Query psy14082
Match_columns 233
No_of_seqs 167 out of 1762
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 19:06:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330|consensus 100.0 1E-48 2.2E-53 321.4 20.0 220 1-227 91-431 (476)
2 KOG0331|consensus 100.0 7.1E-48 1.5E-52 332.7 22.3 192 1-192 121-427 (519)
3 KOG0340|consensus 100.0 3.4E-43 7.4E-48 285.9 17.7 221 1-229 37-387 (442)
4 COG0513 SrmB Superfamily II DN 100.0 3.1E-42 6.6E-47 306.1 22.6 214 1-218 59-396 (513)
5 KOG0328|consensus 100.0 5.6E-42 1.2E-46 271.7 14.7 221 1-230 57-398 (400)
6 KOG0338|consensus 100.0 5.2E-42 1.1E-46 290.1 15.4 210 1-214 211-544 (691)
7 PRK04837 ATP-dependent RNA hel 100.0 5.7E-41 1.2E-45 293.2 22.3 219 1-221 38-380 (423)
8 KOG0342|consensus 100.0 7.3E-41 1.6E-45 282.1 18.3 220 1-223 112-457 (543)
9 KOG0333|consensus 100.0 1.2E-40 2.6E-45 282.5 19.1 202 1-202 275-625 (673)
10 PTZ00110 helicase; Provisional 100.0 2E-40 4.4E-45 296.8 20.6 202 1-202 160-485 (545)
11 KOG0345|consensus 100.0 3.1E-39 6.8E-44 270.9 20.0 192 1-192 36-343 (567)
12 PRK04537 ATP-dependent RNA hel 100.0 3.2E-39 6.8E-44 290.2 21.4 218 1-220 39-381 (572)
13 PRK10590 ATP-dependent RNA hel 100.0 4.1E-39 8.8E-44 283.7 21.5 217 1-219 31-368 (456)
14 KOG0326|consensus 100.0 2.5E-40 5.3E-45 266.3 12.2 212 1-219 115-445 (459)
15 KOG0335|consensus 100.0 4.2E-39 9.2E-44 274.4 20.1 215 1-215 104-460 (482)
16 PRK11776 ATP-dependent RNA hel 100.0 1.2E-38 2.6E-43 281.3 21.7 213 1-220 34-366 (460)
17 KOG0343|consensus 100.0 8.3E-40 1.8E-44 279.0 12.8 195 1-196 99-405 (758)
18 KOG0348|consensus 100.0 2.3E-38 5E-43 269.2 20.1 215 1-217 167-568 (708)
19 PRK11634 ATP-dependent RNA hel 100.0 2.2E-38 4.8E-43 286.6 20.8 216 1-223 36-372 (629)
20 PRK11192 ATP-dependent RNA hel 100.0 3.6E-38 7.8E-43 276.5 21.5 213 1-216 31-365 (434)
21 PRK01297 ATP-dependent RNA hel 100.0 1.8E-37 3.8E-42 274.8 22.3 218 1-220 117-459 (475)
22 KOG0336|consensus 100.0 1.8E-38 3.9E-43 262.8 13.8 226 1-232 250-599 (629)
23 KOG0347|consensus 100.0 2.5E-38 5.5E-43 269.7 14.8 202 1-202 211-571 (731)
24 PLN00206 DEAD-box ATP-dependen 100.0 1.5E-37 3.4E-42 277.1 20.3 202 1-202 151-476 (518)
25 KOG0341|consensus 100.0 1.6E-38 3.4E-43 261.7 12.6 190 2-191 201-506 (610)
26 KOG0334|consensus 100.0 6.4E-37 1.4E-41 277.6 17.2 227 1-231 395-746 (997)
27 KOG0346|consensus 100.0 3.2E-37 7E-42 257.1 12.9 202 1-202 49-411 (569)
