---~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 72 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPN---HVRGNVVVT-----NIGQLVIYNAQPQDAGLYTCTARNSGGL 72 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCC---cccCCEEEc-----cccEEEEccCCcccCEEEEEEEecCCce
Confidence 78999999999999999999997521 1111000 011234332 3579999999999999999999 55678
Q ss_pred eeEEEEece
Q psy14080 98 TSHSQNAPG 106 (113)
Q Consensus 98 ~s~~~~L~V 106 (113)
.+..+.|.|
T Consensus 73 ~~~~~~l~v 81 (81)
T cd05765 73 LRANFPLSV 81 (81)
T ss_pred EEEEEEEeC
Confidence 888888876
No 46
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.65 E-value=5.1e-15 Score=91.07 Aligned_cols=86 Identities=15% Similarity=0.122 Sum_probs=64.3
Q ss_pred EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080 10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE 89 (113)
Q Consensus 10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 89 (113)
...+++..+.+|+++.|.|.+.+.|.+.|.|+|.+ ..+. .+.+.... ......+|+|.+++.+|+|.|.
T Consensus 4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g--~~~~-------~~~~~~~~--~~~~~~~L~I~~v~~~D~g~Y~ 72 (90)
T cd04972 4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAG--LIVI-------QTRTDTLE--TTVDIYNLQLSNITSETQTTVT 72 (90)
T ss_pred ccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECC--EEcc-------CCccEEEE--ecCCEEEEEEecCCcccCEEEE
Confidence 34455667899999999999999999999999843 2221 12222222 1234679999999999999999
Q ss_pred Eee-cCCCCeeEEEEece
Q psy14080 90 CQA-QPYTTTSHSQNAPG 106 (113)
Q Consensus 90 C~~-~~~~~~s~~~~L~V 106 (113)
|.+ +..+..+..++|.|
T Consensus 73 C~A~N~~G~~~~~~~L~v 90 (90)
T cd04972 73 CTAENPVGQANVSVQVTV 90 (90)
T ss_pred EEEECCCCceeEEEEEeC
Confidence 999 56678888888875
No 47
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=99.65 E-value=2.8e-15 Score=93.69 Aligned_cols=86 Identities=14% Similarity=0.119 Sum_probs=57.8
Q ss_pred CCcEEEEEEEccC---CCCEEEEEecCCCeEEE--ecc-eEE---c--CCCCEEEEEe-CCCCcEEEEEccCCCCCCEEE
Q psy14080 21 AVFSYSDKTVRDI---VKVRVSWVRRRDWHILT--SGV-LTY---T--NDARFQVIHT-DGSDDWNLQIKFLQKRDNGTY 88 (113)
Q Consensus 21 G~~a~L~C~v~~~---~~~~V~W~k~~~~~~l~--~~~-~~~---~--~~~R~~~~~~-~~~~~~~L~I~~v~~~D~G~Y 88 (113)
|++|+|+|.+... ....|.|+|+....++. ... ... . -.+|+.+... ...++++|+|.+++.+|+|+|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 7899999999733 23479999987433321 111 111 0 1257776431 235679999999999999999
Q ss_pred EEeecCC-CCeeEEEEece
Q psy14080 89 ECQAQPY-TTTSHSQNAPG 106 (113)
Q Consensus 89 ~C~~~~~-~~~s~~~~L~V 106 (113)
+|.+... ...+..+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999744 44566677765
No 48
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.65 E-value=2.2e-15 Score=89.97 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=57.6
Q ss_pred CCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCee
Q psy14080 21 AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTS 99 (113)
Q Consensus 21 G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s 99 (113)
|+++.|.|.+.+.|.+.|.|+|. +..+... ..+.|+.+. +.+|.|.+++.+|+|.|.|.+ +..+..+
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~--g~~i~~~----~~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 68 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSIN--GAPIEGT----DPDPRRHVS------SGALILTDVQPSDTAVYQCEARNRHGNLL 68 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEEC--CEECCCC----CCCceEEee------CCEEEECCCChhhCEEEEEEEECCCCeEE
Confidence 78999999999999999999983 3333211 123455542 458999999999999999999 5567888
Q ss_pred EEEEecee
Q psy14080 100 HSQNAPGL 107 (113)
Q Consensus 100 ~~~~L~V~ 107 (113)
..++|.|.
T Consensus 69 ~~~~l~V~ 76 (76)
T cd05867 69 ANAHVHVV 76 (76)
T ss_pred EEEEEEEC
Confidence 88888873
No 49
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=99.65 E-value=3.9e-15 Score=93.45 Aligned_cols=95 Identities=20% Similarity=0.165 Sum_probs=69.7
Q ss_pred ecceEEEecCCcEEEEEEEc-cCCCCEEEEEecCC---CeEEE--ecc---eEE--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080 12 FGQISTGFLAVFSYSDKTVR-DIVKVRVSWVRRRD---WHILT--SGV---LTY--TNDARFQVIHTDGSDDWNLQIKFL 80 (113)
Q Consensus 12 ~~~~~tv~~G~~a~L~C~v~-~~~~~~V~W~k~~~---~~~l~--~~~---~~~--~~~~R~~~~~~~~~~~~~L~I~~v 80 (113)
....+.+.+|++|.|+|.+. ......+.|+|+.. ...+. ... ... ...+|+.+..+...++++|+|+++
T Consensus 7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l 86 (114)
T PF07686_consen 7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL 86 (114)
T ss_dssp EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence 45668899999999999999 55667999999764 22222 111 111 225788887767778999999999
Q ss_pred CCCCCEEEEEeecCC--CCeeEEEEece
Q psy14080 81 QKRDNGTYECQAQPY--TTTSHSQNAPG 106 (113)
Q Consensus 81 ~~~D~G~Y~C~~~~~--~~~s~~~~L~V 106 (113)
+.+|+|.|+|++... ........|.|
T Consensus 87 ~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 87 QPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp SGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 999999999999654 34456666655
No 50
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.65 E-value=4.4e-15 Score=93.80 Aligned_cols=89 Identities=16% Similarity=0.006 Sum_probs=66.2
Q ss_pred EeecceEEEecCCcEEEEEEEcc-CCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeC---CCCcEEEEEccCCCCCC
Q psy14080 10 TAFGQISTGFLAVFSYSDKTVRD-IVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTD---GSDDWNLQIKFLQKRDN 85 (113)
Q Consensus 10 ~~~~~~~tv~~G~~a~L~C~v~~-~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~~v~~~D~ 85 (113)
...++++.+.+|+++.|.|.+.+ .|.+.+.|+|. +..+. .+.+..+.... .....+|.|.+++++|+
T Consensus 7 ~~~~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kd--g~~i~-------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~ 77 (101)
T cd04975 7 PEQNTTIFVNLGENLNLVVEVEAYPPPPHINWTYD--NRTLT-------NKLTEIVTSENESEYRYVSELKLVRLKESEA 77 (101)
T ss_pred cCCCceEEEECCCCEEEEEEEEecCCCCccEEEeC--CeeCC-------CCcceeEEEeccCcceEEEEEEEeecCHhhC
Confidence 34567789999999999999999 88899999983 43332 12232222110 01246899999999999
Q ss_pred EEEEEee-cCCCCeeEEEEecee
Q psy14080 86 GTYECQA-QPYTTTSHSQNAPGL 107 (113)
Q Consensus 86 G~Y~C~~-~~~~~~s~~~~L~V~ 107 (113)
|.|+|.+ +..+..+..+.|.|.
T Consensus 78 G~Ytc~A~N~~G~~~~t~~L~V~ 100 (101)
T cd04975 78 GTYTFLASNSDASKSLTFELYVN 100 (101)
T ss_pred eeEEEEEECCCccEEEEEEEEEE
Confidence 9999999 566888888888874
No 51
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.65 E-value=2.1e-15 Score=90.36 Aligned_cols=74 Identities=20% Similarity=0.206 Sum_probs=57.1
Q ss_pred EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEEE
Q psy14080 24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHSQ 102 (113)
Q Consensus 24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~~ 102 (113)
++|.|.+.+.|.|.|.|+|.+ ..+. ....|+.+.. .+.+..+|.|.+++++|+|.|.|.+ +..+..+..+
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~--~~l~------~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a 71 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKEN--ESLT------HNTDRVSMHQ-DNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTA 71 (75)
T ss_pred CEEEEEEeEecCCEEEEEECC--EECC------CCCCeEEEEE-cCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEE
Confidence 579999999999999999843 2321 1246777753 2223458999999999999999999 5678888888
Q ss_pred Eece
Q psy14080 103 NAPG 106 (113)
Q Consensus 103 ~L~V 106 (113)
.|.|
T Consensus 72 ~L~V 75 (75)
T cd05893 72 RLDV 75 (75)
T ss_pred EEeC
Confidence 8876
No 52
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.64 E-value=7.3e-16 Score=95.05 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=58.0
Q ss_pred CCcEEEEEEEccCCCCEEEEEecC--CCeEEEecceEEcCCCCEEEEEe-----CCCCcEEEEEccCCCCCCEEEEEee-
Q psy14080 21 AVFSYSDKTVRDIVKVRVSWVRRR--DWHILTSGVLTYTNDARFQVIHT-----DGSDDWNLQIKFLQKRDNGTYECQA- 92 (113)
Q Consensus 21 G~~a~L~C~v~~~~~~~V~W~k~~--~~~~l~~~~~~~~~~~R~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~~- 92 (113)
|++|+|.|.+.+.|.|.|.|+|.. .+..+..+ ..+++.+... .......|.|.+++.+|+|.|.|.+
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 75 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPD-----GLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAG 75 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCC-----CCceEEEEEecCCcccccccceEEEeccccccCcEEEEEee
Confidence 789999999999999999999953 12211111 1122222211 1123468999999999999999999
Q ss_pred cCCCCeeEEEEecee
Q psy14080 93 QPYTTTSHSQNAPGL 107 (113)
Q Consensus 93 ~~~~~~s~~~~L~V~ 107 (113)
+..+..+..+.|.|+
T Consensus 76 N~~G~~~~sa~L~V~ 90 (90)
T cd04974 76 NSIGPSHHSAWLTVL 90 (90)
T ss_pred cccCcccCCEEEEeC
Confidence 566888888999884
No 53
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.64 E-value=1e-14 Score=90.90 Aligned_cols=86 Identities=19% Similarity=0.136 Sum_probs=63.0
Q ss_pred eEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-c
Q psy14080 15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-Q 93 (113)
Q Consensus 15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~ 93 (113)
+..+..|++++|.|.+.+.|.+.|.|+|.. ..+..... ..+.|+.+.. .....+|.|++++.+|+|.|.|.+ +
T Consensus 11 ~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~--~~~~~~~~--~~~~~~~v~~--~~~~~~L~I~~v~~~D~G~Y~C~A~N 84 (97)
T cd05869 11 QTAMELEEQITLTCEASGDPIPSITWRTST--RNISSEEK--TLDGHIVVRS--HARVSSLTLKYIQYTDAGEYLCTASN 84 (97)
T ss_pred ceEEEcCCCEEEEEEeeEeCCCEEEEEECC--ccccCCcc--ccCccEEEEc--CccEEEEEEecCccCcCEEEEEEEec
Confidence 333445899999999999999999999843 22211110 1245666542 234569999999999999999999 5
Q ss_pred CCCCeeEEEEece
Q psy14080 94 PYTTTSHSQNAPG 106 (113)
Q Consensus 94 ~~~~~s~~~~L~V 106 (113)
..+..+..++|.|
T Consensus 85 ~~G~~~~~~~l~v 97 (97)
T cd05869 85 TIGQDSQSMYLEV 97 (97)
T ss_pred CCCCeeEEEEEEC
Confidence 6688888888876
No 54
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.64 E-value=2e-15 Score=94.10 Aligned_cols=82 Identities=11% Similarity=0.027 Sum_probs=60.6
Q ss_pred ceEEEecCCcEEEEEEEcc-----CCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080 14 QISTGFLAVFSYSDKTVRD-----IVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY 88 (113)
Q Consensus 14 ~~~tv~~G~~a~L~C~v~~-----~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y 88 (113)
++..+.+|+++.|.|.+.+ .+.+.|.|||.+....+.. ..+.|+... ..+|.|.+++++|+|.|
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~-----~~~~r~~~~------~~~L~I~~~~~~DsG~Y 75 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPT-----EERSRMHQQ------KDLLWFLPAALEDSGLY 75 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccc-----cccceeeec------CCeEEEccCCcccCeEE
Confidence 4567889999999999998 6788999999753221110 123454332 45899999999999999
Q ss_pred EEeec-CCCCeeEEEEece
Q psy14080 89 ECQAQ-PYTTTSHSQNAPG 106 (113)
Q Consensus 89 ~C~~~-~~~~~s~~~~L~V 106 (113)
+|.+. ..+..+..++|.|
T Consensus 76 ~C~~~N~~g~~~~~~~L~v 94 (94)
T cd05756 76 TCVVRNSTYCMKVSISLTV 94 (94)
T ss_pred EEEEcCCCccEEEEEEEEC
Confidence 99995 4567777788875
No 55
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.63 E-value=4.3e-15 Score=89.52 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=58.2
Q ss_pred ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080 14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93 (113)
Q Consensus 14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 93 (113)
.+.++.+|+++.|.|.+.+. .+.|.|+|.. ..| ..+.|+.+. ..+|.|.+++.+|+|.|+|.+.
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g--~~l-------~~~~~~~~~------~~~L~I~~~~~~DsG~Y~C~a~ 65 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDG--VQL-------GENNRTRIT------GEEVQIKDAVPRDSGLYACVTS 65 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCC--cCC-------CCCceEEEe------CCEEEECCCChhhCEEEEEEEe
Confidence 35678899999999999986 5689999843 222 235677664 2289999999999999999994
Q ss_pred -CCCCeeEEEEece
Q psy14080 94 -PYTTTSHSQNAPG 106 (113)
Q Consensus 94 -~~~~~s~~~~L~V 106 (113)
..+..+..+.|.|
T Consensus 66 n~~g~~~~~~~v~V 79 (79)
T cd04973 66 SPSGSDTTYFSVNV 79 (79)
T ss_pred CCCCcccEEEEEeC
Confidence 4566666666654
No 56
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.63 E-value=6.9e-15 Score=89.12 Aligned_cols=82 Identities=13% Similarity=0.238 Sum_probs=61.1
Q ss_pred eEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-c
Q psy14080 15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-Q 93 (113)
Q Consensus 15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~ 93 (113)
...+.+|+++.|.|.+.+.+.+.|.|||.. ..+..+. ...++... ...++|.|.+++++|+|.|.|.+ +
T Consensus 3 ~~~v~~G~~~~L~C~~~g~P~p~i~W~k~g--~~l~~~~----~~~~~~~~----~~~~~l~i~~~~~~D~G~Y~C~a~N 72 (85)
T cd05857 3 LHAVPAANTVKFRCPAAGNPTPTMRWLKNG--KEFKQEH----RIGGYKVR----NQHWSLIMESVVPSDKGNYTCVVEN 72 (85)
T ss_pred cEEcCCCCEEEEEEEcCCCCCCEEEEEECC--EECCCCC----ceeeeEEe----CCceEEEEccCCcccCEEEEEEEEe
Confidence 356888999999999999999999999843 2221110 01122222 24779999999999999999999 5
Q ss_pred CCCCeeEEEEece
Q psy14080 94 PYTTTSHSQNAPG 106 (113)
Q Consensus 94 ~~~~~s~~~~L~V 106 (113)
..+..+..+.|.|
T Consensus 73 ~~G~~~~~~~l~v 85 (85)
T cd05857 73 EYGSINHTYHLDV 85 (85)
T ss_pred CCCEEEEEEEEEC
Confidence 6688888888876
No 57
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.63 E-value=4.9e-15 Score=90.38 Aligned_cols=80 Identities=18% Similarity=0.185 Sum_probs=63.1
Q ss_pred ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080 12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ 91 (113)
Q Consensus 12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 91 (113)
...+.++.+|+++.|.|.+.+.+.+.+.|+|.. ..+ ..+.|+... +..|.|.+++.+|+|.|.|.
T Consensus 5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g--~~~-------~~~~~~~~~------~~~L~i~~~~~~D~G~Y~C~ 69 (85)
T cd05728 5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNG--QPL-------ASENRIEVE------AGDLRITKLSLSDSGMYQCV 69 (85)
T ss_pred cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECC--EEC-------CCCCeEEEe------CCEEEEeeCCHHHCEEEEEE
Confidence 455678899999999999999999999999843 222 234566653 33899999999999999999
Q ss_pred ec-CCCCeeEEEEece
Q psy14080 92 AQ-PYTTTSHSQNAPG 106 (113)
Q Consensus 92 ~~-~~~~~s~~~~L~V 106 (113)
+. ..+..+..++|.|
T Consensus 70 a~N~~G~~~~~~~l~V 85 (85)
T cd05728 70 AENKHGTIYASAELAV 85 (85)
T ss_pred EECCCCeEEEEEEEEC
Confidence 94 5577777788765
No 58
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.63 E-value=8.2e-15 Score=87.58 Aligned_cols=74 Identities=22% Similarity=0.232 Sum_probs=57.5
Q ss_pred EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEEE
Q psy14080 24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHSQ 102 (113)
Q Consensus 24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~~ 102 (113)
+.|.|.+.+.|.+.|.|+|. +..+.. ...|+.+.. .+.+..+|.|.+++.+|+|.|.|.+ +..+..+..+
T Consensus 1 v~L~C~v~G~P~P~v~W~k~--~~~i~~------~~~r~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 71 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKN--NEMLTY------NTDRISLYQ-DNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNA 71 (75)
T ss_pred CEEEEEEeecCCCeEEEEEC--CEECCC------CCCcEEEEE-cCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEE
Confidence 47999999999999999984 333321 245777753 2334568999999999999999999 5678888888
Q ss_pred Eece
Q psy14080 103 NAPG 106 (113)
Q Consensus 103 ~L~V 106 (113)
.|.|
T Consensus 72 ~l~v 75 (75)
T cd05744 72 RLDV 75 (75)
T ss_pred EEeC
Confidence 8876
No 59
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.62 E-value=1.2e-14 Score=89.35 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=62.1
Q ss_pred CCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeC--CCCcEEEEEccCCCCCCEEEEEee-cCCCC
Q psy14080 21 AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTD--GSDDWNLQIKFLQKRDNGTYECQA-QPYTT 97 (113)
Q Consensus 21 G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~ 97 (113)
|++++|.|.+.+.+.+.+.|+|.+ ..+. ....||.+.... .....+|.|.+++.+|+|.|+|.+ +..+.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~--~~i~------~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~ 72 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKED--RIIN------PEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGE 72 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCC--EECC------CCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCc
Confidence 789999999999988899998843 3331 123577765321 122368999999999999999999 56788
Q ss_pred eeEEEEeceecc
Q psy14080 98 TSHSQNAPGLGD 109 (113)
Q Consensus 98 ~s~~~~L~V~g~ 109 (113)
.+..+.|.|.+.
T Consensus 73 ~~~~~~L~V~~~ 84 (88)
T cd05735 73 DRGIIQLTVQEP 84 (88)
T ss_pred ceEEEEEEEeCC
Confidence 888999999753
No 60
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.62 E-value=6.6e-15 Score=87.22 Aligned_cols=72 Identities=22% Similarity=0.322 Sum_probs=58.1
Q ss_pred CCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCee
Q psy14080 21 AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTS 99 (113)
Q Consensus 21 G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s 99 (113)
|+++.|.|.+.+.|.+.+.|+|.. ..+ ..++|+.+. .+.+|.|.+++.+|+|.|.|.+ +..+..+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~--~~~-------~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~ 66 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGT--ELL-------TNSSRICIW-----PDGSLEILNVTKSDEGKYTCFAENFFGKAN 66 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECC--EEc-------ccCCCEEEC-----CCCeEEEccCChhHCEEEEEEEECCCCceE
Confidence 789999999999999999999853 222 235677764 2347999999999999999999 5668888
Q ss_pred EEEEece
Q psy14080 100 HSQNAPG 106 (113)
Q Consensus 100 ~~~~L~V 106 (113)
..+.|.|
T Consensus 67 ~~~~l~V 73 (73)
T cd04969 67 STGSLSV 73 (73)
T ss_pred EEEEEEC
Confidence 8888876
No 61
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.62 E-value=5.6e-15 Score=88.48 Aligned_cols=79 Identities=11% Similarity=0.209 Sum_probs=58.4
Q ss_pred eEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-
Q psy14080 15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ- 93 (113)
Q Consensus 15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~- 93 (113)
.+.+.+|+++.|.|.+.+.+.+.+.|+|.... +. ...+... ....++|.|.+++++|+|.|+|.+.
T Consensus 3 ~~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~-~~--------~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~N 69 (82)
T cd05856 3 VIARPVGSSVRLKCVASGNPRPDITWLKDNKP-LT--------PTEIGES----RKKKWTLSLKNLKPEDSGKYTCHVSN 69 (82)
T ss_pred ceeccCCCeEEEEEEeeEeCCCcEEEEECCcC-Cc--------CCcccee----cCceEEEEEccCChhhCEEEEEEEEc
Confidence 45677899999999999988899999985422 11 1111111 1246799999999999999999994
Q ss_pred CCCCeeEEEEece
Q psy14080 94 PYTTTSHSQNAPG 106 (113)
Q Consensus 94 ~~~~~s~~~~L~V 106 (113)
..+..+..+.|.|
T Consensus 70 ~~G~~~~~~~v~v 82 (82)
T cd05856 70 RAGEINATYKVDV 82 (82)
T ss_pred CCccEEEEEEEeC
Confidence 5677777777765
No 62
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.61 E-value=4.2e-15 Score=88.40 Aligned_cols=74 Identities=16% Similarity=0.255 Sum_probs=56.2
Q ss_pred EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEEE
Q psy14080 24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHSQ 102 (113)
Q Consensus 24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~~ 102 (113)
|.|.|.+.+.|.+.|.|+|.... .+.. ..+.|+.+.. ....|.|.+++.+|+|.|.|.+ +..+..+..+
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~-~~~~-----~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~ 70 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGT-DFPA-----ARERRMHVMP----EDDVFFIVDVKIEDTGVYSCTAQNTAGSISANA 70 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCc-cCCc-----ccccceEEec----CCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeE
Confidence 57999999999999999996432 1110 1345776542 2348999999999999999999 4567888889
Q ss_pred Eecee
Q psy14080 103 NAPGL 107 (113)
Q Consensus 103 ~L~V~ 107 (113)
.|.|+
T Consensus 71 ~l~V~ 75 (75)
T cd05763 71 TLTVL 75 (75)
T ss_pred EEEEC
Confidence 98874
No 63
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.60 E-value=5.2e-15 Score=91.08 Aligned_cols=82 Identities=16% Similarity=0.133 Sum_probs=57.9
Q ss_pred CCcEEEEEEEccCCCCEEEEEecC--CCeEEEecceEEcCCCCEEEEEe-----CCCCcEEEEEccCCCCCCEEEEEee-
Q psy14080 21 AVFSYSDKTVRDIVKVRVSWVRRR--DWHILTSGVLTYTNDARFQVIHT-----DGSDDWNLQIKFLQKRDNGTYECQA- 92 (113)
Q Consensus 21 G~~a~L~C~v~~~~~~~V~W~k~~--~~~~l~~~~~~~~~~~R~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~~- 92 (113)
|+++.|.|.+.+.|.+.|.|+|.. .+..+..+. .++..+... ......+|.|++++.+|+|.|.|.+
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 75 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDG-----LPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAG 75 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCC-----CeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEE
Confidence 789999999999999999999853 122221110 111222110 1123468999999999999999999
Q ss_pred cCCCCeeEEEEecee
Q psy14080 93 QPYTTTSHSQNAPGL 107 (113)
Q Consensus 93 ~~~~~~s~~~~L~V~ 107 (113)
+..+..+..++|.|+
T Consensus 76 N~~G~~~~~a~L~V~ 90 (90)
T cd05858 76 NSIGISHHSAWLTVL 90 (90)
T ss_pred eCCCcccceEEEEEC
Confidence 667888888999884
No 64
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.60 E-value=2.7e-14 Score=87.32 Aligned_cols=81 Identities=15% Similarity=0.088 Sum_probs=59.0
Q ss_pred CcEEEEEEEccCCCC--EEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCe
Q psy14080 22 VFSYSDKTVRDIVKV--RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTT 98 (113)
Q Consensus 22 ~~a~L~C~v~~~~~~--~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~ 98 (113)
++++|.|.+.+.|.+ .+.|+|. +..+... ..+.||.... ......+|.|.+++.+|+|.|.|.+ +..+..
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~--g~~i~~~----~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~ 73 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLD--DFPIDLD----KPNGHYRRME-VKETIGDLVIVNAQLSHAGTYTCTAQTVVDSA 73 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEEC--CeEcccc----CCCCcEEEEE-ecceEeEEEEccCChhhCeEEEEEEecCCCCE
Confidence 478999999998876 5799873 3333221 1244553321 1123569999999999999999999 566888
Q ss_pred eEEEEeceecc
Q psy14080 99 SHSQNAPGLGD 109 (113)
Q Consensus 99 s~~~~L~V~g~ 109 (113)
+..+.|.|.|.
T Consensus 74 ~~~~~L~V~~~ 84 (85)
T cd05854 74 SASATLVVRGP 84 (85)
T ss_pred EEEEEEEEECC
Confidence 99999999874
No 65
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.59 E-value=3e-14 Score=84.44 Aligned_cols=73 Identities=19% Similarity=0.225 Sum_probs=58.1
Q ss_pred cEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEE
Q psy14080 23 FSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHS 101 (113)
Q Consensus 23 ~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~ 101 (113)
++.|.|.+.+.|.+.+.|+|.. ..+ ..++|+.+.. .....+|.|.+++.+|+|.|.|.+ +..+..+..
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g--~~l-------~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 69 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDG--KPL-------KLSGRVQIET--TASSTSLVIKNAERSDSGKYTLTLKNPAGEKSAT 69 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECC--EEc-------CCCCeEEEEE--CCCeEEEEECCCCcCcCEEEEEEEECCCccEEEE
Confidence 4789999999999999999843 222 2356777653 335679999999999999999999 566888888
Q ss_pred EEece
Q psy14080 102 QNAPG 106 (113)
Q Consensus 102 ~~L~V 106 (113)
+.|.|
T Consensus 70 ~~l~V 74 (74)
T cd05748 70 INVKV 74 (74)
T ss_pred EEEEC
Confidence 88875
No 66
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.59 E-value=2.3e-14 Score=90.44 Aligned_cols=88 Identities=15% Similarity=0.112 Sum_probs=64.7
Q ss_pred eecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEe----CCCCcEEEEEccCCCCCCE
Q psy14080 11 AFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHT----DGSDDWNLQIKFLQKRDNG 86 (113)
Q Consensus 11 ~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~----~~~~~~~L~I~~v~~~D~G 86 (113)
..+.+.++..|+.+.|.|.+.+.|.+.|.|||. +..|.. +.+...... ......+|+|.+++.+|+|
T Consensus 8 ~~~~~~~~~~~~~~~l~~~v~g~P~P~v~W~kd--g~~l~~-------~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G 78 (101)
T cd05859 8 TFGQLEFANLHEVKEFVVEVEAYPPPQIRWLKD--NRTLIE-------NLTEITTSEHNVQETRYVSKLKLIRAKEEDSG 78 (101)
T ss_pred CCCceEEEecCCcEEEEEEEEEeCCCceEEEEC--CEECcC-------CcceEEeccccccceeeccEEEEeeCCHHHCE
Confidence 345678899999999999999999999999993 333321 222111100 0112358999999999999
Q ss_pred EEEEee-cCCCCeeEEEEecee
Q psy14080 87 TYECQA-QPYTTTSHSQNAPGL 107 (113)
Q Consensus 87 ~Y~C~~-~~~~~~s~~~~L~V~ 107 (113)
.|+|.+ +..+..+.++.|.|.
T Consensus 79 ~Ytc~A~N~~g~~~~t~~l~V~ 100 (101)
T cd05859 79 LYTALAQNEDAVKSYTFALQIQ 100 (101)
T ss_pred EEEEEEEcCCceEEEEEEEEEE
Confidence 999999 566788888888874
No 67
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.59 E-value=1.3e-14 Score=87.95 Aligned_cols=81 Identities=22% Similarity=0.282 Sum_probs=60.7
Q ss_pred cceEEEecCCcEEEEEEE-ccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080 13 GQISTGFLAVFSYSDKTV-RDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ 91 (113)
Q Consensus 13 ~~~~tv~~G~~a~L~C~v-~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 91 (113)
+.++++.+|+++.|.|.+ .+.+.+.+.|+|.. ..+. ..+.|+.+.. +.+|.|.+++.+|+|.|+|.
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g--~~~~------~~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~ 69 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDG--QPLN------LDNERVRIVD-----DGNLLIAEARKSDEGTYKCV 69 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECC--EECC------CCCCCEEEcc-----CCEEEEeECCcccCEEEEEE
Confidence 356788899999999998 67888899999843 2221 1255776642 45899999999999999999
Q ss_pred ec-CCCC-eeEEEEece
Q psy14080 92 AQ-PYTT-TSHSQNAPG 106 (113)
Q Consensus 92 ~~-~~~~-~s~~~~L~V 106 (113)
+. ..+. .+..+.|.|
T Consensus 70 a~N~~G~~~s~~~~l~V 86 (86)
T cd05724 70 ATNMVGERESAAARLSV 86 (86)
T ss_pred EEeccCceeeeeEEEEC
Confidence 95 4443 467777765
No 68
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.59 E-value=9.3e-15 Score=85.61 Aligned_cols=68 Identities=21% Similarity=0.279 Sum_probs=54.4
Q ss_pred EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEEE
Q psy14080 24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHSQ 102 (113)
Q Consensus 24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~~ 102 (113)
|+|.|.+.+.|.+.+.|+|.... + ...|+.+. .+.+|.|.+++.+|+|.|+|.+ +..+..+..+
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~-~---------~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 65 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGE-L---------PKGRAEIL-----DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASA 65 (69)
T ss_pred CEEEEECccCCCCEEEEEECCcc-C---------CCCcEEEe-----eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEE
Confidence 57999999999999999996421 1 24577765 2458999999999999999999 4567888888
Q ss_pred Eece
Q psy14080 103 NAPG 106 (113)
Q Consensus 103 ~L~V 106 (113)
.|.|
T Consensus 66 ~l~V 69 (69)
T cd05725 66 SLTV 69 (69)
T ss_pred EEEC
Confidence 8875
No 69
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.59 E-value=1.6e-14 Score=86.75 Aligned_cols=68 Identities=16% Similarity=0.222 Sum_probs=52.8
Q ss_pred CCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-CCCCee
Q psy14080 21 AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PYTTTS 99 (113)
Q Consensus 21 G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-~~~~~s 99 (113)
|+++.|.|.+.+.|.+.|.|+|.. .. + ..+.|+.+.. ..+..+|+|++++.+|+|.|+|.+. ..+...
