RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14080
(113 letters)
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 66.4 bits (162), Expect = 9e-16
Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 4/76 (5%)
Query: 29 TVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY 88
V + W L D R +++ + ++ + + D G Y
Sbjct: 29 RVDQNDNTSLQWSNP-AQQTLYFDDKKALRDNRIELVR-ASWHELSISVSDVSLSDEGQY 86
Query: 89 ECQAQPYTTTSHSQNA 104
C +T + A
Sbjct: 87 TCSL--FTMPVKTSKA 100
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 66.7 bits (162), Expect = 2e-15
Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 2/66 (3%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYT 96
+ W L G D R Q++ + ++ I + D G Y C
Sbjct: 69 SLQWSNP-AQQTLYFGEKRALRDNRIQLVT-STPHELSISISNVALADEGEYTCSIFTMP 126
Query: 97 TTSHSQ 102
+
Sbjct: 127 VRTAKS 132
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 62.6 bits (152), Expect = 3e-14
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
Query: 24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTD-------GSDDWNLQ 76
+++ + + ++ V W + + + Y +F +H+ SD W L+
Sbjct: 17 QFANSQNQSLSELVVFWQDQENLVLNE----VYLGKEKFDSVHSKYMGRTSFDSDSWTLR 72
Query: 77 IKFLQKRDNGTYECQAQPYTTTSH 100
+ LQ +D G Y+C T
Sbjct: 73 LHNLQIKDKGLYQCIIHHKKPTGM 96
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 59.6 bits (144), Expect = 6e-13
Identities = 9/76 (11%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 29 TVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY 88
+ W+ + I + ++++Q++H ++ ++ + + +D G Y
Sbjct: 24 VTSLRKNSSLQWLTPSGFTIFLNEY-PVLKNSKYQLLHHS-ANQLSITVPNVTLQDEGVY 81
Query: 89 ECQAQPYTTTSHSQNA 104
+C Y+ + ++
Sbjct: 82 KCLH--YSDSVSTKEV 95
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 46.8 bits (110), Expect = 2e-07
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDA---------RFQVIHTDGSDDWNLQIKFLQKRDN 85
RV W+ +D + VL Y ++ R ++ +D +L ++ +QK D
Sbjct: 37 VDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADE 96
Query: 86 GTYECQAQ 93
G Y C+ +
Sbjct: 97 GIYTCEIR 104
Score = 37.5 bits (86), Expect = 3e-04
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 13/70 (18%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDA-------------RFQVIHTDGSDDWNLQIKFLQKR 83
+V+W+ H VL+Y ++ R + +D +++++ +++
Sbjct: 152 KVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKES 211
Query: 84 DNGTYECQAQ 93
D G Y C
Sbjct: 212 DQGIYTCSIY 221
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 43.7 bits (103), Expect = 2e-06
Identities = 15/68 (22%), Positives = 19/68 (27%), Gaps = 8/68 (11%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYT 96
+SW +G N R V+ D D L I D G Y+C
Sbjct: 34 DISWFSP-------NGEKLSPNQQRISVVWNDD-DSSTLTIYNANIDDAGIYKCVVTAED 85
Query: 97 TTSHSQNA 104
T
Sbjct: 86 GTQSEATV 93
Score = 32.9 bits (75), Expect = 0.013
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 12/57 (21%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ W + + D RF V+ + LQI+ ++K D GTY C+ +
Sbjct: 131 TIIW--KHK-----GRDVILKKDVRFIVL-----SNNYLQIRGIKKTDEGTYRCEGR 175
Score = 31.8 bits (72), Expect = 0.034
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
N+ H D L I+ + K D Y C A
Sbjct: 238 ENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA 273
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 41.7 bits (97), Expect = 9e-06
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 8/87 (9%)
Query: 23 FSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDA--------RFQVIHTDGSDDWN 74
FSY ++ + V W R + V T D RF+++ + +
Sbjct: 24 FSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCS 83
Query: 75 LQIKFLQKRDNGTYECQAQPYTTTSHS 101
L I + D G+Y + + +S
Sbjct: 84 LSIGDARMEDTGSYFFRVERGRDVKYS 110
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 40.3 bits (94), Expect = 2e-05
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 6/74 (8%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDG------SDDWNLQIKFLQKRDNGTY 88
++ W IL + T D ++ L IK L+ D+ TY
Sbjct: 24 SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 83
Query: 89 ECQAQPYTTTSHSQ 102
C+ +
Sbjct: 84 ICEVEDQKEEVQLL 97
Score = 28.8 bits (64), Expect = 0.32
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 70 SDDWNLQIKFLQKRDNGTYECQA 92
L + L+ +D+GT+ C
Sbjct: 140 QGGKTLSVSQLELQDSGTWTCTV 162
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 39.4 bits (92), Expect = 5e-05
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
++W R D T G + D R +V GS +L IK ++ D+G Y+C+A
Sbjct: 125 EITWKRAVDGFTFTEGDKSL--DGRIEVKGQHGSS--SLHIKDVKLSDSGRYDCEAA 177
Score = 33.6 bits (77), Expect = 0.006
Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 13/55 (23%)
Query: 38 VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+SW R+ ++ + ++ + ++ L ++ + D G Y C+A
Sbjct: 36 ISW--FRNGKLIEE-------NEKYILKGSNTE----LTVRNIINSDGGPYVCRA 77
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 38.9 bits (90), Expect = 8e-05
Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 6/79 (7%)
Query: 21 AVFSYSDKTVRDIVKVRVSWVRR----RDWHILTSGVLTYTNDARFQVIH--TDGSDDWN 74
+ + V ++ VSW + I + F+ ++ +
Sbjct: 9 VTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFF 68
Query: 75 LQIKFLQKRDNGTYECQAQ 93
L + +G Y C+ +
Sbjct: 69 LVVTAANISHDGNYLCRMK 87
Score = 25.8 bits (56), Expect = 3.0
Identities = 9/59 (15%), Positives = 13/59 (22%), Gaps = 13/59 (22%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKF---LQKRDNGTYECQA 92
V W+ + DGS L + L K + C
Sbjct: 135 HVQWLMPEG-----VEPAPTAANGGVM-KEKDGS----LSVAVDLSLPKPWHLPVTCVG 183
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 38.6 bits (90), Expect = 1e-04
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 38 VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
++W R D T G + D R +V GS +L IK ++ D+G Y+C+A
Sbjct: 32 ITWKRAVDGFTFTEG--DKSLDGRIEVKGQHGSS--SLHIKDVKLSDSGRYDCEA 82
Score = 34.0 bits (78), Expect = 0.005
Identities = 11/41 (26%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 53 VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
VL N + T L+I D G Y C A
Sbjct: 140 VLPAKNTTNLKTYSTGRKMI--LEIAPTSDNDFGRYNCTAT 178
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 38.6 bits (89), Expect = 1e-04
Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 9/77 (11%)
Query: 36 VRVSWVRRRDWHILTSGVLTYTNDA--------RFQVIHTDGSDDWNLQIKFLQKRDNGT 87
+V+W + + + + R + + D +++ L+ D G
Sbjct: 48 TQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLR-PSFTDGTIRLSRLELEDEGV 106
Query: 88 YECQAQPYTTTSHSQNA 104
Y C+ + T +
Sbjct: 107 YICEFATFPTGNRESQL 123
Score = 28.2 bits (62), Expect = 0.54
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 66 HTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ + + GTY C+A
Sbjct: 277 GVEAQNRTLFFKGPINYSLAGTYICEAT 304
Score = 25.5 bits (55), Expect = 5.1
Identities = 7/57 (12%), Positives = 12/57 (21%), Gaps = 4/57 (7%)
Query: 46 WHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PYTTTSHS 101
W G Y T S ++ ++ + C S
Sbjct: 170 WETRLKGEAEYQEIRNPNGTVTVIS---RYRLVPSREAHQQSLACIVNYHMDRFKES 223
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction
immunology, IGSF, cell SU receptor signalling,
glycosylation, membrane protein; HET: NAG; 2.90A {Homo
sapiens}
Length = 118
Score = 37.5 bits (87), Expect = 2e-04
Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 7/75 (9%)
Query: 24 SYSDKTVRDIVKVRVSWVRRRD------WHILTSGVLTYTNDARFQVIHTDGSD-DWNLQ 76
+ +++W R + +H + + F + +L+
Sbjct: 23 YLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR 82
Query: 77 IKFLQKRDNGTYECQ 91
+ L+ D G Y C
Sbjct: 83 MFGLRVEDEGNYTCL 97
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin
fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP:
b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 37.9 bits (88), Expect = 2e-04
Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 8/57 (14%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+SW +G N R V+ D D L I D G Y+C
Sbjct: 34 DISWFSP-------NGEKLSPNQQRISVVWNDD-DSSTLTIYNANIDDAGIYKCVVT 82
Score = 36.3 bits (84), Expect = 7e-04
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 12/59 (20%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ W + + D RF + ++ LQI+ ++K D GTY C+ +
Sbjct: 129 PPTIIWKHK-------GRDVILKKDVRFI-VLSNNY----LQIRGIKKTDEGTYRCEGR 175
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 37.6 bits (87), Expect = 2e-04
Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
V W RD IL T T + D L+I LQ D G Y+C
Sbjct: 34 EVHW--LRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVF 88
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 36.7 bits (84), Expect = 5e-04
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDG------SDDWNLQIKFLQKRDNGTY 88
++ W IL + T D ++ L IK L+ D+ TY
Sbjct: 23 SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 82
Query: 89 ECQAQ 93
C+ +
Sbjct: 83 ICEVE 87
Score = 28.6 bits (63), Expect = 0.39
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 70 SDDWNLQIKFLQKRDNGTYECQA 92
L + L+ +D+GT+ C
Sbjct: 139 QGGKTLSVSQLELQDSGTWTCTV 161
Score = 26.3 bits (57), Expect = 2.2
Identities = 4/47 (8%), Positives = 13/47 (27%), Gaps = 2/47 (4%)
Query: 49 LTSGVLTYTNDARFQVIHTDGSDDWNLQI--KFLQKRDNGTYECQAQ 93
L + ++ + + +L + Q +G +
Sbjct: 231 LKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALE 277
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 36.4 bits (84), Expect = 7e-04
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ W++ + +++ +R +++ D NL I ++ D G Y+C AQ
Sbjct: 140 TLIWIKDGV-PLDDLKAMSFGASSRVRIV-----DGGNLLISNVEPIDEGNYKCIAQ 190
Score = 33.3 bits (76), Expect = 0.007
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 54 LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQNA 104
++ +V DG+ + ++ +++D G Y C A+ + S++A
Sbjct: 50 VSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHA 100
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 35.5 bits (82), Expect = 8e-04
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 13/57 (22%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ W + GVL T D+R + +G LQI++ + D G Y C A
Sbjct: 39 TILWRKD--------GVLVSTQDSRIKQ-LENGV----LQIRYAKLGDTGRYTCIAS 82
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 35.5 bits (82), Expect = 0.001
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 14/57 (24%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
VSW + L ++R + GS L+I +QK D G Y C A+
Sbjct: 131 SVSW--IKGDSALRE-------NSRIA-VLESGS----LRIHNVQKEDAGQYRCVAK 173
Score = 33.9 bits (78), Expect = 0.004
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 12/57 (21%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+SW R+ ++ D R+ + L I ++ D+G Y C A
Sbjct: 38 EISW--TRNKILIK------LFDTRYSIRENGQL----LTILSVEDSDDGIYCCTAN 82
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 35.8 bits (82), Expect = 0.001
Identities = 10/57 (17%), Positives = 15/57 (26%), Gaps = 1/57 (1%)
Query: 38 VSWVRRRDWHILTSGVLTYTNDARFQV-IHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ W S + + G I + NGT EC+A
Sbjct: 438 IDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAY 494
Score = 29.6 bits (66), Expect = 0.16
Identities = 9/56 (16%), Positives = 12/56 (21%), Gaps = 6/56 (10%)
Query: 38 VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
W T Y I L + L+ + GTY
Sbjct: 346 QQW--IYMNRTFTDKWEDYPKSENESNIRYVSE----LHLTRLKGTEGGTYTFLVS 395
Score = 27.3 bits (60), Expect = 1.3
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 6/58 (10%)
Query: 36 VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
V +W +R+ + + L I + D+G + C A
Sbjct: 242 VYSTW--KRENSQTKLQEKYNSWHHGDFNYERQAT----LTISSARVNDSGVFMCYAN 293
Score = 26.6 bits (58), Expect = 2.3
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 75 LQIKFLQKRDNGTYECQAQPYTTTS 99
+ + + G Y C + + S
Sbjct: 82 WITEKAEATNTGKYTCTNKHGLSNS 106
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 35.4 bits (81), Expect = 0.001
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 29 TVRDIVKVRVSWVRRRDW-HILTSGVLTYTNDARFQ-VIHTDGSDDWNLQIKFLQKRDNG 86
+V ++ + R+ W + + + SG + ++ D +++ ++ I L+ D G
Sbjct: 21 SVEELAQTRIYWQKEKKMVLTMMSGDMNI--WPEYKNRTIFDITNNLSIVILALRPSDEG 78
Query: 87 TYECQAQPYTTTSHSQ 102
TYEC Y + +
Sbjct: 79 TYECVVLKYEKDAFKR 94
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell
immunoglobulin mucin, signaling protein; 1.95A {Mus
musculus} PDB: 3kaa_A*
Length = 109
Score = 34.5 bits (79), Expect = 0.002
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 35 KVRVSWVRRRDWHILTSG-VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
K W + + + T +TY +R+Q+ D +L IK + D+GTY C+ Q
Sbjct: 33 KGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQ 92
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 35.4 bits (81), Expect = 0.002
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 13/78 (16%)
Query: 29 TVRDIVKVRVSWVRRRDWHILTSGVLTYTNDA------------RFQVIHTD-GSDDWNL 75
+ D + + W+ + + V+ + R D S D ++
Sbjct: 27 SPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASI 86
Query: 76 QIKFLQKRDNGTYECQAQ 93
+ LQ D GTY+C+ +
Sbjct: 87 NVTNLQLSDIGTYQCKVK 104
Score = 28.5 bits (63), Expect = 0.42
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 13/57 (22%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ W + D + T + T + +K +GTY C Q