28 KOG0339|consensus 100.0 4.1E-36 8.8E-41 254.3 17.6 226 1-232 253-602 (731)
29 PTZ00424 helicase 45; Provisio 100.0 3.9E-35 8.5E-40 254.8 22.5 214 1-221 58-392 (401)
30 KOG0332|consensus 100.0 1.7E-35 3.8E-40 242.4 17.4 223 1-230 120-470 (477)
31 TIGR03817 DECH_helic helicase/ 100.0 1.1E-34 2.3E-39 267.2 17.3 213 1-219 44-404 (742)
32 KOG0350|consensus 100.0 4.6E-34 1E-38 241.4 16.2 208 3-215 178-553 (620)
33 TIGR00614 recQ_fam ATP-depende 100.0 5.9E-33 1.3E-37 245.4 18.3 178 1-191 19-311 (470)
34 KOG0327|consensus 100.0 4E-33 8.6E-38 229.5 14.6 219 1-229 56-394 (397)
35 KOG0344|consensus 100.0 6.9E-33 1.5E-37 238.5 15.7 202 1-202 166-496 (593)
36 KOG4284|consensus 100.0 2.3E-33 4.9E-38 243.3 9.2 191 1-196 55-365 (980)
37 PLN03137 ATP-dependent DNA hel 100.0 9.5E-32 2.1E-36 249.3 19.0 178 1-191 468-765 (1195)
38 PRK13767 ATP-dependent helicas 100.0 1.3E-31 2.8E-36 251.0 16.1 191 1-191 40-375 (876)
39 PRK11057 ATP-dependent DNA hel 100.0 5.1E-31 1.1E-35 239.1 18.4 178 1-191 33-321 (607)
40 KOG0337|consensus 100.0 6.3E-31 1.4E-35 218.5 14.2 216 1-222 51-387 (529)
41 TIGR01389 recQ ATP-dependent D 100.0 3.7E-30 8E-35 233.5 16.9 178 1-191 21-309 (591)
42 PRK10917 ATP-dependent DNA hel 100.0 7E-29 1.5E-33 227.5 17.8 168 9-186 283-561 (681)
43 COG1201 Lhr Lhr-like helicases 100.0 9.9E-29 2.1E-33 224.6 18.6 195 1-195 30-346 (814)
44 TIGR00580 mfd transcription-re 100.0 1.3E-28 2.7E-33 229.8 18.7 170 8-185 472-741 (926)
45 PRK10689 transcription-repair 100.0 9.6E-29 2.1E-33 234.9 13.9 186 1-195 608-904 (1147)
46 PRK09751 putative ATP-dependen 100.0 7.6E-28 1.6E-32 230.7 19.2 179 13-191 1-362 (1490)
47 PRK09401 reverse gyrase; Revie 100.0 7.3E-28 1.6E-32 229.4 15.2 186 1-199 88-433 (1176)
48 PRK02362 ski2-like helicase; P 100.0 2.1E-27 4.5E-32 220.2 17.8 182 2-191 32-373 (737)
49 TIGR00643 recG ATP-dependent D 100.0 5.1E-27 1.1E-31 213.8 18.3 170 9-186 257-538 (630)
50 PRK12898 secA preprotein trans 99.9 1.4E-26 3.1E-31 207.3 19.0 96 105-202 472-587 (656)
51 COG1111 MPH1 ERCC4-like helica 99.9 8.1E-26 1.8E-30 192.5 19.8 117 96-212 356-493 (542)
52 PHA02558 uvsW UvsW helicase; P 99.9 2.8E-26 6E-31 204.2 17.1 189 2-197 123-439 (501)
53 TIGR02621 cas3_GSU0051 CRISPR- 99.9 9.3E-27 2E-31 212.8 13.8 183 1-192 23-372 (844)
54 PRK00254 ski2-like helicase; P 99.9 1.8E-26 3.8E-31 213.5 14.4 186 2-196 32-372 (720)
55 PRK09200 preprotein translocas 99.9 1.2E-25 2.5E-30 205.3 19.2 97 104-202 426-542 (790)