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~-~~-~-------~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 69 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNW-GH-V-------PDSARVSITS--EGGYGTLTIRDVKESDQGAYTCEAINTRGMVF 69 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECC-eE-C-------CCCCCEEEEE--CCCEEEEEECCCChHHCEEEEEEEEecCCEEE
Confidence 789999999999999999999843 21 1 2356777653 3456799999999999999999994 555544
No 70
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=99.59 E-value=2.9e-14 Score=89.66 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=58.6
Q ss_pred cEEEEEEEccCC---CCEEEEEecCCC----eEE--Ee--cceEEcC-CCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080 23 FSYSDKTVRDIV---KVRVSWVRRRDW----HIL--TS--GVLTYTN-DARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC 90 (113)
Q Consensus 23 ~a~L~C~v~~~~---~~~V~W~k~~~~----~~l--~~--~~~~~~~-~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 90 (113)
+|+|+|.+.... ...|.|+|+..+ .+. .. +...+.. .+|..+..+...++.+|+|+|++.+|+|+|+|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 689999997554 348999998632 221 11 2222222 25666654445678899999999999999999
Q ss_pred eecCC--CCeeEEEEecee
Q psy14080 91 QAQPY--TTTSHSQNAPGL 107 (113)
Q Consensus 91 ~~~~~--~~~s~~~~L~V~ 107 (113)
.+.+. +..+..+.|.|.
T Consensus 82 ~v~~~p~g~~~~~~~L~V~ 100 (100)
T cd05888 82 RVITFPAGNFEAELVLTVW 100 (100)
T ss_pred EEEeCCCCCeeeEEEEEeC
Confidence 99754 455777777763
No 71
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.58 E-value=1.7e-14 Score=85.81 Aligned_cols=72 Identities=21% Similarity=0.243 Sum_probs=54.8
Q ss_pred EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-CCCC-eeEE
Q psy14080 24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PYTT-TSHS 101 (113)
Q Consensus 24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-~~~~-~s~~ 101 (113)
|+|.|.+.+.|.+.|.|||.. ..+.. ..+.|+... .+.+|.|.+++.+|+|.|.|.+. ..+. .+..
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~--~~~~~-----~~~~~~~~~-----~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~ 68 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDF--LPVDT-----TSNGRIKQL-----RSGALQIENSEESDQGKYECVATNSAGTRYSAP 68 (74)
T ss_pred CEEEEEEeEecCCEEEEEECC--EECcc-----CCCCCEEEc-----CCcEEEECCCChhhCEEEEEEEECCCCceEccc
Confidence 579999999999999999953 22210 135677764 24479999999999999999995 4454 5788
Q ss_pred EEecee
Q psy14080 102 QNAPGL 107 (113)
Q Consensus 102 ~~L~V~ 107 (113)
++|.|+
T Consensus 69 a~l~v~ 74 (74)
T cd05738 69 ANLYVR 74 (74)
T ss_pred EEEEEC
Confidence 888875
No 72
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.58 E-value=2.5e-14 Score=84.65 Aligned_cols=73 Identities=16% Similarity=0.247 Sum_probs=56.8
Q ss_pred CCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCee
Q psy14080 21 AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTS 99 (113)
Q Consensus 21 G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s 99 (113)
|+++.|.|.+.+.|.+.|.|+|.+ ...+. ...|+... ...+|.|.+++.+|+|.|.|.+ +..+..+
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~-~~~~~-------~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~ 67 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPD-GKLIS-------NSSRTLVY-----DNGTLDILITTVKDTGSFTCIASNAAGEAT 67 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCC-CEEec-------CCCeEEEe-----cCCEEEEEECChhhCEEEEEEEECCCCeEE
Confidence 789999999999999999999754 33332 24455543 2348999999999999999999 4567778
Q ss_pred EEEEece
Q psy14080 100 HSQNAPG 106 (113)
Q Consensus 100 ~~~~L~V 106 (113)
..+.|.|
T Consensus 68 ~~~~l~v 74 (74)
T cd05764 68 ATVELHI 74 (74)
T ss_pred EEEEEEC
Confidence 8888765
No 73
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.58 E-value=2.2e-14 Score=88.06 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=60.2
Q ss_pred CcEEEEEEEccC--CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-CCCCe
Q psy14080 22 VFSYSDKTVRDI--VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PYTTT 98 (113)
Q Consensus 22 ~~a~L~C~v~~~--~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-~~~~~ 98 (113)
++++|.|.++.. ....+.|+| +++.+.++ ....||.....+ ....+|.|+|++.+|+|.|+|.+. .....
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~--dg~~i~~~----~~~~~~~~~~~~-~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~ 73 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSF--NGHLIDFQ----KDGDHFERVGGQ-DSAGDLMIRSIQLKHAGKYVCMVQTSVDKL 73 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEE--CCEECccc----CCCccEEEeccC-CCCCcEEEecCCHHHCEEEEEEEEcccCce
Confidence 579999999864 467899987 45555322 124577764211 235599999999999999999995 45788
Q ss_pred eEEEEeceecc
Q psy14080 99 SHSQNAPGLGD 109 (113)
Q Consensus 99 s~~~~L~V~g~ 109 (113)
+..+.|.|.|.
T Consensus 74 ~a~a~L~V~~p 84 (85)
T cd05853 74 SAAADLIVRGP 84 (85)
T ss_pred EEEEEEEEecC
Confidence 99999999874
No 74
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.58 E-value=2.4e-14 Score=85.68 Aligned_cols=75 Identities=17% Similarity=0.160 Sum_probs=56.5
Q ss_pred CCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCee
Q psy14080 21 AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTS 99 (113)
Q Consensus 21 G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s 99 (113)
|++++|.|.+.+.|.+.|.|+|. +..+... ..+.++.. +...|.|.+++++|+|.|.|.+ +..+..+
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~--g~~i~~~----~~~~~~~~------~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~ 68 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTN--GVPIEIA----PTDPSRKV------DGDTIIFSKVQERSSAVYQCNASNEYGYLL 68 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEEC--CEEcccc----CCCceEEe------cCCEEEECCCCHhhCEEEEEEEEcCCCEEE
Confidence 78999999999999999999983 3333211 01112221 1237999999999999999999 5678888
Q ss_pred EEEEecee
Q psy14080 100 HSQNAPGL 107 (113)
Q Consensus 100 ~~~~L~V~ 107 (113)
..+.|.|+
T Consensus 69 ~~~~l~v~ 76 (76)
T cd05868 69 ANAFVNVL 76 (76)
T ss_pred EEEEEEeC
Confidence 89999885
No 75
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=99.58 E-value=9.6e-14 Score=89.74 Aligned_cols=93 Identities=16% Similarity=0.210 Sum_probs=64.1
Q ss_pred ceEEEecCCcEEEEEEEccC----CCCEEEE-EecCC-C---eEEEec-ceEEc-C----CCCEEEEEeCCCCcEEEEEc
Q psy14080 14 QISTGFLAVFSYSDKTVRDI----VKVRVSW-VRRRD-W---HILTSG-VLTYT-N----DARFQVIHTDGSDDWNLQIK 78 (113)
Q Consensus 14 ~~~tv~~G~~a~L~C~v~~~----~~~~V~W-~k~~~-~---~~l~~~-~~~~~-~----~~R~~~~~~~~~~~~~L~I~ 78 (113)
..+.+..|++|+|+|.+... ....|.| |+... . .++... ...+. . .+|+....+...++.+|.|+
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 45678889999999999753 2458999 55432 1 244432 22222 1 24887776666788999999
Q ss_pred cCCCCCCEEEEEeecCCCC---eeEEEEece
Q psy14080 79 FLQKRDNGTYECQAQPYTT---TSHSQNAPG 106 (113)
Q Consensus 79 ~v~~~D~G~Y~C~~~~~~~---~s~~~~L~V 106 (113)
|++.+|+|+|.|.+.+.|. ....+.|.|
T Consensus 86 nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~v 116 (116)
T cd05879 86 NLDYTDNGTFTCDVKNPPDIVGKSSQVTLYV 116 (116)
T ss_pred cCCcccCEEEEEEEEcCCCcCCceeEEEEEC
Confidence 9999999999999975542 335566654
No 76
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=99.58 E-value=1.1e-14 Score=89.30 Aligned_cols=81 Identities=19% Similarity=0.095 Sum_probs=56.0
Q ss_pred CCcEEEEEEEccCCCCEEEEEecCCCe---EEEe---cceEE-c--CCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080 21 AVFSYSDKTVRDIVKVRVSWVRRRDWH---ILTS---GVLTY-T--NDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ 91 (113)
Q Consensus 21 G~~a~L~C~v~~~~~~~V~W~k~~~~~---~l~~---~~~~~-~--~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 91 (113)
|++|+|+|.+.......|.|+|..... .+.. ..... . -.+|+.+. .+++|+|++++++|+|.|+|.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~-----~~~sL~I~~l~~~DsG~Y~c~ 75 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY-----PNGSLLIQNLTKEDSGTYTLQ 75 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc-----CCceEEEccCCchhcEEEEEE
Confidence 789999999987667799999987432 1110 11111 1 13566654 248999999999999999999
Q ss_pred ecCCC--CeeEEEEece
Q psy14080 92 AQPYT--TTSHSQNAPG 106 (113)
Q Consensus 92 ~~~~~--~~s~~~~L~V 106 (113)
+.... +....+.|.|
T Consensus 76 v~~~~~~~~~~~~~l~v 92 (92)
T cd05741 76 IISTNGVTENAKFFLRV 92 (92)
T ss_pred EEcCCCcEEEEEEEEEC
Confidence 96543 4456666654
No 77
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.57 E-value=9.3e-14 Score=83.45 Aligned_cols=83 Identities=12% Similarity=0.265 Sum_probs=60.6
Q ss_pred ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080 14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93 (113)
Q Consensus 14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 93 (113)
+.+.+.+|+++.|.|.+.+.+.+.|.|+|.. ..+. .+.++.... .....+.|.|.+++.+|+|.|+|.+.
T Consensus 2 ~~~~~~~G~~~~l~C~~~~~p~~~v~W~k~~--~~~~-------~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~C~~~ 71 (85)
T cd05729 2 RLHAVPAGSTVRLKCPASGNPRPTITWLKDG--KPFK-------KEHRIGGYK-VRKKKWTLILESVVPSDSGKYTCIVE 71 (85)
T ss_pred ceeEecCCCcEEEEEEcCCCCCCeEEEEECC--EECc-------ccCceeEEE-ccCcEEEEEEeECCcccCEEEEEEEE
Confidence 3467788999999999998888899999853 2221 233333221 12346799999999999999999994
Q ss_pred -CCCCeeEEEEece
Q psy14080 94 -PYTTTSHSQNAPG 106 (113)
Q Consensus 94 -~~~~~s~~~~L~V 106 (113)
..+..+.++.|.|
T Consensus 72 n~~g~~~~~~~l~v 85 (85)
T cd05729 72 NKYGSINHTYKVDV 85 (85)
T ss_pred ECCceEEEEEEEeC
Confidence 4566777777764
No 78
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.57 E-value=2.7e-14 Score=87.60 Aligned_cols=85 Identities=16% Similarity=0.146 Sum_probs=60.8
Q ss_pred cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080 13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92 (113)
Q Consensus 13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 92 (113)
.+.+++.+|+++.|+|.+.+ +.+.+.|||++..... .. ....|+... ...|.|.+++++|+|.|+|.+
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~--~~---~~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~a 70 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQR--KE---EPEERLLVT------EDGLLIRSVSPADAGVYTCQS 70 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCccccc--cc---CcCceEEEc------CCCEEEccCCHHHCEEEEEEE
Confidence 35678899999999999876 7789999997532111 00 012355443 235999999999999999999
Q ss_pred cCC--CCeeEEEEeceecc
Q psy14080 93 QPY--TTTSHSQNAPGLGD 109 (113)
Q Consensus 93 ~~~--~~~s~~~~L~V~g~ 109 (113)
... ...+..+.|.|..+
T Consensus 71 ~~~~~~~~~~~~~l~V~~~ 89 (89)
T cd04979 71 VEHGFKQTLATYSLNVLEV 89 (89)
T ss_pred ecCccceeEeEEEEEEecC
Confidence 533 45677788888753
No 79
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.56 E-value=4.2e-14 Score=83.49 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=54.8
Q ss_pred cEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEE
Q psy14080 23 FSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHS 101 (113)
Q Consensus 23 ~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~ 101 (113)
+++|.|.+.+.|.+.|.|+|.. ..+. ...|+.+.. +..|.|.+++.+|+|.|.|.+ +..+..+..
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g-~~~~--------~~~~~~~~~-----~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~ 66 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNG-DMVI--------PSDYFKIVK-----EHNLQVLGLVKSDEGFYQCIAENDVGNVQAS 66 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECC-eECC--------CCCCEEEEe-----cCCEEEEcCCcccCEEEEEEEEcCCCEEEEE
Confidence 4789999999999999999843 2221 345676652 336889999999999999999 566888888
Q ss_pred EEece
Q psy14080 102 QNAPG 106 (113)
Q Consensus 102 ~~L~V 106 (113)
+.|.|
T Consensus 67 ~~L~V 71 (71)
T cd05723 67 AQLII 71 (71)
T ss_pred EEEEC
Confidence 88875
No 80
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.56 E-value=2.6e-14 Score=85.85 Aligned_cols=77 Identities=17% Similarity=0.209 Sum_probs=54.6
Q ss_pred EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-CCCC-eeEE
Q psy14080 24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PYTT-TSHS 101 (113)
Q Consensus 24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-~~~~-~s~~ 101 (113)
|+|.|.+.+.|.+.|.|+|..+... .........++|+.+. .+.+|.|.+++.+|+|.|.|.+. ..+. .++.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~-~~~~~~~~~~~r~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~ 74 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGH-PQHTHTCCLAGRIQLL-----SNGSLLIKHVLEEDSGYYLCKVSNDVGADASKS 74 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccc-cccccccccCCCEEEe-----cCCeEEECcCCcccCEEEEEEEEeCCCCCCceE
Confidence 5799999999999999999753211 1000011245787764 35689999999999999999994 4443 4677
Q ss_pred EEece
Q psy14080 102 QNAPG 106 (113)
Q Consensus 102 ~~L~V 106 (113)
+.|.|
T Consensus 75 ~~l~~ 79 (79)
T cd05734 75 MVLTV 79 (79)
T ss_pred EEEeC
Confidence 77765
No 81
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=99.56 E-value=8.6e-14 Score=86.34 Aligned_cols=85 Identities=13% Similarity=0.204 Sum_probs=57.0
Q ss_pred CcEEEEEEEccCC---CCEEEEEecCCC--eEEE-ec---ceEEcC--CCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080 22 VFSYSDKTVRDIV---KVRVSWVRRRDW--HILT-SG---VLTYTN--DARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC 90 (113)
Q Consensus 22 ~~a~L~C~v~~~~---~~~V~W~k~~~~--~~l~-~~---~~~~~~--~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 90 (113)
++|+|+|.+.... ...|.|+|+..+ ..+. .. ...+.. ..|..+.. ...++.+|+|++++.+|+|.|+|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLN-SSLEDATISISNLRLEDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeC-CCCCceEEEEccCCcccCEEEEE
Confidence 5799999998654 347999998742 2211 11 111112 24554442 12268899999999999999999
Q ss_pred eecCC--CCeeEEEEecee
Q psy14080 91 QAQPY--TTTSHSQNAPGL 107 (113)
Q Consensus 91 ~~~~~--~~~s~~~~L~V~ 107 (113)
.+... +.......|.|+
T Consensus 80 ~v~~~~~g~~~~~~~l~V~ 98 (98)
T cd05718 80 EFATFPQGNRQKVTTLTVL 98 (98)
T ss_pred EEEeCCCCcEEEEEEEEeC
Confidence 99654 466777788775
No 82
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.56 E-value=7.6e-14 Score=86.08 Aligned_cols=96 Identities=13% Similarity=0.100 Sum_probs=62.1
Q ss_pred CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEc--cCCC
Q psy14080 5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIK--FLQK 82 (113)
Q Consensus 5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~--~v~~ 82 (113)
|+.++ ...+++++.+|+++.|.|.+.+.+.+.|.|||. +..+..+. .....+.... .++....+.|. +++.
T Consensus 1 ~P~i~-~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~--g~~l~~~~--~~~~~~~~~~--~~~~~~~~~i~~~~~~~ 73 (100)
T cd07693 1 PPRIV-EHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKN--GQPLETDK--DDPRSHRIVL--PSGSLFFLRVVHGRKGR 73 (100)
T ss_pred CCeEE-ecCceeEEcCCCeEEEEeeCCcCCCCEEEEEEC--CEECcccc--CCCCcceEEe--cCCcEEEEEeeccCCCc
Confidence 33444 446778999999999999999999999999984 33322110 0011222222 22233344443 4479
Q ss_pred CCCEEEEEeec-CCCC-eeEEEEecee
Q psy14080 83 RDNGTYECQAQ-PYTT-TSHSQNAPGL 107 (113)
Q Consensus 83 ~D~G~Y~C~~~-~~~~-~s~~~~L~V~ 107 (113)
+|+|.|+|.+. ..+. .+..+.|.|.
T Consensus 74 ~D~G~Y~C~a~N~~G~~~s~~~~l~v~ 100 (100)
T cd07693 74 SDEGVYVCVAHNSLGEAVSRNASLEVA 100 (100)
T ss_pred CcCEEEEEEEEccccceecceEEEEeC
Confidence 99999999994 5565 6788888773
No 83
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.56 E-value=2.1e-13 Score=85.13 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=65.0
Q ss_pred CceeeEeecceEEEecCCcEEEEEEEccCCCC-EEEEEecCCCeEEEecceEEcCCCCEEEEEeCC--CCcEEEEEccCC
Q psy14080 5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKV-RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDG--SDDWNLQIKFLQ 81 (113)
Q Consensus 5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~-~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~--~~~~~L~I~~v~ 81 (113)
|+.|.. ...+.+.+|+++.|.|.+.+.|.+ .|.|++.+ ..+.. ..+.||.+..... ....+|+|.+++
T Consensus 2 pp~i~~--~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~--~~i~~-----~~~~r~~i~~~~~~~~~~s~L~I~~v~ 72 (98)
T cd05758 2 PPIITS--EATQYAILGDKGRVECFIFSTPPPDRIVWTWKE--NELES-----GSSGRYTVETDPSPGGVLSTLTISNTQ 72 (98)
T ss_pred CCeEcC--CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECC--EEccC-----CCCCCEEEEEecCCCceEEEEEECCcc
Confidence 455532 456778999999999999999888 69998743 23221 1246888764211 223589999999
Q ss_pred CCC-CEEEEEee-cCCCCeeEEEEe
Q psy14080 82 KRD-NGTYECQA-QPYTTTSHSQNA 104 (113)
Q Consensus 82 ~~D-~G~Y~C~~-~~~~~~s~~~~L 104 (113)
.+| +|.|.|.+ +..+..+..+.|
T Consensus 73 ~~d~~G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 73 ESDFQTSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred ccccceeEEEEEEcCCCcccEEEEe
Confidence 955 99999999 566777777776
No 84
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.55 E-value=1.2e-13 Score=83.92 Aligned_cols=81 Identities=15% Similarity=0.145 Sum_probs=57.7
Q ss_pred CcEEEEEEEccCCCC--EEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-CCCCe
Q psy14080 22 VFSYSDKTVRDIVKV--RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PYTTT 98 (113)
Q Consensus 22 ~~a~L~C~v~~~~~~--~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-~~~~~ 98 (113)
++++|.|.+.+.+.+ .+.|+|. +..+.... .+.+|+... ......+|.|.+++.+|+|.|.|.+. ..+..
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~--g~~i~~~~----~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 73 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFN--GVPIDFDK----DGGHYRRVG-GKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSL 73 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEEC--CeEeeccC----CCccEEEEe-cccccceEEEccCCHHhCeeeEEEEecCCCcE
Confidence 579999999988876 5689873 44432211 233443221 11245689999999999999999995 45778
Q ss_pred eEEEEeceecc
Q psy14080 99 SHSQNAPGLGD 109 (113)
Q Consensus 99 s~~~~L~V~g~ 109 (113)
+..+.|.|.|.
T Consensus 74 ~~~~~l~V~~p 84 (85)
T cd04970 74 SASADLIVRGP 84 (85)
T ss_pred EEEEEEEEECC
Confidence 89999999874
No 85
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=99.55 E-value=7.9e-14 Score=87.00 Aligned_cols=85 Identities=14% Similarity=0.134 Sum_probs=57.8
Q ss_pred CCcEEEEEEEccCCC-CEEEEEecCC--C-eEEEec---ceEEcC--CCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080 21 AVFSYSDKTVRDIVK-VRVSWVRRRD--W-HILTSG---VLTYTN--DARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ 91 (113)
Q Consensus 21 G~~a~L~C~v~~~~~-~~V~W~k~~~--~-~~l~~~---~~~~~~--~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 91 (113)
|++|+|+|.+..... ..|.|+|..+ + .+.... ...... .+|+.+. ..+.++.+|+|++++.+|+|+|+|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~nv~~~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSIT-SLGLNSTSITIWNVTLEDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEc-CCCCCccEEEEeCCceeeeEEEEEE
Confidence 789999999875432 3699999653 2 222221 111111 2465554 3556788999999999999999999
Q ss_pred ecCCC--CeeEEEEece
Q psy14080 92 AQPYT--TTSHSQNAPG 106 (113)
Q Consensus 92 ~~~~~--~~s~~~~L~V 106 (113)
+...| ..+..+.|.|
T Consensus 80 ~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 80 FNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEeCCCCCeeeEEEEEE
Confidence 97655 5567777776
No 86
>smart00406 IGv Immunoglobulin V-Type.
Probab=99.55 E-value=3.9e-14 Score=84.29 Aligned_cols=70 Identities=26% Similarity=0.313 Sum_probs=51.3
Q ss_pred cEEEEEEEccCCC--CEEEEEecCC---CeEEEec---ceEE---cCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080 23 FSYSDKTVRDIVK--VRVSWVRRRD---WHILTSG---VLTY---TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ 91 (113)
Q Consensus 23 ~a~L~C~v~~~~~--~~V~W~k~~~---~~~l~~~---~~~~---~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 91 (113)
+|.|+|.++.... ..|.|||+.. ...+... ...+ ...+||.+......+.++|+|++++++|+|+|+|+
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 4889999987654 3899999874 2333321 1122 23579988765457889999999999999999997
Q ss_pred e
Q psy14080 92 A 92 (113)
Q Consensus 92 ~ 92 (113)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 5
No 87
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.54 E-value=5.8e-14 Score=83.27 Aligned_cols=75 Identities=13% Similarity=0.070 Sum_probs=55.5
Q ss_pred CCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCee
Q psy14080 21 AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTS 99 (113)
Q Consensus 21 G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s 99 (113)
|+++.|.|.+.+.|.+.|.|+|. +..+... +...... .....|.|.+++.+|+|.|+|.+ +..+..+
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~--g~~~~~~------~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~ 68 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLN--GVPIEEL------PPDPRRR----VDGGTLILSNVQPNDTAVYQCNASNVHGYLL 68 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEEC--CEECCCC------CCcceEE----ccCCEEEECCCChhhCEEEEEEEEccCCeEE
Confidence 78999999999999999999973 2222111 1111111 13468999999999999999999 5567888
Q ss_pred EEEEecee
Q psy14080 100 HSQNAPGL 107 (113)
Q Consensus 100 ~~~~L~V~ 107 (113)
..++|.|+
T Consensus 69 ~~~~l~V~ 76 (76)
T cd04978 69 ANAFVHVV 76 (76)
T ss_pred EeEEEEEC
Confidence 88898874
No 88
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.54 E-value=7.3e-14 Score=83.73 Aligned_cols=73 Identities=15% Similarity=0.273 Sum_probs=53.1
Q ss_pred EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-CCCCe--eE
Q psy14080 24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PYTTT--SH 100 (113)
Q Consensus 24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-~~~~~--s~ 100 (113)
|+|.|.+.+.|.+.|.|||.. ..+. ....++.+.. +..+|.|.+++++|+|.|.|.+. ..+.. +.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g--~~l~------~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~ 68 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDG--TPLS------DGQGNYSVSS----KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQ 68 (77)
T ss_pred CEEEEEeeecCCCcEEEEECC--EECC------CCCccEEEeC----CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCc
Confidence 579999999999999999953 2231 1234565542 34599999999999999999994 55544 45
Q ss_pred EEEeceec
Q psy14080 101 SQNAPGLG 108 (113)
Q Consensus 101 ~~~L~V~g 108 (113)
.+.|.|..
T Consensus 69 ~~~l~v~d 76 (77)
T cd05760 69 NFTLSIID 76 (77)
T ss_pred eEEEEEec
Confidence 67777654
No 89
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.52 E-value=8.9e-14 Score=82.08 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=53.5
Q ss_pred EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEEE
Q psy14080 24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHSQ 102 (113)
Q Consensus 24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~~ 102 (113)
+.|.|.+.+.|.+.|.|+|.+.. +. ..|.... ....+|+|.+++.+|+|.|.|.+ +..+..+..+
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~-~~---------~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 66 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGP-LS---------PNRTKKL----NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHY 66 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcC-CC---------CCceeEE----cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEE
Confidence 46999999999999999986422 11 1222222 13569999999999999999999 5668888888
Q ss_pred Eecee
Q psy14080 103 NAPGL 107 (113)
Q Consensus 103 ~L~V~ 107 (113)
.|.|+
T Consensus 67 ~l~Ve 71 (71)
T cd05876 67 TVTVE 71 (71)
T ss_pred EEEEC
Confidence 88875
No 90
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=99.51 E-value=2.1e-13 Score=87.39 Aligned_cols=90 Identities=16% Similarity=0.169 Sum_probs=62.7
Q ss_pred cCCcEEEEEEEccC-------CCCEEEEEecCC-----Ce-EEE-ecceE-Ec--CCCCEEEEEe-CCCCcEEEEEccCC
Q psy14080 20 LAVFSYSDKTVRDI-------VKVRVSWVRRRD-----WH-ILT-SGVLT-YT--NDARFQVIHT-DGSDDWNLQIKFLQ 81 (113)
Q Consensus 20 ~G~~a~L~C~v~~~-------~~~~V~W~k~~~-----~~-~l~-~~~~~-~~--~~~R~~~~~~-~~~~~~~L~I~~v~ 81 (113)
.|++|+|+|.+.-. ..+.|.|+|+.+ .. ++. .+... .. -.+|+.+..+ .+.++.+|+|+|++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 47899999997632 247899999842 11 222 22221 11 1358777532 23578899999999
Q ss_pred CCCCEEEEEeecC-CCCeeEEEEeceecc
Q psy14080 82 KRDNGTYECQAQP-YTTTSHSQNAPGLGD 109 (113)
Q Consensus 82 ~~D~G~Y~C~~~~-~~~~s~~~~L~V~g~ 109 (113)
.+|+|+|.|.+.. ....+..+.|.|.|.
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~gv 109 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDTVPLEVTGV 109 (110)
T ss_pred HHHCEEEEEEEEECCcccEEEEEEEEEEE
Confidence 9999999999964 346678899999885
No 91
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.51 E-value=1.3e-13 Score=80.83 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=52.3
Q ss_pred EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEEE
Q psy14080 24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHSQ 102 (113)
Q Consensus 24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~~ 102 (113)
+.|.|.+.+.|.+.|.|+|. +..+ ....|+.+. .+.+|.|.+++.+|+|.|.|.+ +..+..+..+
T Consensus 1 v~L~C~~~g~P~p~i~W~k~--g~~~-------~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 66 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKD--GVQV-------TESGKFHIS-----PEGYLAIRDVGVADQGRYECVARNTIGYASVSM 66 (69)
T ss_pred CEeEecceEeCCCEEEEEEC--CEEC-------CCCCCEEEC-----CCCEEEECcCChhhCEEEEEEEECCCCcEEEEE
Confidence 47999999999999999983 2222 234677664 2448999999999999999999 5567777777
Q ss_pred Ee
Q psy14080 103 NA 104 (113)
Q Consensus 103 ~L 104 (113)
+|
T Consensus 67 ~L 68 (69)
T cd05746 67 VL 68 (69)
T ss_pred Ee
Confidence 76
No 92
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.50 E-value=2.6e-13 Score=82.46 Aligned_cols=80 Identities=16% Similarity=0.087 Sum_probs=58.5
Q ss_pred eeEeecceEEEecCCcEEEEEEEcc-CCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080 8 ILTAFGQISTGFLAVFSYSDKTVRD-IVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNG 86 (113)
Q Consensus 8 i~~~~~~~~tv~~G~~a~L~C~v~~-~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G 86 (113)
|....+..+.+.+|++++|.|.+.+ .+.+.+.|+|++.. + ..+.. ..+.+|.|.+++++|+|
T Consensus 3 ~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~--~---------~~~~~------~~~~~L~I~~v~~~DsG 65 (85)
T cd05754 3 VTVEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGG--L---------PSRAM------DFNGILTIRNVQLSDAG 65 (85)
T ss_pred EEecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCc--C---------CCccc------ccCCEEEECCCCHHHCE
Confidence 4445566788999999999999974 57789999997532 1 11111 12458999999999999
Q ss_pred EEEEeec-CCCCeeEEEEe
Q psy14080 87 TYECQAQ-PYTTTSHSQNA 104 (113)
Q Consensus 87 ~Y~C~~~-~~~~~s~~~~L 104 (113)
.|+|.+. ..+..+..+.|
T Consensus 66 ~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 66 TYVCTGSNMLDTDEATATL 84 (85)
T ss_pred EEEEEEeccCCeEeEEEEE
Confidence 9999994 45666666654
No 93
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.50 E-value=4.9e-13 Score=82.87 Aligned_cols=84 Identities=18% Similarity=0.177 Sum_probs=60.0
Q ss_pred eecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccC-----CCCCC
Q psy14080 11 AFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFL-----QKRDN 85 (113)
Q Consensus 11 ~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v-----~~~D~ 85 (113)
..+.+.++.+|+++.|.|.+.+.+.+.+.|+|. +..+.. ..+.|+.+. .+.+|.|.++ ..+|+
T Consensus 4 ~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~--g~~l~~-----~~~~~~~~~-----~~~~l~i~~v~~~~~~~~D~ 71 (95)
T cd05722 4 SEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKD--GVLLNL-----VSDERRQQL-----PNGSLLITSVVHSKHNKPDE 71 (95)
T ss_pred ECCCCeEEcCCCCEEEeeecccCCCCEEEEEEC--CeECcc-----ccCcceEEc-----cCCeEEEeeeeccCCCCCcC
Confidence 345667888999999999999999999999983 333321 123345443 2346777777 58999
Q ss_pred EEEEEeec-C-CCCe-eEEEEece
Q psy14080 86 GTYECQAQ-P-YTTT-SHSQNAPG 106 (113)
Q Consensus 86 G~Y~C~~~-~-~~~~-s~~~~L~V 106 (113)
|.|.|.+. . .+.. ++.+.|.|
T Consensus 72 G~Y~C~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 72 GFYQCVAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred EEEEEEEECCccCcEEEeeeEEeC
Confidence 99999995 4 4554 77888765
No 94
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.50 E-value=1.2e-12 Score=77.07 Aligned_cols=83 Identities=20% Similarity=0.251 Sum_probs=62.3
Q ss_pred ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080 14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93 (113)
Q Consensus 14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 93 (113)
..+.+.+|+++.|.|.+.+.+...+.|++. +...+. .++|+..... ....+|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~-~~~~v~-------~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~v~ 71 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQ-GGKLLA-------ESGRFSVSRS--GSNSTLTISNVTPEDSGTYTCAAT 71 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEEC-CCEEcC-------CCCcEEEEEc--CCeeEEEEEeeccccCeEEEEEEE
Confidence 346788999999999999887889999986 222221 3567776642 236799999999999999999996
Q ss_pred -CCCCeeEEEEece
Q psy14080 94 -PYTTTSHSQNAPG 106 (113)
Q Consensus 94 -~~~~~s~~~~L~V 106 (113)
........++|.|
T Consensus 72 ~~~~~~~~~~~l~V 85 (86)
T smart00410 72 NSSGSASSTTTLTV 85 (86)
T ss_pred cCCCeEEEEEEEEE
Confidence 4444555577766
No 95
>smart00409 IG Immunoglobulin.