Sbjct: 153 QFEWQKLSD---------SQTMPTPWLAEMTSPV----ISVKNASSEYSGTYSCTVQ 196
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 35.2 bits (81), Expect = 0.002
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Query: 37 RVSWVRRRDWHILTS---GVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+ W + D + T+ ++ + +G+ L+IK L+ D Y+
Sbjct: 32 DIKWEKTSDKKKIAQFRKEKETFKEKDTYK-LFKNGT----LKIKHLKTDDQDIYKVSI 85
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 35.5 bits (81), Expect = 0.002
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 38 VSWVRRRDWHILTSGVLTY----TNDARFQVIHTDGSD---DWNLQIKFLQKRDNGTYEC 90
++W R + + T + R + + + +L++ L+ D G Y C
Sbjct: 37 LTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTC 96
Query: 91 QAQPYTTTSHSQNA 104
+ S S +
Sbjct: 97 LFVTFPQGSRSVDI 110
Score = 30.5 bits (68), Expect = 0.085
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 70 SDDWNLQIKFLQKRDNGTYECQAQ 93
+ L I+ + K N T C
Sbjct: 265 AQGAQLLIRPVDKPINTTLICNVT 288
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 35.2 bits (81), Expect = 0.002
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 11/59 (18%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ W+ + + + D R V T G NL I + D G Y C A
Sbjct: 131 ALSYRWLLNEFPNFIPA-------DGRRFVSQTTG----NLYIAKTEASDLGNYSCFAT 178
Score = 31.8 bits (72), Expect = 0.030
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ R +V + G L+ L D+G Y+C A+
Sbjct: 336 ASQNRIEV--SGGE----LRFSKLVLEDSGMYQCVAE 366
Score = 28.7 bits (64), Expect = 0.40
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 74 NLQIKFLQKRDNGTYECQAQ-PYTTTSHS 101
L I+ + D GTYEC+A+ ++
Sbjct: 258 LLHIQNVDFEDEGTYECEAENIKGRDTYQ 286
Score = 26.0 bits (57), Expect = 3.1
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 12/70 (17%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP 94
W + + L G D+R+++ G + ++ +D G+Y+C A
Sbjct: 36 PATYRW--KMNGTELKMG-----PDSRYRL--VAGD---LVISNPVKAKDAGSYQCVATN 83
Query: 95 YTTTSHSQNA 104
T S+ A
Sbjct: 84 ARGTVVSREA 93
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 35.4 bits (81), Expect = 0.002
Identities = 7/57 (12%), Positives = 15/57 (26%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+W + D + +T R G + + + +C A
Sbjct: 438 SWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAY 494
Score = 29.7 bits (66), Expect = 0.16
Identities = 7/59 (11%), Positives = 15/59 (25%), Gaps = 5/59 (8%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
++W + L G + + + + D G Y C +
Sbjct: 257 GFGLTW--ELENKALEEGNYFEMSTYSTNRTMIRIL---FAFVSSVARNDTGYYTCSSS 310
Score = 29.3 bits (65), Expect = 0.24
Identities = 5/38 (13%), Positives = 11/38 (28%)
Query: 56 YTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ F + +++ K G Y A+
Sbjct: 361 TFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAE 398
Score = 28.5 bits (63), Expect = 0.45
Identities = 5/38 (13%), Positives = 12/38 (31%)
Query: 56 YTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
D++ + + + K L + C A+
Sbjct: 174 VLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCAR 211
Score = 25.4 bits (55), Expect = 5.0
Identities = 4/29 (13%), Positives = 8/29 (27%)
Query: 65 IHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
++ I + + G Y Q
Sbjct: 95 FDLQNRGVVSMVILKMTETQAGEYLLFIQ 123
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 34.9 bits (80), Expect = 0.002
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 37 RVSWVRRRDWHILT---SGVLTYTNDA---RFQVIHTDGSDDWNLQIKFLQKRDNGTYEC 90
R++W+ + IL +G T R + T+G+ L+I + K D G Y
Sbjct: 31 RLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGA----LRIYNVSKEDRGDYYM 86
Query: 91 QA 92
+
Sbjct: 87 RM 88
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 35.2 bits (81), Expect = 0.002
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 13/71 (18%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP 94
++ +W+ ++ RF V G NL I ++K D G Y C
Sbjct: 132 ELSYAWIFNEYPSY--------QDNRRF-VSQETG----NLYIAKVEKSDVGNYTCVVTN 178
Query: 95 YTTTSHSQNAP 105
T P
Sbjct: 179 TVTNHKVLGPP 189
Score = 31.0 bits (70), Expect = 0.056
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
R Q+ G+ L I + D G Y+C A
Sbjct: 337 LTRDRIQI--EQGT----LNITIVNLSDAGMYQCVA 366
Score = 29.4 bits (66), Expect = 0.23
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 14/57 (24%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ W RR D + + ++ L+I Q+ D G+YEC A+
Sbjct: 236 TILW-RRADGKPIARKARRHKSNG-------------ILEIPNFQQEDAGSYECVAE 278
Score = 27.1 bits (60), Expect = 1.5
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 14/71 (19%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQI-KFLQKRDNGTYECQAQ 93
K + W + + + F+ DGS L I + +D GTY+C A
Sbjct: 37 KPHIRW--KLNGTDVDI-------GMDFRYSVVDGS----LLINNPNKTQDAGTYQCIAT 83
Query: 94 PYTTTSHSQNA 104
T S+ A
Sbjct: 84 NSFGTIVSREA 94
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 34.5 bits (79), Expect = 0.002
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 8/79 (10%)
Query: 23 FSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTND--------ARFQVIHTDGSDDWN 74
FSY + D V W R + + V T RF ++ + +
Sbjct: 30 FSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCT 89
Query: 75 LQIKFLQKRDNGTYECQAQ 93
L I+ + D G Y + +
Sbjct: 90 LSIRDARMSDAGRYFFRME 108
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 34.8 bits (80), Expect = 0.002
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+SW R +L +N + ++ +T + L++ + D G Y C A
Sbjct: 47 SATISWFRDGQ-------LLPSSNYSNIKIYNTPSASY--LEVTPDSENDFGNYNCTAV 96
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 34.8 bits (80), Expect = 0.003
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 11/67 (16%)
Query: 38 VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTT 97
+ W + + + D+R V+ G LQI LQ D+G Y C A+ +
Sbjct: 153 IHWQKNQQD------LNPIPGDSRV-VVLPSG----ALQISRLQPGDSGVYRCSARNPAS 201
Query: 98 TSHSQNA 104
T A
Sbjct: 202 TRTGNEA 208
Score = 31.3 bits (71), Expect = 0.039
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
FQ+ NL+I + K D G Y+C A
Sbjct: 354 IPSDYFQI-----VGGSNLRILGVVKSDEGFYQCVA 384
Score = 30.6 bits (69), Expect = 0.076
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 13/58 (22%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+W R + ++ + + L I + D+GTY C
Sbjct: 250 PPSFTW--LRG------EEVIQLRSKKYSL-LGGSN----LLISNVTDDDSGTYTCVV 294
Score = 27.9 bits (62), Expect = 0.65
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDD-WNLQIKFLQKRDNGTYECQAQ-P 94
+ W ++D IL G D R Q + +GS N+ K D G Y+C+A
Sbjct: 53 VIKW--KKDGLILALG-----MDDRKQQL-PNGSLLIQNILHSRHHKPDEGLYQCEASLG 104
Query: 95 YTTTSHSQNA 104
+ + S+ A
Sbjct: 105 DSGSIISRTA 114
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 34.5 bits (79), Expect = 0.003
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 54 LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQNAP 105
+ T D R V T+G NL I ++ D G Y C + T +
Sbjct: 51 VFITMDKRRFVSQTNG----NLYIANVEASDKGNYSCFVSSPSITKSVFSKF 98
Score = 30.6 bits (69), Expect = 0.076
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 15/56 (26%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+ W R+ + S A L+I +Q D G YEC+A
Sbjct: 144 DIRW--RKVLEPMPST-------AEIST------SGAVLKIFNIQLEDEGIYECEA 184
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 33.5 bits (77), Expect = 0.003
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
D R I G+ LQIK L+ D GTY C A
Sbjct: 51 GRDPRAT-IQEQGT----LQIKNLRISDTGTYTCVA 81
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 34.1 bits (78), Expect = 0.003
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
V W +D + + FQ I D + +L I + D+ Y C+A
Sbjct: 72 EVMW--FKDDNPVK-------ESRHFQ-IDYDEEGNCSLTISEVCGDDDAKYTCKAV 118
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 34.4 bits (79), Expect = 0.004
Identities = 6/36 (16%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+ ++ + ++ L ++ + D G Y C+A
Sbjct: 236 EENEKYILKGSNTE----LTVRNIINSDGGPYVCRA 267
Score = 33.3 bits (76), Expect = 0.010
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 54 LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+T +D RF ++ + NLQI + K D G Y C+ +
Sbjct: 139 VTTISDNRFAMLANN-----NLQILNINKSDEGIYRCEGR 173
Score = 30.9 bits (70), Expect = 0.058
Identities = 10/36 (27%), Positives = 11/36 (30%), Gaps = 2/36 (5%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+ R V L I D G Y CQA
Sbjct: 46 ISTQRVVVQKEGVRS--RLTIYNANIEDAGIYRCQA 79
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 34.4 bits (79), Expect = 0.004
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+VSW +D L SG +++ I ++ ++ I + D G Y+C+A
Sbjct: 413 PFQVSW--HKDKRELRSG-------KKYK-IMSEN-FLTSIHILNVDSADIGEYQCKA 459
Score = 33.2 bits (76), Expect = 0.011
Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PYTTTSHSQN 103
+DA Q + LQI + G Y C A P T S S
Sbjct: 143 KDDANLQTSFIH--NVATLQILQTDQSHVGQYNCSASNPLGTASSSAK 188
Score = 32.5 bits (74), Expect = 0.021
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 10/59 (16%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ V+W + + +++ LQ + + G Y CQ +
Sbjct: 506 PISVAWFK--------DKGEIVRESDNIWISYSENIAT--LQFSRAEPANAGKYTCQIK 554
Score = 31.3 bits (71), Expect = 0.043
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 11/57 (19%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+++W +D + + + + ++ + L + + K D G Y C A
Sbjct: 228 KITW--AKD-----NREIRPGGNYKMTLVENTAT----LTVLKVTKGDAGQYTCYAS 273
Score = 29.8 bits (67), Expect = 0.17
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 54 LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ ++ R + + L++ L D+G Y C+A
Sbjct: 332 IQESSKFRMSFVESVAV----LEMYNLSVEDSGDYTCEAH 367
Score = 27.8 bits (62), Expect = 0.73
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+ +++ + +L I + D G Y C+A
Sbjct: 47 RSAPAYKMQFKNNV--ASLVINKVDHSDVGEYTCKA 80
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 33.4 bits (76), Expect = 0.004
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 36 VRVSWVRRRDWHILTSGVLTYTN--------DARFQVIHTDGSDDWNLQIKFLQKRDNGT 87
W R + L +TN +R+ + D +L I+ + D+G
Sbjct: 28 TTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGL 87
Query: 88 YECQ 91
Y C+
Sbjct: 88 YCCR 91
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 34.0 bits (78), Expect = 0.005
Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 13/56 (23%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+SW R+ ++ ++ + ++ L ++ + D G Y C+A
Sbjct: 129 AISW--FRNGKLIEEN-------EKYILKGSNTE----LTVRNIINSDGGPYVCRA 171
Score = 32.8 bits (75), Expect = 0.010
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 54 LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+T +D RF ++ + NLQI + K D G Y C+ +
Sbjct: 43 VTTISDNRFAML-----ANNNLQILNINKSDEGIYRCEGR 77
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 33.6 bits (77), Expect = 0.005
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 58 NDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQNA 104
N + + ++ L +K +++ D G Y CQ + T SQ
Sbjct: 45 NLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPV 91
Score = 25.1 bits (55), Expect = 4.8
Identities = 3/26 (11%), Positives = 7/26 (26%)
Query: 68 DGSDDWNLQIKFLQKRDNGTYECQAQ 93
G + + + C+A
Sbjct: 141 GGPAPSPSVLNVTGVTQSTMFSCEAH 166
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 33.6 bits (77), Expect = 0.005
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 12/56 (21%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
VSW+ + +T +D RF + + + LQI + K D G Y C+
Sbjct: 127 AVSWLYHNE-------EVTTISDNRFA-MLANNN----LQILNINKSDEGIYRCEG 170
Score = 32.1 bits (73), Expect = 0.021
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ R + +G L I D G Y CQA
Sbjct: 44 ISTQRVV-VQKEGVRS-RLTIYNANIEDAGIYRCQAT 78
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 33.1 bits (76), Expect = 0.005
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
D+ +++ + +L I+ + RD G Y C A
Sbjct: 51 RPDSAHKMLVRENGVH-SLIIEPVTSRDAGIYTCIAT 86
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 34.1 bits (77), Expect = 0.005
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 6/59 (10%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ + W R L + + R I + L + D G Y C +
Sbjct: 47 GLTLIWYWTRQDRDLEEPINFRLPENR---ISKEKD---VLWFRPTLLNDTGNYTCMLR 99
Score = 31.0 bits (69), Expect = 0.070
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 56 YTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
Y + Q + + NL +NG Y C
Sbjct: 160 YMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVT 197
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 33.9 bits (77), Expect = 0.006
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 4/56 (7%)
Query: 38 VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ W+ TS + T + G L++ +NG Y A
Sbjct: 278 LRWLFNGSVLNETSFIFTEFLEPAANETVRHGC----LRLNQPTHVNNGNYTLLAA 329
Score = 25.1 bits (54), Expect = 7.4
Identities = 4/56 (7%), Positives = 12/56 (21%), Gaps = 12/56 (21%)
Query: 38 VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
W+ + + + + + G + C A+
Sbjct: 190 AGWI--------LTELEQSATVMKSGGLPSLGL----TLANVTSDLNRKNVTCWAE 233
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 33.6 bits (77), Expect = 0.006