56 TIGR01054 rgy reverse gyrase. 99.9 3.7E-26 8E-31 218.0 16.0 174 1-186 86-410 (1171)
57 COG0514 RecQ Superfamily II DN 99.9 1.3E-25 2.8E-30 198.0 15.4 187 3-202 27-338 (590)
58 TIGR01587 cas3_core CRISPR-ass 99.9 2.6E-25 5.7E-30 190.6 16.3 91 105-196 221-318 (358)
59 PHA02653 RNA helicase NPH-II; 99.9 2.1E-25 4.5E-30 202.2 14.7 180 2-185 173-478 (675)
60 PRK01172 ski2-like helicase; P 99.9 3.5E-25 7.7E-30 203.8 15.1 174 2-184 31-338 (674)
61 PRK11664 ATP-dependent RNA hel 99.9 8.7E-25 1.9E-29 202.5 17.5 172 6-186 18-295 (812)
62 PRK14701 reverse gyrase; Provi 99.9 5E-25 1.1E-29 214.4 14.8 175 1-188 87-418 (1638)
63 TIGR01970 DEAH_box_HrpB ATP-de 99.9 2.6E-24 5.7E-29 199.1 18.1 172 6-186 15-292 (819)
64 TIGR03714 secA2 accessory Sec 99.9 2.1E-24 4.6E-29 195.7 17.1 98 104-203 422-539 (762)
65 TIGR00963 secA preprotein tran 99.9 2.4E-23 5.1E-28 187.9 20.2 87 103-191 402-495 (745)
66 PRK13766 Hef nuclease; Provisi 99.9 2.7E-23 5.9E-28 194.2 20.3 88 104-191 363-458 (773)
67 KOG0349|consensus 99.9 1.6E-24 3.5E-29 181.4 10.7 93 100-192 499-594 (725)
68 TIGR03158 cas3_cyano CRISPR-as 99.9 5.2E-23 1.1E-27 176.0 14.0 84 105-197 271-356 (357)
69 TIGR00603 rad25 DNA repair hel 99.9 2.3E-22 4.9E-27 182.3 17.7 91 105-200 495-587 (732)
70 KOG0329|consensus 99.9 3.4E-23 7.4E-28 163.0 9.8 207 1-213 72-367 (387)
71 KOG0354|consensus 99.9 6.4E-22 1.4E-26 177.0 16.3 101 100-200 407-528 (746)
72 COG1204 Superfamily II helicas 99.9 9.6E-21 2.1E-25 174.1 16.7 170 4-180 43-364 (766)
73 COG1205 Distinct helicase fami 99.9 1.4E-21 2.9E-26 181.8 11.0 183 5-193 82-402 (851)
74 COG1202 Superfamily II helicas 99.9 3.9E-21 8.4E-26 166.0 11.6 167 5-178 229-512 (830)
75 COG1061 SSL2 DNA or RNA helica 99.8 7.1E-20 1.5E-24 160.5 16.7 95 105-200 282-376 (442)
76 KOG0351|consensus 99.8 2.7E-21 5.8E-26 179.4 7.1 196 4-214 275-604 (941)
77 PRK05580 primosome assembly pr 99.8 1.3E-19 2.9E-24 166.1 18.0 170 8-186 162-512 (679)
78 KOG0352|consensus 99.8 1.3E-20 2.8E-25 157.9 9.5 85 107-191 256-340 (641)
79 PRK13104 secA preprotein trans 99.8 3E-19 6.4E-24 163.8 16.3 70 102-173 440-509 (896)
80 PRK04914 ATP-dependent helicas 99.8 6E-19 1.3E-23 165.0 18.1 87 104-190 491-580 (956)
81 TIGR00595 priA primosomal prot 99.8 1.3E-18 2.9E-23 154.5 18.3 65 119-183 271-341 (505)
82 COG1200 RecG RecG-like helicas 99.8 6.9E-19 1.5E-23 155.8 16.0 162 12-183 287-560 (677)