Probab=99.50 E-value=1.2e-12 Score=77.07 Aligned_cols=83 Identities=20% Similarity=0.251 Sum_probs=62.3
Q ss_pred ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080 14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93 (113)
Q Consensus 14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 93 (113)
..+.+.+|+++.|.|.+.+.+...+.|++. +...+. .++|+..... ....+|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~-~~~~v~-------~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~v~ 71 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQ-GGKLLA-------ESGRFSVSRS--GSNSTLTISNVTPEDSGTYTCAAT 71 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEEC-CCEEcC-------CCCcEEEEEc--CCeeEEEEEeeccccCeEEEEEEE
Confidence 346788999999999999887889999986 222221 3567776642 236799999999999999999996
Q ss_pred -CCCCeeEEEEece
Q psy14080 94 -PYTTTSHSQNAPG 106 (113)
Q Consensus 94 -~~~~~s~~~~L~V 106 (113)
........++|.|
T Consensus 72 ~~~~~~~~~~~l~V 85 (86)
T smart00409 72 NSSGSASSTTTLTV 85 (86)
T ss_pred cCCCeEEEEEEEEE
Confidence 4444555577766
No 96
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.49 E-value=2.2e-13 Score=80.10 Aligned_cols=65 Identities=14% Similarity=0.169 Sum_probs=49.2
Q ss_pred EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEEE
Q psy14080 24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHSQ 102 (113)
Q Consensus 24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~~ 102 (113)
++|.|.+.+.|.+.+.|||. +..+. .| .....|.|.+++.+|+|.|+|.+ +..+..++..
T Consensus 1 ~~l~c~v~g~P~P~v~W~kd--g~~l~---------~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~ 61 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKD--GKLIS---------GK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRI 61 (67)
T ss_pred CEEEEEEEEeCCCEEEEEEC--CEECc---------cc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEE
Confidence 47999999999999999983 33331 11 12459999999999999999999 4557666666
Q ss_pred Eecee
Q psy14080 103 NAPGL 107 (113)
Q Consensus 103 ~L~V~ 107 (113)
.|.|.
T Consensus 62 ~~~l~ 66 (67)
T cd05863 62 SLELI 66 (67)
T ss_pred EEEEE
Confidence 66553
No 97
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.49 E-value=2.1e-13 Score=80.64 Aligned_cols=68 Identities=13% Similarity=0.188 Sum_probs=49.4
Q ss_pred EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-CCCCeeEEE
Q psy14080 24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PYTTTSHSQ 102 (113)
Q Consensus 24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-~~~~~s~~~ 102 (113)
+.|.|.+.+.|.+.+.|||. +..+. .+.|+.. ...+|.|.+++.+|+|.|+|.+. ..+..+..+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~--g~~l~-------~~~~~~~------~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~ 65 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKN--GKLIS-------EKNRTKK------SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRL 65 (71)
T ss_pred CEEEeEEEEeCCCEEEEEEC--CEECC-------CCCEEEc------CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEE
Confidence 46999999999999999983 33332 2234432 24689999999999999999994 556555555
Q ss_pred Eece
Q psy14080 103 NAPG 106 (113)
Q Consensus 103 ~L~V 106 (113)
.+.|
T Consensus 66 ~~~~ 69 (71)
T cd04976 66 TFTL 69 (71)
T ss_pred EEEE
Confidence 5544
No 98
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.49 E-value=4e-13 Score=81.92 Aligned_cols=78 Identities=18% Similarity=0.124 Sum_probs=53.8
Q ss_pred CCcEEEEEEEccCCCCEEEEEecCCC--eEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCC-C-
Q psy14080 21 AVFSYSDKTVRDIVKVRVSWVRRRDW--HILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY-T- 96 (113)
Q Consensus 21 G~~a~L~C~v~~~~~~~V~W~k~~~~--~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~- 96 (113)
|++++|.|.+.+.+.+.+.|++.... ..+. ...+..+. ......+|.|.+++.+|+|.|.|.+... .
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-------~~~~~~~~--~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~ 71 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIP-------EVEEVKVP--ATTLRSTLTFPHATVEDSGTYECAAHESTQD 71 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCce-------EEEEEecC--CcEEEEEEEECCCCcCCCEEEEEEEEECccC
Confidence 78999999999988889999874321 1110 00111111 1123569999999999999999999542 2
Q ss_pred -CeeEEEEecee
Q psy14080 97 -TTSHSQNAPGL 107 (113)
Q Consensus 97 -~~s~~~~L~V~ 107 (113)
..+..++|.|.
T Consensus 72 ~~~~~sv~i~V~ 83 (84)
T cd05861 72 QKAFKKVNITVH 83 (84)
T ss_pred cceeEEEEEEEe
Confidence 56778888874
No 99
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.48 E-value=8.1e-13 Score=82.12 Aligned_cols=80 Identities=20% Similarity=0.172 Sum_probs=55.1
Q ss_pred ecceEEEe---cCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCC-CCCCEE
Q psy14080 12 FGQISTGF---LAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ-KRDNGT 87 (113)
Q Consensus 12 ~~~~~tv~---~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~D~G~ 87 (113)
.+.++.+. +|++++|.|.+.+.+.+.|.|+|. +..+.. ..+.|+.+. +.+|.|.++. .+|+|.
T Consensus 7 ~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~--g~~l~~-----~~~~~~~~~------~g~L~i~~~~~~~D~G~ 73 (94)
T cd05848 7 EPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRN--GTEIDT-----ESDYRYSLI------DGNLIISNPSEVKDSGR 73 (94)
T ss_pred CCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEEC--CeECcc-----CCCceEEee------CCeEEEccCCccCcCEE
Confidence 34444443 579999999999999999999983 333321 123455443 3489999985 799999
Q ss_pred EEEeec-CCCCe-eEEEEe
Q psy14080 88 YECQAQ-PYTTT-SHSQNA 104 (113)
Q Consensus 88 Y~C~~~-~~~~~-s~~~~L 104 (113)
|.|.+. ..+.. ++.+.|
T Consensus 74 Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 74 YQCLATNSIGSILSREALL 92 (94)
T ss_pred EEEEEEcCCCeEEeccEEE
Confidence 999994 44544 555555
No 100
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.48 E-value=1.9e-13 Score=79.96 Aligned_cols=70 Identities=17% Similarity=0.315 Sum_probs=52.9
Q ss_pred EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEEE
Q psy14080 24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHSQ 102 (113)
Q Consensus 24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~~ 102 (113)
++|.|.+.+.|.+.+.|+|.+. . + ...|.... ....+|.|.+++.+|+|.|+|.+ +..+..+..+
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~-~-~--------~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 66 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGG-E-L--------PADRTKFE----NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTI 66 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCe-E-C--------CCCceeEe----cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEE
Confidence 4799999999999999998542 1 1 12233322 13458999999999999999999 5667888888
Q ss_pred Eecee
Q psy14080 103 NAPGL 107 (113)
Q Consensus 103 ~L~V~ 107 (113)
.|.|+
T Consensus 67 ~l~V~ 71 (71)
T cd05731 67 SVTVE 71 (71)
T ss_pred EEEEC
Confidence 88874
No 101
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.47 E-value=5.9e-13 Score=80.74 Aligned_cols=80 Identities=19% Similarity=0.119 Sum_probs=52.7
Q ss_pred CCcEEEEEEEccC--CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC-CCC
Q psy14080 21 AVFSYSDKTVRDI--VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP-YTT 97 (113)
Q Consensus 21 G~~a~L~C~v~~~--~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~-~~~ 97 (113)
|++++|.|.+.+. +.+.+.|++...... ... ....|.... +......+|.|.+++.+|+|.|+|.+.. .+.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~--~~~---~~~~~~~~~-~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~ 74 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRG--RGK---SMVTRQSLS-EATELSSTLTIPNATLKDSGTYTCAASSGTMD 74 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccC--Cce---Eeecccccc-cceEEEEEEEECCCChhhCEEEEEEEccCCCc
Confidence 7899999999988 678999976442110 000 001122111 1112356999999999999999999954 456
Q ss_pred eeEEEEece
Q psy14080 98 TSHSQNAPG 106 (113)
Q Consensus 98 ~s~~~~L~V 106 (113)
.+..+.|.|
T Consensus 75 ~~~s~~v~v 83 (84)
T cd05742 75 QKESTKVNI 83 (84)
T ss_pred eEEEEEEEE
Confidence 666666654
No 102
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.47 E-value=6.2e-13 Score=81.94 Aligned_cols=68 Identities=21% Similarity=0.194 Sum_probs=51.9
Q ss_pred cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080 13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92 (113)
Q Consensus 13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 92 (113)
+++.++.+|+++.|.|.+.+ +.+.|.|+|. +..+.. .+.|+.+. +..|.|.|++.+|+|.|.|.+
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~n--g~~i~~------~~~r~~~~------~~~L~I~nv~~~DsG~Y~C~a 67 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFD--GKVLTP------ESAKYLLY------RDGLLIFNASEADAGRYQCLS 67 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEEC--CEECCC------CCceEEEE------CCcEEEeCCCHHHCEEEEEEE
Confidence 45678999999999999864 5678999884 333321 23577654 336999999999999999999
Q ss_pred cCC
Q psy14080 93 QPY 95 (113)
Q Consensus 93 ~~~ 95 (113)
...
T Consensus 68 ~e~ 70 (87)
T cd05873 68 VEK 70 (87)
T ss_pred Eec
Confidence 654
No 103
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.47 E-value=6.6e-13 Score=82.52 Aligned_cols=83 Identities=14% Similarity=0.112 Sum_probs=57.3
Q ss_pred eEeecceEEEecC---CcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCC-CCC
Q psy14080 9 LTAFGQISTGFLA---VFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ-KRD 84 (113)
Q Consensus 9 ~~~~~~~~tv~~G---~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~D 84 (113)
+...+.++.+.+| .++.|.|.+.+.+.+.+.|+|.. ..+. ..+.|+.+. +..|.|.++. .+|
T Consensus 4 f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~--~~i~------~~~~~~~~~------~g~L~I~~~~~~~D 69 (93)
T cd05849 4 FEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNN--LDID------LTNDRYSMV------GGNLVINNPDKYKD 69 (93)
T ss_pred EEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECC--EEcc------CCCCeEEEE------CCEEEECcCCcCCC
Confidence 3344555555544 48999999999999999999843 2221 124577553 3489999985 799
Q ss_pred CEEEEEeec-CCCCe-eEEEEec
Q psy14080 85 NGTYECQAQ-PYTTT-SHSQNAP 105 (113)
Q Consensus 85 ~G~Y~C~~~-~~~~~-s~~~~L~ 105 (113)
+|.|.|.+. ..+.. ++.++|.
T Consensus 70 ~G~Y~C~A~N~~G~~~s~~a~l~ 92 (93)
T cd05849 70 AGRYVCIVSNIYGKVRSREATLS 92 (93)
T ss_pred CEEEEEEEEeCcceEEEccEEEe
Confidence 999999995 44543 5666653
No 104
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.46 E-value=2.3e-12 Score=82.14 Aligned_cols=81 Identities=12% Similarity=0.120 Sum_probs=60.5
Q ss_pred cCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCC--CCcEEEEEccCC-CCCCEEEEEee-cCC
Q psy14080 20 LAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDG--SDDWNLQIKFLQ-KRDNGTYECQA-QPY 95 (113)
Q Consensus 20 ~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~--~~~~~L~I~~v~-~~D~G~Y~C~~-~~~ 95 (113)
.|.++.|.|.+.+.+.+.+.|+|. +..+. ..++||....... ....+|+|.++. .+|.|.|.|.+ +..
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~--g~~l~------~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~ 93 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKN--GVPLD------LGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSL 93 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEEC--CEECC------CCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCC
Confidence 578999999999999999999983 33332 1245776442111 124689999997 69999999999 566
Q ss_pred CCeeEEEEeceec
Q psy14080 96 TTTSHSQNAPGLG 108 (113)
Q Consensus 96 ~~~s~~~~L~V~g 108 (113)
+..+..+.|.|.+
T Consensus 94 G~~~~~i~L~~~~ 106 (109)
T cd05773 94 GEDSLDIQLVSTS 106 (109)
T ss_pred ccCcEEEEEEecC
Confidence 8888889998865
No 105
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.46 E-value=7.5e-13 Score=78.72 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=55.9
Q ss_pred EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEEE
Q psy14080 24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHSQ 102 (113)
Q Consensus 24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~~ 102 (113)
|.|.|.+.+.|.+.|.|+|.. ..+..+ ...|+.... +...|.|.+++.+|+|.|.|.+ +..+..+..+
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~--~~l~~~-----~~~~~~~~~----~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 69 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNG--MDITPK-----LSKQLTLIA----NGSELHISNVRYEDTGAYTCIAKNEAGVDEDIS 69 (76)
T ss_pred CEeEeEeeecCCCEEEEEECC--EECCCC-----CCccEEEeC----CCCEEEECcCCcccCEEEEEEEEcCCCCcceEE
Confidence 579999999999999999843 222211 134665542 3448999999999999999999 4567888889
Q ss_pred Eeceec
Q psy14080 103 NAPGLG 108 (113)
Q Consensus 103 ~L~V~g 108 (113)
.|.|+.
T Consensus 70 ~l~V~~ 75 (76)
T cd05736 70 SLFVED 75 (76)
T ss_pred EEEEEc
Confidence 998864
No 106
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=99.46 E-value=2.8e-12 Score=82.99 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=63.2
Q ss_pred cCCcEEEEEEEccCC-----------CCEEEEEecC---------CCeEEEe-cceEE-cC--CCCEEEEEe-CCCCcEE
Q psy14080 20 LAVFSYSDKTVRDIV-----------KVRVSWVRRR---------DWHILTS-GVLTY-TN--DARFQVIHT-DGSDDWN 74 (113)
Q Consensus 20 ~G~~a~L~C~v~~~~-----------~~~V~W~k~~---------~~~~l~~-~~~~~-~~--~~R~~~~~~-~~~~~~~ 74 (113)
.|++|+|+|.+.-.+ ...|.|+|.. ...++.+ +.... .. .+|..+..+ ...++.+
T Consensus 1 ~~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~as 80 (117)
T cd05901 1 LSGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDAS 80 (117)
T ss_pred CCCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceE
Confidence 478999999998332 3589999962 1233333 32222 11 357776532 2457889
Q ss_pred EEEccCCCCCCEEEEEeecC-CCCeeEEEEeceecc
Q psy14080 75 LQIKFLQKRDNGTYECQAQP-YTTTSHSQNAPGLGD 109 (113)
Q Consensus 75 L~I~~v~~~D~G~Y~C~~~~-~~~~s~~~~L~V~g~ 109 (113)
|+|.+++.+|+|.|.|.+.. ....+..+.|.|.|.
T Consensus 81 L~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~Gv 116 (117)
T cd05901 81 LTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSGV 116 (117)
T ss_pred EEEcccccccCEEEEEEEEECCcccEEEEEEEEEEE
Confidence 99999999999999999964 356688899999985
No 107
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=99.45 E-value=1.7e-12 Score=89.43 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=69.4
Q ss_pred ceEEEecCCcEEEEEEEc-cCCCCEEEEEecCCCeEEEec--ceEEcC--CCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080 14 QISTGFLAVFSYSDKTVR-DIVKVRVSWVRRRDWHILTSG--VLTYTN--DARFQVIHTDGSDDWNLQIKFLQKRDNGTY 88 (113)
Q Consensus 14 ~~~tv~~G~~a~L~C~v~-~~~~~~V~W~k~~~~~~l~~~--~~~~~~--~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y 88 (113)
..++|.+|++|.|.|... ....+.|.|+|+.. .+..++ ...+.. .+|++.. ..+..+.+|+|++|+.+|+|.|
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~-~IatY~~~g~~i~~~Fk~Rve~m-S~s~~~StItIknVt~sDeGcY 100 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNK-TIAGYGPCGPVIVDKFKNKIEYL-SKSFNESTILIKNVSLKDNGCY 100 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCC-CEEEEecCCcEEChhhcCeEEEe-ccCCCcceEEEEeCChhhCeEE
Confidence 357899999999999985 44567899999754 222221 122222 2488742 2445678999999999999999
Q ss_pred EEeecCCC---CeeEEEEeceeccc
Q psy14080 89 ECQAQPYT---TTSHSQNAPGLGDL 110 (113)
Q Consensus 89 ~C~~~~~~---~~s~~~~L~V~g~~ 110 (113)
+|.+++.| ..+..+-|.|.+++
T Consensus 101 ~C~F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 101 TCIFNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEEEEecCCCCCceeEEEEEEEchh
Confidence 99998764 55788899998875
No 108
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.45 E-value=3.4e-12 Score=79.27 Aligned_cols=84 Identities=19% Similarity=0.141 Sum_probs=58.6
Q ss_pred eEeecceEEEecC---CcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCC-CCC
Q psy14080 9 LTAFGQISTGFLA---VFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ-KRD 84 (113)
Q Consensus 9 ~~~~~~~~tv~~G---~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~D 84 (113)
+...++++.+.+| ++|+|.|.+.+.+.+.+.|+|. +..+.. ..+.|+.+. +.+|.|.++. .+|
T Consensus 4 f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~--g~~l~~-----~~~~~~~~~------~g~L~I~~~~~~~D 70 (94)
T cd05850 4 FEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMN--GTEIKF-----APESRYTLV------AGNLVINNPQKARD 70 (94)
T ss_pred eEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEEC--CEECcc-----CCCceEEEE------CCeEEEccCCccCc
Confidence 3445666666555 5899999999999999999984 333321 124566654 3479998866 699
Q ss_pred CEEEEEeec-CCCCe-eEEEEec
Q psy14080 85 NGTYECQAQ-PYTTT-SHSQNAP 105 (113)
Q Consensus 85 ~G~Y~C~~~-~~~~~-s~~~~L~ 105 (113)
+|.|.|.+. ..+.. +..+.|.
T Consensus 71 ~G~Y~C~A~N~~G~~~s~~a~l~ 93 (94)
T cd05850 71 AGSYQCLAINRCGTVVSREANLR 93 (94)
T ss_pred CEEEEEEEEcCcCcEEEEEEEEe
Confidence 999999994 44543 5666663
No 109
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.44 E-value=9.1e-13 Score=79.50 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=57.6
Q ss_pred eeEeecceEEEecCCcEEEEEEEccCCC-CEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080 8 ILTAFGQISTGFLAVFSYSDKTVRDIVK-VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNG 86 (113)
Q Consensus 8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~-~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G 86 (113)
+.+..++...+.+|++++|.|.+.+.+. ..+.|||. +..+. . ...+|.|.++ .+|+|
T Consensus 2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kn--g~~l~---------------~----~~~~l~i~~~-~~dsG 59 (78)
T cd05752 2 VVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHN--GKLLE---------------T----TTNSYRIRAA-NNDSG 59 (78)
T ss_pred eEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEEC--CEEee---------------c----cCCeEEEeec-ccCCE
Confidence 4455667788999999999999998764 46999983 22221 0 1347899999 99999
Q ss_pred EEEEeecCCCCeeEEEEece
Q psy14080 87 TYECQAQPYTTTSHSQNAPG 106 (113)
Q Consensus 87 ~Y~C~~~~~~~~s~~~~L~V 106 (113)
.|+|.+.. ...|..+.|.|
T Consensus 60 ~Y~C~a~~-~~~S~~v~l~V 78 (78)
T cd05752 60 EYRCQTQG-SSLSDPVHLEV 78 (78)
T ss_pred EeEEECCC-CcCCCCEEEeC
Confidence 99999965 47777788775
No 110
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.44 E-value=7.2e-13 Score=78.42 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=47.7
Q ss_pred EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCe--eE
Q psy14080 24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTT--SH 100 (113)
Q Consensus 24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~--s~ 100 (113)
+.|+|.+.+.|.+.|.|||. +..+. .+.++ . ...+|.|.+++++|+|.|+|.+ +..+.. +.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~--g~~l~-------~~~~~--~-----~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~ 64 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKN--GQLIV-------LNHTF--K-----RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRH 64 (70)
T ss_pred CEEEeEEEEeCCCEEEEEEC--CEECC-------CCCEE--c-----cCCEEEECcCCHHHCEEEEEEEEECCCceeeEE
Confidence 46999999999999999994 33331 12222 1 2458999999999999999999 555544 45
Q ss_pred EEEece
Q psy14080 101 SQNAPG 106 (113)
Q Consensus 101 ~~~L~V 106 (113)
++.|.|
T Consensus 65 t~~l~v 70 (70)
T cd05864 65 TFQLVV 70 (70)
T ss_pred EEEEEC
Confidence 555543
No 111
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.43 E-value=2.1e-12 Score=76.06 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=50.6
Q ss_pred CCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCee
Q psy14080 21 AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTS 99 (113)
Q Consensus 21 G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s 99 (113)
|++++|.|.+.+.|.|.|.|+|.. ..+. ...|+.. +...|+|.+++ |+|.|.|.+ +..+..+
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g--~~l~-------~~~~~~~------~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~ 63 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGG--EELT-------KEDEMPV------GRNVLELTNIY--ESANYTCVAISSLGMIE 63 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECC--EECC-------Cccceec------CccEEEEeccc--cCeeEEEEEEeCCCEEE
Confidence 789999999999999999999843 2221 2334432 23489999974 899999999 5667777
Q ss_pred EEEEec
Q psy14080 100 HSQNAP 105 (113)
Q Consensus 100 ~~~~L~ 105 (113)
..++|+
T Consensus 64 ~~a~l~ 69 (69)
T cd05739 64 ATAQVT 69 (69)
T ss_pred EEEEEC
Confidence 777763
No 112
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.41 E-value=8.3e-13 Score=78.66 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=47.9
Q ss_pred EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCC-C--CeeE
Q psy14080 24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY-T--TTSH 100 (113)
Q Consensus 24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~--~~s~ 100 (113)
+.|.|.+.+.|.+.+.|+|.+ ..+.. ...|+.. +..+|.|.+++.+|+|.|+|.+... . ....
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg--~~l~~------~~~~~~~------~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~ 66 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDG--LPAAE------KCSRYHV------DGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNL 66 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECC--EECCC------CCcEEEe------CCCEEEECcCCHHHCEEEEEEEEccccceEeeE
Confidence 369999999999999999853 33211 1235543 2348999999999999999999542 2 2344
Q ss_pred EEEece
Q psy14080 101 SQNAPG 106 (113)
Q Consensus 101 ~~~L~V 106 (113)
.+.|.|
T Consensus 67 ~i~~~~ 72 (72)
T cd07702 67 TITLIV 72 (72)
T ss_pred EEEEEC
Confidence 445543
No 113
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.40 E-value=3.9e-12 Score=77.07 Aligned_cols=71 Identities=20% Similarity=0.187 Sum_probs=50.6
Q ss_pred EEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEE--E-eCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEE
Q psy14080 26 SDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVI--H-TDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHS 101 (113)
Q Consensus 26 L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~--~-~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~ 101 (113)
|+|++.+.|.|.|.|||. +..|. .++|+... . .......+|+|.+++.+|+|.|+|.+ +..+..+.+
T Consensus 3 i~~~v~G~P~Pti~W~kn--g~~l~-------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~ 73 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHE--GAILN-------ESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKN 73 (79)
T ss_pred EEEEEeEeCCCceEEEEC--CEECC-------CCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceE
Confidence 789999999999999983 44442 23333221 1 11123568999999999999999999 566777776
Q ss_pred EEec
Q psy14080 102 QNAP 105 (113)
Q Consensus 102 ~~L~ 105 (113)
+.+.
T Consensus 74 ~~~~ 77 (79)
T cd05855 74 VSAH 77 (79)
T ss_pred EEee
Confidence 6654
No 114
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.38 E-value=8.4e-12 Score=75.73 Aligned_cols=72 Identities=22% Similarity=0.195 Sum_probs=50.5
Q ss_pred EEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEe-----CCCCcEEEEEccCCCCCCEEEEEee-cCCCCe
Q psy14080 25 YSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHT-----DGSDDWNLQIKFLQKRDNGTYECQA-QPYTTT 98 (113)
Q Consensus 25 ~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~ 98 (113)
.|+|.+.+.|.|.|.|||. +..+. .+++...... ......+|.|.+++.+|+|.|.|.+ +..+..
T Consensus 2 ~i~~~v~G~P~P~v~W~k~--g~~i~-------~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~ 72 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHN--GAVLN-------ESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQD 72 (81)
T ss_pred eEEEEeEeeCCCcEEEEEC--CEECc-------CCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCe
Confidence 3799999999999999993 33332 1222222110 1234568999999999999999999 566777
Q ss_pred eEEEEec
Q psy14080 99 SHSQNAP 105 (113)
Q Consensus 99 s~~~~L~ 105 (113)
+..++|.
T Consensus 73 ~~~~~~~ 79 (81)
T cd04971 73 SKSISAH 79 (81)
T ss_pred eeEEEee
Confidence 7766654
No 115
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=99.37 E-value=6.8e-12 Score=80.70 Aligned_cols=78 Identities=15% Similarity=0.063 Sum_probs=59.7
Q ss_pred EEEecCCcEEEEEEEccCC--C-CEEEEEecCCCeEEEe------cceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080 16 STGFLAVFSYSDKTVRDIV--K-VRVSWVRRRDWHILTS------GVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNG 86 (113)
Q Consensus 16 ~tv~~G~~a~L~C~v~~~~--~-~~V~W~k~~~~~~l~~------~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G 86 (113)
..+..|++++|.|++++.. . ..++|+||.++.+-.. ++.......||....+.+++..+|+|.+++.+|+|
T Consensus 8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa 87 (115)
T cd05721 8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTD 87 (115)
T ss_pred eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCe
Confidence 4567788999999997643 3 6899999986532111 22111246899988888889999999999999999
Q ss_pred EEEEeec
Q psy14080 87 TYECQAQ 93 (113)
Q Consensus 87 ~Y~C~~~ 93 (113)
+|+|...
T Consensus 88 ~Y~Ca~e 94 (115)
T cd05721 88 IYFCKIE 94 (115)
T ss_pred EEEEEee
Confidence 9999884
No 116
>KOG3513|consensus
Probab=99.37 E-value=2.4e-12 Score=106.30 Aligned_cols=91 Identities=19% Similarity=0.261 Sum_probs=78.3
Q ss_pred CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080 5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD 84 (113)
Q Consensus 5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D 84 (113)
|........+.+.+..|.++.|.|...+.+.+.+.|.|... .+ ..++||.+. .+.+|.|.|++.+|
T Consensus 425 P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~-~~--------~~~~r~~i~-----edGtL~I~n~t~~D 490 (1051)
T KOG3513|consen 425 PVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGE-KL--------LQSGRIRIL-----EDGTLEISNVTRSD 490 (1051)
T ss_pred CCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCc-cc--------ccCceEEEC-----CCCcEEecccCccc
Confidence 77777788888899999999999999999999999987443 22 257899987 47899999999999
Q ss_pred CEEEEEee-cCCCCeeEEEEeceecc
Q psy14080 85 NGTYECQA-QPYTTTSHSQNAPGLGD 109 (113)
Q Consensus 85 ~G~Y~C~~-~~~~~~s~~~~L~V~g~ 109 (113)
+|.|+|.+ +..++.+..++|.|+..
T Consensus 491 aG~YtC~A~N~~G~a~~~~~L~Vkd~ 516 (1051)
T KOG3513|consen 491 AGKYTCVAENKLGKAESTGNLIVKDA 516 (1051)
T ss_pred CcEEEEEEEcccCccceEEEEEEecC
Confidence 99999999 56688999999999864
No 117
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.36 E-value=6.9e-12 Score=71.90 Aligned_cols=63 Identities=19% Similarity=0.164 Sum_probs=42.1
Q ss_pred CCcEEEEEEE-ccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080 21 AVFSYSDKTV-RDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92 (113)
Q Consensus 21 G~~a~L~C~v-~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 92 (113)
|++++|.|.+ .+.+...+.|+|.+....... ......+.......|.|.+++.+|+|.|.|.+
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~---------~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGS---------TTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEE---------EEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcc---------eeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 666778999999764221110 00111100001115999999999999999986
No 118
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=99.36 E-value=1.4e-11 Score=77.14 Aligned_cols=85 Identities=15% Similarity=0.138 Sum_probs=58.1
Q ss_pred CcEEEEEEEccC-CCCEEEEEecCCC--eEEEecc----eEEcC--CCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080 22 VFSYSDKTVRDI-VKVRVSWVRRRDW--HILTSGV----LTYTN--DARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92 (113)
Q Consensus 22 ~~a~L~C~v~~~-~~~~V~W~k~~~~--~~l~~~~----~~~~~--~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 92 (113)
++|+|+|.+... ....|.|.|..+. ..+..-. ..+.. .+|..+. +.+.++.+|.|+|++.+|+|.|.|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK-NYSLLDATIMLENVGFSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc-CCCCCccEEEEeCCCccccEEEEEEE
Confidence 468999999743 3458999887532 2222111 11111 2577765 35667889999999999999999999
Q ss_pred cCCC--CeeEEEEecee
Q psy14080 93 QPYT--TTSHSQNAPGL 107 (113)
Q Consensus 93 ~~~~--~~s~~~~L~V~ 107 (113)
.+.| +.+...+|.|+
T Consensus 80 ~tfP~G~~~~~~~l~~~ 96 (96)
T cd05887 80 VTFPLGNTQSSTTVTVL 96 (96)
T ss_pred EeCCCCCeeEEEEEEEC
Confidence 7665 56677777764
No 119
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=99.36 E-value=8e-12 Score=79.47 Aligned_cols=85 Identities=11% Similarity=0.012 Sum_probs=57.7
Q ss_pred EEecCCcEEEEEEEccCCCCEEEEEecCC---C-eEEEe--cceEE----cCCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080 17 TGFLAVFSYSDKTVRDIVKVRVSWVRRRD---W-HILTS--GVLTY----TNDARFQVIHTDGSDDWNLQIKFLQKRDNG 86 (113)
Q Consensus 17 tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~-~~l~~--~~~~~----~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G 86 (113)
.+.+|++|.|+|.........+.|||... . .++.+ +.... .-.+|..+. .+.+|.|++++.+|+|
T Consensus 9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~-----~ngSL~I~~v~~~D~G 83 (105)
T cd05774 9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIY-----PNGSLLIQNVTQKDTG 83 (105)
T ss_pred cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEe-----CCCcEEEecCCcccCE
Confidence 57889999999986544455899999642 1 23222 11111 124677776 3669999999999999
Q ss_pred EEEEeecCC--CCeeEEEEece
Q psy14080 87 TYECQAQPY--TTTSHSQNAPG 106 (113)
Q Consensus 87 ~Y~C~~~~~--~~~s~~~~L~V 106 (113)
.|.|.+... ......+.|.|
T Consensus 84 ~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 84 FYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred EEEEEEEeCCccEEEEEEEEEC
Confidence 999999543 34455666654
No 120
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.35 E-value=1.1e-11 Score=73.72 Aligned_cols=73 Identities=18% Similarity=0.268 Sum_probs=48.9
Q ss_pred EEEEEEEcc-CCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-CCCCeeEE
Q psy14080 24 SYSDKTVRD-IVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PYTTTSHS 101 (113)
Q Consensus 24 a~L~C~v~~-~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-~~~~~s~~ 101 (113)
+.|.|.+.+ .+.+.+.|||.. ..+.... ....|+.+. ......+|.|.+++.+|+|.|+|.+. ..+..+..