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
++W +D + T++ ++ LQI+ ++ D G YEC A
Sbjct: 139 EITW--FKD------FLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVAT 187
Score = 28.2 bits (63), Expect = 0.46
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 11/57 (19%)
Query: 38 VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ-KRDNGTYECQAQ 93
+ W + +++ RF+VI D L+I+ L+ RD YEC A
Sbjct: 38 IVW--NKKGKKVSNQ--------RFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVAS 84
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 33.5 bits (76), Expect = 0.006
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGS----DDWNLQIKFLQKRDNGTYECQA 92
+ W + + AR +H + + I L + D GTYEC+A
Sbjct: 52 EIQW--WFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRA 109
Query: 93 Q 93
Sbjct: 110 S 110
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 33.7 bits (77), Expect = 0.006
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ R + W+L ++ + D G Y C +
Sbjct: 61 KQEHRIGGYKVR-NQHWSLIMESVVPSDKGNYTCVVE 96
Score = 32.2 bits (73), Expect = 0.022
Identities = 8/57 (14%), Positives = 20/57 (35%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ W++ + + G + + S+ L + + + D G Y C+
Sbjct: 149 HIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVS 205
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain,
membrane, transmembrane, receptor; 1.60A {Mus musculus}
PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 33.5 bits (76), Expect = 0.006
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 36 VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSD-DWNLQIKFLQKRDNGTYECQAQ 93
+ +R + + + R ++ I +Q RD+G Y C
Sbjct: 32 TELEGIRAS-LQKVENDTSLQSE--RATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVI 87
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 33.7 bits (77), Expect = 0.006
Identities = 5/36 (13%), Positives = 8/36 (22%), Gaps = 1/36 (2%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+ G I + D+G Y
Sbjct: 159 AQTDHCNLKFEAG-RTAYFTINGVSTADSGKYGLVV 193
Score = 30.6 bits (69), Expect = 0.071
Identities = 8/36 (22%), Positives = 10/36 (27%), Gaps = 2/36 (5%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
R + T LQI D G Y +
Sbjct: 45 RYSDRVKTGVTGEQ--IWLQINEPTPNDKGKYVMEL 78
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 33.5 bits (77), Expect = 0.007
Identities = 8/57 (14%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
++W ++ ++ N+ +Q + S + ++++D G Y A+
Sbjct: 135 VITW--QKGQDLID-------NNGHYQ-VIVTRSFTSLVFPNGVERKDAGFYVVCAK 181
Score = 32.4 bits (74), Expect = 0.017
Identities = 7/35 (20%), Positives = 10/35 (28%)
Query: 59 DARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
D I L I + D Y+ +A
Sbjct: 48 DGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 33.4 bits (76), Expect = 0.007
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 5/58 (8%)
Query: 37 RVSWVRRRDWHI-LTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
RV W + L T +V + + + ++DNG Y C
Sbjct: 32 RVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSG----ITFSSVTRKDNGEYTCMVS 85
Score = 31.5 bits (71), Expect = 0.038
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 3/59 (5%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
SW +D + + T D +L + D+G Y CQAQ
Sbjct: 134 PSEYSW--FKDGISMLTADAKKTRAFMNSSFTIDPKSG-DLIFDPVTAFDSGEYYCQAQ 189
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo
sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 32.7 bits (75), Expect = 0.007
Identities = 10/57 (17%), Positives = 15/57 (26%), Gaps = 11/57 (19%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
V W + L + R L + D G Y C+A+
Sbjct: 44 VVVW--EKGGQQLAA-------SERLSFPADGAEH--GLLLTAALPTDAGVYVCRAR 89
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 32.3 bits (74), Expect = 0.008
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 11/57 (19%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
W +D +T ++++ G + L+I D+G Y C +
Sbjct: 37 TAIW--TKDGKAITQ-------GGKYKLSEDKGG--FFLEIHKTDTSDSGLYTCTVK 82
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 33.7 bits (77), Expect = 0.008
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 14/72 (19%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD-NGTYECQAQ 93
+ W+ I T D R +G +L + +D Y C A+
Sbjct: 146 SPVIFWMSSSMEPI--------TQDKRV-SQGHNG----DLYFSNVMLQDMQTDYSCNAR 192
Query: 94 PYTTTSHSQNAP 105
+ T + Q P
Sbjct: 193 FHFTHTIQQKNP 204
Score = 31.4 bits (71), Expect = 0.038
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 15/66 (22%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PY 95
++W + L S + N + L+I + + D+G Y C A
Sbjct: 253 DIAW--YKKGGDLPSDKAKFENFNK------------ALRITNVSEEDSGEYFCLASNKM 298
Query: 96 TTTSHS 101
+ H+
Sbjct: 299 GSIRHT 304
Score = 30.2 bits (68), Expect = 0.13
Identities = 3/19 (15%), Positives = 6/19 (31%)
Query: 74 NLQIKFLQKRDNGTYECQA 92
+ + Q Y+C
Sbjct: 368 TIIFRDTQISSRAVYQCNT 386
Score = 29.5 bits (66), Expect = 0.18
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 7/70 (10%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP 94
W R+ D R + G+ + + + G Y+C A+
Sbjct: 46 APSFHW--TRNSRFFNIA-----KDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARN 98
Query: 95 YTTTSHSQNA 104
T+ S
Sbjct: 99 KFGTALSNRI 108
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 33.0 bits (75), Expect = 0.009
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 61 RFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSH 100
R + GS L I L D YE ++ T T
Sbjct: 52 RVYLDTVSGS----LTIYNLTSSDEDEYEMESPNITDTMK 87
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 33.4 bits (75), Expect = 0.009
Identities = 15/57 (26%), Positives = 22/57 (38%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
R S D + T G + R + D +++ I L+K D G Y C A
Sbjct: 254 RQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAH 310
Score = 33.0 bits (74), Expect = 0.012
Identities = 11/68 (16%), Positives = 23/68 (33%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP 94
+ R + + G + + R ++ G+ + + + L RD G Y C
Sbjct: 368 LWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNG 427
Query: 95 YTTTSHSQ 102
T +
Sbjct: 428 DTLWRTTV 435
Score = 33.0 bits (74), Expect = 0.012
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 36 VRVSWVRRRDWH-----ILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC 90
R W R+ I + G ++ R + + + + + I L + D+G Y+C
Sbjct: 33 TRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKC 92
Query: 91 QA 92
Sbjct: 93 GL 94
Score = 32.7 bits (73), Expect = 0.015
Identities = 8/58 (13%), Positives = 16/58 (27%), Gaps = 1/58 (1%)
Query: 36 VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
W + + F + S +L + + + D G Y C +
Sbjct: 473 YEKYWCKWNNTGCQALPSQDEGPSKAFVNCD-ENSRLVSLTLNLVTRADEGWYWCGVK 529
Score = 32.7 bits (73), Expect = 0.018
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 37 RVSWVRRRDWH----ILTSGVLTYTNDARFQV-IHTDGSDDWNLQIKFLQKRDNGTYECQ 91
R S ++ + I +SG + R ++ I G +++ I L+ D G Y CQ
Sbjct: 144 RKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQ 203
Query: 92 AQ 93
A
Sbjct: 204 AG 205
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 33.0 bits (75), Expect = 0.010
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+W + +++ + + T G L L D G Y C+A+
Sbjct: 137 PSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGE----LVFDPLSASDTGEYSCEAR 191
Score = 32.2 bits (73), Expect = 0.021
Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 3/57 (5%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
RV W + + + + + K + + D GTY C
Sbjct: 35 RVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPT---GITFKSVTREDTGTYTCMVS 88
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein;
1.85A {Homo sapiens}
Length = 207
Score = 33.0 bits (75), Expect = 0.011
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
++++ + + ++ LQ D GTY Q Q
Sbjct: 45 FEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQ 81
Score = 31.4 bits (71), Expect = 0.031
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 66 HTDGSDDWNLQIKFLQKRDNGTYECQA 92
H L I K+D G YE
Sbjct: 164 HDFKDGICTLLITEFSKKDAGIYEVIL 190
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 32.8 bits (75), Expect = 0.012
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 11/56 (19%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+++W +D + +++ + + L + + K D G Y C A
Sbjct: 36 KITW--AKDNREIRP-------GGNYKMTLVENTA--TLTVLKVTKGDAGQYTCYA 80
Score = 32.4 bits (74), Expect = 0.020
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
++F++ + L++ L D+G Y C+A
Sbjct: 141 QESSKFRMSFVESVA--VLEMYNLSVEDSGDYTCEAH 175
Score = 32.0 bits (73), Expect = 0.022
Identities = 6/36 (16%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+ +++++ + ++ I + D G Y+C+A
Sbjct: 234 RSGKKYKIMSENFL--TSIHILNVDSADIGEYQCKA 267
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 32.8 bits (75), Expect = 0.013
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ FQ+ + D ++L I D+GTY A
Sbjct: 145 QSSLDFQI--SQEGDLYSLLIAEAYPEDSGTYSVNAT 179
Score = 32.0 bits (73), Expect = 0.025
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
VSW RD ++++ Q+ +DG L I + K ++G Y +A
Sbjct: 36 EVSW--FRDGQVISTS-----TLPGVQISFSDGRA--KLTIPAVTKANSGRYSLKAT 83
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 33.0 bits (75), Expect = 0.013
Identities = 8/37 (21%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
R + T + LQI D G Y +
Sbjct: 150 RYSDRVKTGVTG--EQIWLQINEPTPNDKGKYVMELF 184
Score = 31.0 bits (70), Expect = 0.052
Identities = 5/36 (13%), Positives = 10/36 (27%), Gaps = 1/36 (2%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+D + + I + D+G Y
Sbjct: 264 ASDDHCN-LKFEAGRTAYFTINGVSTADSGKYGLVV 298
Score = 28.7 bits (64), Expect = 0.30
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 13/56 (23%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+ W +D ++ D + + L I K+D G YE
Sbjct: 38 HIVW--YKDEREISV-------DEKHDFKDGICT----LLITEFSKKDAGIYEVIL 80
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 32.6 bits (74), Expect = 0.013
Identities = 10/71 (14%), Positives = 21/71 (29%), Gaps = 13/71 (18%)
Query: 34 VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
++ VS VR R ++ +++ I + + Y+C A
Sbjct: 118 LEAGVSLVRVRGRPLMRHTNYSFSPWH-------------GFTIHRAKFIQSQDYQCSAL 164
Query: 94 PYTTTSHSQNA 104
S +
Sbjct: 165 MGGRKVMSISI 175
Score = 27.6 bits (61), Expect = 0.87
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 65 IHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PYTTTSHS 101
+++DGS L ++ GTY C S +
Sbjct: 44 LYSDGSS-SILSTNNATFQNTGTYRCTEPGDPLGGSAA 80
Score = 27.6 bits (61), Expect = 0.90
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 75 LQIKFLQKRDNGTYECQAQ 93
L + + + G Y C A
Sbjct: 247 LNLDQVDFQHAGNYSCVAS 265
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 32.0 bits (73), Expect = 0.014
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 48 ILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQNAPGL 107
++G+ DARFQ+I D+++ I ++ D+G Y C A + +PG
Sbjct: 48 AFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKLKIEESPGA 107
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 32.5 bits (74), Expect = 0.014
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 71 DDWNLQIKFLQKRDNGTYECQAQ 93
D LQI+ ++ D G YEC A+
Sbjct: 161 KDGFLQIENSREEDQGKYECVAE 183
Score = 30.1 bits (68), Expect = 0.12
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQ----KRDNGTYECQAQPYTTTSHSQNA 104
+R+ V+ G + I ++ RD+ YEC A+ + S +A
Sbjct: 49 GTQSRYTVLEQPGG----ISILRIEPVRAGRDDAPYECVAENGVGDAVSADA 96
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 32.7 bits (74), Expect = 0.014
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
++++ + + ++ LQ D GTY Q Q
Sbjct: 150 FEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQ 186
Score = 31.1 bits (70), Expect = 0.058
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+ R + + + G+ + K L D G Y C
Sbjct: 44 EDSPRLE-VESKGNKTK-MTFKDLGMDDLGIYSCDV 77
Score = 27.6 bits (61), Expect = 0.96
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ D + + L I K+D G YE +
Sbjct: 264 SVDEKHDFKDGICT----LLITEFSKKDAGIYEVILK 296
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 31.9 bits (73), Expect = 0.014
Identities = 5/37 (13%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+V +++ + L I ++ G Y +
Sbjct: 49 QESEHMKVENSE--NGSKLTILAARQEHCGCYTLLVE 83
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 32.7 bits (74), Expect = 0.015
Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 7/88 (7%)
Query: 24 SYSDKTVRDIVKVRVSWVRRRD------WHILTSGVLTYTNDARFQVIHTDGSD-DWNLQ 76
+ +++W R + +H + + F D +L+
Sbjct: 22 YLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLR 81
Query: 77 IKFLQKRDNGTYECQAQPYTTTSHSQNA 104
+ L+ D G+Y C + S S +
Sbjct: 82 MFGLRVEDEGSYTCLFVTFPQGSRSVDI 109
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding,
immunoglobulin domain, kinase, membrane, nucleotid
binding; HET: NAG; 2.10A {Homo sapiens}
Length = 241
Score = 32.6 bits (74), Expect = 0.015
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 70 SDDWNLQIKFLQKRDNGTYECQAQ 93
W+L ++ + D G Y C +
Sbjct: 69 HQQWSLVMESVVPSDRGNYTCVVE 92