83 KOG0353|consensus 99.8 1.1E-19 2.4E-24 150.6 7.1 178 1-191 102-402 (695)
84 PRK12904 preprotein translocas 99.8 5.8E-18 1.2E-22 155.1 16.2 69 104-174 428-496 (830)
85 COG4098 comFA Superfamily II D 99.8 2.9E-17 6.3E-22 134.5 17.4 161 7-179 115-378 (441)
86 PRK12906 secA preprotein trans 99.8 5.6E-17 1.2E-21 148.0 17.8 87 103-191 437-531 (796)
87 COG0556 UvrB Helicase subunit 99.7 1.9E-16 4.2E-21 136.2 19.5 109 103-213 443-567 (663)
88 KOG0952|consensus 99.7 3.7E-17 8E-22 149.4 15.6 178 6-184 124-449 (1230)
89 PRK09694 helicase Cas3; Provis 99.7 7.3E-17 1.6E-21 150.2 17.4 91 105-196 559-661 (878)
90 PRK13107 preprotein translocas 99.7 1.4E-16 3E-21 146.1 15.5 69 103-173 446-514 (908)
91 PRK11448 hsdR type I restricti 99.7 2.4E-16 5.2E-21 150.4 15.7 93 105-199 697-802 (1123)
92 PRK11131 ATP-dependent RNA hel 99.7 1.6E-16 3.5E-21 151.3 14.2 77 104-182 284-363 (1294)
93 COG1197 Mfd Transcription-repa 99.7 5.8E-15 1.3E-19 137.7 18.3 167 8-182 615-881 (1139)
94 PLN03142 Probable chromatin-re 99.7 1.3E-14 2.8E-19 136.8 20.7 108 105-212 486-610 (1033)
95 COG1110 Reverse gyrase [DNA re 99.6 9.4E-15 2E-19 133.8 15.3 79 103-186 332-418 (1187)
96 TIGR01967 DEAH_box_HrpA ATP-de 99.6 8.5E-15 1.8E-19 140.0 14.2 79 105-185 278-359 (1283)
97 PF00271 Helicase_C: Helicase 99.6 9.7E-16 2.1E-20 102.6 4.3 73 124-196 1-73 (78)
98 KOG0951|consensus 99.6 6.5E-14 1.4E-18 130.2 16.0 173 8-180 325-657 (1674)
99 TIGR00631 uvrb excinuclease AB 99.6 3.1E-14 6.7E-19 129.9 11.8 107 105-213 441-563 (655)
100 cd00079 HELICc Helicase superf 99.6 3.6E-14 7.8E-19 103.8 10.0 96 105-200 27-122 (131)
101 PRK05298 excinuclease ABC subu 99.5 2.8E-13 6.1E-18 124.1 13.0 87 105-191 445-536 (652)
102 cd00268 DEADc DEAD-box helicas 99.4 2.4E-13 5.2E-18 107.4 7.9 78 2-82 30-109 (203)
103 COG1198 PriA Primosomal protei 99.4 6.6E-12 1.4E-16 114.6 16.3 65 9-82 218-282 (730)
104 PRK12899 secA preprotein trans 99.4 4.4E-13 9.6E-18 123.7 8.5 81 1-89 100-189 (970)
105 smart00490 HELICc helicase sup 99.4 7.4E-13 1.6E-17 88.8 6.7 76 121-196 2-77 (82)
106 KOG0385|consensus 99.4 1.4E-11 3E-16 110.4 16.0 109 102-210 483-608 (971)
107 TIGR01407 dinG_rel DnaQ family 99.4 2E-11 4.4E-16 115.3 17.1 79 105-186 673-757 (850)
108 COG4096 HsdR Type I site-speci 99.4 1.4E-11 3E-16 111.6 15.0 184 10-201 187-529 (875)
109 COG1203 CRISPR-associated heli 99.4 1.1E-11 2.3E-16 115.3 13.9 94 102-196 436-534 (733)