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g--~~i~~~~---~~~~~~~~~--~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~ 73 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNG--KEIGAKN---KPDNKIKIR--KKKKSSELQISKASLADNGEYKCMVSSKLGNDSVT 73 (76)
T ss_pred CEEEEecccCCCCCceEEEECC--cccccCC---CCCceEEEE--eCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEE
Confidence 479999864 577899999953 2222111 113455543 23456799999999999999999995 45666655
Q ss_pred EE
Q psy14080 102 QN 103 (113)
Q Consensus 102 ~~ 103 (113)
++
T Consensus 74 ~~ 75 (76)
T cd05895 74 AN 75 (76)
T ss_pred Ee
Confidence 54
No 121
>PHA03376 BARF1; Provisional
Probab=99.35 E-value=1.1e-11 Score=85.75 Aligned_cols=83 Identities=18% Similarity=0.231 Sum_probs=60.4
Q ss_pred eecceEEEecCCcEEEEEEEcc---CCCCEEEEEecC---CCeEEEec-ceE----EcCCCCEEEEEeCCCCcEEEEEcc
Q psy14080 11 AFGQISTGFLAVFSYSDKTVRD---IVKVRVSWVRRR---DWHILTSG-VLT----YTNDARFQVIHTDGSDDWNLQIKF 79 (113)
Q Consensus 11 ~~~~~~tv~~G~~a~L~C~v~~---~~~~~V~W~k~~---~~~~l~~~-~~~----~~~~~R~~~~~~~~~~~~~L~I~~ 79 (113)
..++.+++..|+.|.|+|.+.. .....|.|||-. +..++..+ ... +....|+.+.. +.++++|.|.+
T Consensus 16 ~sg~pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~--~~gnvsLvI~~ 93 (221)
T PHA03376 16 AAGQAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR--SANTFFLVVTA 93 (221)
T ss_pred ccCcchhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEe--cCCeEEEEEEe
Confidence 5566899999999999999872 245689999943 22334332 211 22245777653 45899999999
Q ss_pred CCCCCCEEEEEeecCC
Q psy14080 80 LQKRDNGTYECQAQPY 95 (113)
Q Consensus 80 v~~~D~G~Y~C~~~~~ 95 (113)
++++|.|+|.|.+...
T Consensus 94 l~lSDdGtY~C~fQkg 109 (221)
T PHA03376 94 ANISHDGNYLCRMKLG 109 (221)
T ss_pred eeecCCceEEEEEEcC
Confidence 9999999999999754
No 122
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.35 E-value=5.1e-11 Score=74.93 Aligned_cols=92 Identities=17% Similarity=0.246 Sum_probs=64.6
Q ss_pred CceeeEeecceEEEecCCcEEEEEEEccCCC-CEEEEEecCCCeEEEecceEEcCCCCEEEEEe--CCCCcEEEEEccCC
Q psy14080 5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVK-VRVSWVRRRDWHILTSGVLTYTNDARFQVIHT--DGSDDWNLQIKFLQ 81 (113)
Q Consensus 5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~-~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~--~~~~~~~L~I~~v~ 81 (113)
||.| ...+...+.+|++|.|.|.+...|. ..|.|.+.+. .+.. ..+.||.+... ......+|+|.++.
T Consensus 2 pP~i--~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~--~i~~-----~~~~r~~I~~~~~~~g~~S~L~I~~~~ 72 (98)
T cd05898 2 PPII--SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKEN--VLES-----GTSERYTVERTSTGSGVLSTLTINNIM 72 (98)
T ss_pred CCEE--ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccc--cccC-----CCCCCEEEEEEccCCCcEEEEEECCCc
Confidence 4555 3334467889999999999965555 4677766432 2221 13579988642 23566799999999
Q ss_pred CCC-CEEEEEee-cCCCCeeEEEEec
Q psy14080 82 KRD-NGTYECQA-QPYTTTSHSQNAP 105 (113)
Q Consensus 82 ~~D-~G~Y~C~~-~~~~~~s~~~~L~ 105 (113)
.+| .|.|.|.+ +..+..+..+.|+
T Consensus 73 ~~d~~g~Y~C~a~N~~G~d~~~i~L~ 98 (98)
T cd05898 73 EADFQTHYNCTAWNSFGSGTAIIQLE 98 (98)
T ss_pred cccCCcEEEEEEEeCCccceEEEEeC
Confidence 877 89999999 5667877777763
No 123
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.35 E-value=3.1e-12 Score=80.02 Aligned_cols=74 Identities=16% Similarity=0.133 Sum_probs=58.3
Q ss_pred eeEeecceEEEecCCcEEEEEE-EccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080 8 ILTAFGQISTGFLAVFSYSDKT-VRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNG 86 (113)
Q Consensus 8 i~~~~~~~~tv~~G~~a~L~C~-v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G 86 (113)
+.....+.+.|.+|+++.|.|. -.+.+.+.|.|++.. ...+ ..+.|+.+. .+++|.|++|+.+|+|
T Consensus 5 ~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~-~~~i-------~~~~Ri~~~-----~~GnL~fs~v~~~D~g 71 (95)
T cd05845 5 WPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSD-LLHI-------TQDERVSMG-----QNGNLYFANVEEQDSH 71 (95)
T ss_pred CCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCC-Cccc-------cccccEEEC-----CCceEEEEEEehhhCC
Confidence 3345557789999999999998 578899999999643 2222 246788765 3589999999999999
Q ss_pred -EEEEeecC
Q psy14080 87 -TYECQAQP 94 (113)
Q Consensus 87 -~Y~C~~~~ 94 (113)
.|.|.+..
T Consensus 72 ~~Y~C~a~~ 80 (95)
T cd05845 72 PDYICHAHF 80 (95)
T ss_pred CCeEEEEEc
Confidence 89999964
No 124
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.35 E-value=9.6e-12 Score=75.56 Aligned_cols=76 Identities=12% Similarity=0.003 Sum_probs=54.3
Q ss_pred EeecceEEEecCCcEEEEEEEccCCCC-EEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080 10 TAFGQISTGFLAVFSYSDKTVRDIVKV-RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY 88 (113)
Q Consensus 10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~-~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y 88 (113)
+..++++.+.+|+++.|+|.+.+.|.+ .|.|+|. +..+. .++.. ....|.|.++ .|+|.|
T Consensus 2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~--g~~l~---------~~~~~------~~s~L~i~~~--~d~g~Y 62 (81)
T cd05749 2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQG--GSPLG---------DPPAP------SPSVLNVPGL--NETSKF 62 (81)
T ss_pred cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEEC--CEECC---------CCCCC------CCCEEEEccc--cCCeEE
Confidence 345677889999999999999999999 7999984 33321 12221 2348999887 589999
Q ss_pred EEeec-CCCC-eeEEEEe
Q psy14080 89 ECQAQ-PYTT-TSHSQNA 104 (113)
Q Consensus 89 ~C~~~-~~~~-~s~~~~L 104 (113)
.|.+. ..+. .++.+.|
T Consensus 63 ~C~A~N~~G~~~s~~a~~ 80 (81)
T cd05749 63 SCEAHNAKGVTTSRTGTV 80 (81)
T ss_pred EEEEEeccCcEEeeeEEe
Confidence 99994 4453 3455554
No 125
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.33 E-value=1.1e-11 Score=76.96 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=52.3
Q ss_pred EEEecCCcEEEEEEEccC-----CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080 16 STGFLAVFSYSDKTVRDI-----VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC 90 (113)
Q Consensus 16 ~tv~~G~~a~L~C~v~~~-----~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 90 (113)
..+.+|+++.|.|...+. +.+.|.|||.. ..+. +.+.... ....|.|.+++.+|+|.|+|
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~--~~i~--------~~~~~~~-----~~~~L~I~~v~~~DsG~YtC 69 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDC--KLLE--------GDRKRFV-----KGSKLLIQNVTEEDAGNYTC 69 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECC--EECC--------CCccEEe-----cCCEEEEeeCChhhCEEEEE
Confidence 467889999999987532 46799999843 3321 2222222 24599999999999999999
Q ss_pred eec-CCCCe----eEEEEecee
Q psy14080 91 QAQ-PYTTT----SHSQNAPGL 107 (113)
Q Consensus 91 ~~~-~~~~~----s~~~~L~V~ 107 (113)
.+. ..... +..++|.|+
T Consensus 70 ~~~n~~~~~~~~~t~t~~l~v~ 91 (92)
T cd05757 70 KLTFTHNGKQYNVTRTISLTVT 91 (92)
T ss_pred EEEecCCCEEEEEEEEEEEEEe
Confidence 994 44433 444555443
No 126
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=99.33 E-value=4.5e-11 Score=75.24 Aligned_cols=83 Identities=12% Similarity=0.167 Sum_probs=56.8
Q ss_pred cEEEEEEEccC-CC---CEEEEEecCC---CeEEEecce---EEc--CCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080 23 FSYSDKTVRDI-VK---VRVSWVRRRD---WHILTSGVL---TYT--NDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC 90 (113)
Q Consensus 23 ~a~L~C~v~~~-~~---~~V~W~k~~~---~~~l~~~~~---~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 90 (113)
+|+|+|.+... +. ..|.|.|..+ ..+..+... .+. -.+|.... +...++.+|.|+|++.+|+|.|.|
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~-~~~~~daSi~i~nl~~~D~G~Y~C 80 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFK-NPSFEDGTISLSRLELEDEGVYIC 80 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEc-CCCCCcceEEEcCCccccCEEEEE
Confidence 68999999743 21 2699988642 233332211 111 13677765 345678899999999999999999
Q ss_pred eecCCC--CeeEEEEece
Q psy14080 91 QAQPYT--TTSHSQNAPG 106 (113)
Q Consensus 91 ~~~~~~--~~s~~~~L~V 106 (113)
.+.+.| ..+..+.|.|
T Consensus 81 ~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 81 EFATFPTGNRESQLNLTV 98 (99)
T ss_pred EEEeCCCCCeEEEEEEEE
Confidence 998754 5677788877
No 127
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=99.32 E-value=4.4e-11 Score=74.92 Aligned_cols=85 Identities=16% Similarity=0.220 Sum_probs=59.2
Q ss_pred CcEEEEEEEccC-CCCEEEEEecCCC---eEEEe---cceEEcC--CCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080 22 VFSYSDKTVRDI-VKVRVSWVRRRDW---HILTS---GVLTYTN--DARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92 (113)
Q Consensus 22 ~~a~L~C~v~~~-~~~~V~W~k~~~~---~~l~~---~~~~~~~--~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 92 (113)
+.++|+|.+... ....|.|.|..++ .+... ....+.. .+|+.... ....+.+|.|+||+.+|+|.|.|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~-~~~~d~sI~i~nvt~~D~G~Y~C~~ 79 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLN-STREDMSLSFNNATEEDVGLYCCSL 79 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEec-CCCCccEEEEcCCCcccCEEEEEEE
Confidence 468999999743 3457899997532 33222 1112222 25777653 2346789999999999999999999
Q ss_pred cCCCCeeEEEEecee
Q psy14080 93 QPYTTTSHSQNAPGL 107 (113)
Q Consensus 93 ~~~~~~s~~~~L~V~ 107 (113)
.+.|..+......|.
T Consensus 80 ~t~P~g~~~~~i~~~ 94 (96)
T cd05889 80 VTYPQGSWEKVIEVV 94 (96)
T ss_pred EeCCCCCeEEEEEEE
Confidence 998887777776664
No 128
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.31 E-value=1.2e-11 Score=88.36 Aligned_cols=89 Identities=17% Similarity=0.147 Sum_probs=59.0
Q ss_pred ceEEEecCCcEEEEEEEcc-----------CCCCEEEEEecCCCeEEEecceEEcCCCCE---EEEEeC-CCCcEEEEEc
Q psy14080 14 QISTGFLAVFSYSDKTVRD-----------IVKVRVSWVRRRDWHILTSGVLTYTNDARF---QVIHTD-GSDDWNLQIK 78 (113)
Q Consensus 14 ~~~tv~~G~~a~L~C~v~~-----------~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~---~~~~~~-~~~~~~L~I~ 78 (113)
..+.+.+|++|.|+|.+.+ ..++.|.|+|.+ ...+..+ .+.|- .+..+. .....+|.|.
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~-s~~~v~~-----~~~~~~~~~i~~~~~~~r~~~L~I~ 103 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTD-SLAFVRD-----SGARTKIKKITHNEIGDRSENLWIG 103 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCC-eEEEEEc-----CCCccccccccccceecCCCeEEEC
Confidence 4578899999999999865 346799999953 2222111 12221 011100 1235699999
Q ss_pred cCCCCCCEEEEEeecC-CCCeeEEEEeceec
Q psy14080 79 FLQKRDNGTYECQAQP-YTTTSHSQNAPGLG 108 (113)
Q Consensus 79 ~v~~~D~G~Y~C~~~~-~~~~s~~~~L~V~g 108 (113)
+++.+|+|.|.|++.. ....+..+.|.|..
T Consensus 104 ~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~ 134 (227)
T PHA02826 104 NVINIDEGIYICTISSGNICEESTIRLTFDS 134 (227)
T ss_pred CCChHHCEEEEEEEEECCcceEEEEEEEEec
Confidence 9999999999999954 44556777787753
No 129
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.31 E-value=5.3e-12 Score=76.82 Aligned_cols=71 Identities=15% Similarity=0.117 Sum_probs=52.2
Q ss_pred EEecCCcEEEEEEEcc-CCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-C
Q psy14080 17 TGFLAVFSYSDKTVRD-IVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-P 94 (113)
Q Consensus 17 tv~~G~~a~L~C~v~~-~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-~ 94 (113)
.+.+|++++|.|.... .+...+.|||.+ ..+. + .....+|.|.+++.+|+|.|+|.+. .
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g--~~~~-----------~------~~~~~~l~I~~~~~~dsG~Y~C~~~~~ 70 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDG--KAKK-----------Y------SHSNSNLSIPQATLSDSGSYHCSGIIG 70 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECC--eEcc-----------c------cCCCceEEECccCHHHCEEEEEEEEeC
Confidence 6889999999999853 455689999843 1110 0 1134689999999999999999994 3
Q ss_pred C-CCeeEEEEece
Q psy14080 95 Y-TTTSHSQNAPG 106 (113)
Q Consensus 95 ~-~~~s~~~~L~V 106 (113)
. +..|..+.|.|
T Consensus 71 ~~~~~s~~~~i~~ 83 (83)
T cd05753 71 SYDYSSEPVSITV 83 (83)
T ss_pred CceecCCCEEEEC
Confidence 3 45677777765
No 130
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.30 E-value=3.9e-11 Score=70.68 Aligned_cols=70 Identities=19% Similarity=0.324 Sum_probs=48.1
Q ss_pred EEEEEEcc-CCCCEEEEEecCCCeEEEecceEEcCCCC-EEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEE
Q psy14080 25 YSDKTVRD-IVKVRVSWVRRRDWHILTSGVLTYTNDAR-FQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHS 101 (113)
Q Consensus 25 ~L~C~v~~-~~~~~V~W~k~~~~~~l~~~~~~~~~~~R-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~ 101 (113)
+|.|.+.+ .|.+.+.|+|.. ..+... .+.+ +.+. ......+|.|.+++.+|+|.|.|.+ +..+..+..
T Consensus 2 ~l~C~~~g~~P~p~~~W~k~g--~~l~~~-----~~~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 72 (75)
T cd05750 2 VLKCEATSEYPSLRFKWFKDG--KELNRK-----NKPRNIKIR--NKKKNSELQINKAKLADSGEYTCVVENILGNDTVT 72 (75)
T ss_pred EEEEEccCCCCCceEEEEcCC--eecccc-----CCcceEEEE--ecCceEEEEEccCCcccCeEEEEEEEEcCCceeEE
Confidence 69999999 888999999843 222211 1111 2222 2234679999999999999999999 455666655
Q ss_pred EE
Q psy14080 102 QN 103 (113)
Q Consensus 102 ~~ 103 (113)
++
T Consensus 73 ~~ 74 (75)
T cd05750 73 AN 74 (75)
T ss_pred Ee
Confidence 44
No 131
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.28 E-value=3.6e-11 Score=67.14 Aligned_cols=60 Identities=17% Similarity=0.226 Sum_probs=44.8
Q ss_pred cCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080 20 LAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP 94 (113)
Q Consensus 20 ~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 94 (113)
+|++++|.|.+.+.+.+.+.|+|.. ..+. .+.... .....|.|.+++.+|+|.|+|.+..
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~--~~~~---------~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~n 60 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDG--KPLP---------ESNRLS----ASGSTLTIKSVSLEDSGEYTCVAEN 60 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECC--EECC---------CCCEEe----cCCcEEEEeeCCcccCEEEEEEEec
Confidence 5899999999887788899999842 1111 122222 2456999999999999999999854
No 132
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.28 E-value=1.3e-11 Score=77.30 Aligned_cols=70 Identities=16% Similarity=0.098 Sum_probs=52.5
Q ss_pred ceEEEecCCcEEEEEEEc-cCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080 14 QISTGFLAVFSYSDKTVR-DIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92 (113)
Q Consensus 14 ~~~tv~~G~~a~L~C~v~-~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 92 (113)
..+.+.+|+.+.|.|.-. +.+.+.+.|+|......+. .++|..+.. .+++|.|.+|+.+|+|.|+|.+
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~-------~d~r~~~~~----~~G~L~fs~v~~~D~g~Y~C~A 79 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIP-------EDGRRFVSQ----TNGNLYIAKVEASDRGNYSCFV 79 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccc-------cCCCeEEeC----CCCcEEEeecCHhhCceeEEEE
Confidence 446789999999999875 5578899999965332221 244444431 4679999999999999999999
Q ss_pred cC
Q psy14080 93 QP 94 (113)
Q Consensus 93 ~~ 94 (113)
..
T Consensus 80 ~n 81 (96)
T cd05727 80 SS 81 (96)
T ss_pred Ee
Confidence 54
No 133
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.27 E-value=3e-11 Score=86.26 Aligned_cols=79 Identities=16% Similarity=0.144 Sum_probs=56.6
Q ss_pred eEEEecCCcEEEEEEEcc-----CCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080 15 ISTGFLAVFSYSDKTVRD-----IVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE 89 (113)
Q Consensus 15 ~~tv~~G~~a~L~C~v~~-----~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 89 (113)
+..+.+|+++.|.|...+ .+.+.|.|||. +..+. .++|+.+.. +..+|.|.+++.+|+|.|+
T Consensus 138 ~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKn--g~~l~-------~~~r~~~~~----~~~~L~I~~V~~~DsG~Yt 204 (227)
T PHA02826 138 NYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKN--GNIVL-------YTDRIQLRN----NNSTLVIKSATHDDSGIYT 204 (227)
T ss_pred cceEecCCCEEEEeeCCCCccccCCCceEEEEEC--CEECC-------CCCCEEEeC----CCCEEEECcCCHHhCEEEE
Confidence 346678999999999863 34689999994 33332 356777652 3458999999999999999
Q ss_pred EeecCC--C---CeeEEEEece
Q psy14080 90 CQAQPY--T---TTSHSQNAPG 106 (113)
Q Consensus 90 C~~~~~--~---~~s~~~~L~V 106 (113)
|.+... + ..++.++|.|
T Consensus 205 C~a~~~~~g~~y~~t~~~~~~~ 226 (227)
T PHA02826 205 CNLRFNKNSNNYNITKEYKVTI 226 (227)
T ss_pred EEEEEeECCEEEEEEEEEEEEE
Confidence 999642 2 3455555554
No 134
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.24 E-value=6.5e-11 Score=70.79 Aligned_cols=70 Identities=20% Similarity=0.251 Sum_probs=47.9
Q ss_pred EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCC----CCCEEEEEeec-CCCCe
Q psy14080 24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQK----RDNGTYECQAQ-PYTTT 98 (113)
Q Consensus 24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~~~-~~~~~ 98 (113)
++|.|.+.+.|.+.|.|+|. +..+.. ..+.|+.... .+.+|.|.++.. +|+|.|.|.+. ..+..
T Consensus 1 i~l~C~~~G~P~P~v~W~k~--g~~l~~-----~~~~~~~~~~----~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRN--GTHFDP-----EKDPRVTMKP----DSGTLVIDNMNGGRAEDYEGEYQCYASNELGTA 69 (77)
T ss_pred CEEEeeCcccCCCeEEEEEC--CeECCC-----CCCCCEEEeC----CCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcE
Confidence 47999999999999999983 333211 1245665432 356899998864 79999999994 44543
Q ss_pred -eEEEEe
Q psy14080 99 -SHSQNA 104 (113)
Q Consensus 99 -s~~~~L 104 (113)
+..++|
T Consensus 70 ~s~~~~l 76 (77)
T cd05733 70 ISNEIHL 76 (77)
T ss_pred EccccEE
Confidence 445544
No 135
>KOG3513|consensus
Probab=99.24 E-value=5.2e-11 Score=98.60 Aligned_cols=93 Identities=23% Similarity=0.256 Sum_probs=73.0
Q ss_pred CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080 4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR 83 (113)
Q Consensus 4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 83 (113)
+|+..+. ..++..+..|++++|.|.+.+.+.+.|.|+|. +..+... ..++|+++. ...|+|++|+++
T Consensus 330 a~P~w~~-~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkN--g~pl~~~----~r~~~~~i~------~g~L~is~v~~~ 396 (1051)
T KOG3513|consen 330 APPYWLQ-KPQDTEADTGSNVTLECKASGKPNPTVKWLKN--GEPLEPA----ERDPRYKID------DGTLIISNVQES 396 (1051)
T ss_pred cCchhhc-ccceeEecCCCCeEEEEEecCCCCCceEEeeC--CeecCcc----CCCcceEEe------CCEEEEEecccc
Confidence 3343333 55678889999999999999999999999984 3332211 246778886 559999999999
Q ss_pred CCEEEEEee-cCCCCeeEEEEeceecc
Q psy14080 84 DNGTYECQA-QPYTTTSHSQNAPGLGD 109 (113)
Q Consensus 84 D~G~Y~C~~-~~~~~~s~~~~L~V~g~ 109 (113)
|+|+|.|.+ +.++..-..++|.|+..
T Consensus 397 dsg~YQC~A~Nk~G~i~anA~L~V~a~ 423 (1051)
T KOG3513|consen 397 DSGVYQCIAENKYGTIYANAELKVLAS 423 (1051)
T ss_pred cCeEEEeeeecccceEeeeeEEEEEcc
Confidence 999999999 67788888899999864
No 136
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.24 E-value=7.1e-11 Score=72.46 Aligned_cols=79 Identities=15% Similarity=0.062 Sum_probs=58.6
Q ss_pred ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080 14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93 (113)
Q Consensus 14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 93 (113)
+++++.+|.++.|+|...+. ...+.|++++.. + ..+.|+... ..-|.|.+++++|+|.|.|...
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~--l-------~~~~r~~~~------~~GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTP--L-------NAQFSYRVG------TDGLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcc--c-------CCCcceEEe------CCCCEEEECCHhhCEEEEEEEe
Confidence 57899999999999999864 569999986532 2 235777765 2247899999999999999996
Q ss_pred CCCCe--eEEEEeceec
Q psy14080 94 PYTTT--SHSQNAPGLG 108 (113)
Q Consensus 94 ~~~~~--s~~~~L~V~g 108 (113)
..+.. -..+.|.|..
T Consensus 68 E~gf~~~~~~y~l~v~~ 84 (85)
T cd05872 68 EEGFQQLVASYSLNVVE 84 (85)
T ss_pred cCCCeEEEEEEEEEEeC
Confidence 55433 3555666543
No 137
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.24 E-value=8.6e-11 Score=70.45 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=48.6
Q ss_pred EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCC---C-CCCEEEEEeec-CCC-C
Q psy14080 24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ---K-RDNGTYECQAQ-PYT-T 97 (113)
Q Consensus 24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~---~-~D~G~Y~C~~~-~~~-~ 97 (113)
+.|.|.+.+.|.+.|.|+|.. ..+.. ..++|+.+.. .+.+|.|.+++ + +|+|.|.|.+. ..+ .
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g--~~~~~-----~~~~~~~~~~----~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNG--KFFNV-----AKDPRVSMRR----RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTA 69 (77)
T ss_pred CEEEEeccccCCCEEEEEECC--EEccC-----cCCCcEEEeC----CCceEEEeccCCCCCCCCCEEEEEEEEeccceE
Confidence 469999999999999999843 22211 2466776542 35689999874 2 46999999995 444 3
Q ss_pred eeEEEEe
Q psy14080 98 TSHSQNA 104 (113)
Q Consensus 98 ~s~~~~L 104 (113)
.+..+.|
T Consensus 70 ~s~~~~~ 76 (77)
T cd05875 70 LSNKILL 76 (77)
T ss_pred EEEEEEE
Confidence 4566655
No 138
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.22 E-value=1.1e-10 Score=74.02 Aligned_cols=85 Identities=8% Similarity=-0.004 Sum_probs=53.5
Q ss_pred ceEEEecCCcEEEEEEEcc-----------CCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080 14 QISTGFLAVFSYSDKTVRD-----------IVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQK 82 (113)
Q Consensus 14 ~~~tv~~G~~a~L~C~v~~-----------~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 82 (113)
..+.+.+|+++.|.|.... .....|.|||....... .........|.... ...|.|.++..
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~--~~~~~~~~~Ri~~~------~~~Lwf~Pa~~ 79 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEE--PIEIIFDGVRMSKE------EDSIWFRPAEL 79 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCC--CCcccccceeEEEe------CCEEEEEeCCh
Confidence 3467899999999999721 12347999995311100 00000011355443 55999999999
Q ss_pred CCCEEEEEeecC-CCCeeEEEEece
Q psy14080 83 RDNGTYECQAQP-YTTTSHSQNAPG 106 (113)
Q Consensus 83 ~D~G~Y~C~~~~-~~~~s~~~~L~V 106 (113)
+|+|.|+|++.. ..-....++|.|
T Consensus 80 eDSG~Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 80 QDSGLYTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred hhCeEEEEEECCCCcceEEEEEEEC
Confidence 999999999953 334444556654
No 139
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.20 E-value=3.5e-10 Score=69.47 Aligned_cols=64 Identities=19% Similarity=0.227 Sum_probs=46.5
Q ss_pred cCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCC-CCCCEEEEEeec-CCC
Q psy14080 20 LAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ-KRDNGTYECQAQ-PYT 96 (113)
Q Consensus 20 ~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~~~-~~~ 96 (113)
.|+++.|.|.+.+.+.+.+.|+|. ...+.. ..+.++... +..|.|.++. .+|+|.|.|.+. ..+
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~--~~~l~~-----~~~~~~~~~------~~~L~i~~~~~~~d~G~Y~C~a~N~~G 83 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMN--GTEIDD-----EPDSRYSLV------GGNLVISNPSKAKDAGRYQCLASNIVG 83 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEEC--CEECCC-----CCCCCEEEE------CCEEEEecCCccCCCEEEEEEEEcCCC
Confidence 356899999999888899999983 332211 124566554 3489999887 599999999995 444
No 140
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.19 E-value=1.7e-10 Score=69.16 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=46.6
Q ss_pred EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCC----CCCEEEEEeec-CCCCe
Q psy14080 24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQK----RDNGTYECQAQ-PYTTT 98 (113)
Q Consensus 24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~~~-~~~~~ 98 (113)
+.|.|.+.+.|.+.|.|+|.. ..+.. ..+.++.+.. .+.+|.|..+.. .|+|.|.|.+. ..+..
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g--~~l~~-----~~~~~~~~~~----~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNG--THFDI-----DKDPKVTMKP----NTGTLVINIMNGEKAEAYEGVYQCTARNERGAA 69 (77)
T ss_pred CEEEeeCcccCCCeEEEEECC--eECCC-----cCCCCEEEeC----CCceEEEeccccCCCCCCCEEEEEEEEcCCCeE
Confidence 479999999999999999842 22211 1345555432 345788887764 48999999995 44443
Q ss_pred -eEEEEe
Q psy14080 99 -SHSQNA 104 (113)
Q Consensus 99 -s~~~~L 104 (113)
+..+.|
T Consensus 70 ~s~~~~~ 76 (77)
T cd05874 70 VSNNIVI 76 (77)
T ss_pred EeeEEEE
Confidence 455554
No 141
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.18 E-value=2.5e-10 Score=69.81 Aligned_cols=82 Identities=15% Similarity=0.094 Sum_probs=51.0
Q ss_pred CCcEEEEEEEccCC--CCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC-CCC
Q psy14080 21 AVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP-YTT 97 (113)
Q Consensus 21 G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~-~~~ 97 (113)
|+++.|.|.+.+.+ ...+.|...+....... .....|..... ......+|.|.+++.+|+|.|+|.+.. ...
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~----~~~~~~~~~~~-~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~ 75 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAK----SVSENRRSLQE-HTELSSTLTIENVTLSDLGRYTCTASSGQMI 75 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccce----ecccccccccc-cceeeeEEEEecCCcccCEEEEEEEeecceE
Confidence 78999999998654 45779976542211000 00111111111 122456999999999999999999954 445
Q ss_pred eeEEEEecee
Q psy14080 98 TSHSQNAPGL 107 (113)
Q Consensus 98 ~s~~~~L~V~ 107 (113)
.....+|.|-
T Consensus 76 ~~~~t~~~V~ 85 (86)
T cd05862 76 AKNSTIVIVH 85 (86)
T ss_pred ecccEEEEEe
Confidence 5666676663
No 142
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.14 E-value=1.9e-10 Score=71.94 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=54.9
Q ss_pred EEEecCCcEEEEEEE-c----cCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080 16 STGFLAVFSYSDKTV-R----DIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC 90 (113)
Q Consensus 16 ~tv~~G~~a~L~C~v-~----~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 90 (113)
..+.+|.+..|.|.- . ....+.|.|||. ...|. ..+.||.... +...|.|.+|.++|+|.|+|
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd--~~~l~------~~~~~~~~~~----~~~~L~I~~v~~~D~G~YtC 72 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKD--SVLLD------KDNEKFYSLK----GSTYLHIIDVSLNDSGYYTC 72 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccC--CEECc------CCCcceEecC----CCCEEEEEEcChhhCEEEEE
Confidence 356778999999972 2 235578999984 33332 1234555431 23469999999999999999
Q ss_pred eec-CC-C---CeeEEEEeceec
Q psy14080 91 QAQ-PY-T---TTSHSQNAPGLG 108 (113)
Q Consensus 91 ~~~-~~-~---~~s~~~~L~V~g 108 (113)
.+. .. + ..++...|.|++
T Consensus 73 ~~~~~~~g~~y~vtr~~~l~v~~ 95 (95)
T cd05897 73 KLQFTHEGKKYNITRIIKLRIVK 95 (95)
T ss_pred EEEEeeCCEEEEEEEEEEEEEcC
Confidence 994 32 2 456777777753
No 143
>KOG4194|consensus
Probab=99.09 E-value=2.5e-10 Score=90.47 Aligned_cols=91 Identities=15% Similarity=0.174 Sum_probs=70.8
Q ss_pred eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080 9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY 88 (113)
Q Consensus 9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y 88 (113)
++..+.+.|...|+.|.|.|...|.|.|.|.|.|..+...-. ....|..+.. ++-.+-|.||+.+|+|+|
T Consensus 615 FtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPA------A~eRRl~Vmp----edd~f~Itnvk~eD~GiY 684 (873)
T KOG4194|consen 615 FTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPA------ARERRLHVMP----EDDVFFITNVKIEDQGIY 684 (873)
T ss_pred cccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCch------hhhheeeecC----CCCEEEEeccccccccee
Confidence 455667889999999999999999999999996633221111 1245666653 344778999999999999
Q ss_pred EEee-cCCCCeeEEEEeceecc
Q psy14080 89 ECQA-QPYTTTSHSQNAPGLGD 109 (113)
Q Consensus 89 ~C~~-~~~~~~s~~~~L~V~g~ 109 (113)
+|.+ +..+..+..++|.|.+.