Score = 31.4 bits (71), Expect = 0.036
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 37 RVSWVRRRDW---HILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ W++ + + G T + + D L++ + +RD G Y C+A
Sbjct: 145 HIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEA--DVRLRLANVSERDGGEYLCRAT 202
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 32.8 bits (74), Expect = 0.016
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 13/57 (22%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
++ W +D L D+ + + + L I+ ++K D G Y CQA
Sbjct: 697 QIMW--FKDNETLVE-------DSGIVLKDGNRN----LTIRRVRKEDEGLYTCQAC 740
Score = 30.9 bits (69), Expect = 0.069
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 63 QVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
Q +G + + + Y+C+A
Sbjct: 503 QFALIEGKNKTVSTLVIQAANVSALYKCEAV 533
Score = 30.5 bits (68), Expect = 0.11
Identities = 9/57 (15%), Positives = 18/57 (31%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ + + L + +D +++K +D G Y C AQ
Sbjct: 589 QPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQ 645
Score = 29.7 bits (66), Expect = 0.19
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 8/55 (14%)
Query: 38 VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+ W+ + V +DG L I + D G Y+C
Sbjct: 59 LDWLWPNNQSGSEQRV--------EVTECSDGLFCKTLTIPKVIGNDTGAYKCFY 105
Score = 28.6 bits (63), Expect = 0.52
Identities = 8/56 (14%), Positives = 12/56 (21%), Gaps = 12/56 (21%)
Query: 38 VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
R + + G I D I G C+A+
Sbjct: 160 SLCARYPEKRFVPDG----------NRISWDSKK--GFTIPSYMISYAGMVFCEAK 203
Score = 27.8 bits (61), Expect = 0.83
Identities = 11/60 (18%), Positives = 16/60 (26%), Gaps = 3/60 (5%)
Query: 34 VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
V + +W D + Q L I + + D G Y C A
Sbjct: 254 VGIDFNWEYPS---SKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS 310
Score = 27.8 bits (61), Expect = 0.91
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 74 NLQIKFLQKRDNGTYECQAQ 93
L I + +RD G Y
Sbjct: 382 VLTIMEVSERDTGNYTVILT 401
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 31.6 bits (72), Expect = 0.017
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ AR QV T +I +Q D G Y +
Sbjct: 56 STSARHQVTTTKY--KSTFEISSVQASDEGNYSVVVE 90
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 32.6 bits (74), Expect = 0.017
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
R Q+ + + + L + + + D Y C Q
Sbjct: 508 PVSPRLQLSNGNRT----LTLFNVTRNDARAYVCGIQ 540
Score = 31.1 bits (70), Expect = 0.059
Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 59 DARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQNA 104
R Q+ + + + L + + + D +Y+C+ Q + S +
Sbjct: 154 SPRLQLSNGNRT----LTLFNVTRNDTASYKCETQNPVSARRSDSV 195
Score = 30.3 bits (68), Expect = 0.099
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 75 LQIKFLQKRDNGTYECQAQ-PYTTTSHS 101
L I + +NGTY C T ++S
Sbjct: 606 LFIAKITPNNNGTYACFVSNLATGRNNS 633
Score = 30.3 bits (68), Expect = 0.12
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 13/58 (22%)
Query: 36 VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
W ++ R Q+ + + + L + + + D G YEC Q
Sbjct: 318 TTYLWWVNNQSLPVSP---------RLQLSNDNRT----LTLLSVTRNDVGPYECGIQ 362
Score = 29.5 bits (66), Expect = 0.19
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 74 NLQIKFLQKRDNGTYECQAQ-PYTTTSHSQNA 104
L I + ++G+Y CQA T + +
Sbjct: 249 ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVT 280
Score = 28.4 bits (63), Expect = 0.48
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 38 VSWVR--RRDWHILTSGVLTYTNDARFQVIHTDG---SDDWNLQIKFLQKRDNGTYECQA 92
SW + R D + G + T A ++ + +L I+ + + D G Y
Sbjct: 31 YSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTLHV 90
Score = 26.8 bits (59), Expect = 1.6
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 63 QVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PYTTTSHS 101
+ L I + ++++G Y CQA + S +
Sbjct: 420 NIQQHTQE----LFISNITEKNSGLYTCQANNSASGHSRT 455
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 32.1 bits (73), Expect = 0.018
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 70 SDDWNLQIKFLQKRDNGTYECQAQPYTTTSHS 101
+ + +I + D+G Y C + +
Sbjct: 53 ASNMEYRINKPRAEDSGEYHCVYHFVSAPKAN 84
Score = 28.7 bits (64), Expect = 0.31
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 61 RFQVIHTDGSDDWNLQIKFLQKR-DNGTYECQA 92
RF +I+ + L I LQ D G YEC A
Sbjct: 143 RFFIINKENYT--ELNIVNLQITEDPGEYECNA 173
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 31.5 bits (72), Expect = 0.018
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+D + + +L + ++ D G Y C A+
Sbjct: 47 QSDDLHK-MIVSEKGLHSLIFEVVRASDAGAYACVAK 82
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 31.5 bits (72), Expect = 0.019
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 54 LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ RF + +TD D L I +QK+D G Y
Sbjct: 46 IHSQEQGRFHIENTD--DLTTLIIMDVQKQDGGLYTLSLG 83
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 31.7 bits (72), Expect = 0.020
Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 11/75 (14%)
Query: 24 SYSDKTVRDIVKVRVSWVR-----RRDWHILTSGVLTYTNDA---RFQVIHTDGSDDWNL 75
Y+ + K +W T ++ R + +
Sbjct: 22 DYTLEKFASSQK---AWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRV 78
Query: 76 QIKFLQKRDNGTYEC 90
++ LQ D+G Y+C
Sbjct: 79 RMVNLQVEDSGLYQC 93
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 32.2 bits (73), Expect = 0.020
Identities = 13/74 (17%), Positives = 19/74 (25%), Gaps = 10/74 (13%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQK---RDNGTYECQ 91
K ++W ++ D R DG NL + K D Y C
Sbjct: 130 KPLITW--KKRLSGADPNADVTDFDRRI-TAGPDG----NLYFTIVTKEDVSDIYKYVCT 182
Query: 92 AQPYTTTSHSQNAP 105
A+
Sbjct: 183 AKNAAVDEEVVLVE 196
Score = 31.4 bits (71), Expect = 0.046
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ ++ + + L K D G Y C+
Sbjct: 254 NGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVD 290
Score = 30.3 bits (68), Expect = 0.11
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Query: 58 NDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+ R V TD L IK ++ D G Y C+A
Sbjct: 351 SGGRATV--TDSG----LVIKGVKNGDKGYYGCRA 379
Score = 27.2 bits (60), Expect = 1.3
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 12/69 (17%)
Query: 36 VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY 95
V+ SW ++D + + +GS L Q D G Y+C A+
Sbjct: 37 VKYSW--KKDGKSYN------WQEHNAALRKDEGS----LVFLRPQASDEGHYQCFAETP 84
Query: 96 TTTSHSQNA 104
+ S+
Sbjct: 85 AGVASSRVI 93
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 32.3 bits (73), Expect = 0.021
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ R I W+L ++ + D G Y C +
Sbjct: 165 RGEHRIGGIKLRH-QQWSLVMESVVPSDRGNYTCVVE 200
Score = 31.9 bits (72), Expect = 0.031
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 37 RVSWVR--RRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ W++ + + Y + +T + L + + D G Y C A
Sbjct: 253 HIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAG 311
Score = 31.1 bits (70), Expect = 0.058
Identities = 11/68 (16%), Positives = 17/68 (25%), Gaps = 15/68 (22%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYT 96
W +D L R V LQ+ D+G Y C+ +
Sbjct: 40 PTVW--VKDGTGLVP-------SERVLV------GPQRLQVLNASHEDSGAYSCRQRLTQ 84
Query: 97 TTSHSQNA 104
+
Sbjct: 85 RVLCHFSV 92
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 31.3 bits (71), Expect = 0.022
Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 16/57 (28%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ W R L S + +G L I+ +Q D GTY C
Sbjct: 42 TLVW-TRLHNGKLPSRA-----------MDFNGI----LTIRNVQPSDAGTYVCTGS 82
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 32.2 bits (73), Expect = 0.024
Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 13/71 (18%)
Query: 34 VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+K VS +R G + S I+ + D+ TY C+
Sbjct: 118 LKDSVSLMR--------EGGRQVLRKTVYFF-----SPWRGFIIRKAKVLDSNTYVCKTM 164
Query: 94 PYTTTSHSQNA 104
S S
Sbjct: 165 VNGRESTSTGI 175
Score = 27.6 bits (61), Expect = 0.75
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 54 LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+ +D + + L + + +D G Y C A
Sbjct: 230 IPLNSDFQDNYYKKVRA----LSLNAVDFQDAGIYSCVA 264
Score = 27.6 bits (61), Expect = 0.94
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 1/52 (1%)
Query: 51 SGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PYTTTSHS 101
+G + + S L + ++ GTY C S +
Sbjct: 29 NGSVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTT 80
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 32.0 bits (73), Expect = 0.024
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 9/58 (15%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
K V W R G + ++++ G L I + D Y+ +A
Sbjct: 33 KPIVKWYR--------QGKEIIADGLKYRIQEFKG-GYHQLIIASVTDDDATVYQVRA 81
Score = 30.5 bits (69), Expect = 0.079
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
N+ +QVI T + ++++D G Y A+
Sbjct: 146 DNNGHYQVIVTRSFTS-LVFPNGVERKDAGFYVVCAK 181
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 31.2 bits (71), Expect = 0.026
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ ++ D + L IK + K+D G Y A
Sbjct: 57 QFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAV 93
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 32.1 bits (73), Expect = 0.026
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
++ R + + + LQI+ ++ D G YEC A
Sbjct: 153 ASNGRIKQLRSG-----ALQIESSEETDQGKYECVAT 184
Score = 28.6 bits (64), Expect = 0.33
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ-KRDNGTYECQAQ 93
RV+W + + S RF+ I D S L+I+ L+ RD YEC AQ
Sbjct: 37 RVTW--NKKGKKVNS--------QRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQ 84
Score = 26.7 bits (59), Expect = 1.8
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 74 NLQIKFLQKRDNGTYECQA 92
++ +D+ Y C A
Sbjct: 256 RNVLELTDVKDSANYTCVA 274
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 31.3 bits (71), Expect = 0.027
Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 11/85 (12%)
Query: 24 SYSDKTVRDIVKVRVSWVR-----RRDWHILTSGVLTYTNDA---RFQVIHTDGSDDWNL 75
Y+ + K +W T ++ R + +
Sbjct: 27 DYTLEKFASSQK---AWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRV 83
Query: 76 QIKFLQKRDNGTYECQAQPYTTTSH 100
++ LQ D+G Y+C H
Sbjct: 84 RMVNLQVEDSGLYQCVIYQPPKEPH 108
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 31.7 bits (72), Expect = 0.027
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 14/57 (24%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+SW ++D L ++ G L I + +K D G Y C
Sbjct: 143 TISW--KKDGSPLDDK--------DERITIRGG----KLMITYTRKSDAGKYVCVGT 185
Score = 25.9 bits (57), Expect = 2.7
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP 94
+ W + + + + ++ + + + D G Y C A+
Sbjct: 38 TPTIEW--YKGGERVETD--KDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARN 93
Query: 95 YTTTSHSQNA 104
Y + S +A
Sbjct: 94 YLGEAVSHDA 103
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 31.3 bits (71), Expect = 0.030
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 48 ILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQNAPGL 107
++G+ DARFQ+I D+++ I ++ D+G Y C A + + +PG
Sbjct: 58 AFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKAKIEESPGA 117
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2;
beta barrel, immunoglobulin fold, IGV domain, TIM,
immune system; 1.50A {Mus musculus}
Length = 115
Score = 31.1 bits (70), Expect = 0.030
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 23 FSYSDKTVRDIV--KVRVSWVRRRDWHILTSG-VLTYTNDARFQVIHTDGSDDWNLQIKF 79
+S + + I T+G +T+ ++R+Q+ + +L I+
Sbjct: 21 YSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIEN 80
Query: 80 LQKRDNGTYECQAQ 93
D G Y C +
Sbjct: 81 TVVGDGGPYCCVVE 94
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 31.5 bits (71), Expect = 0.032
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 38 VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
V W R + + I +G L+IK L + D+GTY
Sbjct: 30 VRWERGSTLVAEFKRKMKPFLKSGAFEILANGD----LKIKNLTRDDSGTYNVTV 80
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 30.8 bits (70), Expect = 0.033
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 12/57 (21%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+V W + L + R V +D D ++ + D+G YE Q
Sbjct: 55 QVVW--TKGGAPLDTS--------RVHVRTSD--FDTVFFVRQAARSDSGEYELSVQ 99
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 31.1 bits (70), Expect = 0.033
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 10/60 (16%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDD----WNLQIKFLQKRDNGTYECQA 92
+ W + W L S Q+ T + +QI + G Y C+
Sbjct: 41 TIKW-FKGKWMDLASK-----AGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEV 94
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 30.8 bits (70), Expect = 0.034
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 11/57 (19%)
Query: 36 VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
V+V W +R +++ ++ + T+G L ++ + D G+Y A
Sbjct: 37 VKVRW--QRGGSDISAS-------NKYG-LATEG-TRHTLTVREVGPADQGSYAVIA 82
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 31.4 bits (70), Expect = 0.036