110 PF00270 DEAD: DEAD/DEAH box h 99.4 9.1E-13 2E-17 100.8 5.5 74 2-81 8-83 (169)
111 KOG0387|consensus 99.3 9.3E-11 2E-15 105.5 18.2 99 104-202 544-659 (923)
112 TIGR00348 hsdR type I site-spe 99.3 3.6E-11 7.9E-16 110.7 15.7 81 106-186 514-621 (667)
113 KOG0953|consensus 99.3 5.5E-11 1.2E-15 103.4 13.3 158 11-184 194-436 (700)
114 KOG0948|consensus 99.2 5.6E-11 1.2E-15 106.3 10.7 168 1-179 137-495 (1041)
115 COG4581 Superfamily II RNA hel 99.1 3.8E-10 8.2E-15 105.8 10.8 184 4-200 130-509 (1041)
116 KOG0384|consensus 99.1 1.2E-09 2.7E-14 102.2 13.4 108 102-209 695-819 (1373)
117 KOG0392|consensus 99.1 1.8E-09 3.9E-14 101.1 14.0 88 105-192 1339-1440(1549)
118 TIGR03117 cas_csf4 CRISPR-asso 99.1 3.9E-10 8.5E-15 102.2 8.6 71 6-82 14-89 (636)
119 PRK12900 secA preprotein trans 99.1 6.2E-10 1.4E-14 103.5 9.3 100 103-204 595-714 (1025)
120 KOG1123|consensus 99.0 2.2E-09 4.8E-14 92.6 11.5 76 103-183 540-616 (776)
121 PRK07246 bifunctional ATP-depe 99.0 7.3E-10 1.6E-14 104.0 8.5 68 6-82 262-332 (820)
122 KOG0389|consensus 99.0 1.5E-08 3.3E-13 91.5 15.7 111 103-213 774-900 (941)
123 PRK12326 preprotein translocas 99.0 1.3E-08 2.8E-13 92.5 15.1 83 102-187 423-521 (764)
124 KOG0947|consensus 99.0 5E-09 1.1E-13 96.2 11.6 78 102-179 563-679 (1248)
125 KOG0390|consensus 99.0 4.2E-08 9.1E-13 89.9 17.1 79 110-188 599-680 (776)
126 KOG1002|consensus 98.9 6.4E-08 1.4E-12 83.7 15.5 114 102-215 634-763 (791)
127 PRK13103 secA preprotein trans 98.9 2.8E-08 6E-13 92.3 13.8 64 11-82 98-163 (913)
128 KOG0950|consensus 98.9 1.4E-08 3E-13 93.5 11.4 171 2-181 234-573 (1008)
129 CHL00122 secA preprotein trans 98.9 5.8E-08 1.3E-12 89.8 15.3 70 102-173 420-491 (870)
130 COG1643 HrpA HrpA-like helicas 98.8 2.4E-07 5.3E-12 86.3 15.9 83 102-184 255-341 (845)
131 KOG4150|consensus 98.8 2.6E-08 5.6E-13 87.4 7.9 167 19-191 400-618 (1034)
132 COG4889 Predicted helicase [Ge 98.7 1.3E-08 2.8E-13 93.1 5.1 93 106-198 460-570 (1518)
133 PRK12902 secA preprotein trans 98.7 1.1E-06 2.4E-11 81.6 15.8 70 102-173 435-506 (939)
134 cd00046 DEXDc DEAD-like helica 98.6 3.1E-07 6.8E-12 66.9 8.3 68 9-82 1-69 (144)
135 PRK08074 bifunctional ATP-depe 98.5 2.7E-07 5.9E-12 88.2 8.5 69 7-82 275-348 (928)
136 KOG1000|consensus 98.5 2.2E-05 4.7E-10 68.4 18.6 112 102-213 488-615 (689)
137 KOG0386|consensus 98.5 8.6E-07 1.9E-11 82.3 10.7 108 103-210 723-847 (1157)