T Consensus 685 tC~A~n~AG~isanAtL~V~e~ 706 (873)
T KOG4194|consen 685 TCTAQNVAGQISANATLTVLET 706 (873)
T ss_pred EEeeeccccceeeceEEEEecC
Confidence 9999 67789999999999876
No 144
>KOG4221|consensus
Probab=99.07 E-value=6.1e-10 Score=93.03 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=64.6
Q ss_pred ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080 12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ 91 (113)
Q Consensus 12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 91 (113)
...+.++.+|+++.|.|.+++.+.+.|.|.| + +..+.. .+.||.+. +..+|.|++++..|+|.|+|.
T Consensus 243 ~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlr-n-g~~i~~------ds~rivl~-----g~~slliS~a~~~dSg~YtC~ 309 (1381)
T KOG4221|consen 243 EPSNAVVVEGDDVVLECVVSGVPKPSVKWLR-N-GEKISV------DSYRIVLV-----GGSSLLISNATDDDSGKYTCR 309 (1381)
T ss_pred CCCccccccCCcEEEEEEecCCCCCceEEee-C-Ceeeee------cceEEEEe-----cccceEEeccccccCceEEEE
Confidence 3455678999999999999999999999998 3 333322 12466665 466999999999999999999
Q ss_pred ec-CCCCeeEEEEeceecc
Q psy14080 92 AQ-PYTTTSHSQNAPGLGD 109 (113)
Q Consensus 92 ~~-~~~~~s~~~~L~V~g~ 109 (113)
++ +.......+.|.|+..
T Consensus 310 Atn~~D~idasaev~V~a~ 328 (1381)
T KOG4221|consen 310 ATNTNDSIDASAEVTVLAP 328 (1381)
T ss_pred ecCCCcccccceEEEEEcC
Confidence 95 4455556677777653
No 145
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.06 E-value=3.1e-09 Score=62.51 Aligned_cols=70 Identities=21% Similarity=0.193 Sum_probs=51.9
Q ss_pred EEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCC
Q psy14080 16 STGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY 95 (113)
Q Consensus 16 ~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 95 (113)
..+.+|+++.|.|.+.+.+...+.|+|. ...+.. . . +. |.|.+++.+|+|.|.|.+...
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~--~~~~~~-------------~--~--~~--~~~~~~~~~~~g~y~C~~~~~ 67 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKN--GSPINS-------------S--Q--NG--LFIPNVSPEDSGNYTCRASNG 67 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEET--TEEEEE-------------E--S--SE--EEESSEEGGGTEEEEEEEEET
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeee--eeeeee-------------e--e--ee--eeeeeeccccCEEEEEEEEeC
Confidence 4688999999999999877789999983 222210 0 0 11 777999999999999999653
Q ss_pred --CCeeEEEEece
Q psy14080 96 --TTTSHSQNAPG 106 (113)
Q Consensus 96 --~~~s~~~~L~V 106 (113)
...+..++|.|
T Consensus 68 ~~~~~s~~~~v~V 80 (80)
T PF13895_consen 68 SGSNTSTSVNVTV 80 (80)
T ss_dssp TEEEEEEEEEEEE
T ss_pred CCCeEeeeEEeeC
Confidence 35567777765
No 146
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.05 E-value=2.4e-09 Score=79.91 Aligned_cols=84 Identities=15% Similarity=0.078 Sum_probs=54.0
Q ss_pred cceEEEecCCcEEEEEEEccCCC---CEEEEEecCCCeEEEecceEEcCCCCEEEEEeC------CCCcEEEEEccCCCC
Q psy14080 13 GQISTGFLAVFSYSDKTVRDIVK---VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTD------GSDDWNLQIKFLQKR 83 (113)
Q Consensus 13 ~~~~tv~~G~~a~L~C~v~~~~~---~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~------~~~~~~L~I~~v~~~ 83 (113)
+..+.+.+|++++|.|.+.+.+. +.|.|+|. +..+..+.. ..+.|+...... ......|+|.+|+.+
T Consensus 227 p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kn--g~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~ 302 (326)
T PHA02785 227 PEGVVTSIGSNLTIACRVSLRPPTTDADVFWISN--GMYYEEDDE--DGDGRISVANKIYTTDKRRVITSRLNINPVKEE 302 (326)
T ss_pred CCcEEecCCCcEEEEEEEECCCCCCCceEEEEEC--CEECCCcCC--CCceeEEEecCccccccceeeeEEEEECCcchh
Confidence 35667788999999999997664 48999883 333321100 012344432110 012458999999999
Q ss_pred CCEEEEEeecCCCCeeE
Q psy14080 84 DNGTYECQAQPYTTTSH 100 (113)
Q Consensus 84 D~G~Y~C~~~~~~~~s~ 100 (113)
|+|.|+|.+.+......
T Consensus 303 D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 303 DATTFTCMAFTIPSISK 319 (326)
T ss_pred cCeeeEEEEEeccCceE
Confidence 99999999965444433
No 147
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.04 E-value=6.8e-09 Score=65.51 Aligned_cols=92 Identities=14% Similarity=0.030 Sum_probs=65.1
Q ss_pred eeEeecceEEEecCCcEEEEEEEccCCCCE-EEEEecCCCeEEEecceEEcCCCCEEEEEeCCC--CcEEEEEccCCCCC
Q psy14080 8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVR-VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGS--DDWNLQIKFLQKRD 84 (113)
Q Consensus 8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~-V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~--~~~~L~I~~v~~~D 84 (113)
+....+..+.|.+|+++.|.|.+...|.+. +.|.+.... +... .+.-+... +.++ =...|++..++.+|
T Consensus 5 l~~~~~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~--l~~~-----~~~~~~~~-~~~~~rY~S~L~L~Rlk~~E 76 (101)
T cd05860 5 ITPVINTTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRT--LTNT-----SDHYVKSR-NESNNRYVSELHLTRLKGTE 76 (101)
T ss_pred EecCCCceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcc--cCcc-----ccceeEEe-ccCceEEEEEEEEeecChhh
Confidence 445677889999999999999999999886 999875422 1100 11111110 0011 12489999999999
Q ss_pred CEEEEEee-cCCCCeeEEEEecee
Q psy14080 85 NGTYECQA-QPYTTTSHSQNAPGL 107 (113)
Q Consensus 85 ~G~Y~C~~-~~~~~~s~~~~L~V~ 107 (113)
+|.|+|.+ +.....+.++.|.|.
T Consensus 77 ~G~YTf~a~N~~~~~s~tF~l~v~ 100 (101)
T cd05860 77 GGTYTFLVSNSDASASVTFNVYVN 100 (101)
T ss_pred CcEEEEEEECCCCeEEEEEEEEEe
Confidence 99999999 456788899998875
No 148
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=99.02 E-value=2e-09 Score=66.85 Aligned_cols=78 Identities=9% Similarity=-0.071 Sum_probs=50.5
Q ss_pred EEEecCCcEEEEEEEccCCCCEEEEEecCCCeEE-EecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080 16 STGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHIL-TSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP 94 (113)
Q Consensus 16 ~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l-~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 94 (113)
..+.+|++|+|.|.... ....+.|||++..... ..+. ....|+ ...+.|.+++++|+|+|+|....
T Consensus 10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~---~~~~~~---------~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYE---KHHGGF---------QASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceeccc---ccCCeE---------EEEEEecCCCcccCEEEEEEEEC
Confidence 35778999999998875 4457899998743111 1000 011222 34889999999999999999742
Q ss_pred --CC----CeeEEEEece
Q psy14080 95 --YT----TTSHSQNAPG 106 (113)
Q Consensus 95 --~~----~~s~~~~L~V 106 (113)
.+ ..|..+.|.|
T Consensus 77 ~~~~~~wS~~Sdpl~l~V 94 (94)
T cd05711 77 NHSLYEWSAPSDPLKIVV 94 (94)
T ss_pred CCCCccccCCCCCeEEeC
Confidence 22 3455555543
No 149
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.98 E-value=4.9e-09 Score=64.56 Aligned_cols=86 Identities=14% Similarity=0.029 Sum_probs=55.6
Q ss_pred CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080 5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD 84 (113)
Q Consensus 5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D 84 (113)
|..++..... ..|.+|++|+|.|... .+.....|||.+..... .+ . ........|.|.+|+.+|
T Consensus 1 pkP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~----------~~---~-~~~~~~~~f~i~~v~~~~ 64 (91)
T cd05751 1 PKPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAV----------KK---P-PEPQNKAKFFIPSMKREH 64 (91)
T ss_pred CCCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccc----------cc---c-CCCceeEEEEccCCChhH
Confidence 4455555443 3678999999999876 44567788875321110 00 0 112346689999999999
Q ss_pred CEEEEEeecCC----CCeeEEEEece
Q psy14080 85 NGTYECQAQPY----TTTSHSQNAPG 106 (113)
Q Consensus 85 ~G~Y~C~~~~~----~~~s~~~~L~V 106 (113)
+|.|+|..... ...|..+.|.|
T Consensus 65 ~G~Y~C~~~~~~~~~S~~Sd~lel~V 90 (91)
T cd05751 65 AGRYRCYYRSGVALWSEPSDPLELVV 90 (91)
T ss_pred CEEEEEEEECCCCccCCCCCcEEEEe
Confidence 99999999543 23455566665
No 150
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.93 E-value=4.9e-09 Score=78.30 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=53.7
Q ss_pred EEecCCcEEEEEEE-----ccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080 17 TGFLAVFSYSDKTV-----RDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ 91 (113)
Q Consensus 17 tv~~G~~a~L~C~v-----~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 91 (113)
-+.+|+++.|+|.+ .+.+.+.|.|||.+. ..+|..... +...|.|.+++.+|+|.|+|.
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~------------~~~~~~~~~----~g~~l~i~~~~~~DsG~Y~C~ 100 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKRGA------------DNDRIIPID----NGSNMLILNPTQSDSGIYICI 100 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEECCC------------ccceEEEcc----CCceEEEcccCcccCeEEEEE
Confidence 46689999999997 566778999999531 111222211 223588999999999999999
Q ss_pred ec-CCCCeeEEEEeceec
Q psy14080 92 AQ-PYTTTSHSQNAPGLG 108 (113)
Q Consensus 92 ~~-~~~~~s~~~~L~V~g 108 (113)
+. ..+..+..++|.|..
T Consensus 101 a~N~~g~~~~s~~L~V~~ 118 (326)
T PHA02785 101 TKNETYCDMMSLNLTIVS 118 (326)
T ss_pred EECCCcceEEEEEEEEEe
Confidence 95 445566677777754
No 151
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.80 E-value=1.4e-08 Score=58.84 Aligned_cols=58 Identities=22% Similarity=0.244 Sum_probs=39.6
Q ss_pred CcEEEEEEEccCC-CCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080 22 VFSYSDKTVRDIV-KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93 (113)
Q Consensus 22 ~~a~L~C~v~~~~-~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 93 (113)
..+.|.|.+.+.+ ...+.|++.. .... ...+... ....+|.|+++..+|.|.|.|.+.
T Consensus 16 ~~~~l~C~~~~~~~~~~~~W~~~~-~~~~--------~~~~~~~-----~~~~~L~i~~v~~~~~g~y~C~a~ 74 (75)
T PF13927_consen 16 GSVTLTCSAEGGPPPPSISWYDSN-PSFN--------SNSRGSS-----SSNSTLTISNVTRSDNGTYTCIAS 74 (75)
T ss_dssp EEEEEEEEESSEESSEEEEEETEE-EEEE--------EEEEEEE-----EEEEEEEESSCCGGGTEEEEEEEE
T ss_pred eeEEEEEEEccccCCeEEEEEecC-Ccee--------eeeeecc-----ceeeEEEEccCCHHhCcEEEEEEE
Confidence 3399999999876 7899998111 1110 0111111 136699999999999999999984
No 152
>KOG4221|consensus
Probab=98.80 E-value=2.4e-08 Score=83.77 Aligned_cols=84 Identities=23% Similarity=0.236 Sum_probs=66.9
Q ss_pred ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080 14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93 (113)
Q Consensus 14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 93 (113)
.+.++..|++|.|+|.+...+-+.+.|.|.+ +.+ ..++|+.+.. +..|.|.++++.|.|.|.|.+.
T Consensus 148 ~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~--~pl-------~~~~r~i~lp-----sG~L~I~~~qp~d~g~yrc~vt 213 (1381)
T KOG4221|consen 148 ESTTLLYGQTALFSCEVNAEPVPTIMWLKND--QPL-------PLDSRVIVLP-----SGALEISGLQPSDTGEYRCVVT 213 (1381)
T ss_pred cceeEecCCcEEEEEEEcCccCceeEEeccc--ccc-------cCCCcEEEcC-----CCcEEecccccCCCceEEEEEe
Confidence 4578899999999999998888899997633 222 2366888773 6699999999999999999995
Q ss_pred CC--CCeeEEEEeceecccc
Q psy14080 94 PY--TTTSHSQNAPGLGDLL 111 (113)
Q Consensus 94 ~~--~~~s~~~~L~V~g~~~ 111 (113)
.. ...++.+.|.|+++..
T Consensus 214 ~g~~~r~S~~a~ltv~s~~~ 233 (1381)
T KOG4221|consen 214 GGASQRTSNEAELTVLSDPG 233 (1381)
T ss_pred cCCcCCccceeEEEecCCcc
Confidence 33 4558899999997654
No 153
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.76 E-value=1.5e-07 Score=56.45 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=47.1
Q ss_pred cEEEEEEEcc-CCCCEEEEEecCCCeEEEecce--EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC---CC
Q psy14080 23 FSYSDKTVRD-IVKVRVSWVRRRDWHILTSGVL--TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP---YT 96 (113)
Q Consensus 23 ~a~L~C~v~~-~~~~~V~W~k~~~~~~l~~~~~--~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~---~~ 96 (113)
++.|.|.+.+ .|.+.|.|+|. +..+..+.. ....++.+.. ....|.|...+.+|.|.|.|.+.. ..
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~--g~~l~~~~~~~~~~~~~~~~~------~~s~L~i~~~~~~~~~~y~C~a~n~~l~~ 72 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRD--GEVLDGATYSKELLKDGKRET------TVSTLPITPSDHDTGRTFTCRARNEALPT 72 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEEC--CEEccCceeeeeEecCCCeEE------EEEEEEEeCceecCCCEEEEEEcCccCCC
Confidence 3689999987 47779999983 333322111 0011111111 123788988888999999999943 23
Q ss_pred CeeEEEEece
Q psy14080 97 TTSHSQNAPG 106 (113)
Q Consensus 97 ~~s~~~~L~V 106 (113)
..+..+.|.|
T Consensus 73 ~~~~s~~l~v 82 (82)
T cd05759 73 GKETSVTLDV 82 (82)
T ss_pred CcEEEEEEcC
Confidence 4566677654
No 154
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.66 E-value=3.4e-07 Score=56.29 Aligned_cols=78 Identities=14% Similarity=0.108 Sum_probs=56.2
Q ss_pred eEEEecCCcEEEEEEEccCCC--CEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080 15 ISTGFLAVFSYSDKTVRDIVK--VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92 (113)
Q Consensus 15 ~~tv~~G~~a~L~C~v~~~~~--~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 92 (113)
+-.+..|++++|.|.....+. +.|.|.... +.+... ...+..+|.+.++...|+|+.+|.+
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~--------------n~~~~~---~~~~~ktL~~~qv~~qdSG~WtC~V 70 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPG--------------NKSKQI---LNQDKKTLNLVQLGPNDSGTWDCIV 70 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCC--------------Ccccee---ccCCccEEEeceeCcccCCEEEEEE
Confidence 346788999999999965444 489996543 222221 1235679999999999999999999
Q ss_pred cCCC-CeeEEEEeceecc
Q psy14080 93 QPYT-TTSHSQNAPGLGD 109 (113)
Q Consensus 93 ~~~~-~~s~~~~L~V~g~ 109 (113)
..+. ......++.|+|+
T Consensus 71 ~~~~k~~~~~~~V~Vl~f 88 (88)
T cd07694 71 SVNSSEKTLKLDIKVLAF 88 (88)
T ss_pred EECceEEEEEeeEEEEeC
Confidence 6544 4457777778774
No 155
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.64 E-value=4.8e-07 Score=54.86 Aligned_cols=74 Identities=14% Similarity=0.122 Sum_probs=47.4
Q ss_pred EEEEEEEccC-CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCC----CCe
Q psy14080 24 SYSDKTVRDI-VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY----TTT 98 (113)
Q Consensus 24 a~L~C~v~~~-~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~----~~~ 98 (113)
+.|.|...+. |.+.+.|||.+ ..|......-..+.+|.. ..+|+|.-...+|.+.|+|.+... ...
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~--~~l~~~~~~~~~~~~~t~-------~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~ 72 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDR--KELKGVISQQENGKTVSV-------SNTIRFPVDRKDDGAILSCEASHPALVSQKK 72 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECC--EECCCCcccccCCceEEE-------EEEEEEEeeeccCCcEEEEEEEChhhCCCCe
Confidence 7899998755 67899999843 333211111112344443 348999999999999999999532 234
Q ss_pred eEEEEece
Q psy14080 99 SHSQNAPG 106 (113)
Q Consensus 99 s~~~~L~V 106 (113)
.....|.|
T Consensus 73 ~~~~~l~V 80 (80)
T cd05885 73 QTQYSLDV 80 (80)
T ss_pred eEEEEEeC
Confidence 45555544
No 156
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.62 E-value=9e-08 Score=53.09 Aligned_cols=65 Identities=20% Similarity=0.223 Sum_probs=42.5
Q ss_pred EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCC
Q psy14080 24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY 95 (113)
Q Consensus 24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 95 (113)
+.|.|.+.+.+...+.|+++........ .. +...........+.|.|.+++.+|+|.|.|.+...
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 65 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSV--LT-----RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNS 65 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcc--cE-----EeccccCcceeEEEEEECccCcccCcEEEEEEecC
Confidence 4699999987778999999752111000 00 00000112235779999999999999999999654
No 157
>KOG4222|consensus
Probab=98.47 E-value=3.4e-07 Score=76.68 Aligned_cols=75 Identities=19% Similarity=0.116 Sum_probs=59.2
Q ss_pred ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080 14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93 (113)
Q Consensus 14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 93 (113)
.+-.+..|.+++|+|...+.+.+.|+|.|.. .+.|.+....+..+.|..+.. ..+|+|.+++.+|.|.|-|+..
T Consensus 323 ~dq~v~lg~~vt~pc~~~gnP~PavfW~keg-~q~llf~~~p~~~~~r~svs~-----~g~L~it~v~~~d~g~Yvcq~~ 396 (1281)
T KOG4222|consen 323 RDQKVALGGTVTFPCETLGNPPPAVFWLKEG-SQDLLFSASPPSSNGRGSVSP-----TGTLTITNVRQSDEGYYVCQTQ 396 (1281)
T ss_pred CccccccCceEEeeeecCCCCCcceEEeccC-cceecccCCCCCcCccceecC-----CCCcccccccccccceEeeccc
Confidence 3456788999999999999999999998754 444444334455688988873 4499999999999999999974
Q ss_pred C
Q psy14080 94 P 94 (113)
Q Consensus 94 ~ 94 (113)
+
T Consensus 397 ~ 397 (1281)
T KOG4222|consen 397 T 397 (1281)
T ss_pred c
Confidence 4
No 158
>KOG4222|consensus
Probab=98.34 E-value=5.1e-07 Score=75.68 Aligned_cols=85 Identities=19% Similarity=0.224 Sum_probs=69.5
Q ss_pred ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-
Q psy14080 14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA- 92 (113)
Q Consensus 14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~- 92 (113)
.+..+.+|+.+.+.|++.+.+.+.|.|-| +++.+ .-.||.+.. .+.+|+|.++++.|+|.|.|-.
T Consensus 233 ~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk-~~~~~---------P~~ry~i~~----d~qtl~i~r~tp~deg~y~C~a~ 298 (1281)
T KOG4222|consen 233 KDLAVLVGAAAEFDCRVGGDPQPTVRWKK-DDPSL---------PRSRYSILD----DTQTLRIDRVTPTDEGTYVCPAE 298 (1281)
T ss_pred ccceeecccccccccccCCCCCCceeeec-cCCCC---------Cccceeeee----ccccccccccCCCcccceeeecc
Confidence 45678899999999999999999999976 33222 256898875 3579999999999999999999
Q ss_pred cCCCCeeEEEEeceeccccc
Q psy14080 93 QPYTTTSHSQNAPGLGDLLM 112 (113)
Q Consensus 93 ~~~~~~s~~~~L~V~g~~~~ 112 (113)
+..+..+..+.|.|.+..-|
T Consensus 299 n~vG~l~asa~ltV~apP~f 318 (1281)
T KOG4222|consen 299 NLVGGLEASATLTVQAPPSF 318 (1281)
T ss_pred ccccccccccceEEecCccc
Confidence 45688888899999886543
No 159
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.27 E-value=3.4e-06 Score=51.55 Aligned_cols=67 Identities=21% Similarity=0.251 Sum_probs=44.4
Q ss_pred cCCcEEEEEEEccC-C-CCEEEEEecCCCeEEEecc----eEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080 20 LAVFSYSDKTVRDI-V-KVRVSWVRRRDWHILTSGV----LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93 (113)
Q Consensus 20 ~G~~a~L~C~v~~~-~-~~~V~W~k~~~~~~l~~~~----~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 93 (113)
.|++++|.|.+.+. + ...|.|+|. +..+..+. .....++.|.+. ..|.|...+..|.|.|.|.+.
T Consensus 12 ~~~~~~L~C~a~g~~P~~~~i~W~~~--g~~~~~~~~~~~~~~~~~gt~~~~-------s~l~v~~~~~~~~~~y~C~v~ 82 (95)
T cd00098 12 LGGSVTLTCLATGFYPPDITVTWLKN--GKELTSGVTTTPPVPNSDGTYSVS-------SQLTVSPSDWNSGDTYTCVVT 82 (95)
T ss_pred cCCCeEEEEEEeeEECCCcEEEEEEC--CEECCCceeccccccCCCCCEEEE-------EEEEECHHHhCCCCCEEEEEE
Confidence 58899999999987 4 458999984 32222111 111234444442 267777777789999999996
Q ss_pred CC
Q psy14080 94 PY 95 (113)
Q Consensus 94 ~~ 95 (113)
..
T Consensus 83 h~ 84 (95)
T cd00098 83 HE 84 (95)
T ss_pred eC
Confidence 43
No 160
>KOG4194|consensus
Probab=98.21 E-value=4.6e-06 Score=66.82 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=52.2
Q ss_pred EEEecCCcEEEEEEEccCCC-CEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-
Q psy14080 16 STGFLAVFSYSDKTVRDIVK-VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ- 93 (113)
Q Consensus 16 ~tv~~G~~a~L~C~v~~~~~-~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~- 93 (113)
..|..|+++.|.|...+.+. +.+.|+|++.+..++ +|-.. ..++--|.+.+...+|+|.|+|.++
T Consensus 716 ~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t---------~rh~f----~d~dQllvv~~~~~~daG~yTcem~~ 782 (873)
T KOG4194|consen 716 QLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILIT---------ERHTF----PDGDQLLVVKENLVEDAGIYTCEMSN 782 (873)
T ss_pred eEEEecceEEEEEecCCCCCCccccccCCCCceEEe---------ecccC----CCCCeEEEEEehhhhhcceEEEEEEe
Confidence 46788999999999998765 899999987554442 22222 2356688999999999999999995
Q ss_pred CCCC
Q psy14080 94 PYTT 97 (113)
Q Consensus 94 ~~~~ 97 (113)
+.+.
T Consensus 783 ~~~~ 786 (873)
T KOG4194|consen 783 TLGT 786 (873)
T ss_pred eccc
Confidence 4443
No 161
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.19 E-value=4.8e-05 Score=46.29 Aligned_cols=75 Identities=15% Similarity=0.095 Sum_probs=48.5
Q ss_pred EEEEEEEccC-CCCEEEEEecCCCeEEEecce-EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC--CCCee
Q psy14080 24 SYSDKTVRDI-VKVRVSWVRRRDWHILTSGVL-TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP--YTTTS 99 (113)
Q Consensus 24 a~L~C~v~~~-~~~~V~W~k~~~~~~l~~~~~-~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~--~~~~s 99 (113)
+.|.|..+++ |...|.|||.+ ..+..... .....++|... .+|.+.--...|...|.|.+.. ....+
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~--~~l~~~~~~~~~~~~~~t~~-------S~L~~~p~~eDdG~~~~C~a~~~~l~~~~ 72 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGN--KELTGKSTVEETWSRMFTVT-------SQLMLKVTKEDDGVPVICLVDHPAVKDLQ 72 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECC--EECcCcccceeccCCCcEEE-------EEEEEECchhhCCCEEEEEEcCcccCCce
Confidence 6799999876 66799999843 33321111 11123345443 3888888888899999999943 23356
Q ss_pred EEEEecee
Q psy14080 100 HSQNAPGL 107 (113)
Q Consensus 100 ~~~~L~V~ 107 (113)
....|.|.
T Consensus 73 ~~~~L~V~ 80 (82)
T cd05883 73 TQRYLEVQ 80 (82)
T ss_pred eeEEEEEE
Confidence 67777764
No 162
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.18 E-value=6e-05 Score=49.46 Aligned_cols=83 Identities=13% Similarity=0.153 Sum_probs=49.8
Q ss_pred CCceeeEeecceEEEecCCcEEEEEEEccC-CC-CEEEEEecCCC-eE---EEec----ceEEcCCCCEEEEEeCCCCcE
Q psy14080 4 APGGILTAFGQISTGFLAVFSYSDKTVRDI-VK-VRVSWVRRRDW-HI---LTSG----VLTYTNDARFQVIHTDGSDDW 73 (113)
Q Consensus 4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~-~~-~~V~W~k~~~~-~~---l~~~----~~~~~~~~R~~~~~~~~~~~~ 73 (113)
+|+.+.... ......+|+.+.|.|.+.+. +. ..|.|+|.... .. ...+ ......|+.|.+. .
T Consensus 37 ~~P~v~~~~-~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~-------s 108 (139)
T cd05771 37 EPPRVRLSL-EKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLS-------S 108 (139)
T ss_pred cCCceEEeC-CCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEE-------E
Confidence 445443332 23344479999999999986 43 47999996522 11 1111 1112345556553 2
Q ss_pred EEEEccCCCCCCEEEEEeecC
Q psy14080 74 NLQIKFLQKRDNGTYECQAQP 94 (113)
Q Consensus 74 ~L~I~~v~~~D~G~Y~C~~~~ 94 (113)
+|.|..-...+.+.|.|.+..
T Consensus 109 ~L~v~~~~~~~g~~ytC~V~H 129 (139)
T cd05771 109 HLTLEPGTEDAGATYTCRVSH 129 (139)
T ss_pred EEEecCCccCCCCEEEEEEEc
Confidence 778776666677899999954
No 163
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.14 E-value=5.6e-05 Score=45.75 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=45.4
Q ss_pred EEEEEEEccC-CCCEEEEEecCCCeEEEecceE--EcCC-CCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC----C
Q psy14080 24 SYSDKTVRDI-VKVRVSWVRRRDWHILTSGVLT--YTND-ARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP----Y 95 (113)
Q Consensus 24 a~L~C~v~~~-~~~~V~W~k~~~~~~l~~~~~~--~~~~-~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~----~ 95 (113)
+.|.|.+.+. |...|.|+|.+ ..+..+... ...+ ..|++. .+|.|.-....|.+.|.|++.. .
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g--~~l~~~~~~~~~~~~~~t~~~~-------s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGD--QELEGAPTSVLEDGNGKTFTVS-------SSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECC--EECCCcceeEEECCCCCEEEEE-------EEEEEEecchhCCCEEEEEEECcccCC
Confidence 6899999886 67799999843 332211100 0112 233332 3677766677788999999953 2
Q ss_pred CCeeEEEEece
Q psy14080 96 TTTSHSQNAPG 106 (113)
Q Consensus 96 ~~~s~~~~L~V 106 (113)
+..+....|.|
T Consensus 73 ~~~~~~~~~~~ 83 (83)
T cd07705 73 SDRSTSQRIEV 83 (83)
T ss_pred CCceeEEEeeC
Confidence 45566666654
No 164
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.12 E-value=3.6e-06 Score=55.32 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=29.9
Q ss_pred EEEEccCCCCCCEEEEEeecCC-CCeeEEEEeceecc
Q psy14080 74 NLQIKFLQKRDNGTYECQAQPY-TTTSHSQNAPGLGD 109 (113)
Q Consensus 74 ~L~I~~v~~~D~G~Y~C~~~~~-~~~s~~~~L~V~g~ 109 (113)
+|+|++++.+|+|+|+|.+... +..+..+.|.|...
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~ 38 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEP 38 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecC
Confidence 7999999999999999999543 56677788888653
No 165
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.02 E-value=7.2e-05 Score=44.99 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=37.7
Q ss_pred EEEEEEEccC-CCCEEEEEecCCCeEEEecc-eE-EcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080 24 SYSDKTVRDI-VKVRVSWVRRRDWHILTSGV-LT-YTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93 (113)
Q Consensus 24 a~L~C~v~~~-~~~~V~W~k~~~~~~l~~~~-~~-~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 93 (113)
+.|.|.+.+. |.+.|.|||.. ..+.... .. ...+..|.+. ..|.+.-....|.+.|.|.+.
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~--~~l~~~~~~~~~~~~~~~~~~-------s~l~~~~~~~d~g~~~~C~v~ 65 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGD--KELKGVKLKEEDENGKTFTVT-------SSLRFQVDREDDGAPIICRVD 65 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECC--EEccCceeeEecCCCCEEEEE-------EEEEEEcchhhCCCEEEEEEe
Confidence 6899999876 66799999853 2222110 00 1122344432 256766666677789999995
No 166
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.91 E-value=0.0001 Score=46.41 Aligned_cols=70 Identities=10% Similarity=0.087 Sum_probs=43.2
Q ss_pred EEEecCCcEEEEEEEccC-CCCE--EEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080 16 STGFLAVFSYSDKTVRDI-VKVR--VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92 (113)
Q Consensus 16 ~tv~~G~~a~L~C~v~~~-~~~~--V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 92 (113)
..+.+|+..+|.|.+.+. |... |.|||.+ ..+............ .....+|.+.--...|.+.|.|.+
T Consensus 11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~--~~l~~~~~~~~~~~~-------~~~~stlt~~~~r~D~g~~~sC~A 81 (100)
T cd05755 11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGN--ETLSRQPFGDNTKSP-------VNAPATITITVDREDHGANFSCET 81 (100)
T ss_pred CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCC--EEcccceeccccCCC-------ceeEEEEEEecchhhCCcEEEEEE
Confidence 356899999999999975 4444 7999843 333211000000111 113457787766677777999999
Q ss_pred cC
Q psy14080 93 QP 94 (113)
Q Consensus 93 ~~ 94 (113)
..