Identities = 8/67 (11%), Positives = 18/67 (26%), Gaps = 1/67 (1%)
Query: 27 DKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQ-VIHTDGSDDWNLQIKFLQKRDN 85
R + ++ + + + F L++ + +D
Sbjct: 43 ASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDG 102
Query: 86 GTYECQA 92
G Y CQ
Sbjct: 103 GRYWCQV 109
Score = 29.1 bits (64), Expect = 0.27
Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 10/67 (14%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDW----------NLQIKFLQKRDNG 86
V+W + + Q T S + NL I+ + D G
Sbjct: 167 NVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAG 226
Query: 87 TYECQAQ 93
C+
Sbjct: 227 RVWCELA 233
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 30.5 bits (69), Expect = 0.038
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+ R W+L ++ + D G Y C
Sbjct: 50 KQEHRIGGYKVRN-QHWSLIMESVVPSDKGNYTCVV 84
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4;
beta barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 30.7 bits (69), Expect = 0.038
Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 35 KVRVSWVRRRDWHILTSG-VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
K + + T G + ++ ++ + +L I + D+G Y C+ +
Sbjct: 34 KGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIE 93
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 31.4 bits (71), Expect = 0.039
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Query: 46 WHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
W ++ + + +G L K +Q D G Y C A
Sbjct: 279 WVSPSNEQVLSQGSNGSVSVR-NGD----LFFKKVQVEDGGVYTCYAM 321
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 31.4 bits (71), Expect = 0.040
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 57 TNDARFQV---IHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
N+ R+QV + +G L I + D G Y+C A+
Sbjct: 471 ANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAK 510
Score = 31.4 bits (71), Expect = 0.041
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
K +V+W + L +++ + +G+ L + +QK + G Y C+A
Sbjct: 743 KPQVTWKKAVGDTPGEYKDLKKSDN----IRVEEGT----LHVDNIQKTNEGYYLCEAI 793
Score = 30.3 bits (68), Expect = 0.12
Identities = 6/37 (16%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ D L I+ ++ G + C A+
Sbjct: 662 SEDLGITTSRVGR-RGSVLTIEAVEASHAGNFTCHAR 697
Score = 29.5 bits (66), Expect = 0.23
Identities = 14/56 (25%), Positives = 16/56 (28%), Gaps = 9/56 (16%)
Query: 38 VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
W + T ND QV T L IK D+G Y C
Sbjct: 280 FRW--YKFIEGTTRKQAVVLNDRVKQVSGT-------LIIKDAVVEDSGKYLCVVN 326
Score = 29.5 bits (66), Expect = 0.24
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 63 QVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ H++ L+I+ ++K D G Y+C +
Sbjct: 383 AIGHSESV----LRIESVKKEDKGMYQCFVR 409
Score = 28.7 bits (64), Expect = 0.45
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 11/75 (14%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD-NGTYECQAQ 93
VSW D D ++ ++ G L I+ + D +Y+C+ +
Sbjct: 170 VEVVSW--HTDEEEN--YFPGAEYDGKY-LVLPSG----ELHIREVGPEDGYKSYQCRTK 220
Query: 94 -PYTTTSHSQNAPGL 107
T + G
Sbjct: 221 HRLTGETRLSATKGR 235
Score = 26.8 bits (59), Expect = 1.8
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKR-DNGTYECQAQ 93
+ + +V +G+ L I+ +++ D TY C A+
Sbjct: 568 PINRKQKVF-PNGT----LIIENVERNSDQATYTCVAK 600
Score = 26.1 bits (57), Expect = 3.1
Identities = 1/18 (5%), Positives = 6/18 (33%)
Query: 75 LQIKFLQKRDNGTYECQA 92
+ + + + + A
Sbjct: 1 MNMPNERLKWLMLFAAVA 18
Score = 26.1 bits (57), Expect = 3.5
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 18/76 (23%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIK------FLQKRDNGTY 88
+ W+R D + + + I +DG L + Q+ Y
Sbjct: 68 MPEIIWIRS-DGTAVG-------DVPGLRQISSDGK----LVFPPFRAEDYRQEVHAQVY 115
Query: 89 ECQAQPYTTTSHSQNA 104
C A+ + S++
Sbjct: 116 ACLARNQFGSIISRDV 131
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 31.2 bits (70), Expect = 0.044
Identities = 7/39 (17%), Positives = 11/39 (28%)
Query: 63 QVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHS 101
V+ D + K G Y C P + +
Sbjct: 39 VVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTAN 77
Score = 30.0 bits (67), Expect = 0.11
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 36 VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ-KRDNGTYECQA 92
+W + D L +++RF V + G L I+ L + D G Y C
Sbjct: 114 TDWAWYKITDSE---DKALMNGSESRFFVSSSQGR--SELHIENLNMEADPGQYRCNG 166
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 30.4 bits (69), Expect = 0.045
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+ ++ G L ++ L +D+GT +A
Sbjct: 55 HANELNEIDAQPG-GYHVLTLRQLALKDSGTIYFEA 89
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 31.2 bits (70), Expect = 0.045
Identities = 5/38 (13%), Positives = 11/38 (28%)
Query: 56 YTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ F + +++ K G Y A+
Sbjct: 361 TFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAE 398
Score = 28.9 bits (64), Expect = 0.34
Identities = 5/40 (12%), Positives = 10/40 (25%), Gaps = 1/40 (2%)
Query: 63 QVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PYTTTSHS 101
++ I + + G Y Q T +
Sbjct: 93 PHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTIL 132
Score = 27.3 bits (60), Expect = 1.1
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 75 LQIKFLQKRDNGTYECQAQ 93
+ + + D G Y C +
Sbjct: 292 AFVSSVARNDTGYYTCSSS 310
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 30.3 bits (69), Expect = 0.046
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
D R +G L+I ++ D G Y C+A
Sbjct: 47 RPDQRRFAEEAEG-GLCRLRILAAERGDAGFYTCKA 81
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 30.4 bits (69), Expect = 0.047
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+ + I D +L D+G Y A
Sbjct: 50 SPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA 85
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 30.0 bits (68), Expect = 0.051
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
N ++++ + DG L +K + K D+GTY C+
Sbjct: 44 ENSEKYEITYEDGVA--ILYVKDITKLDDGTYRCKV 77
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 30.7 bits (69), Expect = 0.055
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 37 RVSWVRRRD----WHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
++W+ + Q + + ++LQ+ L+ D G+Y Q
Sbjct: 30 FITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQI 89
Query: 93 QPYTTTSHSQ 102
T+ S
Sbjct: 90 STKTSAKLSS 99
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 30.1 bits (68), Expect = 0.060
Identities = 5/37 (13%), Positives = 12/37 (32%), Gaps = 6/37 (16%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
R ++ ++++ D+G Y C
Sbjct: 44 AESNRTRI------TGEEVEVQDSVPADSGLYACVTS 74
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 30.0 bits (68), Expect = 0.060
Identities = 4/37 (10%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
V + ++ ++ D+G Y+ + +
Sbjct: 44 ALAPELLVDAKSSTT--SIFFPSAKRADSGNYKLKVK 78
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor,
receptor tyrosine kinase, 3D-domain swapping,
transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 30.2 bits (68), Expect = 0.060
Identities = 6/40 (15%), Positives = 10/40 (25%)
Query: 53 VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
L + + + L +NG Y A
Sbjct: 45 PLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA 84
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 30.8 bits (70), Expect = 0.061
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
++++ + L + ++ D G Y C A
Sbjct: 49 IQSRKYKMSSDGRTH--TLTVMTEEQEDEGVYTCIAT 83
Score = 27.3 bits (61), Expect = 1.0
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKR-DNGTYECQA 92
N + +T+ +L +K +Q++ G Y+ Q
Sbjct: 145 QNSENITIENTE--HYTHLVMKNVQRKTHAGKYKVQL 179
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 30.6 bits (69), Expect = 0.068
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 68 DGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQNA 104
+ L + +D G Y C+ T SQ +
Sbjct: 60 PNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWS 96
Score = 30.6 bits (69), Expect = 0.076
Identities = 4/26 (15%), Positives = 7/26 (26%)
Query: 68 DGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ ++ GTY C
Sbjct: 160 THETKKLYMVPYVDLEHQGTYWCHVY 185
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 30.0 bits (67), Expect = 0.072
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 10/83 (12%)
Query: 14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDD- 72
+++ G FS + V W + W L+S Q+ +
Sbjct: 15 EVTVGGSITFSARVAGASLLKPPVVKW-FKGKWVDLSSK-----VGQHLQLHDSYDRASK 68
Query: 73 ---WNLQIKFLQKRDNGTYECQA 92
+ L I Q G+Y C+
Sbjct: 69 VYLFELHITDAQPAFTGSYRCEV 91
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 30.7 bits (69), Expect = 0.073
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 24 SYSDKTVRDIVKVRVSWVRR-RDWHILTSGVLTYTNDA-----RFQVIHTDGSD-DWNLQ 76
+ + D+ + V W ++ G R +++ S + LQ
Sbjct: 24 KFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQ 83
Query: 77 IKFLQKRDNGTYECQAQ 93
I ++ +D G Y C
Sbjct: 84 ITDVKLQDAGVYRCMIS 100
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 29.7 bits (67), Expect = 0.074
Identities = 7/44 (15%), Positives = 12/44 (27%), Gaps = 2/44 (4%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSH 100
++ G L I Q D+ Y A ++
Sbjct: 49 RPSTKYI-FEHKG-CQRILFINNCQMTDDSEYYVTAGDEKCSTE 90
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 29.7 bits (67), Expect = 0.075
Identities = 9/43 (20%), Positives = 12/43 (27%), Gaps = 2/43 (4%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTS 99
R I G L I ++ D G Y Y +
Sbjct: 49 RPSKRIT-ISHVG-RFHKLVIDDVRPEDEGDYTFVPDGYALSL 89
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 29.8 bits (67), Expect = 0.079
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 23 FSYSDKTVRDIVKVRVSWVRRRD---WHILTSGVLTYTNDA---RFQVIHTDGSDDWNLQ 76
FSY V + W ++ SG + R +++ NL
Sbjct: 24 FSYP-ADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLL 82
Query: 77 IKFLQKRDNGTYECQ 91
+K L+ D+GTY +
Sbjct: 83 LKDLKPEDSGTYNFR 97
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 29.7 bits (67), Expect = 0.083
Identities = 6/36 (16%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
++ ++ + + G L ++ + + G Y C+A
Sbjct: 52 SSSSKVR-VEAVG-CTRRLVVQQAGQAEAGEYSCEA 85
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 29.9 bits (67), Expect = 0.084
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 36 VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY 95
+V+W ++ + + L + F+ L ++ L D G Y C Y
Sbjct: 35 TQVNWEQQDQLLAICNADLGWHISPSFKD-RVAPGPGLGLTLQSLTVNDTGEYFCIYHTY 93
Query: 96 TTTSHSQNA 104
+++
Sbjct: 94 PDGTYTGRI 102
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 30.0 bits (67), Expect = 0.087
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 24 SYSDKTVRDIVKV--RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ 81
Y K + + + +S T +RF + + + + + L+
Sbjct: 33 QYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLR 92
Query: 82 KRDNGTYECQ 91
+ D+G Y C+
Sbjct: 93 EEDSGHYWCR 102
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 30.3 bits (68), Expect = 0.092
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDN-GTYECQAQ 93
VSW D Y D ++ ++ G L I+ + D +Y+C+ +
Sbjct: 135 VEVVSWHT--DEEENYFPGAEY--DGKY-LVLPSG----ELHIREVGPEDGYKSYQCRTK 185
Query: 94 PYTTTSHSQNAP 105
T +A
Sbjct: 186 HRLTGETRLSAT 197
Score = 30.3 bits (68), Expect = 0.12
Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 9/56 (16%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
W + T ND +V G+ L IK D+G Y C
Sbjct: 243 SFRW--YKFIEGTTRKQAVVLND---RVKQVSGT----LIIKDAVVEDSGKYLCVV 289
Score = 29.9 bits (67), Expect = 0.15
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 63 QVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ H++ L+I+ ++K D G Y+C +
Sbjct: 347 AIGHSESV----LRIESVKKEDKGMYQCFVR 373
Score = 26.1 bits (57), Expect = 3.4
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 18/76 (23%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIK------FLQKRDNGTY 88
+ W R D + + + I +DG L + Q+ Y
Sbjct: 33 MPEIIW-IRSDGTAVG-------DVPGLRQISSDGK----LVFPPFRAEDYRQEVHAQVY 80
Query: 89 ECQAQPYTTTSHSQNA 104
C A+ + S++
Sbjct: 81 ACLARNQFGSIISRDV 96
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 29.7 bits (67), Expect = 0.093
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+ + L + +Q D+G Y C+
Sbjct: 54 VESPALL-LQKED-TVRRLVLPAVQLEDSGEYLCEI 87
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 30.1 bits (67), Expect = 0.094
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 52 GVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
L + R +V T D ++ +K D G Y +
Sbjct: 84 KKLLCETEGRVRVETTK--DRSIFTVEGAEKEDEGVYTVTVK 123
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 30.2 bits (68), Expect = 0.097
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 70 SDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQ 102
+ + I +D+G+Y C+ + S+
Sbjct: 134 HHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSE 166
Score = 25.2 bits (55), Expect = 5.3
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 63 QVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYT 96
