RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14080
(113 letters)
>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 41.8 bits (97), Expect = 1e-06
Identities = 12/65 (18%), Positives = 23/65 (35%)
Query: 36 VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY 95
R+ W + + + D +++ ++ I L+ D GTYEC Y
Sbjct: 28 TRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKY 87
Query: 96 TTTSH 100
+
Sbjct: 88 EKDAF 92
>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 110
Score = 40.2 bits (93), Expect = 4e-06
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 59 DARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSH 100
+++ + SD W L++ LQ +D G Y+C T
Sbjct: 55 HSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGM 96
>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 126
Score = 32.3 bits (72), Expect = 0.004
Identities = 9/71 (12%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
Query: 24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSD-DWNLQIKFLQK 82
+ + V V R +++ + L+I+ ++
Sbjct: 31 NATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF 90
Query: 83 RDNGTYECQAQ 93
D G Y C +
Sbjct: 91 SDEGGYTCFFR 101
>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}
Length = 109
Score = 31.9 bits (71), Expect = 0.006
Identities = 10/59 (16%), Positives = 20/59 (33%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
++ ++ L Y + ++T + L I+ + D G Y C A
Sbjct: 36 HIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAG 94
>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 97
Score = 31.3 bits (70), Expect = 0.007
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
Query: 24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTD-GSDDWNLQIKFLQK 82
+ S K + ++ + R + ++ L IK L+
Sbjct: 17 TASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKI 76
Query: 83 RDNGTYECQAQ 93
D+ TY C+ +
Sbjct: 77 EDSDTYICEVE 87
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 89
Score = 30.1 bits (67), Expect = 0.021
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 72 DWNLQIKFLQKRDNGTYECQAQ 93
D L IK ++ D G Y C+A
Sbjct: 53 DSGLVIKGVKNGDKGYYGCRAT 74
>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 29.5 bits (65), Expect = 0.028
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 55 TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQNA 104
N + + ++ L +K +++ D G Y CQ + T SQ
Sbjct: 36 VVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPV 85
>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 30.0 bits (66), Expect = 0.033
Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 2/54 (3%)
Query: 40 WVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ L + R +V T ++ +K D G Y +
Sbjct: 63 EDTGDSDEWVFDKKLLCETEGRVRVETTKDR--SIFTVEGAEKEDEGVYTVTVK 114
>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 29.6 bits (65), Expect = 0.034
Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 2/80 (2%)
Query: 14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDW 73
+ G F K + K + W + + + + F+ + +
Sbjct: 11 TVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYT--F 68
Query: 74 NLQIKFLQKRDNGTYECQAQ 93
+QI + G Y C+
Sbjct: 69 EMQIIKAKDNFAGNYRCEVT 88
>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding
Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 121
Score = 29.8 bits (66), Expect = 0.035
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 61 RFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
RF ++ + + L I+ + D G Y + +
Sbjct: 71 RFHLLGDPQTKNCTLSIRDARMSDAGRYFFRME 103
>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 28.7 bits (63), Expect = 0.054
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 61 RFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSH 100
F+ + +L I L D YE ++ T T
Sbjct: 48 SFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMK 87
>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 119
Score = 28.7 bits (63), Expect = 0.084
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 62 FQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
Q + D ++ I L DNGT+ C +
Sbjct: 70 IQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVK 101
>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId:
9606]}
Length = 101
Score = 28.7 bits (63), Expect = 0.086