T Consensus 82 ~l 83 (100)
T cd05755 82 EL 83 (100)
T ss_pred Ee
Confidence 53
No 167
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.83 E-value=0.00045 Score=42.44 Aligned_cols=62 Identities=16% Similarity=0.331 Sum_probs=35.5
Q ss_pred CCcEEEEEEEccC-CC-CEEEEEecCCCeEEEecc----eEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080 21 AVFSYSDKTVRDI-VK-VRVSWVRRRDWHILTSGV----LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP 94 (113)
Q Consensus 21 G~~a~L~C~v~~~-~~-~~V~W~k~~~~~~l~~~~----~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 94 (113)
|+.++|.|.+.+. +. -.|.|+|... .+..+. .....|.-|... ..|.| ..+|.+.|.|.+..
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~--~~~~~~~~~~~~~~~d~ty~~~-------s~l~v---~~~~~~~ytC~V~H 81 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGE--DSVDDVESGEILPNGDGTYQLW-------VTLEV---PPEDKARYSCRVEH 81 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCE--ECcccccccceEECCCCeEEEE-------EEEEE---CCCCCCEEEEEEEe
Confidence 7889999999986 33 3889998541 111110 001112222221 13443 34589999999953
No 168
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.78 E-value=0.00047 Score=40.68 Aligned_cols=63 Identities=22% Similarity=0.295 Sum_probs=40.7
Q ss_pred cEEEEEEEccC--CCCEEEEEecCCCeEEEecce----EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080 23 FSYSDKTVRDI--VKVRVSWVRRRDWHILTSGVL----TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP 94 (113)
Q Consensus 23 ~a~L~C~v~~~--~~~~V~W~k~~~~~~l~~~~~----~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 94 (113)
+++|.|.+.+. +...|.|+|.. ..+..+.. ....+..|.+. ..|.|......+...|.|.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g--~~~~~~~~~~~~~~~~~gt~~~~-------s~L~v~~~~~~~~~~~tC~V~H 69 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNG--QEVTSGVSTTDPLKNSDGTYFLS-------SYLTVSASTWESGDTYTCQVTH 69 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECC--EECCCCEEECceEECCCCCEEEE-------EEEEEccccCCCCCEEEEEEEE
Confidence 47899999987 33589999842 22222111 11235555543 2677777778889999999953
No 169
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=97.74 E-value=0.0003 Score=44.68 Aligned_cols=89 Identities=18% Similarity=0.111 Sum_probs=51.2
Q ss_pred eEEEecCCcEEEEEEEccCCCCEEEEEecCCC-----eEEEecc--eEEc---CCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080 15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW-----HILTSGV--LTYT---NDARFQVIHTDGSDDWNLQIKFLQKRD 84 (113)
Q Consensus 15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~-----~~l~~~~--~~~~---~~~R~~~~~~~~~~~~~L~I~~v~~~D 84 (113)
.+...-|+++.|.=.-.......|.|.++... .+|+-.+ .... .+.||... ..++.|.|+.+|++|
T Consensus 7 ~VvgiSG~pl~LrP~~~Qtk~~sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~----~enlaLlIkaAq~qD 82 (108)
T PF11465_consen 7 HVVGISGKPLQLRPSNIQTKVYSVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFT----SENLALLIKAAQPQD 82 (108)
T ss_dssp EEEEETTS-EEE--SS---SSEEEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEE----TTTTEEEESS-SGGG
T ss_pred ceEEccCCEEEECCCCccceeEEEEEEEEcccCCceEEEEEEcCCCcccccccccceEeee----ccCceEEEeecCccc
Confidence 35566788888872212223468999887531 2443221 1111 24688776 368999999999999
Q ss_pred CEEEEEeec-CCCCe-eEEEEecee
Q psy14080 85 NGTYECQAQ-PYTTT-SHSQNAPGL 107 (113)
Q Consensus 85 ~G~Y~C~~~-~~~~~-s~~~~L~V~ 107 (113)
+|.|.=.+. ..+.. ...+++.|.
T Consensus 83 SG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 83 SGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp -EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred CceEEEEEEcCCCcEEEEEEEEEee
Confidence 999999994 44443 455555553
No 170
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.70 E-value=2.4e-05 Score=51.43 Aligned_cols=87 Identities=10% Similarity=0.043 Sum_probs=48.6
Q ss_pred EEecCCcEEEEEEEccC-----CCCEEEEEecCCCeEEEecce--EE--cCCCCEEEEEeCCCCcEEEEEccCCCCCCEE
Q psy14080 17 TGFLAVFSYSDKTVRDI-----VKVRVSWVRRRDWHILTSGVL--TY--TNDARFQVIHTDGSDDWNLQIKFLQKRDNGT 87 (113)
Q Consensus 17 tv~~G~~a~L~C~v~~~-----~~~~V~W~k~~~~~~l~~~~~--~~--~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~ 87 (113)
...=++++.|||.+.+. +...|.|..++ ..++.++.. .. ..-++..+ ..-.+++.+|.+...+.- .|.
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~-~~If~~dg~~~~~~~~~f~sa~i-~~l~kG~aSL~~~~~~a~-~Gn 99 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKN-KDIFIFDGTNNKSTSDNFPSAKI-SELLKGNASLKMDKSDAV-EGN 99 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEETT-EEEEEEETTTTEEEEGGGTT-BE-GGGGGTB--EEEEHHHHH--EE
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEECC-eEEEEEcCccceecccCccccch-hHhhCCCEEEEEcchhcc-ccc
Confidence 34558999999999762 34679998754 334443211 11 11234444 223457889999997766 999
Q ss_pred EEEeec-CCCCeeEEEEece
Q psy14080 88 YECQAQ-PYTTTSHSQNAPG 106 (113)
Q Consensus 88 Y~C~~~-~~~~~s~~~~L~V 106 (113)
|+|.+. .....+..+.|..
T Consensus 100 YTCeVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 100 YTCEVTELSREGETTIELKY 119 (130)
T ss_dssp EEEEEEETTEEEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEEEE
Confidence 999995 4345566667765
No 171
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.69 E-value=0.0008 Score=43.02 Aligned_cols=69 Identities=14% Similarity=0.238 Sum_probs=39.9
Q ss_pred EEEecCCcEEEEEEEccCC--CCEEEEEecCCCeEEEecceEE--cCC-CCEEEEEeCCCCcEEEEEccCCCCCC-EEEE
Q psy14080 16 STGFLAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGVLTY--TND-ARFQVIHTDGSDDWNLQIKFLQKRDN-GTYE 89 (113)
Q Consensus 16 ~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~~~~--~~~-~R~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~ 89 (113)
.....|+.++|.|.+.+.. .-.|.|+|. +..+..+.... ..+ ..|.+. .+|.+.- ...|. ..|.
T Consensus 16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kn--g~~~~~~~~~~~p~~d~~ty~~~-------S~L~~~~-~~~d~~~~yt 85 (111)
T cd05772 16 GRANPGQSVNFTCSAHGFSPRDITVKWLKN--GNELSAEQPNITPEGDSVSYNVT-------STVQVKL-TEDDVHSQVT 85 (111)
T ss_pred hccCCCCCEEEEEEEeeEeCCCCEEEEEEC--CEECcccccceeeCCCCCcEEEE-------EEEEEEC-ccccccCceE
Confidence 3455789999999999863 358999983 33332211111 122 244442 2566554 34444 4699
Q ss_pred EeecC
Q psy14080 90 CQAQP 94 (113)
Q Consensus 90 C~~~~ 94 (113)
|.+..
T Consensus 86 C~V~H 90 (111)
T cd05772 86 CEVQH 90 (111)
T ss_pred EEEEe
Confidence 99954
No 172
>PHA02982 hypothetical protein; Provisional
Probab=97.64 E-value=0.0002 Score=50.73 Aligned_cols=78 Identities=12% Similarity=0.159 Sum_probs=51.6
Q ss_pred eEEEecCCcEEEEEEEccCCC-CEEEEEecCCCeEEEe---cceEE------cCC--CCEEEEEeCCCCcEEEEEccCCC
Q psy14080 15 ISTGFLAVFSYSDKTVRDIVK-VRVSWVRRRDWHILTS---GVLTY------TND--ARFQVIHTDGSDDWNLQIKFLQK 82 (113)
Q Consensus 15 ~~tv~~G~~a~L~C~v~~~~~-~~V~W~k~~~~~~l~~---~~~~~------~~~--~R~~~~~~~~~~~~~L~I~~v~~ 82 (113)
++.+.+|+++.|.|.+.+..+ ..+.|++ ++...|.. +.... ..+ ..+.+. -+.+..+|+|+++.+
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~-~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~s--v~g~~STLTIkk~~i 109 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKG-DAGFMLAQEANGGTGINAFNYVPGPYKDKYALS--VSGNSSTFTMKKPDP 109 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeC-CCCeEEEeeecCcceeccccccCCccceeEEEE--EeccceeEEeccCCc
Confidence 456778999999999876543 4678987 33333321 11111 111 233333 245678999999999
Q ss_pred CCCEEEEEeecCC
Q psy14080 83 RDNGTYECQAQPY 95 (113)
Q Consensus 83 ~D~G~Y~C~~~~~ 95 (113)
+..|.|+|++...
T Consensus 110 ~N~GCYtc~~ks~ 122 (251)
T PHA02982 110 QNLGCFTCEAKDA 122 (251)
T ss_pred ccCCceEEEEecC
Confidence 9999999999764
No 173
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.59 E-value=0.0019 Score=40.06 Aligned_cols=64 Identities=9% Similarity=0.187 Sum_probs=40.0
Q ss_pred EecCCcEEEEEEEccCC--CCEEEEEecCCCeEEEecce----EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080 18 GFLAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGVL----TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ 91 (113)
Q Consensus 18 v~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~~----~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 91 (113)
+..|+.++|.|.+.+.- .-.|.|.|. +..+. +.. ....|..|++.. .|.|. +++...|.|.
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~d--g~~~~-~~~~~~~~p~~d~tyq~~s-------~l~~~---~~~~~~ysC~ 78 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKN--GVKIP-KVEQSDLSFSKDWTFYLLK-------STEFT---PTKGDEYACR 78 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEEC--CEECC-CcEECcEEECCCCCEEEEE-------EEEEC---CCCCCeEEEE
Confidence 34578889999999863 457899873 33333 211 123355555431 44443 6788999999
Q ss_pred ecC
Q psy14080 92 AQP 94 (113)
Q Consensus 92 ~~~ 94 (113)
+..
T Consensus 79 V~H 81 (93)
T cd05770 79 VRH 81 (93)
T ss_pred EEE
Confidence 954
No 174
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.59 E-value=0.00053 Score=42.87 Aligned_cols=66 Identities=14% Similarity=0.168 Sum_probs=41.5
Q ss_pred cCCcEEEEEEEccCC--CCEEEEEecCCCeEEEec----ceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080 20 LAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSG----VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93 (113)
Q Consensus 20 ~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~----~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 93 (113)
.++.++|.|.+.+.. .-.|.|+|.+ ..+..+ ......|..|++. ..|.+..-.-.+...|.|.+.
T Consensus 16 ~~~~~~L~C~~~gfyP~~i~v~W~~~g--~~~~~~~~~~~~~~~~dgty~~~-------s~L~v~~~~w~~~~~~sC~V~ 86 (100)
T cd07699 16 KSGKATLVCLINDFYPGFATVQWKVDG--ATVSSGVQTSTTEQQSDNTYSLS-------SYLTLTKSDWNKHKVYTCEVT 86 (100)
T ss_pred cCCCcEEEEEEEeEECCCCEEEEEECC--EECcccEeccccEECCCCCEEEE-------EEEEEcHHHhCCCCeEEEEEE
Confidence 467899999999863 4578999843 222111 1111235566653 266666555556899999995
Q ss_pred C
Q psy14080 94 P 94 (113)
Q Consensus 94 ~ 94 (113)
.
T Consensus 87 H 87 (100)
T cd07699 87 H 87 (100)
T ss_pred e
Confidence 3
No 175
>PHA02633 hypothetical protein; Provisional
Probab=97.58 E-value=0.00015 Score=41.70 Aligned_cols=38 Identities=16% Similarity=0.051 Sum_probs=28.4
Q ss_pred CcEEEEEccCCCCCCEEEEEeecCC-CCeeEEEEeceec
Q psy14080 71 DDWNLQIKFLQKRDNGTYECQAQPY-TTTSHSQNAPGLG 108 (113)
Q Consensus 71 ~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~s~~~~L~V~g 108 (113)
+...|-|-++..+|+|+|.|.+... .-....++|.|..
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 4558999999999999999999643 3344556666653
No 176
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.51 E-value=0.0011 Score=40.15 Aligned_cols=61 Identities=11% Similarity=0.163 Sum_probs=38.8
Q ss_pred EEEEEEEccC-CCCEEEEEecCCCeEEEecce---EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080 24 SYSDKTVRDI-VKVRVSWVRRRDWHILTSGVL---TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93 (113)
Q Consensus 24 a~L~C~v~~~-~~~~V~W~k~~~~~~l~~~~~---~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 93 (113)
+.|.|.+.+. |...|.|+|.. ..+..... ....+..|... .+|.|..-...|...|.|.+.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng--~~l~~~~~~~~~~~~~~t~~~~-------s~L~~~~~~~d~g~~ytC~v~ 66 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKND--KEIKDVKYLKEEDANRKTFTVS-------STLDFRVDRSDDGVAIICRVD 66 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECC--EECcCceeeEeeCCCCCEEEEE-------EEEEEEcccccCCCEEEEEEe
Confidence 6799999875 55789999843 33221111 11223445443 377777666778999999995
No 177
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.37 E-value=0.0018 Score=40.25 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=40.8
Q ss_pred ecCCcEEEEEEEccC-C--CCEEEEEecCCCeEEEecc--eEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080 19 FLAVFSYSDKTVRDI-V--KVRVSWVRRRDWHILTSGV--LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93 (113)
Q Consensus 19 ~~G~~a~L~C~v~~~-~--~~~V~W~k~~~~~~l~~~~--~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 93 (113)
..|++++|.|.+.+. . .-.|.|.|.++ ..+.... .....|.-|.+. ..|.+..-+-.+...|.|.+.
T Consensus 12 ~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~-~~~~~~~~~~~~~~dgty~~~-------s~l~v~~~~w~~g~~ysC~V~ 83 (96)
T cd07696 12 LLTKSVKLTCLVTNLTSPEGVNVTWTRGSG-EPVKASIQPPESHNNATLSVT-------STLNVSTDDWISGDTFQCKVT 83 (96)
T ss_pred ccCCCeEEEEEEeCCCCCCCcEEEEEECCe-EeeeEEecccccCCCCCEEEE-------EEEEeCHHHccCCCcEEEEEE
Confidence 457899999999988 3 34789998532 2221111 111234455543 256655544445679999995
Q ss_pred C
Q psy14080 94 P 94 (113)
Q Consensus 94 ~ 94 (113)
.
T Consensus 84 H 84 (96)
T cd07696 84 H 84 (96)
T ss_pred C
Confidence 4
No 178
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.36 E-value=0.0027 Score=39.29 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=38.8
Q ss_pred ecCCcEEEEEEEccCC--CCEEEEEecCCCeEEEec----ceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080 19 FLAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSG----VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92 (113)
Q Consensus 19 ~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~----~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 92 (113)
.+|+.++|.|.+.+.- .-.|.|+|.. ..+..+ ......|..|.+.. .|.+. .++...|.|.+
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g--~~~~~~~~~~~~~~~~dgTy~~~s-------~L~~~---~~~~~~ysC~V 79 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNG--QEETEGVVSTELIPNGDWTYQILV-------MLETT---PSRGDTYTCVV 79 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECC--eecCCCceecceEECCCCcEEEEE-------EEEEc---CCCCCEEEEEE
Confidence 4689999999999863 3378999853 222211 11112344555431 44443 45777999999
Q ss_pred cC
Q psy14080 93 QP 94 (113)
Q Consensus 93 ~~ 94 (113)
..
T Consensus 80 ~H 81 (94)
T cd05766 80 EH 81 (94)
T ss_pred Ee
Confidence 64
No 179
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.28 E-value=0.0077 Score=37.32 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=39.3
Q ss_pred ecCCcEEEEEEEccC-C-CCEEEEEecCCCeEEEec----ceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080 19 FLAVFSYSDKTVRDI-V-KVRVSWVRRRDWHILTSG----VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92 (113)
Q Consensus 19 ~~G~~a~L~C~v~~~-~-~~~V~W~k~~~~~~l~~~----~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 92 (113)
..|+.++|.|.+.+. | +-.|.|.|. +..+..+ ......|..|... ..|.|. +++...|.|.+
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~--g~~~~~~~~~~~~~~~~Dgty~~~-------s~L~v~---~~~~~~ytC~V 80 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKN--GVPVTDGVSETRYYPRQDLSFQKF-------SYLNFT---PEEGDIYSCIV 80 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEEC--CeEccCceEEeeeEeCCCCcEEEE-------EEEEEE---CCCCCeEEEEE
Confidence 346778999999986 3 357899874 3332221 1122345666653 145554 45677999999
Q ss_pred cC
Q psy14080 93 QP 94 (113)
Q Consensus 93 ~~ 94 (113)
..
T Consensus 81 ~H 82 (94)
T cd05767 81 EH 82 (94)
T ss_pred Ee
Confidence 64
No 180
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.21 E-value=0.0089 Score=35.86 Aligned_cols=67 Identities=10% Similarity=0.075 Sum_probs=41.1
Q ss_pred CCcEEEEEEEc-cCCCCEEEEEecCCCe-EEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080 21 AVFSYSDKTVR-DIVKVRVSWVRRRDWH-ILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP 94 (113)
Q Consensus 21 G~~a~L~C~v~-~~~~~~V~W~k~~~~~-~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 94 (113)
|+.+.|.|... +.|.+.|.|+...... ...........+..|.+. .+|.+..-...+...+.|.+..
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~-------S~l~~~~~~~~~~~~~~C~~~~ 82 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVS-------STLTLTPTREDHGKTLTCRASH 82 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEE-------EEEEEETTGGGTTEEEEEEEEE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEE-------EEEEEEcChHHCCeEEEEEEEC
Confidence 67999999876 4577899999754322 011111122334555543 2666665556788889999964
No 181
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.20 E-value=0.0035 Score=40.35 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=39.4
Q ss_pred cCCcEEEEEEEccCC--CCEEEEEecCCCeEEEecce----EEc-CCCCEEEEEeCCCCcEEEEEccCCCCC-CEEEEEe
Q psy14080 20 LAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGVL----TYT-NDARFQVIHTDGSDDWNLQIKFLQKRD-NGTYECQ 91 (113)
Q Consensus 20 ~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~~----~~~-~~~R~~~~~~~~~~~~~L~I~~v~~~D-~G~Y~C~ 91 (113)
.++.++|.|.+.+.- .-.|.|+|. +..+..+.. ... .+.-|.+. ..|.|...+-.| ...|.|.
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kn--g~~l~~g~~~~~~~~~~~~gTYs~~-------S~L~v~~~~w~~~~~~ytC~ 87 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVN--GKEVTDGVATDPQALRENTSTYSIS-------SRLRVSATEWFNPRNTFTCI 87 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEEC--CEECCCCcccccceecCCCCeEEEE-------EEEEEChHHhccCCCeEEEE
Confidence 467899999999863 247899884 322222211 001 11344432 266766555434 7899999
Q ss_pred ecCC
Q psy14080 92 AQPY 95 (113)
Q Consensus 92 ~~~~ 95 (113)
+...
T Consensus 88 V~H~ 91 (115)
T cd05769 88 VQFY 91 (115)
T ss_pred EEEe
Confidence 9643
No 182
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.13 E-value=0.0063 Score=37.67 Aligned_cols=66 Identities=12% Similarity=0.140 Sum_probs=40.2
Q ss_pred CCcEEEEEEEccCC--CCEEEEEecCCCeEEEecc----eEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080 21 AVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGV----LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP 94 (113)
Q Consensus 21 G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~----~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 94 (113)
+.++.|.|.+.+.- .-.|.|+|. +..+..+. .....++.|.+. ..|.|..-+-.+...|.|.+..
T Consensus 14 ~~~~~L~C~a~gFyP~~I~vtW~~d--g~~~~~~~~~s~~~~~~~~Ty~~~-------S~L~v~~~~w~~~~~ytC~V~H 84 (94)
T cd05847 14 SETIQLLCLISGYTPGTIEVEWLVD--GQVATLVAASTAPQKEEGSTFSTT-------SELNVTQEDWKSGKTYTCKVTH 84 (94)
T ss_pred CCCEEEEEEEEeEECCCCEEEEEEC--CEECcCceeecccEECCCCcEEEE-------EEEEEchHHhcCCCeEEEEEEE
Confidence 46699999999863 357899873 33221111 112234455543 2666665555578999999964
Q ss_pred C
Q psy14080 95 Y 95 (113)
Q Consensus 95 ~ 95 (113)
.
T Consensus 85 ~ 85 (94)
T cd05847 85 Q 85 (94)
T ss_pred C
Confidence 3
No 183
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.05 E-value=0.0059 Score=36.48 Aligned_cols=63 Identities=17% Similarity=0.320 Sum_probs=39.4
Q ss_pred cCCcEEEEEEEccC-C-CCEEEEEecCCCeEEEec----ceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080 20 LAVFSYSDKTVRDI-V-KVRVSWVRRRDWHILTSG----VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93 (113)
Q Consensus 20 ~G~~a~L~C~v~~~-~-~~~V~W~k~~~~~~l~~~----~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 93 (113)
.+++++|.|.+.+. + +-.|.|+|.+ ..+..+ ......|+.|.+.. .|.|. ..+...|.|.+.
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~--~~~~~~~~~~~~~~~~dgty~~~s-------~l~v~---~~~~~~ysC~V~ 74 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNG--KEVTEGVETTPPPPNSDGTYSVTS-------SLTVT---WNSGDEYSCRVT 74 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETT--EEETTTEEEEEEEEETTSEEEEEE-------EEEEE---TTTTGGEEEEEE
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEecc--ceeeeeeeecccccccccceeeeE-------EEEec---CCCCCEEEEEEE
Confidence 37899999999976 3 3379998743 222111 01113466676542 56665 566669999995
Q ss_pred C
Q psy14080 94 P 94 (113)
Q Consensus 94 ~ 94 (113)
.
T Consensus 75 H 75 (83)
T PF07654_consen 75 H 75 (83)
T ss_dssp E
T ss_pred E
Confidence 4
No 184
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.03 E-value=0.02 Score=35.58 Aligned_cols=77 Identities=9% Similarity=0.032 Sum_probs=47.1
Q ss_pred CCcEEEEEEEc-cCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCC---C
Q psy14080 21 AVFSYSDKTVR-DIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY---T 96 (113)
Q Consensus 21 G~~a~L~C~v~-~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~---~ 96 (113)
-....+.|... +.|...|.|++...+..-. ......+++|.+. .+|.+.--...|...|.|++... .
T Consensus 15 ~~~~va~C~s~~gkPaa~IsW~~~~~g~~~~--~~~~~~~gt~tv~-------S~l~~~P~~~d~Gk~ltC~v~h~al~~ 85 (95)
T cd07703 15 IPVPVAKCVSANGRPPARISWSSTLGGNANT--TSKENGDGTVTVT-------SEYSLVPTPEANGKEVTCKVEHETLQE 85 (95)
T ss_pred CccEEEEEEcCCCCCCcEEEEEcCCCCCeeE--EEEeCCCCCEEEE-------EEEEEecCHHHCCCEEEEEEeCcccCC
Confidence 35678999887 4577899999852221111 1112235566654 26777777778888999999642 3
Q ss_pred CeeEEEEece
Q psy14080 97 TTSHSQNAPG 106 (113)
Q Consensus 97 ~~s~~~~L~V 106 (113)
.....+.|.|
T Consensus 86 ~~~~~~~l~v 95 (95)
T cd07703 86 PQLLPVTLSV 95 (95)
T ss_pred CeEEEEEEeC
Confidence 4445555543
No 185
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.01 E-value=0.019 Score=35.96 Aligned_cols=87 Identities=7% Similarity=-0.157 Sum_probs=56.5
Q ss_pred eecceEEEecCCcEEE-EEEEcc-CCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080 11 AFGQISTGFLAVFSYS-DKTVRD-IVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY 88 (113)
Q Consensus 11 ~~~~~~tv~~G~~a~L-~C~v~~-~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y 88 (113)
..|..+.+.+|+.+.+ .|...+ .|...|.|++...+.. .. ......++.|.+. .+|.+..-...|.-.+
T Consensus 6 ~~~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~-~~~~~~ngT~TV~-------S~~~l~p~r~d~G~~v 76 (97)
T cd07704 6 SPGPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ES-HSQEHPNGTTTVT-------SEYIWVPSRHANGHPL 76 (97)
T ss_pred CCCCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ce-eeecCCCCCEEEE-------EEEEEEeCHHHCCcEE
Confidence 3455667788999999 999875 4678999997533321 10 1112235677765 2677777778899999
Q ss_pred EEeecCC---CCeeEEEEece
Q psy14080 89 ECQAQPY---TTTSHSQNAPG 106 (113)
Q Consensus 89 ~C~~~~~---~~~s~~~~L~V 106 (113)
.|.++.. ......+.|.|
T Consensus 77 tC~V~H~al~~~~~~~~~L~V 97 (97)
T cd07704 77 TCVVSHPALQQDFRITHILNV 97 (97)
T ss_pred EEEEeCcccCCCceeeEEeeC
Confidence 9999642 24455556654
No 186
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.97 E-value=0.0013 Score=47.97 Aligned_cols=48 Identities=17% Similarity=0.322 Sum_probs=36.5
Q ss_pred CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080 34 VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP 94 (113)
Q Consensus 34 ~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 94 (113)
.+|...|...+ +..+ ..+.++.+. ..+.|.+.+.+++|||.|+|.++.
T Consensus 11 iDP~y~W~GP~-g~~l-------~gn~~~nIT-----~TG~L~~~~F~esmSG~YTCtLsY 58 (271)
T PF07354_consen 11 IDPTYLWTGPN-GKPL-------SGNSYVNIT-----ETGKLMFKNFQESMSGSYTCTLSY 58 (271)
T ss_pred CCCceEEECCC-Cccc-------CCCCeEEEc-----cCceEEeeccccccCCceEEEEEE
Confidence 46778897643 3443 246677776 467899999999999999999953
No 187
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.83 E-value=0.0034 Score=36.85 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=34.0
Q ss_pred CCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080 21 AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP 94 (113)
Q Consensus 21 G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 94 (113)
..+|.|.|.. +..|.|+| . ..+. -. ++-+|.+-++...=.|+|.|..+.
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G-~~~~--------------~~-----~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-G-KEIL--------------EV-----SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-C-cccc--------------cc-----cccEEeccCcccCCCcceEecCcc
Confidence 3579999965 24699998 2 2111 00 134777788888999999999855
No 188
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.75 E-value=0.0088 Score=34.77 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=30.2
Q ss_pred ecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080 19 FLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93 (113)
Q Consensus 19 ~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 93 (113)
..|.+|+|+|..... .+.|+|.+ ..+. ..+. .+...+-. +++|.|.|...
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~--~~~~------g~~~-------------~~~~~~~~-e~~G~Y~C~~~ 54 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKND--QVSQ------GSDE-------------KYLSLNHF-SSSGYYHCTAD 54 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCC--ccCC------CCCc-------------eEEeeccC-CCCceEEEEeC
Confidence 348999999986632 29998743 1110 0111 22222333 99999999984
No 189
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=96.60 E-value=0.014 Score=45.11 Aligned_cols=82 Identities=17% Similarity=0.055 Sum_probs=55.6
Q ss_pred ceEEEecCCcEEEEEEEccCC---CCEEEEEecC---CCeEEEecc-----eEEcCCCCEEEEEe----CCCCcEEEEEc
Q psy14080 14 QISTGFLAVFSYSDKTVRDIV---KVRVSWVRRR---DWHILTSGV-----LTYTNDARFQVIHT----DGSDDWNLQIK 78 (113)
Q Consensus 14 ~~~tv~~G~~a~L~C~v~~~~---~~~V~W~k~~---~~~~l~~~~-----~~~~~~~R~~~~~~----~~~~~~~L~I~ 78 (113)
.++++..|.++.|.|.++..+ -....|+-.. ++.+-+.-. ..+..++.|.+... .+-.+.+|+|+
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 347788899999999998644 3456898654 122211110 01234667776532 34456799999
Q ss_pred cCCCCCCEEEEEeecCC
Q psy14080 79 FLQKRDNGTYECQAQPY 95 (113)
Q Consensus 79 ~v~~~D~G~Y~C~~~~~ 95 (113)
++..+..|.|.|++...
T Consensus 352 ka~I~N~GCY~~~a~~g 368 (500)
T PHA02914 352 KAHINNAGCYEAQAFMG 368 (500)
T ss_pred eEEEEcCCceEEEEecC
Confidence 99999999999999653
No 190
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.58 E-value=0.041 Score=34.23 Aligned_cols=64 Identities=8% Similarity=0.038 Sum_probs=35.2
Q ss_pred CCcEEEEEEEccCC--CCEEEEEecCCCeEEEecce---EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCC
Q psy14080 21 AVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGVL---TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY 95 (113)
Q Consensus 21 G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~~---~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 95 (113)
+..++|.|.+.+.- .-.|.|.|.+ ..+..+.. ....++.|... ..|.|..-+ +...|.|.+...
T Consensus 16 ~~~~tL~C~a~gFyP~~I~v~W~kng--~~~~~~~~~~~~~~~~dty~~~-------S~L~vt~~~--~~~~ysC~V~H~ 84 (96)
T cd07697 16 QGQGIYLCLLENFFPDVIQVHWREGN--SPSILGSQKSEKDKDNDVYSTT-------SWLTVTKDS--LGKKFRCIYKHE 84 (96)
T ss_pred CCCEEEEEEEEEEeCCCeEEEEEECC--EECcCCeEeccEecCCCEEEEE-------EEEEECchh--CCCeEEEEEEEC
Confidence 56799999999863 3468998743 22222211 11122245443 255554332 234599999643
No 191
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.56 E-value=0.014 Score=36.62 Aligned_cols=66 Identities=11% Similarity=0.170 Sum_probs=37.1
Q ss_pred cCCcEEEEEEEccCC--CCEEEEEecCCCeEEEecc---eEEc----CCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080 20 LAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGV---LTYT----NDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC 90 (113)
Q Consensus 20 ~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~---~~~~----~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 90 (113)
.|+.++|.|.+.+.. .-.|.|+|.. ..+..+. .... .|.-|.+. ..|.|..-.-.+...|.|
T Consensus 15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g--~~~~~~~~~~~~~~~~~~~dgTy~~~-------s~L~v~~~~w~~~~~ytC 85 (102)
T cd05768 15 LQETATLTCLVKGFSPSDIFVKWLQNG--QPLSKQKYVTTAPMQEPGGNESYFLY-------SKLTVSAEDWNAGDVFTC 85 (102)
T ss_pred cCCceEEEEEEeeEeCCCCEEEEEECC--EECCcccccccCcccccCCCCeEEEE-------EEEEEcHHHhcCCCcEEE
Confidence 468899999999863 3467998853 2211100 0000 12334332 256654443456778999
Q ss_pred eecC
Q psy14080 91 QAQP 94 (113)
Q Consensus 91 ~~~~ 94 (113)
.+..