+I + S + I D+G Y CQ Q T
Sbjct: 47 SLISSQAS---SYFIDAATVDDSGEYRCQTQLST 77
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 30.5 bits (68), Expect = 0.097
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
Query: 36 VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-P 94
V W++ + V + + L I + D+G + C A
Sbjct: 219 VNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQET----LTISSARVDDSGVFMCYANNT 274
Query: 95 YTTTSHS 101
+ + + +
Sbjct: 275 FGSANVT 281
Score = 25.1 bits (54), Expect = 6.9
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 70 SDDWNLQIKFLQKRDNGTYECQAQPYTTTS 99
+ + + GTY C T+S
Sbjct: 54 NKKNEWIQEKAEATRTGTYTCSNSNGLTSS 83
Score = 25.1 bits (54), Expect = 6.9
Identities = 6/56 (10%), Positives = 11/56 (19%), Gaps = 12/56 (21%)
Query: 38 VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
S + + T A + + + C AQ
Sbjct: 123 YSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYH------------RLCVRCAAQ 166
>1neu_A Myelin P0 protein; structural protein, glycoprotein,
transmembrane, phosphorylation, immunoglobulin fold,
signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 29.6 bits (66), Expect = 0.11
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDA-----------RFQVIHTDGSDDWNLQIKFLQKR 83
+ +W + + + Y R Q + D ++ I L
Sbjct: 32 DISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYS 91
Query: 84 DNGTYECQ 91
DNGT+ C
Sbjct: 92 DNGTFTCD 99
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 30.1 bits (67), Expect = 0.12
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 70 SDDWNLQIKFLQKRDNGTYECQA 92
L + + ++ G Y C A
Sbjct: 159 GVKDRLIVMNVAEKHRGNYTCHA 181
Score = 28.2 bits (62), Expect = 0.52
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 11/59 (18%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
K ++W + T + + IH L + D+G Y C +
Sbjct: 35 KGTITWYK--------DDSKTPVSTEQASRIHQHKE---KLWFVPAKVEDSGHYYCVVR 82
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 30.2 bits (67), Expect = 0.12
Identities = 8/47 (17%), Positives = 13/47 (27%)
Query: 58 NDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQNA 104
+D R + L + Q D Y C + + A
Sbjct: 62 HDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATA 108
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 29.0 bits (65), Expect = 0.13
Identities = 5/37 (13%), Positives = 12/37 (32%), Gaps = 6/37 (16%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
R ++ ++++ D+G Y C
Sbjct: 50 VESNRTRIT------GEEVEVRDSIPADSGLYACVTS 80
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 29.5 bits (66), Expect = 0.15
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 56 YTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQ 102
Y + + + + N+ I D+GTY C + + S+
Sbjct: 121 YKDGEALKYWYENH----NISITNATVEDSGTYYCTGKVWQLDYESE 163
Score = 25.6 bits (56), Expect = 3.9
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 63 QVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ S +L I + D+G Y+CQ Q
Sbjct: 44 SLSEETNS---SLNIVNAKFEDSGEYKCQHQ 71
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 30.1 bits (66), Expect = 0.15
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 72 DWNLQIKFLQKRDNGTYECQAQ 93
NL I L + D+G Y+C ++
Sbjct: 585 RKNLLIFNLSEGDSGVYQCLSE 606
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 28.8 bits (65), Expect = 0.15
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
++ +T G L+I D+GTY
Sbjct: 50 QESSKIHYTNTSGV--LTLEILDCHTDDSGTYRAVC 83
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 29.7 bits (66), Expect = 0.15
Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 8/66 (12%)
Query: 29 TVRDIVKVRVSWVR-RRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGT 87
V V W R++ L V + D + + L I + D+GT
Sbjct: 204 IVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSI-------LHIPSAELEDSGT 256
Query: 88 YECQAQ 93
Y C
Sbjct: 257 YTCNVT 262
Score = 28.9 bits (64), Expect = 0.33
Identities = 8/40 (20%), Positives = 11/40 (27%)
Query: 65 IHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQNA 104
DG+ L + L D G Y C +
Sbjct: 43 KAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERK 82
Score = 27.0 bits (59), Expect = 1.4
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 73 WNLQIKFLQKRDNGTYECQA 92
++ Q F ++ +Y C+
Sbjct: 141 YDHQRGFSGIFEDRSYICKT 160
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 29.1 bits (65), Expect = 0.15
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 9/72 (12%)
Query: 37 RVSWVRRRDWHILT--SGVLTYTNDA---RFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ 91
+++W D I+ S Y R ++ G+ L I +QK DN TY +
Sbjct: 36 QLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGA----LYISKVQKEDNSTYIMR 91
Query: 92 AQPYTTTSHSQN 103
T
Sbjct: 92 VLKKTGNEQEWK 103
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 29.7 bits (66), Expect = 0.16
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 12/66 (18%)
Query: 27 DKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNG 86
+ RD V++ W + +L ++ +F + L + + D G
Sbjct: 146 SEFTRDKTDVKIQWYK--------DSLLLDKDNEKFLSVRGTTH----LLVHDVALEDAG 193
Query: 87 TYECQA 92
Y C
Sbjct: 194 YYRCVL 199
Score = 29.3 bits (65), Expect = 0.26
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 11/58 (18%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
++ ++W + T + ++ DG+ L + + D+GTY C
Sbjct: 54 RINLTWHK-------NDSARTVPGEEETRMWAQDGA----LWLLPALQEDSGTYVCTT 100
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 29.7 bits (66), Expect = 0.17
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 65 IHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ + + + KRD G Y C +
Sbjct: 215 VTSSRRFIASFNVVNTTKRDAGKYRCMIR 243
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 29.5 bits (66), Expect = 0.17
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 56 YTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PYTTTSHS 101
Y N F+ H + NL I NGTY C + TS
Sbjct: 118 YRNGKAFKFFHWNS----NLTILKTNISHNGTYHCSGMGKHRYTSAG 160
Score = 28.7 bits (64), Expect = 0.30
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 56 YTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
Y + +T QI ++ D+G Y C+A
Sbjct: 210 YMGSKTLRGRNTSS----EYQILTARREDSGLYWCEAA 243
Score = 28.0 bits (62), Expect = 0.66
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 74 NLQIKFLQKRDNGTYECQAQ 93
+ +I D+G Y CQ
Sbjct: 49 SYRITSASVNDSGEYRCQRG 68
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 29.8 bits (66), Expect = 0.18
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 71 DDWNLQIKFLQKRDNGTYECQAQ 93
NL I + D+G Y+C
Sbjct: 180 SGQNLIIHNPELEDSGRYDCYVH 202
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 29.0 bits (64), Expect = 0.18
Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 10/84 (11%)
Query: 13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDD 72
+ TG AV K + W + + W L S + ARF + S
Sbjct: 22 VSVETGKDAVVVAKVNGKELPDKPTIKWFKGK-WLELGSK-----SGARFSFKESHNSAS 75
Query: 73 ----WNLQIKFLQKRDNGTYECQA 92
L I + D G Y +
Sbjct: 76 NVYTVELHIGKVVLGDRGYYRLEV 99
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 29.5 bits (66), Expect = 0.18
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 70 SDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQ 102
+ + I +D+G+Y C+ + S+
Sbjct: 134 HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSE 166
Score = 25.6 bits (56), Expect = 3.7
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 63 QVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+I + S + I D+G Y CQ
Sbjct: 47 SLISSQAS---SYFIDAATVNDSGEYRCQTN 74
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 29.2 bits (65), Expect = 0.21
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 63 QVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQNA 104
++I+++GS L + + +D G Y
Sbjct: 65 EIIYSNGS----LLFQMITMKDMGVYTLDMTDENYRRTQATV 102
Score = 26.9 bits (59), Expect = 1.5
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 70 SDDWNLQIKFLQKRDNGTYECQAQ 93
++ L+I +++ D G Y+C+
Sbjct: 160 QNNSILRIDPIKREDAGEYQCEIS 183
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 29.3 bits (66), Expect = 0.24
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 10/57 (17%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
VSW+ + R V +DG+ L + +D G Y C
Sbjct: 371 SVSWITPNGTVMTHG-----AYKVRIAV-LSDGT----LNFTNVTVQDTGMYTCMVS 417
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 28.2 bits (63), Expect = 0.26
Identities = 7/49 (14%), Positives = 11/49 (22%), Gaps = 4/49 (8%)
Query: 57 TNDARFQVIHTDGSDDWN---LQIKFLQKRDNGTYECQAQ-PYTTTSHS 101
+ LQ+ +NG Y A+ Y
Sbjct: 43 NESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ 91
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain
C2; IG domain, structural protein; NMR {Homo sapiens}
SCOP: b.1.1.4
Length = 104
Score = 28.1 bits (63), Expect = 0.31
Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 1/36 (2%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+ + G L I D+ Y+C
Sbjct: 57 QMSGSKYIFESIG-AKRTLTISQCSLADDAAYQCVV 91
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 28.1 bits (63), Expect = 0.32
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTT 98
+ +RFQ G + L ++ D G + T+
Sbjct: 51 GSSSRFQATR-QG-RKYILVVREAAPSDAGEVVFSVRGLTSK 90
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 28.9 bits (65), Expect = 0.33
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 10/56 (17%)
Query: 38 VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
V W+ +L+ + R V DG+ L + D G Y C
Sbjct: 382 VKWLLPNG-TVLSHA----SRHPRISV-LNDGT----LNFSHVLLSDTGVYTCMVT 427
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 28.3 bits (63), Expect = 0.35
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 13/76 (17%)
Query: 29 TVRDIVKVRVSWVRRRDWHILTSGVLTYTNDA------------RFQVIHTDGSD-DWNL 75
+ D + + W+ + V+ + R D D ++
Sbjct: 32 SPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASI 91
Query: 76 QIKFLQKRDNGTYECQ 91
+ LQ D GTY+C+
Sbjct: 92 NVTNLQLSDIGTYQCK 107
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 28.5 bits (63), Expect = 0.35
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 9/71 (12%)
Query: 32 DIVKVRVSWVRRRD---WHILTSGVLTYTN-DARFQVIHTDGSD-----DWNLQIKFLQK 82
+ + WV ++ G A ++ + D L+I +
Sbjct: 33 SAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTA 92
Query: 83 RDNGTYECQAQ 93
D+G Y C Q
Sbjct: 93 SDSGKYLCYFQ 103
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.36
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 13/49 (26%)
Query: 30 VRDIVKVRVSW---VRRRDWHIL------TSGV--LTYTN-DAR-FQVI 65
V I+++ V W + + HIL SG+ LT+ N D +VI
Sbjct: 480 VDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVI 528
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 27.7 bits (62), Expect = 0.36
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 68 DGSDDWNLQIKFLQKRDNGTYECQA 92
+ ++ GTY C
Sbjct: 45 THETKKLYMVPYVDLEHQGTYWCHV 69
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 28.1 bits (63), Expect = 0.36
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
++ + +G L ++ L+ +D+G Y C
Sbjct: 49 RPGDKYSLRQ-EG-AMLELVVRNLRPQDSGRYSCSF 82
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 27.7 bits (62), Expect = 0.39
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 54 LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTT 98
+ +R++ I +G L I+ K D Y ++
Sbjct: 47 IIPGPKSRYR-IRVEG-KKHILIIEGATKADAAEYSVMTTGGQSS 89
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 28.1 bits (63), Expect = 0.40
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+ R + DG LQI+ L D G Y C
Sbjct: 59 RDGDRHSLRQ-DG-ARCELQIRGLVAEDAGEYLCMC 92
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 28.4 bits (63), Expect = 0.40
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 59 DARFQVIHTDGSD-DWNLQIKFLQKRDNGTYECQA 92
++ ++ + L + K + G Y C
Sbjct: 75 NSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSV 109
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 28.5 bits (63), Expect = 0.41
Identities = 9/75 (12%), Positives = 24/75 (32%), Gaps = 7/75 (9%)
Query: 24 SYSDKTVRDIVKVRVSWVRR-----RDWHILTSGVLTYT--NDARFQVIHTDGSDDWNLQ 76
+ +I + ++W + ++ + S D +L+
Sbjct: 26 NIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLR 85
Query: 77 IKFLQKRDNGTYECQ 91
+ +Q + G Y C+
Sbjct: 86 LPGIQLEEAGEYRCE 100
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 27.6 bits (62), Expect = 0.41
Identities = 8/36 (22%), Positives = 10/36 (27%), Gaps = 2/36 (5%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+ I DG L + Q G QA
Sbjct: 46 AASPDCE-IIEDG-KKHILILHNCQLGMTGEVSFQA 79
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 27.6 bits (62), Expect = 0.43
Identities = 5/36 (13%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
R + + L I+ + D+ + +A
Sbjct: 47 ERSDRIY-WYWPEDNVCELVIRDVTGEDSASIMVKA 81
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 27.7 bits (62), Expect = 0.45
Identities = 10/43 (23%), Positives = 12/43 (27%), Gaps = 2/43 (4%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTS 99
R +V+ G L I D G Y Y T
Sbjct: 47 QESDRLKVVQ-KG-RIHKLVIANALTEDEGDYVFAPDAYNVTL 87
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 28.0 bits (62), Expect = 0.45