138 PRK12903 secA preprotein trans 98.5 6.6E-06 1.4E-10 76.4 15.9 82 103-187 423-513 (925)
139 smart00488 DEXDc2 DEAD-like he 98.5 4.2E-07 9.2E-12 75.8 7.5 60 6-67 25-84 (289)
140 smart00489 DEXDc3 DEAD-like he 98.5 4.2E-07 9.2E-12 75.8 7.5 60 6-67 25-84 (289)
141 smart00487 DEXDc DEAD-like hel 98.5 3.6E-07 7.8E-12 70.7 6.2 59 5-69 20-79 (201)
142 PF04851 ResIII: Type III rest 98.5 4.5E-07 9.8E-12 69.8 6.7 50 8-68 25-74 (184)
143 KOG0922|consensus 98.4 1.9E-05 4.2E-10 70.8 15.5 83 101-183 253-343 (674)
144 KOG0391|consensus 98.4 2.7E-06 5.9E-11 80.2 10.3 108 102-209 1272-1395(1958)
145 PRK14873 primosome assembly pr 98.4 3E-06 6.5E-11 78.0 10.4 100 14-182 166-265 (665)
146 KOG0949|consensus 98.3 7.9E-06 1.7E-10 76.0 12.4 51 132-182 964-1014(1330)
147 KOG4439|consensus 98.3 2.1E-05 4.6E-10 70.9 14.0 86 103-188 743-831 (901)
148 KOG0924|consensus 98.3 1.5E-05 3.4E-10 71.7 12.3 81 103-183 560-650 (1042)
149 KOG0951|consensus 98.2 2.4E-05 5.2E-10 74.6 13.1 159 8-180 1159-1453(1674)
150 KOG0920|consensus 98.2 2.6E-05 5.6E-10 73.2 12.9 82 102-183 409-497 (924)
151 PRK11747 dinG ATP-dependent DN 98.2 3.9E-06 8.4E-11 78.1 7.6 68 8-82 49-121 (697)
152 KOG0926|consensus 98.2 2.2E-05 4.7E-10 71.9 11.8 51 133-183 607-657 (1172)
153 PF02399 Herpes_ori_bp: Origin 98.2 5.2E-05 1.1E-09 70.0 13.5 65 104-174 280-344 (824)
154 PF13245 AAA_19: Part of AAA d 98.1 9.3E-06 2E-10 53.7 6.4 53 8-64 9-62 (76)
155 COG0553 HepA Superfamily II DN 98.0 6.3E-05 1.4E-09 71.7 11.7 110 104-213 707-834 (866)
156 KOG0923|consensus 98.0 0.00011 2.4E-09 66.2 11.4 83 102-184 469-560 (902)
157 COG1199 DinG Rad3-related DNA 97.9 1.7E-05 3.7E-10 73.5 5.5 55 6-67 32-86 (654)
158 PF13307 Helicase_C_2: Helicas 97.7 7.3E-05 1.6E-09 57.3 5.6 81 103-185 6-92 (167)
159 KOG0388|consensus 97.7 0.00033 7.2E-09 63.7 9.7 87 102-188 1040-1127(1185)
160 TIGR00604 rad3 DNA repair heli 97.6 0.00016 3.4E-09 67.7 7.3 58 5-67 26-83 (705)
161 KOG1015|consensus 97.5 0.00031 6.6E-09 65.7 7.3 89 103-191 1139-1253(1567)
162 PF07652 Flavi_DEAD: Flaviviru 97.4 0.00022 4.8E-09 52.7 4.5 53 8-67 4-56 (148)
163 PF13086 AAA_11: AAA domain; P 97.4 0.00017 3.7E-09 57.5 3.8 61 5-66 13-75 (236)
164 PF00176 SNF2_N: SNF2 family N 97.2 0.0014 2.9E-08 54.5 7.2 71 6-80 23-95 (299)
165 KOG0331|consensus 97.1 0.0031 6.7E-08 56.2 8.8 127 102-232 161-358 (519)
166 PRK08074 bifunctional ATP-depe 97.1 0.0022 4.8E-08 61.9 8.2 83 103-185 749-835 (928)