T Consensus 86 ~V~H 89 (102)
T cd05768 86 VVGH 89 (102)
T ss_pred EeEe
Confidence 9954
No 192
>KOG4597|consensus
Probab=96.53 E-value=0.0038 Score=48.98 Aligned_cols=82 Identities=13% Similarity=-0.093 Sum_probs=55.7
Q ss_pred EEecCCcEEEEEEEccCCCCEEEEEecCC--CeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-
Q psy14080 17 TGFLAVFSYSDKTVRDIVKVRVSWVRRRD--WHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ- 93 (113)
Q Consensus 17 tv~~G~~a~L~C~v~~~~~~~V~W~k~~~--~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~- 93 (113)
.+..|+++.++|-+.+.+.+.|.|-|+.. ..+....+. .-+|..+. +...|.|-|...+|+|.|.|.+.
T Consensus 207 ~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq---~~e~p~vt-----stcql~ic~ewq~~a~w~tCs~rc 278 (560)
T KOG4597|consen 207 FVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQ---TVENPVVT-----STCQLVICNEWQADAGWYTCSARC 278 (560)
T ss_pred hcccchhhcccccccCCcCceeeeehhhccccceeecCcc---ccCCccee-----eeeeEEEcchhhcCCCceeecccc
Confidence 35679999999999999999999987652 222211111 11233333 46799999999999999999994
Q ss_pred CCCCeeEEEEece
Q psy14080 94 PYTTTSHSQNAPG 106 (113)
Q Consensus 94 ~~~~~s~~~~L~V 106 (113)
-.+...+.+.+.+
T Consensus 279 g~g~~~rdv~c~s 291 (560)
T KOG4597|consen 279 GAGFLRRDVPCSS 291 (560)
T ss_pred ccceeeccceeee
Confidence 4455454454443
No 193
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.22 E-value=0.044 Score=34.40 Aligned_cols=68 Identities=9% Similarity=0.018 Sum_probs=37.5
Q ss_pred cCCcEEEEEEEccCC---CCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCC
Q psy14080 20 LAVFSYSDKTVRDIV---KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY 95 (113)
Q Consensus 20 ~G~~a~L~C~v~~~~---~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 95 (113)
.+++|+|.|.+.+.. +-.|.|.+........ .......|.-|.+. ..|.|..-+=+-...|.|.+...
T Consensus 18 ~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~-t~~~~~~dgTys~~-------S~L~v~~~~W~~g~~ytC~V~H~ 88 (99)
T cd04986 18 LGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQ-TSAESDQCGCYSVS-------SVLPGCAEEWNKGEPFACTVTHP 88 (99)
T ss_pred cCCccEEEEEEeccCCCCCeEEEEEECCccCcEE-cCcccCCCCCEEEE-------EEEEeCHHHhcCCCeEEEEEECC
Confidence 578999999999864 3478998754221100 00011224555543 25555422212234599999643
No 194
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.03 E-value=0.052 Score=33.61 Aligned_cols=67 Identities=12% Similarity=0.167 Sum_probs=39.0
Q ss_pred cCCcEEEEEEEccCC--CCEEEEEecCCCeEEEecce----EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080 20 LAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGVL----TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93 (113)
Q Consensus 20 ~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~~----~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 93 (113)
.++.++|.|.+.+.. .-.|.|+|.. .. ..+.. ....|+.|... ..|.|..-+-.....|.|.+.
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g--~~-~~~~~~~~~~~~~dgty~~~-------s~L~v~~~~w~~~~~ytC~V~ 84 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGS--NS-TSGVKTYPAVLQSGGLYTAS-------SQLTVPASEWKGKESFYCKVE 84 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECC--EE-CCCcEECCCEeCCCCCEEEE-------EEEEEeHHHcCCCCcEEEEEE
Confidence 356799999999863 3478998843 22 22211 11125566543 255555433223678999996
Q ss_pred CCC
Q psy14080 94 PYT 96 (113)
Q Consensus 94 ~~~ 96 (113)
..+
T Consensus 85 H~~ 87 (95)
T cd04985 85 HPS 87 (95)
T ss_pred eCC
Confidence 543
No 195
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=95.97 E-value=0.18 Score=31.20 Aligned_cols=77 Identities=8% Similarity=0.007 Sum_probs=46.8
Q ss_pred CCcEEEEEEEc-cCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCC---C
Q psy14080 21 AVFSYSDKTVR-DIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY---T 96 (113)
Q Consensus 21 G~~a~L~C~v~-~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~---~ 96 (113)
.....+.|... +.|...|.|++...+..... .....++.|.+. .+|.+.-....|...|+|++... .
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~--~~~~~~g~~tv~-------S~l~~~p~~~d~G~~~tC~v~h~~l~~ 85 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEAETQ--SKENPNGTVTVT-------SEYRLVPSREANGKELTCVVSHPTLQE 85 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcceeE--eecCCCCCEEEE-------EEEEEecCHHHCCCEEEEEEeCcccCC
Confidence 35677899986 55788999998422211110 011224445553 27777777778888999999532 3
Q ss_pred CeeEEEEece
Q psy14080 97 TTSHSQNAPG 106 (113)
Q Consensus 97 ~~s~~~~L~V 106 (113)
.....+.|.|
T Consensus 86 ~~~~~~~L~V 95 (95)
T cd05719 86 PQRFSVTLNV 95 (95)
T ss_pred CeEEEEEeeC
Confidence 4455555554
No 196
>PHA03042 CD47-like protein; Provisional
Probab=95.49 E-value=0.14 Score=37.66 Aligned_cols=57 Identities=14% Similarity=0.254 Sum_probs=35.6
Q ss_pred cCCcEEEEEEEccC-----CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080 20 LAVFSYSDKTVRDI-----VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP 94 (113)
Q Consensus 20 ~G~~a~L~C~v~~~-----~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 94 (113)
=.+++.++|.+.+. .+..|.|...+ ..++..+ .. +..+|+....+ .=.|.|+|.+..
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~-~~If~~n---------------~t-n~aSL~~~f~~-~l~GNYTCEv~~ 91 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNN-KVIFKKN---------------NT-NTSSLKFNFSK-NLSGNYTCEAIN 91 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCC-eeEEEec---------------CC-cceEEEEeccc-cCCCceeEEEee
Confidence 37899999999864 45679996532 2222221 11 23466655444 338999999953
No 197
>KOG1480|consensus
Probab=95.42 E-value=0.006 Score=50.34 Aligned_cols=78 Identities=19% Similarity=0.168 Sum_probs=51.5
Q ss_pred EEecCCcEEEEEEEc-cCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-C
Q psy14080 17 TGFLAVFSYSDKTVR-DIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-P 94 (113)
Q Consensus 17 tv~~G~~a~L~C~v~-~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-~ 94 (113)
-|..+...+|+|+.. +.+...+.|+|+... .. .+.-+... ....|+|..+.+.|+|.|+|++. .
T Consensus 140 ~V~~~s~~~l~cr~pe~~paae~~w~k~e~~--~~-------pd~n~~~~-----~d~~li~~~arlsd~~nytc~a~ni 205 (909)
T KOG1480|consen 140 EVQEETTLQLPCRPPEGDPKAEVEWLKNEVV--ID-------PDANVIRA-----SDHNLIISQARLSDSGNYTCEATNI 205 (909)
T ss_pred eecccccccccccCcccchhhhhhccccCCC--CC-------ccccchhh-----hcCCccccchhhhhcccceeeeehh
Confidence 356788899999986 446678999987521 11 11111111 35589999999999999999994 3
Q ss_pred CC---CeeEEEEeceec
Q psy14080 95 YT---TTSHSQNAPGLG 108 (113)
Q Consensus 95 ~~---~~s~~~~L~V~g 108 (113)
.. .....+++.|-|
T Consensus 206 ~~~r~~~~~~v~vyv~g 222 (909)
T KOG1480|consen 206 VAKRKSDPATVQVYVNG 222 (909)
T ss_pred hccccccceEEEEEEcC
Confidence 32 334556665554
No 198
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=95.05 E-value=0.19 Score=31.60 Aligned_cols=25 Identities=8% Similarity=-0.013 Sum_probs=20.2
Q ss_pred EecCCcEEEEEEEccCC---CCEEEEEe
Q psy14080 18 GFLAVFSYSDKTVRDIV---KVRVSWVR 42 (113)
Q Consensus 18 v~~G~~a~L~C~v~~~~---~~~V~W~k 42 (113)
..+|..+++.|.+.+.. ...|.|+|
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~Llk 39 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLK 39 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEec
Confidence 47899999999998652 34799987
No 199
>PHA03240 envelope glycoprotein M; Provisional
Probab=95.04 E-value=0.043 Score=39.09 Aligned_cols=87 Identities=15% Similarity=0.069 Sum_probs=51.3
Q ss_pred eEEEecCCcEEEEEEEccCCCCEEEEEecC-------C--CeEEEe--c----ce-EE---cCCCCEEEEEeCCCCcEEE
Q psy14080 15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRR-------D--WHILTS--G----VL-TY---TNDARFQVIHTDGSDDWNL 75 (113)
Q Consensus 15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~-------~--~~~l~~--~----~~-~~---~~~~R~~~~~~~~~~~~~L 75 (113)
.+++.+|.+++|.=.--..+...|+||++. + .+.+-. . .. +. ..+.|+...= .+++|
T Consensus 32 evt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C----~NstL 107 (258)
T PHA03240 32 EHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYEC----HNSTL 107 (258)
T ss_pred ecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEe----ccceE
Confidence 467788899988754433355689999965 1 122211 1 00 00 1134444331 36799
Q ss_pred EEccCCCCCCEEEE---Eeec--C-CCCeeEEEEece
Q psy14080 76 QIKFLQKRDNGTYE---CQAQ--P-YTTTSHSQNAPG 106 (113)
Q Consensus 76 ~I~~v~~~D~G~Y~---C~~~--~-~~~~s~~~~L~V 106 (113)
.|.+|..+|.|-|. |... . .|.++ .+.|.|
T Consensus 108 ~i~~vn~sd~~nYcr~k~~~~g~~e~pt~s-C~~l~~ 143 (258)
T PHA03240 108 IIAHLNLSDAGEYCRKKCPPKGDCEFPTMS-CFRLIL 143 (258)
T ss_pred EEEEEeecCcchhhhccCCCCCCcCCCcce-eeeEee
Confidence 99999999999994 3332 1 24445 477776
No 200
>KOG3515|consensus
Probab=94.82 E-value=0.035 Score=45.94 Aligned_cols=63 Identities=16% Similarity=0.070 Sum_probs=42.7
Q ss_pred eEEEecCCcEEEEEEEccC-CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080 15 ISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93 (113)
Q Consensus 15 ~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 93 (113)
...+.+|++|.|+|++.+. +...+.||....+.. .|+... .+-+|...+....--+.|.|...
T Consensus 16 ~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-----------~~~~~~-----~~~~~~~~~~~~~~~~~~~c~a~ 79 (741)
T KOG3515|consen 16 TVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-----------GRYATI-----ADPTLVTTGDVRDTVAELNCRAF 79 (741)
T ss_pred ChhhccCCcceeeeecCCCCCCcceEEEecCcccc-----------cccccc-----cCCceeeecchhhhhhhhhhhhc
Confidence 3467889999999999754 567899998653221 344433 23366666667777777888773
No 201
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=93.22 E-value=1.2 Score=27.32 Aligned_cols=65 Identities=9% Similarity=0.143 Sum_probs=42.8
Q ss_pred EEEecCCcEEEEEEEccC-----CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080 16 STGFLAVFSYSDKTVRDI-----VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC 90 (113)
Q Consensus 16 ~tv~~G~~a~L~C~v~~~-----~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 90 (113)
..+..|.+++..|.+.+. ....|.|.- +... ....||.... ....++++.+.....+..|.|
T Consensus 13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkl--n~~~--------iP~~qy~~in---~~~SsVT~~~~~~~~~~L~cC 79 (89)
T PF06328_consen 13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKL--NGEK--------IPGSQYRVIN---DTVSSVTLPNLNPTGATLFCC 79 (89)
T ss_dssp SEEETTS-EEEEEEE-CCCHCT-STTCEEEEC--SSCE--------STCGCEEEES---TTEEEEEESS--SSEEEEEEE
T ss_pred CEEeCCCCEEEEEEEECCCCCCcccceEEEEE--CCEE--------CChhHcceeC---CeEEEEEEccCCCCCceEEEE
Confidence 367889999999999743 345678843 2222 2466787763 245788999999999999999
Q ss_pred eec
Q psy14080 91 QAQ 93 (113)
Q Consensus 91 ~~~ 93 (113)
...
T Consensus 80 ~l~ 82 (89)
T PF06328_consen 80 KLA 82 (89)
T ss_dssp EEC
T ss_pred EEc
Confidence 864
No 202
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=93.01 E-value=0.38 Score=31.88 Aligned_cols=61 Identities=3% Similarity=-0.069 Sum_probs=35.4
Q ss_pred EEecCCcEEEEEEEccCC-----CCEEEEEecCCC-eEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080 17 TGFLAVFSYSDKTVRDIV-----KVRVSWVRRRDW-HILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ 81 (113)
Q Consensus 17 tv~~G~~a~L~C~v~~~~-----~~~V~W~k~~~~-~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 81 (113)
.+..|++|.++|.+...+ .+.|.||..++. .+-..+...+..++||-+.. ..|.|-=++..
T Consensus 43 ~I~~GeTvEIR~~l~reG~y~~t~Y~iRYFQ~dGkG~L~~~~g~~~~pND~Y~L~~----~~FRLYYTS~s 109 (137)
T PF12988_consen 43 KIKKGETVEIRCELKREGNYADTRYTIRYFQPDGKGTLRMDDGTVLLPNDRYPLEK----EVFRLYYTSRS 109 (137)
T ss_dssp S--TTEEEEEEEEEEESS--SS---EEEEE-SSS-EEEEETTS-EE-TTSEEE-S-----SEEEEEEEE-S
T ss_pred ccCCCCEEEEEEEEecCceecccEEEEEEEeecCCEEEEecCCcEeccccceecCc----CEEEEEEecCC
Confidence 457799999999997544 468999987753 34333445566788887642 46677655544
No 203
>PHA03282 envelope glycoprotein E; Provisional
Probab=92.87 E-value=0.19 Score=39.64 Aligned_cols=42 Identities=14% Similarity=0.140 Sum_probs=30.4
Q ss_pred CCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCCCCe---eEEEEece
Q psy14080 59 DARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTT---SHSQNAPG 106 (113)
Q Consensus 59 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~---s~~~~L~V 106 (113)
++|..+. +.+|.|.+++++|+|+|+=.+...+.. ...+.|.|
T Consensus 116 ~~rvs~~------n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V 160 (540)
T PHA03282 116 PPRVAVV------NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVV 160 (540)
T ss_pred CcceeEe------cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEe
Confidence 5677765 557999999999999999998654432 33355554
No 204
>PHA03189 UL14 tegument protein; Provisional
Probab=90.17 E-value=5.7 Score=29.99 Aligned_cols=81 Identities=12% Similarity=-0.035 Sum_probs=42.5
Q ss_pred cceEEEecCCcEEEEEEEccCCCCEEE-----EEecCCCeEEEec--c-eEE-------cCCCCEEEEEeCCCCcEEEEE
Q psy14080 13 GQISTGFLAVFSYSDKTVRDIVKVRVS-----WVRRRDWHILTSG--V-LTY-------TNDARFQVIHTDGSDDWNLQI 77 (113)
Q Consensus 13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~-----W~k~~~~~~l~~~--~-~~~-------~~~~R~~~~~~~~~~~~~L~I 77 (113)
+....+..|+.++++|.+....=+.|+ -|-......|..+ + ..+ ..+.++++..-.-...++|.
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLt- 137 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLT- 137 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEE-
Confidence 445678889999999999754322221 1113322222221 1 111 12334444310111234555
Q ss_pred ccCCCCCCEEEEEeecC
Q psy14080 78 KFLQKRDNGTYECQAQP 94 (113)
Q Consensus 78 ~~v~~~D~G~Y~C~~~~ 94 (113)
-++..+-+|+|.|.+-+
T Consensus 138 F~v~t~taG~Y~CvLrN 154 (348)
T PHA03189 138 FRVSTSTAGMYECVLRN 154 (348)
T ss_pred EEEEecccceEEEEecc
Confidence 36777889999999943
No 205
>PHA03052 Hypothetical protein; Provisional
Probab=89.19 E-value=0.91 Score=26.56 Aligned_cols=28 Identities=14% Similarity=0.022 Sum_probs=19.7
Q ss_pred eEEEecCCcEEEEEEEc---cCCCCEEEEEe
Q psy14080 15 ISTGFLAVFSYSDKTVR---DIVKVRVSWVR 42 (113)
Q Consensus 15 ~~tv~~G~~a~L~C~v~---~~~~~~V~W~k 42 (113)
.+.+..|..++|+|+++ +.....|.|.-
T Consensus 6 ~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~ 36 (69)
T PHA03052 6 GIVTSLGSNLTITCKVSLRPPTTDADVFWIS 36 (69)
T ss_pred cEEEEccCCceEeEEEEecCCCcceEEEEEe
Confidence 34566678899999997 23356788853
No 206
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=89.09 E-value=1.1 Score=30.57 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCCCEEEEEeecCC
Q psy14080 70 SDDWNLQIKFLQKRDNGTYECQAQPY 95 (113)
Q Consensus 70 ~~~~~L~I~~v~~~D~G~Y~C~~~~~ 95 (113)
++..-|+|++.+++|+|.|+=.++-+
T Consensus 121 ~~~~lL~i~~p~~~dsG~Y~lRV~l~ 146 (161)
T PF01688_consen 121 ENGVLLRIRNPRPEDSGIYYLRVWLD 146 (161)
T ss_pred CcceEEEeCCCCcccceEEEEEEEEC
Confidence 45678999999999999999999754
No 207
>PF06214 SLAM: Signaling lymphocytic activation molecule (SLAM) protein; InterPro: IPR010407 This entry is found in several mammalian signalling lymphocytic activation molecule (SLAM) proteins. Optimal T cell activation and expansion require engagement of the TCR plus co-stimulatory signals delivered through accessory molecules. SLAM, a 70 kDa co-stimulatory molecule belonging to the Ig superfamily, is defined as a human cell surface molecule that mediates CD28-independent proliferation of human T cells and IFN-gamma production by human Th1 and Th2 clones []. SLAM has also been recognised as a receptor for Measles virus [].; GO: 0004872 receptor activity, 0046649 lymphocyte activation, 0009986 cell surface, 0016021 integral to membrane; PDB: 3ALX_D 3ALZ_B 3ALW_A.
Probab=88.70 E-value=0.38 Score=30.95 Aligned_cols=73 Identities=16% Similarity=0.086 Sum_probs=40.5
Q ss_pred EEEecCCcEEEEEEEccCCC-------CEEEEEecCC----CeEEEec----ceEEcCCCCEEEEEeCCCCcEEEEEccC
Q psy14080 16 STGFLAVFSYSDKTVRDIVK-------VRVSWVRRRD----WHILTSG----VLTYTNDARFQVIHTDGSDDWNLQIKFL 80 (113)
Q Consensus 16 ~tv~~G~~a~L~C~v~~~~~-------~~V~W~k~~~----~~~l~~~----~~~~~~~~R~~~~~~~~~~~~~L~I~~v 80 (113)
+....|.++.|+=+..+... --|.|-+..+ ..+...+ ....--.+||+... .+.+|.|-.-
T Consensus 35 i~~~LGs~vlLpLt~egI~KSmnkSi~IlVt~a~Sp~~~vkkKIvSldl~eg~sp~yledgY~Fhl----EnLsL~Il~S 110 (126)
T PF06214_consen 35 ILQQLGSSVLLPLTSEGINKSMNKSIHILVTMAKSPGSSVKKKIVSLDLSEGGSPRYLEDGYKFHL----ENLSLEILES 110 (126)
T ss_dssp EEEETTS-EEEESSSTSTSTT----SEEEEEEESSSTT---EEEEEE-TTS-SS-EESSSSEEEET----TTTEEEETT-
T ss_pred HHHHhCcceeeecchhhhhhhhccceEEEEEeccCCccchhheEEEeccccCCCccccccccEEec----ccceeehhcc
Confidence 34456778888877664431 1345654322 1233322 11111246888763 6889999999
Q ss_pred CCCCCEEEEEee
Q psy14080 81 QKRDNGTYECQA 92 (113)
Q Consensus 81 ~~~D~G~Y~C~~ 92 (113)
+.+|+|.|+-.+
T Consensus 111 rkE~EGWYfmtl 122 (126)
T PF06214_consen 111 RKEDEGWYFMTL 122 (126)
T ss_dssp -GGG-EEEEEEE
T ss_pred ccccCceEEEEe
Confidence 999999998765
No 208
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=87.94 E-value=0.97 Score=35.29 Aligned_cols=88 Identities=9% Similarity=0.017 Sum_probs=49.3
Q ss_pred ceEEEecCCcE-EEEEEEccCC-CCEEEEEecCCC-e---E-EEecceEEcCCC-CEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080 14 QISTGFLAVFS-YSDKTVRDIV-KVRVSWVRRRDW-H---I-LTSGVLTYTNDA-RFQVIHTDGSDDWNLQIKFLQKRDN 85 (113)
Q Consensus 14 ~~~tv~~G~~a-~L~C~v~~~~-~~~V~W~k~~~~-~---~-l~~~~~~~~~~~-R~~~~~~~~~~~~~L~I~~v~~~D~ 85 (113)
-++.+.-|++. .|.|.++... -..|--+|.... . + +...+. ..+. =|-. .....+++.+.|+..+|+
T Consensus 19 ynIi~~~gd~~~nlTCiLP~~~~ADkvIviKGn~~~nt~ki~~sI~Na--g~dn~CyCG---d~dkeYsf~~~Nvs~sdE 93 (500)
T PHA02914 19 YNIFLRNEDEELALTCILPAAKMADKVVLIKGNDMNNTKEIESSINNA--GEDNVCYCG---DPDKEYSFIEENIGEHED 93 (500)
T ss_pred ceEEEecCceEEeeEEEcCCCccccEEEEEeccCCCCeeEEEEeccCC--CCCCccccC---CCcceeEEEecCcccccC
Confidence 35566677888 9999998543 234555553321 1 1 111110 0010 1110 012578999999999999
Q ss_pred EEEEEeecCCCCe--eEEEEece
Q psy14080 86 GTYECQAQPYTTT--SHSQNAPG 106 (113)
Q Consensus 86 G~Y~C~~~~~~~~--s~~~~L~V 106 (113)
|.|.|........ .+.+.|.|
T Consensus 94 GrYrCIFYLn~~EtyrH~I~vrV 116 (500)
T PHA02914 94 GDFKCIFYLGDNESHKHEILVRK 116 (500)
T ss_pred CcEEEEEEeCCceeEEEEEEEEE
Confidence 9999999654433 33444443
No 209
>PHA03282 envelope glycoprotein E; Provisional
Probab=87.13 E-value=1.1 Score=35.65 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCCCEEEEEeecCCC
Q psy14080 70 SDDWNLQIKFLQKRDNGTYECQAQPYT 96 (113)
Q Consensus 70 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 96 (113)
+++..|++.|++.+|+|.|-|.+..++
T Consensus 330 ~n~VdL~F~nAp~saSGLYVfVl~yNG 356 (540)
T PHA03282 330 GHTVNLQLRDASEASGGLYVCVVYVNG 356 (540)
T ss_pred CCccceEecCCCcccCceEEEEEEECC
Confidence 455699999999999999999996554
No 210
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=86.23 E-value=4.3 Score=30.94 Aligned_cols=21 Identities=14% Similarity=0.048 Sum_probs=16.4
Q ss_pred cEEEEEEEccCC--CCEEEEEec
Q psy14080 23 FSYSDKTVRDIV--KVRVSWVRR 43 (113)
Q Consensus 23 ~a~L~C~v~~~~--~~~V~W~k~ 43 (113)
.++|.|.+.+.- .-.|.|.|.
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 579999998763 346799885
No 211
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=84.20 E-value=2.6 Score=24.26 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=11.2
Q ss_pred cEEEEEccCCCCCCE
Q psy14080 72 DWNLQIKFLQKRDNG 86 (113)
Q Consensus 72 ~~~L~I~~v~~~D~G 86 (113)
.-.|+|-+|....+|
T Consensus 49 ~qNLTLinVt~~~~G 63 (63)
T PF02440_consen 49 GQNLTLINVTKTYNG 63 (63)
T ss_pred CCeEEEEEecccccC
Confidence 347888888887765
No 212
>PHA03273 envelope glycoprotein C; Provisional
Probab=82.19 E-value=12 Score=29.86 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=24.0
Q ss_pred cEEEEEccCCCCCCEEEEEeecC-CCCeeEEEEece
Q psy14080 72 DWNLQIKFLQKRDNGTYECQAQP-YTTTSHSQNAPG 106 (113)
Q Consensus 72 ~~~L~I~~v~~~D~G~Y~C~~~~-~~~~s~~~~L~V 106 (113)
.+.|.|+.+..+++|+|+=.+.. +.......++.|
T Consensus 197 ~~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV 232 (486)
T PHA03273 197 KFPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTV 232 (486)
T ss_pred ccceEEEecchhhceEEEEEEecCCCceeeeeEEEE
Confidence 47899999999999999866532 233333344444
No 213
>KOG3515|consensus
Probab=79.29 E-value=5.5 Score=33.48 Aligned_cols=71 Identities=17% Similarity=0.122 Sum_probs=42.1
Q ss_pred EEecCCcEEEEEEEc--cCCCCEEEEEecCCCeEEEecceEEcCCCCEEEE---EeCC-CCcEEEEEccCCCCCCEEEEE
Q psy14080 17 TGFLAVFSYSDKTVR--DIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVI---HTDG-SDDWNLQIKFLQKRDNGTYEC 90 (113)
Q Consensus 17 tv~~G~~a~L~C~v~--~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~---~~~~-~~~~~L~I~~v~~~D~G~Y~C 90 (113)
....+..+.+.|... ..+.+.+.|+... ...+.. .+.+..+. +... ...-.|.+...+.+|.|.|+|
T Consensus 108 ~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~-r~e~~~------~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC 180 (741)
T KOG3515|consen 108 FQVDKGVVQIICSAKVAGRPNPNLRWGFNN-RAELNA------VNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTC 180 (741)
T ss_pred hhhcCCeEEEEEeecCCCCCCcceeeeecc-EEeecc------cCCcccccccccCceeccccceeeEEEEecCCceeEc
Confidence 346688899999665 4466788997632 111111 11111110 0000 123468888889999999999
Q ss_pred eecC
Q psy14080 91 QAQP 94 (113)
Q Consensus 91 ~~~~ 94 (113)
.+..
T Consensus 181 ~A~n 184 (741)
T KOG3515|consen 181 PANN 184 (741)
T ss_pred cccc
Confidence 9954
No 214
>PHA03290 envelope glycoprotein I; Provisional
Probab=79.27 E-value=4.7 Score=30.69 Aligned_cols=27 Identities=19% Similarity=0.101 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCCCCEEEEEeecCCC
Q psy14080 70 SDDWNLQIKFLQKRDNGTYECQAQPYT 96 (113)
Q Consensus 70 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 96 (113)
+...-|+|++.+++|+|.|+=.++-++
T Consensus 126 e~~vLL~I~~P~~~DSGiY~LRV~Ldg 152 (357)
T PHA03290 126 DAEIIFKINKPGIEDAGIYLLLVQLDH 152 (357)
T ss_pred CcceEEEeCCCCcccCeeEEEEEEeCC
Confidence 456799999999999999999997553
No 215
>KOG3611|consensus
Probab=78.49 E-value=4.7 Score=33.86 Aligned_cols=63 Identities=19% Similarity=0.161 Sum_probs=38.3
Q ss_pred cEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080 23 FSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP 94 (113)
Q Consensus 23 ~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 94 (113)
+..|.|...+... .+.|+.+........ ....+++.... ...-|.+..++..|+|.|.|....
T Consensus 571 ~~~l~c~~~~~~a-~~~w~~~~~~~~~~~---~~~~~~~~~~~-----~~G~lll~~~q~~~~G~y~c~~~e 633 (737)
T KOG3611|consen 571 SEVLRCVPSSNQA-PVVWYHQSTKDGRKE---EVRQRDVVSRT-----DEGGLVLLSVQKLDGGTYPCYADE 633 (737)
T ss_pred cceeecccccccc-ceeeEeeccCccccc---eeccCcceeec-----ccCceeEEEEeeccCccccccccc
Confidence 5789998876543 388997763211000 00112232221 234478889999999999999954
No 216
>PHA03286 envelope glycoprotein E; Provisional
Probab=78.14 E-value=3.6 Score=32.59 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.2
Q ss_pred EEEEccCCCCCCEEEEEeecCCC
Q psy14080 74 NLQIKFLQKRDNGTYECQAQPYT 96 (113)
Q Consensus 74 ~L~I~~v~~~D~G~Y~C~~~~~~ 96 (113)
+|++.|++.+|+|.|-|.+..++
T Consensus 308 nL~f~nA~~s~SGLYVfVl~yNG 330 (492)
T PHA03286 308 SFRLANAQPTDAGLYVVVALYNG 330 (492)
T ss_pred ceeecCCCcccCceEEEEEEECC
Confidence 59999999999999999996443
No 217
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=77.21 E-value=2.4 Score=33.42 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=20.8
Q ss_pred CCcEEEEEccCCCCCCEEEEEeecCCCC
Q psy14080 70 SDDWNLQIKFLQKRDNGTYECQAQPYTT 97 (113)
Q Consensus 70 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~ 97 (113)
++...|++.|++.+|+|.|-|.+..++.