Identities = 7/35 (20%), Positives = 10/35 (28%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ 91
+ D L + L D G Y C+
Sbjct: 77 SAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCE 111
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 27.9 bits (62), Expect = 0.48
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 37 RVSWVRRRDWH-----ILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC 90
R W R+ I + G ++ R + + + + + I L + D+G Y+C
Sbjct: 34 RKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKC 92
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 27.6 bits (61), Expect = 0.51
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 6/74 (8%)
Query: 23 FSYSDKTVRDIVKVRVSWVRRRDWH---ILTSGVLTYTNDARFQVIHTDGSDDWNLQIKF 79
F+ S + V+W R + A L I+
Sbjct: 31 FNASQ---GRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRD 87
Query: 80 LQKRDNGTYECQAQ 93
++ D Y C+ +
Sbjct: 88 VRGHDASIYVCRVE 101
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 28.1 bits (63), Expect = 0.54
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 53 VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+++ ++ R V DG+ L++++ Q +DNGTY C A
Sbjct: 426 LVSAKSNGRLTV-FPDGT----LEVRYAQVQDNGTYLCIAA 461
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 27.4 bits (61), Expect = 0.55
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTT 98
+ DG L + + +D+G +EC+ + +
Sbjct: 51 EESELLV-VKMDG-RKHRLILPEAKVQDSGEFECRTEGVSAF 90
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 28.4 bits (62), Expect = 0.55
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 75 LQIKFLQKRDNGTYECQAQ 93
L I+ L + G Y C+AQ
Sbjct: 554 LFIENLTAQQYGHYFCEAQ 572
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 27.3 bits (61), Expect = 0.56
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+ R+ + DG LQI L D G Y C
Sbjct: 48 RDGGRYS-LKQDG-TRCELQIHDLSVADAGEYSCMC 81
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR,
VEGF receptor, cancer, immune system-transfer complex;
HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 27.4 bits (60), Expect = 0.62
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 29 TVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY 88
T R + V + + L D + Q L I + + D G Y
Sbjct: 31 TARTELNVGIDFNWEYPSSKHQHKKLV-NRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY 89
Query: 89 ECQAQ 93
C A
Sbjct: 90 TCAAS 94
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens}
SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 27.6 bits (61), Expect = 0.62
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 67 TDGSDDWNLQIKFLQKRDNGTYECQA 92
+ L++ +NG Y A
Sbjct: 57 NETVRHGCLRLNQPTHVNNGNYTLLA 82
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 27.8 bits (61), Expect = 0.64
Identities = 13/60 (21%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Query: 34 VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
V + +W H V D + Q L I + + D G Y C A
Sbjct: 135 VGIDFNWEYPSSKHQHKKLV---NRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS 191
Score = 26.3 bits (57), Expect = 2.1
Identities = 8/58 (13%), Positives = 14/58 (24%), Gaps = 11/58 (18%)
Query: 36 VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ VS R + D++ I G C+A+
Sbjct: 38 LNVSLCARYPEKRFVPDGNRISWDSK-----------KGFTIPSYMISYAGMVFCEAK 84
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 27.9 bits (61), Expect = 0.65
Identities = 10/66 (15%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 36 VRVSWVRRRDWHILTSGVLTYTNDA--RFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
++ +W +R+ + + + + +A F + + D +L + D + C A+
Sbjct: 224 IKYNWYLQREGQLSPTLIGSEVGEALEGFSI-----TPDGHLFKESATYDDTAKFWCVAK 278
Query: 94 PYTTTS 99
Y
Sbjct: 279 LYQQIE 284
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 27.3 bits (61), Expect = 0.68
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
D+ + + + L I+ ++K D G Y CQA
Sbjct: 52 VEDSGIVLKDGNRN----LTIRRVRKEDEGLYTCQA 83
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 27.3 bits (61), Expect = 0.69
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+ Q + L I L+K D+ TY C
Sbjct: 49 RASGKHQPSQEGLT--LRLTISALEKADSDTYTCDI 82
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 27.3 bits (61), Expect = 0.72
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
++ + +G L I+ +D G Y C+
Sbjct: 49 RKSQKYD-VVCEG-TMAMLVIRGASLKDAGEYTCEV 82
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 27.5 bits (61), Expect = 0.73
Identities = 7/33 (21%), Positives = 9/33 (27%)
Query: 70 SDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQ 102
D I +G Y C T S+
Sbjct: 131 HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSK 163
Score = 24.4 bits (53), Expect = 8.0
Identities = 5/20 (25%), Positives = 6/20 (30%)
Query: 74 NLQIKFLQKRDNGTYECQAQ 93
D+G Y CQ
Sbjct: 52 PSYRFKANNNDSGEYTCQTG 71
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 27.2 bits (60), Expect = 0.73
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Query: 37 RVSWVRRRDWH-----ILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC 90
W R W + TSG R + + + + ++ L K D TY C
Sbjct: 34 LKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDADTYWC 92
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 242
Score = 27.6 bits (62), Expect = 0.74
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 10/74 (13%)
Query: 38 VSWVRRR-----DW--HILTSGVLTYTNDA---RFQVIHTDGSDDWNLQIKFLQKRDNGT 87
V W R R + I G + + +F+V + L I ++K+D T
Sbjct: 35 VYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQDIAT 94
Query: 88 YECQAQPYTTTSHS 101
Y C
Sbjct: 95 YYCALWEAQQELGK 108
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 27.0 bits (59), Expect = 0.83
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 75 LQIKFLQKRDNGTYECQAQPYTTTSHSQNA 104
L+++ ++ G Y+C + +S+S A
Sbjct: 78 LRLRNVEFTSEGXYQCVISNHFGSSYSVXA 107
>2pnd_A V-SET and immunoglobulin domain containing 4; complement
receptor, IG-like domain, immune system; 1.00A {Mus
musculus} PDB: 2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 27.2 bits (60), Expect = 0.88
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 31 RDIVKVRVSWVRRRD----WHILTSGVLTYTNDARFQ---VIHTDGSDDWNLQIKFLQKR 83
R +V V W+ R L + A+++ + D +LQI LQ
Sbjct: 29 RGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGDVSLQINTLQMD 88
Query: 84 DNGTYECQ 91
D Y C+
Sbjct: 89 DRNHYTCE 96
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 27.3 bits (60), Expect = 1.00
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 60 ARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQNAPGLG 108
+F V DGS + L+I+ D+ Y C + + + PG
Sbjct: 64 DQFSVERPDGSY-FTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTR 111
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 26.8 bits (59), Expect = 1.1
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 72 DWNLQIKFLQKRDNGTYECQ 91
L+I+ ++ D G Y C
Sbjct: 84 KVALRIQNVRFSDEGGYTCF 103
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus}
SCOP: b.1.1.1 b.1.1.2
Length = 185
Score = 27.1 bits (60), Expect = 1.2
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 59 DARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTT 98
D RF + ++L I Q D+ TY C A
Sbjct: 58 DGRFTIFFNKREKKFSLHIADSQPGDSATYFCAASDNRIF 97
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 26.7 bits (59), Expect = 1.2
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 74 NLQIKFLQKRDNGTYECQAQPYTTTSHSQNA 104
+ + D G Y C A+ Y + S +A
Sbjct: 73 RIVHGRKSRPDEGVYVCVARNYLGEAVSHDA 103
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 26.9 bits (59), Expect = 1.3
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 61 RFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQNAPGL 107
RF + +GS L+I+ ++ D+ Y C T + L
Sbjct: 89 RFFAVRPEGSV-STLKIQRTERGDSAVYLCATSALGDTQYFGPGTRL 134
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 26.4 bits (58), Expect = 1.3
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 61 RFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQN 103
R + +G+ L I ++K D GTY + T
Sbjct: 65 RVYLEENNGA----LHISNVRKEDKGTYYMRVLRETENELKIT 103
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 26.9 bits (59), Expect = 1.3
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 60 ARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSH 100
RF S +L+I+ + D+ Y C + +
Sbjct: 89 KRFSAECPSNSP-CSLEIQSSEAGDSALYLCASSLNWSQDT 128
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 26.2 bits (58), Expect = 1.6
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 70 SDDWNLQIKFLQKRDNGTYECQA 92
L + + +D GTY C A
Sbjct: 54 PPSPVLILPEIGPQDQGTYSCVA 76
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 26.6 bits (58), Expect = 1.7
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 74 NLQIKFLQKRDNGTYECQAQ 93
+ + + GTY C+A+
Sbjct: 229 IGESVTVTRDLEGTYLCRAR 248
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen,
beta-turn, immune system; HET: NLE; NMR {Rattus
norvegicus} SCOP: b.1.1.1 b.1.1.1
Length = 257
Score = 26.6 bits (59), Expect = 1.8
Identities = 21/78 (26%), Positives = 27/78 (34%), Gaps = 11/78 (14%)
Query: 38 VSWVRRR-----DW--HILTSGVLTYTND--ARFQVIHTDGSD-DWNLQIKFLQKRDNGT 87
VSWVR +W + G Y + +R I D S L++ LQ D GT
Sbjct: 34 VSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRL-SISRDTSKNQVFLKMNSLQTDDTGT 92
Query: 88 YECQAQPYTTTSHSQNAP 105
Y C Y
Sbjct: 93 YYCTRDLYGGYPLGFWYF 110
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 26.4 bits (57), Expect = 1.9
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 63 QVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTS 99
++I D + K G Y+C+ +
Sbjct: 39 KMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKP 75
Score = 24.9 bits (53), Expect = 6.8
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 65 IHTDGSDDWNLQIK-FLQKRDNGTYECQAQ 93
GSD+ +L +K F + +G Y C +
Sbjct: 158 DKNIGSDEDHLSLKEFSELEQSGYYVCYPR 187
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 25.8 bits (57), Expect = 2.0
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 75 LQIKFLQKRDNGTYECQA 92
L + + D G Y+
Sbjct: 69 LIFSDVVQEDRGRYQVIT 86
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 26.5 bits (58), Expect = 2.3
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 66 HTDGSDDWNLQIKFLQKRDNGTYECQAQ----PYTTTSHS 101
H DG N I + + GTY C PY ++ S
Sbjct: 55 HHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPS 94
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 26.4 bits (59), Expect = 2.7
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 1 MVAAPGGILTAFGQISTGFLAVF-SYS 26
+++ GG L I+ G +A F YS
Sbjct: 277 LISGFGGWLALKDIITVGTIATFIGYS 303
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 26.0 bits (57), Expect = 2.9
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 66 HTDGSDDWNLQIKFLQKRDNGTYECQAQ----PYTTTSHS 101
H DG N I + + GTY C PY ++ S
Sbjct: 56 HHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPS 95
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 25.8 bits (57), Expect = 2.9
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 9/49 (18%)
Query: 54 LTYTNDARFQVIHTDGS---DDWNLQIKFLQKRDNGTYECQAQPYTTTS 99
L R + + L I+ +Q DNG Y C+ + +
Sbjct: 61 LVSEEG-RIV-----QTQNGSVYTLTIQNIQYEDNGIYFCKQKCDSANH 103
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 26.0 bits (57), Expect = 3.0
Identities = 8/50 (16%), Positives = 14/50 (28%), Gaps = 4/50 (8%)
Query: 56 YTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ----PYTTTSHS 101
Y D I + + + G Y C+ P ++ S
Sbjct: 57 YKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPS 106
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 25.5 bits (56), Expect = 3.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 69 GSDDWNLQIKFLQKRDNGTYECQAQPYT 96
GS ++L+I L+ D+GTY+CQA
Sbjct: 62 GSKSFSLRISDLRVEDSGTYKCQAFYVF 89
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 25.6 bits (56), Expect = 3.5
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 8/61 (13%)
Query: 38 VSWVRRR-----DWHILTSGVLTYTND--ARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC 90
+ W R+ + G+ +++ + L K L D+G Y C
Sbjct: 33 LYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLS-ASRPQDRQFILSSKKLLLSDSGFYLC 91
Query: 91 Q 91
Sbjct: 92 A 92
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 26.0 bits (57), Expect = 3.7
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
++ + D+ L I ++ D G Y +A
Sbjct: 524 KQSVKYMKRYNGN--DYGLTINRVKGDDKGEYTVRA 557
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 25.6 bits (55), Expect = 3.8
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 65 IHTDGSDDWNLQIKFLQKRDNGTYECQ 91
L++ + +D G Y CQ
Sbjct: 84 ASVANLAAPTLRLTHVHPQDGGRYWCQ 110
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like
receptor, structural genomics, PSI, protein structure
initiative; 2.10A {Mus musculus}
Length = 113
Score = 25.1 bits (55), Expect = 4.0
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Query: 37 RVSWVRRRDWHILTSGVLTYTNDA-----RFQVIHTDGSDDWNLQIKFLQKRDNGTYEC 90
+ W + + V T ++ R + + + ++ L+ D G Y C
Sbjct: 33 KKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWC 91
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human
cytomegalovirus, PP65, T cell receptor (TCR), immune