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 73 WNLQIKFLQKRDNGTYECQAQ 93
L I ++ G Y +
Sbjct: 56 SKLTILAARQEHCGCYTLLVE 76
>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 27.8 bits (61), Expect = 0.13
Identities = 5/45 (11%), Positives = 11/45 (24%)
Query: 56 YTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSH 100
+ + L I+ K D Y +++
Sbjct: 40 IIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAK 84
>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 112
Score = 27.4 bits (60), Expect = 0.24
Identities = 7/61 (11%), Positives = 18/61 (29%)
Query: 40 WVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTS 99
R + + +G+ + ++D+ L++ Y C + T
Sbjct: 39 MGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVYFCASSYVGNTG 98
Query: 100 H 100
Sbjct: 99 E 99
>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a,
CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 107
Score = 27.0 bits (59), Expect = 0.31
Identities = 5/63 (7%), Positives = 18/63 (28%), Gaps = 6/63 (9%)
Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSD------DWNLQIKFLQKRDNGTY 88
+ + + + + + ++ S + +L + + +D G Y
Sbjct: 27 ALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVY 86
Query: 89 ECQ 91
Sbjct: 87 TLD 89
>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 26.8 bits (58), Expect = 0.32
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 71 DDWNLQIKFLQKRDNGTYECQAQPYTTTS 99
L ++ +Q D+G Y C +
Sbjct: 58 MGRRLLLRSVQLHDSGNYSCYRAGRPAGT 86
>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 118
Score = 26.7 bits (58), Expect = 0.37
Identities = 11/54 (20%), Positives = 22/54 (40%)
Query: 40 WVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
R+ H ++ R +++ NL +K L+ D+GTY + +
Sbjct: 46 GKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFE 99
>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 26.6 bits (58), Expect = 0.46
Identities = 9/92 (9%), Positives = 25/92 (27%), Gaps = 3/92 (3%)
Query: 23 FSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDA---RFQVIHTDGSDDWNLQIKF 79
+SY+ + + + ++ F G++ ++
Sbjct: 24 YSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQN 83
Query: 80 LQKRDNGTYECQAQPYTTTSHSQNAPGLGDLL 111
L Y C+ + + N G ++
Sbjct: 84 LYVNQTDIYFCKIEVMYPPPYLDNEKSNGTII 115
>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 92
Score = 26.4 bits (57), Expect = 0.48
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 73 WNLQIKFLQKRDNGTYECQAQ 93
LQI+ ++K D GTY C+ +
Sbjct: 56 NYLQIRGIKKTDEGTYRCEGR 76
>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 26.2 bits (56), Expect = 0.55
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 46 WHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ ++ F + +L I + D+G Y+CQ Q
Sbjct: 21 LTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQ 68
>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C,
different domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 26.2 bits (56), Expect = 0.64
Identities = 11/80 (13%), Positives = 22/80 (27%), Gaps = 2/80 (2%)
Query: 14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDW 73
+++ G FS + V W + + + + + +
Sbjct: 15 EVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYL--F 72
Query: 74 NLQIKFLQKRDNGTYECQAQ 93
L I Q G Y C+
Sbjct: 73 ELHITDAQPAFTGGYRCEVS 92
>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis
elegans) [TaxId: 6239]}
Length = 97
Score = 26.0 bits (56), Expect = 0.67
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 62 FQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ + +D+ L I ++ D G Y +A+
Sbjct: 46 VKYMKRYNGNDYGLTINRVKGDDKGEYTVRAK 77
>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR
{Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 26.0 bits (56), Expect = 0.88
Identities = 11/91 (12%), Positives = 28/91 (30%), Gaps = 7/91 (7%)
Query: 1 MVAAPGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDA 60
+ + G ++ + + R I + G ++
Sbjct: 9 VNSVEGNSVSITCYYPPTSVNRHTR-------KYWCRQGARGGCITLISSEGYVSSKYAG 61
Query: 61 RFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ 91
R + + + + + I L + D+G Y+C
Sbjct: 62 RANLTNFPENGTFVVNIAQLSQDDSGRYKCG 92
>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 98
Score = 25.4 bits (55), Expect = 1.0
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 65 IHTDGSDDWNLQIKFLQKRDNGTYECQA 92