167 PF06862 DUF1253: Protein of u 97.0 0.0045 9.8E-08 54.3 9.2 86 103-188 297-384 (442)
168 KOG1803|consensus 97.0 0.001 2.2E-08 59.5 5.1 47 11-65 204-250 (649)
169 KOG2340|consensus 97.0 0.0071 1.5E-07 53.6 9.6 87 105-191 551-639 (698)
170 PF00580 UvrD-helicase: UvrD/R 97.0 0.0021 4.6E-08 53.7 6.4 57 7-67 12-68 (315)
171 PRK10917 ATP-dependent DNA hel 96.9 0.005 1.1E-07 57.5 9.2 76 104-179 308-388 (681)
172 PRK07246 bifunctional ATP-depe 96.9 0.0047 1E-07 58.8 8.9 79 104-185 645-725 (820)
173 PRK11747 dinG ATP-dependent DN 96.8 0.0074 1.6E-07 56.5 9.4 78 105-185 533-616 (697)
174 TIGR00376 DNA helicase, putati 96.8 0.0018 3.9E-08 59.8 4.9 61 9-79 174-234 (637)
175 PRK05580 primosome assembly pr 96.8 0.01 2.2E-07 55.4 9.6 77 105-182 189-266 (679)
176 PRK15483 type III restriction- 96.7 0.004 8.6E-08 59.4 6.6 52 8-65 59-110 (986)
177 TIGR00643 recG ATP-dependent D 96.6 0.01 2.2E-07 55.0 8.4 75 105-179 283-362 (630)
178 TIGR00631 uvrb excinuclease AB 96.6 0.0073 1.6E-07 56.0 7.3 56 10-76 31-86 (655)
179 COG1199 DinG Rad3-related DNA 96.6 0.0093 2E-07 55.5 8.0 80 104-186 477-560 (654)
180 TIGR00595 priA primosomal prot 96.5 0.015 3.3E-07 52.3 8.8 75 106-181 25-100 (505)
181 smart00492 HELICc3 helicase su 96.4 0.018 3.9E-07 42.8 7.3 67 119-185 4-79 (141)
182 COG1110 Reverse gyrase [DNA re 96.3 0.013 2.9E-07 55.7 7.3 66 100-165 119-190 (1187)
183 KOG1802|consensus 96.3 0.0096 2.1E-07 54.2 5.9 64 10-82 427-490 (935)
184 TIGR00580 mfd transcription-re 96.2 0.025 5.3E-07 54.5 8.7 75 105-179 499-578 (926)
185 TIGR03117 cas_csf4 CRISPR-asso 96.1 0.033 7.2E-07 51.3 8.8 84 103-188 467-564 (636)
186 COG1200 RecG RecG-like helicas 96.1 0.038 8.3E-07 50.6 8.9 88 100-192 305-397 (677)
187 smart00491 HELICc2 helicase su 96.1 0.02 4.4E-07 42.5 6.0 67 119-185 4-80 (142)
188 TIGR00604 rad3 DNA repair heli 96.0 0.031 6.6E-07 52.6 8.3 82 103-185 519-615 (705)
189 cd01126 TraG_VirD4 The TraG/Tr 96.0 0.0093 2E-07 51.8 4.5 48 10-67 1-48 (384)
190 PF13604 AAA_30: AAA domain; P 96.0 0.017 3.8E-07 45.3 5.7 47 10-64 20-66 (196)
191 PRK12901 secA preprotein trans 96.0 0.12 2.6E-06 49.8 11.7 83 103-187 625-715 (1112)
192 KOG0339|consensus 95.9 0.082 1.8E-06 47.0 9.8 68 93-164 282-354 (731)
193 PF09848 DUF2075: Uncharacteri 95.9 0.015 3.2E-07 50.0 5.5 51 11-67 4-54 (352)
194 PF02534 T4SS-DNA_transf: Type 95.9 0.012 2.6E-07 52.5 5.0 49 9-67 45-93 (469)