response, public response; 2.80A {Homo sapiens}
Length = 199
Score = 25.3 bits (55), Expect = 4.2
Identities = 9/38 (23%), Positives = 10/38 (26%)
Query: 59 DARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYT 96
R L IK Q D+ TY C
Sbjct: 58 KGRISATLNTKEGYSYLYIKGSQPEDSATYLCARNTGN 95
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 4.3
Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 6/87 (6%)
Query: 5 PGGILTAFGQISTG--FLAVFSYSDKTVRDIVKVRVSWV----RRRDWHILTSGVLTYTN 58
P + G + +G ++A+ V+ + ++ W+ +L
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 59 DARFQVIHTDGSDDWNLQIKFLQKRDN 85
+D S + L+I +Q
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELR 235
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 25.6 bits (56), Expect = 4.5
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 38 VSWVRRR-----DW--HILTSGVLTYTND---ARFQVIHTDGSDDWNLQIKFLQKRDNGT 87
+ W R+ TY +F + H + L + D+
Sbjct: 56 MFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTL-STLTVTSAHPEDSSF 114
Query: 88 YECQAQPYTTTSHSQNAPGLG 108
Y C A+ T+ ++++ G G
Sbjct: 115 YICSARDLTSGANNEQFFGPG 135
>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like
beta-sandwich, stalk region, immune system; 2.80A
{Ictalurus punctatus}
Length = 137
Score = 24.9 bits (55), Expect = 4.6
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 12/58 (20%)
Query: 43 RRDWHILTSGVLTYTNDARFQVIHTDGSD-DWNLQIKFLQKRDNGTYECQ---AQPYT 96
+ D+RF +D ++L I ++ D G Y C
Sbjct: 53 NSGYKFAEGFK-----DSRFS---MTVNDQKFDLNIIGAREDDGGEYFCGEVEGIIIK 102
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed
death-1, costimulatory, immune system; 2.10A {Homo
sapiens}
Length = 129
Score = 25.0 bits (55), Expect = 4.6
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 49 LTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
G D RF+V D+++ + ++ D+GTY C A
Sbjct: 56 SQPGQ-----DCRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAI 95
>1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET:
DDQ; 2.99A {Equus caballus}
Length = 452
Score = 25.4 bits (55), Expect = 4.7
Identities = 9/14 (64%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
Query: 58 NDARF-QVIHTDGS 70
+DA+F VIHTD S
Sbjct: 196 SDAQFVDVIHTDAS 209
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 25.4 bits (55), Expect = 4.8
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 59 DARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSH 100
R +V +L I + D +Y C + T
Sbjct: 58 SGRLRVTLDTSKKSSSLLITASRAADTASYFCATDTTSGTYK 99
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system;
2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Length = 112
Score = 24.9 bits (55), Expect = 5.0
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 59 DARFQVIHTDGSD-DWNLQIKFLQKRDNGTYECQAQPYTTTS 99
F+ + ++LQ +Q+ D+ Y C
Sbjct: 58 SRGFEA-TYNKEATSFHLQKASVQESDSAVYYCALSENYGNE 98
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 24.9 bits (54), Expect = 5.2
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 75 LQIKFLQKRDNGTYECQA 92
L + K + G Y C
Sbjct: 87 LTLNKFSKENEGYYFCSV 104
>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein,
cytochrome C oxidase, high- resolution structure,
immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB:
1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A
1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A
1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...
Length = 120
Score = 24.8 bits (55), Expect = 5.3
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 72 DWNLQIKFLQKRDNGTYECQAQPYTT 97
++L+I L D G+Y CQ Y T
Sbjct: 70 QFSLKINSLLPEDFGSYYCQ-HHYGT 94
>1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid
degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP:
b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A*
Length = 452
Score = 25.4 bits (55), Expect = 5.3
Identities = 8/14 (57%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Query: 58 NDARF-QVIHTDGS 70
+DA F VIHTD +
Sbjct: 196 SDAMFVDVIHTDSA 209
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 25.2 bits (55), Expect = 5.7
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 59 DARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTS 99
R+ V + L I LQ D+ Y C T +
Sbjct: 195 SGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGESLTRA 235
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 25.2 bits (55), Expect = 6.0
Identities = 6/37 (16%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 66 HTDGSDDWNLQIKFLQKRDNGTYECQAQ-PYTTTSHS 101
+ + I + + G Y C + P + S
Sbjct: 51 PLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPS 87
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 24.8 bits (54), Expect = 6.1
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 68 DGSDDWNLQIKFLQKRDNGTYECQAQ-PYTTTSHS 101
+ + I + R G Y C + + S
Sbjct: 52 ERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPS 86
>1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation;
HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2
c.69.1.19 PDB: 2ppl_A
Length = 450
Score = 25.0 bits (54), Expect = 6.1
Identities = 8/14 (57%), Positives = 9/14 (64%), Gaps = 1/14 (7%)
Query: 58 NDARF-QVIHTDGS 70
DA F VIHTD +
Sbjct: 195 TDADFVDVIHTDAA 208
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 24.8 bits (54), Expect = 6.3
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 68 DGSDDWNLQIKFLQKRDNGTYECQAQ-PYTTTSHS 101
+ + I + + G Y C P + S
Sbjct: 53 EPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPS 87
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 24.6 bits (54), Expect = 6.5
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 54 LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYT 96
+ + R+ GS ++L+I L D GTY C
Sbjct: 47 ESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVAG 89
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2,
immune system; 2.10A {Orectolobus maculatus}
Length = 108
Score = 24.6 bits (54), Expect = 6.5
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 61 RFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQN 103
R+ +GS+ +L I+ L+ D+GTY+C+A +
Sbjct: 54 RYSETVDEGSNSASLTIRDLRVEDSGTYKCKAYRRCAFNTGVG 96
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system;
2.21A {Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 24.6 bits (54), Expect = 6.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 75 LQIKFLQKRDNGTYECQAQPYTTTS 99
L+I L+ D+GTY+CQA +
Sbjct: 68 LRISDLRVEDSGTYKCQADYSPSCY 92
>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold,
toxin-immune system complex; 2.95A {Rattus norvegicus}
Length = 125
Score = 24.5 bits (54), Expect = 6.8
Identities = 4/40 (10%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 61 RFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSH 100
++ + ++L ++ Y C T +
Sbjct: 68 GYKASRPSQEN-FSLILELATPSQTSVYFCA-SGGGGTLY 105
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 24.9 bits (54), Expect = 6.9
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 75 LQIKFLQKRDNGTYECQAQPYTTTSHSQN 103
L I+ Q D+GTY C A + + +
Sbjct: 73 LHIRDAQLEDSGTYFCAADTWHISEGYEL 101
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 24.9 bits (54), Expect = 7.0
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 61 RFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ 91
RF V D + + L+ D+ Y C
Sbjct: 64 RFSVQQFDDYH-SEMNMSALELEDSAMYFCA 93
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 25.2 bits (54), Expect = 7.0
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 76 QIKFLQKRDNGTYECQAQ 93
+ + + GTY C+A+
Sbjct: 416 ESVTVTRDLEGTYLCRAR 433
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 24.2 bits (53), Expect = 7.7
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 66 HTDGSDDWNLQIKFLQKRDNGTYECQA 92
T + L I+ D+GTY C A
Sbjct: 57 STCEAGVAELHIQDALPEDHGTYTCLA 83
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin;
immune system/receptor, immune system/receptor/complex,
TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A
2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D
3qeq_D
Length = 215
Score = 24.6 bits (53), Expect = 7.8
Identities = 10/37 (27%), Positives = 11/37 (29%)
Query: 59 DARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY 95
R D D +L I Q D G Y C
Sbjct: 58 LKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGS 94
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 24.1 bits (52), Expect = 8.3
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 37 RVSWVRRRDWH-----ILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC 90
W R + T G N R + + + + + ++ L + D GTY C
Sbjct: 28 NKYWCRPPQIFLCDKIVETKGSAGKRNG-RVSIRDSPANLSFTVTLENLTEEDAGTYWC 85
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 24.7 bits (53), Expect = 8.5
Identities = 7/38 (18%), Positives = 10/38 (26%)
Query: 59 DARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYT 96
+ R+ + L I D TY C
Sbjct: 59 NGRYSATLDKDAKHSTLHITATLLDDTATYFCVVGDRG 96
>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus
musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A
1d9k_A*
Length = 110
Score = 24.1 bits (53), Expect = 8.5
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 59 DARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
D RF + +L I Q D+ TY C A
Sbjct: 57 DGRFTIFFNKREKKLSLHIADSQPGDSATYFCAA 90
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 24.5 bits (53), Expect = 8.5
Identities = 7/37 (18%), Positives = 11/37 (29%)
Query: 68 DGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQNA 104
+ + I + R G Y C + S N
Sbjct: 55 ERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNL 91
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein,
T cell receptor delta, immune system; HET: NAG MAN FUC;
3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 230
Score = 24.5 bits (54), Expect = 8.6
Identities = 10/70 (14%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 38 VSWVRRR-----DW--HILTSGVLTYTNDARFQVIHTDGSDDWN---LQIKFLQKRDNGT 87
+ W R++ ++ ++L + + D ++ + + + L I L++ D
Sbjct: 35 IHWYRQKPNQGLEFLLYVLATPTHIF-LDKEYKKMEASKNPSASTSILTIYSLEEEDEAI 93
Query: 88 YECQAQPYTT 97
Y C ++
Sbjct: 94 YYCSYGEGSS 103
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 24.8 bits (54), Expect = 8.7
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 38 VSWVRRR-----DWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
V+W ++ I + RF G+ L I L+ D Y C +
Sbjct: 32 VNWYQQLPGMAPKLLIYRDAMRPSGVPTRFS-GSKSGTSAS-LAISGLEAEDESDYYCAS 89
Query: 93 QPYTTTSH 100
+ S+
Sbjct: 90 WNSSDNSY 97
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 24.5 bits (53), Expect = 8.7
Identities = 5/53 (9%), Positives = 14/53 (26%), Gaps = 1/53 (1%)
Query: 61 RFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQNAPGLGDLLMH 113
++ ++L ++ Y C + + Q L +
Sbjct: 61 GYKASRPSQEQ-FSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVL 112
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N
2i26_N
Length = 121
Score = 24.2 bits (53), Expect = 8.7
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 61 RFQVIHTD-GSDDWNLQIKFLQKRDNGTYECQAQPY 95
R+ V + GS ++L+I L +D+GTY C+ +
Sbjct: 54 RY-VETVNRGSKSFSLRINDLTVKDSGTYRCKPESR 88
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 24.6 bits (53), Expect = 9.3
Identities = 10/44 (22%), Positives = 15/44 (34%)
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSH 100
+ RF S +L I+ Q D+ Y C A +
Sbjct: 57 KKEGRFTAHLNKASLHVSLHIRDSQPSDSALYFCAASEQNNYAQ 100
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 24.1 bits (51), Expect = 9.4
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 75 LQIKFLQKRDNGTYECQA--QPYTTTSHS 101
L K + DNG+Y C SHS
Sbjct: 81 LHFKPIHLSDNGSYSCSTNFNSQVINSHS 109
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 24.1 bits (52), Expect = 9.6
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 3/70 (4%)
Query: 37 RVSWVRRRDW---HILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ W R +++S V R + G +++ LQ+ D G Y C
Sbjct: 29 QKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDLGGGLLQVEMVTLQEEDAGEYGCMVD 88
Query: 94 PYTTTSHSQN 103
Sbjct: 89 GARGPQILHR 98
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region;
superagonist peptide T-cell vaccines, transmembrane,
immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D
2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D*
3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 24.6 bits (53), Expect = 9.9
Identities = 11/41 (26%), Positives = 14/41 (34%)
Query: 59 DARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTS 99
R S L I Q D+ TY C +P + S
Sbjct: 58 SGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGGS 98
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.421
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,730,853
Number of extensions: 89475
Number of successful extensions: 585
Number of sequences better than 10.0: 1
Number of HSP's gapped: 580
Number of HSP's successfully gapped: 398
Length of query: 113
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 36
Effective length of database: 4,551,876
Effective search space: 163867536
Effective search space used: 163867536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)