I +G L+IK L + D+GTY
Sbjct: 56 ILANGD----LKIKNLTRDDSGTYNVTV 79
>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 110
Score = 25.7 bits (55), Expect = 1.1
Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 2/54 (3%)
Query: 40 WVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ +LT+ S D + D+G Y CQAQ
Sbjct: 36 SWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDL--IFDPVTAFDSGEYYCQAQ 87
>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 164
Score = 25.6 bits (56), Expect = 1.1
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 17/62 (27%)
Query: 38 VSWVRR-------RDWHILTSGVL----------TYTNDARFQVIHTDGSDDWNLQIKFL 80
+ W++ +D LT+GV + +++ I D D+W ++ L
Sbjct: 15 IIWLQTFKTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASNL 74
Query: 81 QK 82
+K
Sbjct: 75 KK 76
>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 89
Score = 25.2 bits (54), Expect = 1.3
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 73 WNLQIKFLQKRDNGTYECQAQ 93
L+ L D+G Y+C A+
Sbjct: 53 GELRFSKLVLEDSGMYQCVAE 73
>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car),
domain 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 25.3 bits (54), Expect = 1.4
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 61 RFQVIHTDGSD-DWNLQIKFLQKRDNGTYECQAQ 93
R D D ++ + LQ D GTY+C+ +
Sbjct: 75 RVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVK 108
>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}
Length = 97
Score = 24.8 bits (53), Expect = 1.6
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 65 IHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ + W+L ++ + D G Y C +
Sbjct: 54 GYKVRNQHWSLIMESVVPSDKGNYTCVVE 82
>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 122
Score = 25.0 bits (54), Expect = 2.0
Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 9/96 (9%)
Query: 1 MVAAPGGILT----AFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTY 56
M A G + G +S G +F S + V H +
Sbjct: 11 MDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMA----SSHNKITWDEKL 66
Query: 57 TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+ F + + + L + K + G Y C
Sbjct: 67 NSSKLFSAMRDTNNK-YVLTLNKFSKENEGYYFCSV 101
>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal
fragment {Mouse (Mus musculus) [TaxId: 10090]}
Length = 117
Score = 24.6 bits (53), Expect = 2.1
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 36 VRVSWVRRRDWHILTSGVLTYTND------ARFQVIHTDGSDDWNLQIKFLQKRDNGTYE 89
VRV+ +R+ + + T+T T NL I+ L+ D G Y
Sbjct: 32 VRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTGLYL 91
Query: 90 CQAQPYTTTSH 100
C+ + +
Sbjct: 92 CKVELMYPPPY 102
>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)
[TaxId: 9103]}
Length = 102
Score = 24.5 bits (52), Expect = 2.1
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 66 HTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
D + +L I + D+ Y C+A
Sbjct: 58 DYDEEGNCSLTISEVCGDDDAKYTCKAV 85
>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus
musculus), beta-chain [TaxId: 10090]}
Length = 110
Score = 24.6 bits (53), Expect = 2.3
Identities = 4/38 (10%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 60 ARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTT 97
++ ++L ++ Y C + T
Sbjct: 62 DGYEASRPSQEQ-FSLILESATPSQTSVYFCASGGGGT 98
>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor
TrkA, different domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 107
Score = 24.5 bits (52), Expect = 2.6
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 66 HTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ L++ +NG Y A
Sbjct: 56 ANETVRHGCLRLNQPTHVNNGNYTLLAA 83
>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein
phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 24.2 bits (51), Expect = 2.9
Identities = 8/39 (20%), Positives = 12/39 (30%)
Query: 66 HTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQNA 104
+ + + KRD G Y C + S A
Sbjct: 53 TSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYA 91
>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
modules [TaxId: 9606]}
Length = 91
Score = 24.0 bits (51), Expect = 3.6
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 73 WNLQIKFLQKRDNGTYECQAQ 93
+I +Q D G Y +
Sbjct: 55 STFEISSVQASDEGNYSVVVE 75
>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 94