T Consensus 266 ~~~~~l~f~~a~~~~sGLYv~V~~~ngh 293 (439)
T PF02480_consen 266 SNGVDLQFTNAPESASGLYVFVVYYNGH 293 (439)
T ss_dssp TTSSSEEESS--GGG-EEEEEEEEETTE
T ss_pred CCCcceEecCCCcccCceEEEEEEECCe
Confidence 4566999999999999999999965543
No 218
>PHA03289 envelope glycoprotein I; Provisional
Probab=77.12 E-value=6.1 Score=29.97 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCCCEEEEEeecCC
Q psy14080 70 SDDWNLQIKFLQKRDNGTYECQAQPY 95 (113)
Q Consensus 70 ~~~~~L~I~~v~~~D~G~Y~C~~~~~ 95 (113)
+...-|+|++.+++|+|.|+=.++-+
T Consensus 119 e~gvLL~I~~Pr~~DSGiYyLRV~Ld 144 (352)
T PHA03289 119 EKGLLLTIIEPRMSDTGIYYIRVSLA 144 (352)
T ss_pred CCceEEEeCCCCcccCeeEEEEEEeC
Confidence 45679999999999999999999754
No 219
>PHA03292 envelope glycoprotein I; Provisional
Probab=75.88 E-value=6.3 Score=30.58 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCCCEEEEEeecCCC
Q psy14080 70 SDDWNLQIKFLQKRDNGTYECQAQPYT 96 (113)
Q Consensus 70 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 96 (113)
+...-|.|++-+++|+|.|+=.++.++
T Consensus 125 e~~vLL~I~~P~~~DSGiY~LRV~Ldg 151 (413)
T PHA03292 125 ETNVLLNITGPQPADSGAYILRVKLDH 151 (413)
T ss_pred CcceEEEeCCCCcccceeEEEEEEeCC
Confidence 456799999999999999999997553
No 220
>PHA03283 envelope glycoprotein E; Provisional
Probab=74.73 E-value=6.2 Score=31.80 Aligned_cols=28 Identities=14% Similarity=0.060 Sum_probs=23.5
Q ss_pred CCCcEEEEEccCCCCCCEEEEEeecCCC
Q psy14080 69 GSDDWNLQIKFLQKRDNGTYECQAQPYT 96 (113)
Q Consensus 69 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 96 (113)
..+...|++.|+..+|+|.|-|.+..++
T Consensus 311 ~~~~v~L~f~nap~~~SGLYVfVv~yNg 338 (542)
T PHA03283 311 AQNRVDLLFKNAPASASGLYVFVLLYNG 338 (542)
T ss_pred cCCCcceEeccCCcccCceEEEEEEECC
Confidence 3456799999999999999999996544
No 221
>PHA03283 envelope glycoprotein E; Provisional
Probab=69.58 E-value=26 Score=28.42 Aligned_cols=40 Identities=13% Similarity=-0.019 Sum_probs=29.6
Q ss_pred CCcEEEEEccCCCCCCEEEEEeecCC-CCeeEEEEeceecc
Q psy14080 70 SDDWNLQIKFLQKRDNGTYECQAQPY-TTTSHSQNAPGLGD 109 (113)
Q Consensus 70 ~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~s~~~~L~V~g~ 109 (113)
.+..-|+|.++.++|+|+|+=-...+ ......+.|.|+++
T Consensus 131 ~~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~ 171 (542)
T PHA03283 131 PERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKP 171 (542)
T ss_pred CCCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCC
Confidence 34568999999999999999877533 34445666777773
No 222
>PHA03269 envelope glycoprotein C; Provisional
Probab=68.27 E-value=15 Score=29.58 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=26.1
Q ss_pred CCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080 60 ARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92 (113)
Q Consensus 60 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 92 (113)
++|..-..++.+.+.|.|+++..+|+|+|+=.+
T Consensus 276 ~~yi~p~~a~p~~~pL~I~sltaATeGvY~Wrv 308 (566)
T PHA03269 276 EKYIIPDRKTTSDFSLHILSLDASTEGTYIWRV 308 (566)
T ss_pred ceEEeccCCCCCccceEEeecccccCceEEEEE
Confidence 455543345678899999999999999998665
No 223
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=67.93 E-value=26 Score=21.59 Aligned_cols=76 Identities=9% Similarity=0.016 Sum_probs=43.0
Q ss_pred ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcE-EEEEccCCCCCCEEEEE
Q psy14080 12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDW-NLQIKFLQKRDNGTYEC 90 (113)
Q Consensus 12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~-~L~I~~v~~~D~G~Y~C 90 (113)
.+++..|..|+++.++|+.+=.....+.|- .. -.+-.+.. +..| .+.++||+. |+ .-.|
T Consensus 9 ~P~~~vV~~G~Sv~VNCStsC~~p~~~GLE--T~-------------L~k~~~~~---g~~W~~f~LsnV~~-ds-~~~C 68 (91)
T PF03921_consen 9 SPEEPVVPPGGSVWVNCSTSCPQPEKIGLE--TS-------------LSKTELDS---GPQWKAFQLSNVTE-DS-SPLC 68 (91)
T ss_dssp ESSEEEEETTEEEEEEEEESSSS-SEEEEE--SS-------------SEEEEEEE---ETTEEEEEEEEE-S-CE-EEEE
T ss_pred ECCccEECCCCCEEEEEcCCCCCCCcceEE--Ee-------------cCCcccCC---CCcEEEEEEEcccc-CC-eEEE
Confidence 456678899999999999863333345552 10 01111111 1123 567788886 64 5679
Q ss_pred eecCCC-CeeEEEEecee
Q psy14080 91 QAQPYT-TTSHSQNAPGL 107 (113)
Q Consensus 91 ~~~~~~-~~s~~~~L~V~ 107 (113)
.++=.+ ..+..+++.|-
T Consensus 69 ~~~C~g~Q~~~~~~ItVY 86 (91)
T PF03921_consen 69 FFNCSGEQSSASANITVY 86 (91)
T ss_dssp EEEETTEEEEEEEEEEEE
T ss_pred EEEcCCeEEEeEEeeEEe
Confidence 996443 44566666653
No 224
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=66.66 E-value=25 Score=20.95 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=21.8
Q ss_pred EEEEccCCCCCCEEEEEee-cCCCCe-eEEEEece
Q psy14080 74 NLQIKFLQKRDNGTYECQA-QPYTTT-SHSQNAPG 106 (113)
Q Consensus 74 ~L~I~~v~~~D~G~Y~C~~-~~~~~~-s~~~~L~V 106 (113)
.+.......+|+|...|.+ ...++. +...+|.|
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 4555677889999999999 444433 33444443
No 225
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=66.49 E-value=1.9 Score=33.95 Aligned_cols=40 Identities=15% Similarity=0.077 Sum_probs=0.0
Q ss_pred CcEEEEEccCCCCCCEEEEEeecCC--CCeeEEEEeceeccc
Q psy14080 71 DDWNLQIKFLQKRDNGTYECQAQPY--TTTSHSQNAPGLGDL 110 (113)
Q Consensus 71 ~~~~L~I~~v~~~D~G~Y~C~~~~~--~~~s~~~~L~V~g~~ 110 (113)
+...|.|.+++.+|+|+|+=-.... ......+.|.|++..
T Consensus 87 ~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~ 128 (439)
T PF02480_consen 87 NKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPA 128 (439)
T ss_dssp ------------------------------------------
T ss_pred cCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCC
Confidence 4568999999999999999887433 234455778887753
No 226
>PF15096 G6B: G6B family
Probab=65.99 E-value=4.8 Score=28.30 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=20.1
Q ss_pred CCCCCEEEEEeecCCCCeeEEEEeceecccc
Q psy14080 81 QKRDNGTYECQAQPYTTTSHSQNAPGLGDLL 111 (113)
Q Consensus 81 ~~~D~G~Y~C~~~~~~~~s~~~~L~V~g~~~ 111 (113)
...|+|+++|.... ...|+ ..|+|+||..
T Consensus 82 s~GDSGTFfCkGr~-e~ESR-T~LhVLGD~a 110 (224)
T PF15096_consen 82 SAGDSGTFFCKGRQ-EEESR-TVLHVLGDRA 110 (224)
T ss_pred hcCCccceEecCcc-cccce-eeeeeecccc
Confidence 36799999999643 22333 5788999853
No 227
>PHA03291 envelope glycoprotein I; Provisional
Probab=65.82 E-value=10 Score=29.26 Aligned_cols=27 Identities=11% Similarity=-0.065 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCCCEEEEEeecCCC
Q psy14080 70 SDDWNLQIKFLQKRDNGTYECQAQPYT 96 (113)
Q Consensus 70 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 96 (113)
+..--|+|++.+.+|+|.|.=.++-++
T Consensus 126 e~~vLL~i~~P~~~DsGiYvLRV~vdg 152 (401)
T PHA03291 126 ARQPLLRARGAARAVVGLYVLRVWVEG 152 (401)
T ss_pred ccceEEEecCCCcccceeEEEEEEeCC
Confidence 356789999999999999999997654
No 228
>PHA03281 envelope glycoprotein E; Provisional
Probab=65.77 E-value=11 Score=30.73 Aligned_cols=27 Identities=11% Similarity=-0.041 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCCCCEEEEEeecCCC
Q psy14080 70 SDDWNLQIKFLQKRDNGTYECQAQPYT 96 (113)
Q Consensus 70 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 96 (113)
++...|++.|+..+|+|.|-|.+..++
T Consensus 472 ~n~vdL~F~nApasaSGLYVfVl~yNG 498 (642)
T PHA03281 472 DGGSALKFVDAAESLSGLYVFIIHFNG 498 (642)
T ss_pred CCCcceEeccCCcccCceEEEEEEECC
Confidence 456689999999999999999996544
No 229
>PHA03270 envelope glycoprotein C; Provisional
Probab=64.51 E-value=71 Score=25.44 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=17.8
Q ss_pred EEEEccCCCCCCEEEEEee
Q psy14080 74 NLQIKFLQKRDNGTYECQA 92 (113)
Q Consensus 74 ~L~I~~v~~~D~G~Y~C~~ 92 (113)
.|.|+.++.+.+|+|+=.+
T Consensus 183 ~L~I~slt~aTeGvY~Wr~ 201 (466)
T PHA03270 183 RLVIQELTLATQGMYYWAR 201 (466)
T ss_pred eEEEEEcccccceEEEEEE
Confidence 3999999999999999987
No 230
>PHA03286 envelope glycoprotein E; Provisional
Probab=61.23 E-value=32 Score=27.46 Aligned_cols=41 Identities=15% Similarity=-0.039 Sum_probs=30.1
Q ss_pred CcEEEEEccCCCCCCEEEEEeecCCC--CeeEEEEeceecccc
Q psy14080 71 DDWNLQIKFLQKRDNGTYECQAQPYT--TTSHSQNAPGLGDLL 111 (113)
Q Consensus 71 ~~~~L~I~~v~~~D~G~Y~C~~~~~~--~~s~~~~L~V~g~~~ 111 (113)
..-.|+|.|++++++|+|.=-...+. .....+.|.|+|+.+
T Consensus 125 ~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~ 167 (492)
T PHA03286 125 RGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGR 167 (492)
T ss_pred CCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCC
Confidence 44589999999999999998775442 334567777877643
No 231
>PF12591 DUF3762: Protein of unknown function (DUF3762); InterPro: IPR022239 This domain family is found in viruses, and is approximately 80 amino acids in length. The family is found in association with PF05533 from PFAM.
Probab=61.14 E-value=1.2 Score=26.20 Aligned_cols=32 Identities=19% Similarity=-0.057 Sum_probs=22.5
Q ss_pred CccCCceee-EeecceEEEecCCcEEEEEEEcc
Q psy14080 1 MVAAPGGIL-TAFGQISTGFLAVFSYSDKTVRD 32 (113)
Q Consensus 1 ~~~~p~~i~-~~~~~~~tv~~G~~a~L~C~v~~ 32 (113)
|+|+|..|. +..+...-....+-+.|.|++..
T Consensus 4 MVAiPVPi~FG~~p~Tawcs~s~aavLrcrLdy 36 (80)
T PF12591_consen 4 MVAIPVPISFGAMPTTAWCSPSDAAVLRCRLDY 36 (80)
T ss_pred eEEeecceeeccccccceeChhhhHHHhhhhhh
Confidence 788888776 44554444566788889998764
No 232
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=60.02 E-value=24 Score=24.00 Aligned_cols=38 Identities=26% Similarity=0.437 Sum_probs=21.8
Q ss_pred CCCcEEEEEccCCCCCCEEEEEeecCCCCee----EEEEeceec
Q psy14080 69 GSDDWNLQIKFLQKRDNGTYECQAQPYTTTS----HSQNAPGLG 108 (113)
Q Consensus 69 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~s----~~~~L~V~g 108 (113)
.+.+|.+.|. ...|.+.|.|.+......| ..+.+.|.|
T Consensus 58 TNEqW~msi~--~s~d~~~~sC~I~RPqgkSYL~F~qFkaev~G 99 (158)
T PF10572_consen 58 TNEQWQMSIG--LSDDNGHYSCIIWRPQGKSYLFFTQFKAEVKG 99 (158)
T ss_pred ccceEEEEee--ecCCCCceEEEEECCCCCcEEEEEEEEEEEec
Confidence 3456755543 2368888999996433333 334555554
No 233
>PF01082 Cu2_monooxygen: Copper type II ascorbate-dependent monooxygenase, N-terminal domain; InterPro: IPR000323 Copper type II, ascorbate-dependent monooxygenases [] are a class of enzymes that requires copper as a cofactor and which uses ascorbate as an electron donor. This family contains two related enzymes, Dopamine-beta-monooxygenase (1.14.17.1 from EC) and Peptidyl-glycine alpha-amidating monooxygenase (1.14.17.3 from EC). There are a few regions of sequence similarities between these two enzymes, two of these regions contain clusters of conserved histidine residues which are most probably involved in binding copper.; GO: 0004497 monooxygenase activity, 0005507 copper ion binding, 0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen, 0055114 oxidation-reduction process; PDB: 1YI9_A 3MLL_A 1SDW_A 3MID_A 1YIP_A 3PHM_A 3MIC_A 3MIB_A 1OPM_A 3MIG_A ....
Probab=50.52 E-value=16 Score=23.73 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=17.6
Q ss_pred cEEEEEccC-CCCCCEEEEEeecCCCC
Q psy14080 72 DWNLQIKFL-QKRDNGTYECQAQPYTT 97 (113)
Q Consensus 72 ~~~L~I~~v-~~~D~G~Y~C~~~~~~~ 97 (113)
.+.|...++ .+++.-+|.|.+...|.
T Consensus 3 ~~dl~~~~v~vP~~~t~Y~C~~~~lp~ 29 (132)
T PF01082_consen 3 TFDLLMPNVTVPSQDTTYWCFVFKLPD 29 (132)
T ss_dssp -EEEE-SSB---SSSSEEEEEEEE-S-
T ss_pred eEEEEcCCcCcCCCCCeEEEEEEECCc
Confidence 678999999 68999999999965444
No 234
>PHA03281 envelope glycoprotein E; Provisional
Probab=48.81 E-value=39 Score=27.71 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=28.4
Q ss_pred cEEEEEccCCCCCCEEEEEeec-CCCCee-EEEEeceeccc
Q psy14080 72 DWNLQIKFLQKRDNGTYECQAQ-PYTTTS-HSQNAPGLGDL 110 (113)
Q Consensus 72 ~~~L~I~~v~~~D~G~Y~C~~~-~~~~~s-~~~~L~V~g~~ 110 (113)
...|+|.+++++++|+|.=-.. +.+... ..+-|.|+|+.
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~ 337 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDE 337 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCc
Confidence 3489999999999999996664 334333 36778888765
No 235
>PHA03271 envelope glycoprotein C; Provisional
Probab=43.97 E-value=77 Score=25.26 Aligned_cols=35 Identities=11% Similarity=0.254 Sum_probs=25.3
Q ss_pred CCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080 60 ARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP 94 (113)
Q Consensus 60 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 94 (113)
++|.+--++.-+++.|.|+++.-.|+|.|.-...+
T Consensus 194 ~ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d 228 (490)
T PHA03271 194 NKYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRD 228 (490)
T ss_pred ceeEEeeccccceeeEEEEEeecccceEEEEEecC
Confidence 46665445667789999999999999955333333
No 236
>PHA03112 IL-18 binding protein; Provisional
Probab=40.37 E-value=1.1e+02 Score=20.44 Aligned_cols=76 Identities=8% Similarity=-0.096 Sum_probs=40.9
Q ss_pred EecCCcEEEEEEEccC-CC-CEEEEEecCCCeE---EEec--ceEEcCCCCEEEEEeCCCCcEEEEEccCCCC-CCEEEE
Q psy14080 18 GFLAVFSYSDKTVRDI-VK-VRVSWVRRRDWHI---LTSG--VLTYTNDARFQVIHTDGSDDWNLQIKFLQKR-DNGTYE 89 (113)
Q Consensus 18 v~~G~~a~L~C~v~~~-~~-~~V~W~k~~~~~~---l~~~--~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~-D~G~Y~ 89 (113)
..+|++++|.|+..+. +. ..++|.+.+.... .... ..+...+.+- ....+.-...|++.++..+ ...-.+
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~--~~~~~~~~~~l~l~~vt~~~~~T~~T 112 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKP--RTCDNEPRTDLIVYNVTDEMKFTKLT 112 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccc--cccCCcceeEEEEEecCCcceecceE
Confidence 3569999999997643 43 5799996542111 1100 0000001100 0001223457888888855 555899
Q ss_pred EeecCC
Q psy14080 90 CQAQPY 95 (113)
Q Consensus 90 C~~~~~ 95 (113)
|..-+.
T Consensus 113 CVL~D~ 118 (141)
T PHA03112 113 CVLMDL 118 (141)
T ss_pred EEEecC
Confidence 998653
No 237
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=39.29 E-value=14 Score=18.66 Aligned_cols=10 Identities=40% Similarity=0.883 Sum_probs=7.4
Q ss_pred CCCCEEEEEe
Q psy14080 82 KRDNGTYECQ 91 (113)
Q Consensus 82 ~~D~G~Y~C~ 91 (113)
..|.|.|+|.
T Consensus 20 ~~~dG~~yC~ 29 (36)
T PF11781_consen 20 YSDDGFYYCD 29 (36)
T ss_pred EccCCEEEhh
Confidence 3678888884
No 238
>PF11327 DUF3129: Protein of unknown function (DUF3129); InterPro: IPR021476 This eukaryotic family of proteins has no known function.
Probab=38.73 E-value=63 Score=22.41 Aligned_cols=27 Identities=11% Similarity=0.357 Sum_probs=21.3
Q ss_pred CCCcEEEEEccCCCCCCEEEEEeecCC
Q psy14080 69 GSDDWNLQIKFLQKRDNGTYECQAQPY 95 (113)
Q Consensus 69 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 95 (113)
..+..+++++.|...=+|-|.|.+...
T Consensus 89 ~gG~i~mt~hQVN~DGaGP~~C~iD~t 115 (184)
T PF11327_consen 89 AGGSISMTIHQVNADGAGPFTCDIDET 115 (184)
T ss_pred CCCEEEEEEEEecCCCCcCeEEEECCC
Confidence 456678888888877799999999643
No 239
>PF12904 Collagen_bind_2: Putative collagen-binding domain of a collagenase ; InterPro: IPR024749 This domain is likely to be the collagen-binding domain of a family of bacterial collagenase enzymes. The structure of one family member, Q8A905 from SWISSPROT, has been characterised. The domain occurs in the C-terminal region of the protein.; PDB: 3KZS_D.
Probab=31.48 E-value=1.3e+02 Score=18.50 Aligned_cols=41 Identities=20% Similarity=0.373 Sum_probs=20.6
Q ss_pred CEEEEEecCCCeEEEecceEEcCCCCEEEEEeC---CCCcEEEEEc
Q psy14080 36 VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTD---GSDDWNLQIK 78 (113)
Q Consensus 36 ~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~ 78 (113)
....||-.+.+.....+. +....+..+.... ..++|.|.+.
T Consensus 49 ~~a~WfdPR~G~~~~~g~--~~~~~~~~F~pP~~~~~g~DWVLVl~ 92 (93)
T PF12904_consen 49 VKAWWFDPRTGKYTYIGE--FSNKGIQTFTPPSGGGKGNDWVLVLD 92 (93)
T ss_dssp EEEEEEETTT-BEEEEEE--EES-SEEEE--SS-TTSS--EEEEEE
T ss_pred eeEEEEcCCCCCEEEeee--ecCCcceEecCCCCCCcCCCEEEEEe
Confidence 467899988776655542 3333444443322 2577888775
No 240
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=31.06 E-value=72 Score=19.76 Aligned_cols=12 Identities=25% Similarity=0.692 Sum_probs=8.4
Q ss_pred CCCCEEEEEeec
Q psy14080 82 KRDNGTYECQAQ 93 (113)
Q Consensus 82 ~~D~G~Y~C~~~ 93 (113)
.+--|.|||+..
T Consensus 72 s~~~GayyCegk 83 (96)
T PF10430_consen 72 SEAIGAYYCEGK 83 (96)
T ss_dssp SS--EEEEEEEE
T ss_pred ccccceEEEEEE
Confidence 456699999996
No 241
>PF03712 Cu2_monoox_C: Copper type II ascorbate-dependent monooxygenase, C-terminal domain; PDB: 1YI9_A 3MLL_A 1SDW_A 3MID_A 1YIP_A 3PHM_A 3MIC_A 3MIB_A 1OPM_A 3MIG_A ....
Probab=30.76 E-value=77 Score=21.13 Aligned_cols=27 Identities=11% Similarity=-0.283 Sum_probs=17.8
Q ss_pred ceEEEecCCcEEEEEEEccCCC-CEEEE
Q psy14080 14 QISTGFLAVFSYSDKTVRDIVK-VRVSW 40 (113)
Q Consensus 14 ~~~tv~~G~~a~L~C~v~~~~~-~~V~W 40 (113)
+.+++..|+.+...|.+.+... ..|.|
T Consensus 85 ~~v~i~~GD~l~~~C~Ydns~~~~~v~~ 112 (156)
T PF03712_consen 85 EPVTIPPGDTLRTECTYDNSDRPRVVFG 112 (156)
T ss_dssp EEEEE-TT-EEEEEEEEE-TT-SS-EEB
T ss_pred CceEecCCCEEEEEEEEeCCCCCceeec
Confidence 5678999999999999988643 35566
No 242
>PF01483 P_proprotein: Proprotein convertase P-domain; InterPro: IPR002884 This domain, termed the P domain is approximately 150 amino acids in length and C-terminal to a serine endopeptidase domain which belong to MEROPS peptidase family S8 (clan SB), subfamily S8B (kexin). The domain is primarily associated with the calcium-dependent serine endopeptidases, kex2/subtilisin proprotein convertases (PCs), which have been identified in all eukaryotes [] and in the gammaproteobacteria, Nostoc (cyanobacteria) and in Streptomyces avermitilis. The P domain appears necessary for folding and maintaining the endopeptidase catalytic domain and to regulate its calcium and acidic pH dependence. In addition, contained within the middle of the P domain in most PC family members is the cognate integrin binding RGD sequence [], which may be required for intracellular compartmentalization and maintenance of enzyme stability within the ER. The integrity of the RGD sequence of proprotein convertase PC1 is critical for its zymogen and C-terminal processing and for its cellular trafficking [, ]. The carboxy-terminal tail provides uniqueness to each PC family member being the least conserved region of all convertases [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1P8J_E 1OT5_B 2ID4_A 1R64_A 3HJR_A.
Probab=30.51 E-value=45 Score=19.60 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=14.0
Q ss_pred CCCcEEEEEcc-CCCCCCEE
Q psy14080 69 GSDDWNLQIKF-LQKRDNGT 87 (113)
Q Consensus 69 ~~~~~~L~I~~-v~~~D~G~ 87 (113)
..+.|+|+|.+ ....|.|.
T Consensus 60 ~~G~W~L~v~D~~~~~~~G~ 79 (87)
T PF01483_consen 60 ANGTWTLRVTDRNSPGDTGT 79 (87)
T ss_dssp --EEEEEEEEEBSSTTS-EE
T ss_pred CCCEEEEEEEECCCCCCcEE
Confidence 45799999999 77888885
No 243
>COG5475 Uncharacterized small protein [Function unknown]
Probab=30.45 E-value=1.1e+02 Score=17.27 Aligned_cols=33 Identities=9% Similarity=-0.081 Sum_probs=20.9
Q ss_pred ecceEEEecCCcEEEEEEEccCCCCEEEEEecC
Q psy14080 12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRR 44 (113)
Q Consensus 12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~ 44 (113)
.|..+++..|.+.-.---++..+.+...||+..
T Consensus 7 tgdvV~lKsGGP~Mtvs~~ss~Gmy~C~Wf~g~ 39 (60)
T COG5475 7 TGDVVTLKSGGPRMTVSGYSSDGMYECRWFDGY 39 (60)
T ss_pred cCcEEEeecCCceEEEeccccCCeEEEEEecCC
Confidence 345577777777654444444455678999754
No 244
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=29.41 E-value=60 Score=17.99 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=12.0
Q ss_pred EEccCC-CCCCEEEEEee
Q psy14080 76 QIKFLQ-KRDNGTYECQA 92 (113)
Q Consensus 76 ~I~~v~-~~D~G~Y~C~~ 92 (113)
.|+++. .+|.+.|.|..
T Consensus 38 ~V~~l~~l~dg~~yVa~g 55 (60)
T PF03607_consen 38 RVKSLDELEDGGSYVASG 55 (60)
T ss_dssp EESSGGGS-TTEEEEEES
T ss_pred EeCCHHHHCCCCEEEEEc
Confidence 455555 88999999984
No 245
>PF03043 Herpes_UL87: Herpesvirus UL87 family; InterPro: IPR004285 Members of this family are functionally uncharacterised.
Probab=28.19 E-value=37 Score=27.57 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=17.4
Q ss_pred EEEEEEccCCCCEEEEEecC
Q psy14080 25 YSDKTVRDIVKVRVSWVRRR 44 (113)
Q Consensus 25 ~L~C~v~~~~~~~V~W~k~~ 44 (113)
.+||.++......|.|||..
T Consensus 355 NFPs~VS~~~g~Nv~WFKAa 374 (538)
T PF03043_consen 355 NFPSMVSTKDGVNVSWFKAA 374 (538)
T ss_pred CCCeEEEcCCCceeeeeeec
Confidence 58899998888899999964
No 246
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=27.83 E-value=89 Score=19.97 Aligned_cols=25 Identities=8% Similarity=-0.237 Sum_probs=18.5
Q ss_pred CceeeEeecceEEEecCCcEEEEEE
Q psy14080 5 PGGILTAFGQISTGFLAVFSYSDKT 29 (113)
Q Consensus 5 p~~i~~~~~~~~tv~~G~~a~L~C~ 29 (113)
|.+-..+.+..+++.+|++|++.=.
T Consensus 6 ~~g~m~F~P~~v~V~~GdTV~f~n~ 30 (116)
T TIGR02375 6 AEGAMVFEPAYIRAAPGDTVTFVPT 30 (116)
T ss_pred CCCcEEEeCCEEEECCCCEEEEEEC
Confidence 5566677888888888888766543
No 247
>COG3689 Predicted membrane protein [Function unknown]
Probab=27.27 E-value=42 Score=24.84 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=20.0
Q ss_pred CCCCEEE--EEeecCCCCeeEEEEeceeccccc
Q psy14080 82 KRDNGTY--ECQAQPYTTTSHSQNAPGLGDLLM 112 (113)
Q Consensus 82 ~~D~G~Y--~C~~~~~~~~s~~~~L~V~g~~~~ 112 (113)
.+|+|+| .|...+........+|.|+|..-+
T Consensus 206 ~ADa~vygl~v~~~~~~~y~ndtWltvkGtl~~ 238 (271)
T COG3689 206 AADAGVYGLLVELDNQTDYKNDTWLTVKGTLSS 238 (271)
T ss_pred eccceeEEEEEEccccccCCCCceEEEEeEEEe
Confidence 5899999 455432233345568889987654
No 248
>PHA03264 envelope glycoprotein D; Provisional
Probab=27.26 E-value=2.9e+02 Score=21.72 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=23.1
Q ss_pred CCCCcEEEEEccCCCCCCEEEEEeecCCC
Q psy14080 68 DGSDDWNLQIKFLQKRDNGTYECQAQPYT 96 (113)
Q Consensus 68 ~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 96 (113)
.+.++.-|.|..--.+++|+|.=.+..++
T Consensus 153 ~TdDELGLvmAAPA~~~~GqYrRvI~Ing 181 (416)
T PHA03264 153 PTDDELGLLMAAPARLNEGQYRRALYIDG 181 (416)
T ss_pred cCccccceEEecCCcccCceEEEEEEECC
Confidence 35567789998888999999988776544
No 249
>PHA03375 hypothetical protein; Provisional
Probab=23.10 E-value=49 Score=27.99 Aligned_cols=21 Identities=14% Similarity=0.302 Sum_probs=17.7
Q ss_pred EEEEEEEccCCCCEEEEEecC
Q psy14080 24 SYSDKTVRDIVKVRVSWVRRR 44 (113)
Q Consensus 24 a~L~C~v~~~~~~~V~W~k~~ 44 (113)
..++|.++......|.|||..
T Consensus 625 TNFPs~IS~~~g~NVsWFKAA 645 (844)
T PHA03375 625 TNFPCMISNTDNVNVGWFKAA 645 (844)
T ss_pred cCCCeEEEcCCCcceeeeeec
Confidence 358899998888899999964
No 250
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=22.62 E-value=1.3e+02 Score=18.31 Aligned_cols=51 Identities=10% Similarity=0.027 Sum_probs=24.3
Q ss_pred CcEEEEEEEccCCCCEEEEEec-CCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080 22 VFSYSDKTVRDIVKVRVSWVRR-RDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQK 82 (113)
Q Consensus 22 ~~a~L~C~v~~~~~~~V~W~k~-~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 82 (113)
+.+.++|.+-......+.++.. ++..++..+ |..+. ...+.++|.+.+++|
T Consensus 48 ~~a~i~~~~~~~~~~~i~~~~l~~G~~V~v~g--------~~~~y--~~~G~~sl~v~~i~P 99 (99)
T PF13742_consen 48 EEASISCVIFRSRARRIRGFDLKDGDKVLVRG--------RVSFY--EPRGSLSLIVEDIDP 99 (99)
T ss_pred CCcEEEEEEEHHHHhhCCCCCCCCCCEEEEEE--------EEEEE--CCCcEEEEEEEEeEC
Confidence 3388888875433222221111 233444332 22222 334567888877764
No 251
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=22.34 E-value=3.4e+02 Score=21.67 Aligned_cols=61 Identities=10% Similarity=0.127 Sum_probs=35.6
Q ss_pred EecCCcEEEEEEEccCCCCEEEEEecC-CCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080 18 GFLAVFSYSDKTVRDIVKVRVSWVRRR-DWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE 89 (113)
Q Consensus 18 v~~G~~a~L~C~v~~~~~~~V~W~k~~-~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 89 (113)
..--+.+.+.|.+.......+. ||.. +..++..| +.++. ...++|.|.+.++++...|..+
T Consensus 46 tLKD~~A~i~c~mf~~~~~~l~-f~p~eG~~V~v~G--------~is~Y--~~rG~YQi~~~~~~p~G~G~L~ 107 (440)
T COG1570 46 TLKDERAQIRCVMFKGNNRRLK-FRPEEGMQVLVRG--------KISLY--EPRGDYQIVAESMEPAGLGALY 107 (440)
T ss_pred EEccCCceEEEEEEcCcccccC-CCccCCCEEEEEE--------EEEEE--cCCCceEEEEecCCcCChhHHH
Confidence 3445677777877644333333 3333 23444332 33333 4567889999999988877544
No 252
>KOG0200|consensus
Probab=21.11 E-value=68 Score=26.21 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=21.8
Q ss_pred CcEEEEEccCCCCCCEEEEEeecC
Q psy14080 71 DDWNLQIKFLQKRDNGTYECQAQP 94 (113)
Q Consensus 71 ~~~~L~I~~v~~~D~G~Y~C~~~~ 94 (113)
..+.+.+..+...|+|.|+|.+..
T Consensus 11 ~~~~~~~~~~~~~~~~~y~~~~~~ 34 (609)
T KOG0200|consen 11 NHWFLIIDSVVPGDKGFYTCLVSN 34 (609)
T ss_pred ccceEEEEEEEecCCccEEEEEec
Confidence 578999999999999999999966
No 253
>PHA03374 hypothetical protein; Provisional
Probab=21.02 E-value=57 Score=27.36 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=17.2
Q ss_pred EEEEEEccCCCCEEEEEecC
Q psy14080 25 YSDKTVRDIVKVRVSWVRRR 44 (113)
Q Consensus 25 ~L~C~v~~~~~~~V~W~k~~ 44 (113)
.++|.++......|+|||..
T Consensus 537 NFPs~vS~~~g~NVsWFKAA 556 (730)
T PHA03374 537 NFPSVVSTKDGLNVSWFKAA 556 (730)
T ss_pred CCCeEEEcCCCcceeeeeec
Confidence 47899998888899999975
Done!