Score = 23.9 bits (50), Expect = 4.0
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 73 WNLQIKFLQKRDNGTYECQAQPYTTTSHSQNA 104
+L Q D G Y+C A+ + S+
Sbjct: 58 GSLVFLRPQASDEGHYQCFAETPAGVASSRVI 89
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 91
Score = 23.6 bits (50), Expect = 4.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 75 LQIKFLQKRDNGTYECQAQ 93
L I+ + D GTYEC+A+
Sbjct: 57 LHIQNVDFEDEGTYECEAE 75
>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 100
Score = 23.7 bits (50), Expect = 4.5
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 55 TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
N+ H D L I+ + K D Y C A+
Sbjct: 45 PIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAE 83
>d2gtaa1 a.204.1.2 (A:1-98) Hypothetical protein YpjD {Bacillus
subtilis [TaxId: 1423]}
Length = 98
Score = 23.6 bits (51), Expect = 5.0
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 26 SDKTVRDIVKVRVSWVRRRDWH 47
SDKT++DI ++ +
Sbjct: 2 SDKTMKDIQAEVDRYIGQFKEG 23
>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 23.6 bits (50), Expect = 5.1
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 73 WNLQIKFLQKRDNGTYECQA 92
L I D+ Y+C
Sbjct: 62 RTLTISQCSLADDAAYQCVV 81
>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo
sapiens), alpha-chain [TaxId: 9606]}
Length = 96
Score = 23.2 bits (49), Expect = 5.6
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 5/66 (7%)
Query: 38 VSWVRRRD-----WHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
+ W R+ IL + R +V +L I + D +Y C
Sbjct: 24 LQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCAT 83
Query: 93 QPYTTT 98
+ T
Sbjct: 84 DTTSGT 89
>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable
domain, VL-kappa {Mouse (Mus musculus), cluster 1.1
[TaxId: 10090]}
Length = 113
Score = 23.1 bits (49), Expect = 7.6
Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 7/73 (9%)
Query: 24 SYSDKTVRDIVKVRVSWVRRRD-----WHILTSGVLTYTNDARFQVIHTDGSDDWNLQIK 78
S V + + W ++ I RF + D+ L+I
Sbjct: 25 RSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFS--GSGSGTDFTLKIS 82
Query: 79 FLQKRDNGTYECQ 91
++ D G Y C
Sbjct: 83 RVEAEDLGIYYCF 95
>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 22.9 bits (48), Expect = 8.1
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 37 RVSWVR-----RRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ 91
+ W + + +S T +RF + + + + + L++ D+G Y C+
Sbjct: 29 KKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCR 88
>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32)
{Human (Homo sapiens), III [TaxId: 9606]}
Length = 84
Score = 22.9 bits (48), Expect = 8.2
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 73 WNLQIKFLQKRDNGTYECQAQ 93
+ I D+G Y CQ
Sbjct: 52 SSYFIDAATVNDSGEYRCQTN 72
>d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation factor
(ABP-120) repeats {Dictyostelium discoideum [TaxId:
44689]}
Length = 108
Score = 23.0 bits (49), Expect = 8.6
Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 9/53 (16%)
Query: 57 TNDARFQVIHTDGSDDWNLQIK--------FLQKRDNGTYECQAQPYTTTSHS 101
+ + +V T G D + + I +GTY S
Sbjct: 18 AKNKKGEVK-TYGGDKFEVSITGPAEEITLDAIDNQDGTYTAAYSLVGNGRFS 69
>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
modules [TaxId: 9606]}
Length = 98
Score = 22.9 bits (48), Expect = 9.0
Identities = 4/28 (14%), Positives = 11/28 (39%)
Query: 66 HTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
+ + L I+ + D+ + +A
Sbjct: 54 YWPEDNVCELVIRDVTGEDSASIMVKAI 81
>d1y7pa1 c.23.1.7 (A:79-217) Hypothetical protein AF1403, C-terminal
domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 139
Score = 22.8 bits (49), Expect = 9.7
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 15 ISTGFLAVFSYSDKTVRDIVKVR 37
+ G LAV S+K D+ +V+
Sbjct: 115 VMAGTLAVMHISEKAKFDLDRVK 137
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.421
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 423,171
Number of extensions: 17133
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 61
Length of query: 113
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 42
Effective length of database: 1,432,766
Effective search space: 60176172
Effective search space used: 60176172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.5 bits)