195 PRK10689 transcription-repair 95.9 0.041 8.8E-07 54.3 8.9 76 104-179 647-727 (1147)
196 KOG0335|consensus 95.7 0.037 8E-07 48.8 6.9 123 106-232 152-354 (482)
197 PF07517 SecA_DEAD: SecA DEAD- 95.7 0.048 1E-06 44.9 7.0 63 12-82 94-158 (266)
198 PRK13897 type IV secretion sys 95.7 0.02 4.3E-07 52.6 5.3 50 8-67 158-207 (606)
199 COG1197 Mfd Transcription-repa 95.5 0.11 2.4E-06 50.4 9.8 89 100-193 637-730 (1139)
200 COG1198 PriA Primosomal protei 95.5 0.054 1.2E-06 50.6 7.4 102 70-180 216-319 (730)
201 COG0513 SrmB Superfamily II DN 95.4 0.057 1.2E-06 48.9 7.3 67 109-179 102-179 (513)
202 PRK14701 reverse gyrase; Provi 95.4 0.072 1.6E-06 54.3 8.5 61 105-165 121-187 (1638)
203 COG0653 SecA Preprotein transl 95.4 0.14 3.1E-06 48.2 9.8 70 102-173 425-494 (822)
204 COG0610 Type I site-specific r 95.2 0.049 1.1E-06 52.9 6.6 54 8-67 273-326 (962)
205 PRK13851 type IV secretion sys 95.2 0.019 4.1E-07 49.1 3.5 42 7-57 161-202 (344)
206 PF12340 DUF3638: Protein of u 95.2 0.061 1.3E-06 43.1 6.1 54 6-67 39-92 (229)
207 COG3973 Superfamily I DNA and 95.2 0.063 1.4E-06 48.6 6.7 59 7-67 225-283 (747)
208 PRK12899 secA preprotein trans 95.2 0.078 1.7E-06 50.6 7.5 82 103-187 565-655 (970)
209 TIGR00596 rad1 DNA repair prot 95.1 0.075 1.6E-06 50.5 7.4 25 104-128 293-317 (814)
210 PRK13850 type IV secretion sys 95.1 0.042 9E-07 51.1 5.5 49 9-67 140-188 (670)
211 KOG0952|consensus 95.1 0.024 5.3E-07 54.0 3.9 70 8-83 943-1014(1230)
212 COG2805 PilT Tfp pilus assembl 95.0 0.019 4.2E-07 47.7 2.8 25 11-36 128-152 (353)
213 TIGR03877 thermo_KaiC_1 KaiC d 95.0 0.049 1.1E-06 44.1 5.2 54 5-67 18-71 (237)
214 PRK13833 conjugal transfer pro 95.0 0.036 7.8E-07 47.0 4.4 45 7-57 143-187 (323)
215 TIGR02782 TrbB_P P-type conjug 94.9 0.05 1.1E-06 45.7 5.1 45 7-57 131-175 (299)
216 PRK13894 conjugal transfer ATP 94.9 0.035 7.6E-07 47.0 4.1 46 6-57 146-191 (319)
217 PF01695 IstB_IS21: IstB-like 94.8 0.045 9.7E-07 42.3 4.2 48 6-62 45-92 (178)
218 PRK13822 conjugal transfer cou 94.7 0.061 1.3E-06 49.9 5.5 50 8-67 224-273 (641)
219 cd01133 F1-ATPase_beta F1 ATP 94.7 0.65 1.4E-05 38.4 10.8 31 3-34 64-94 (274)
220 cd01127 TrwB Bacterial conjuga 94.6 0.039 8.5E-07 48.4 4.0 51 2-60 36-86 (410)
221 PRK13900 type IV secretion sys 94.6 0.043 9.2E-07 46.8 4.0 43 7-58 159-201 (332)
222 PRK11054 helD DNA helicase IV; 94.6 0.065 1.4E-06 50.1 5.5 55 9-67 210-264 (684)
223 cd01124 KaiC KaiC is a circadi 94.6 0.064 1.4E-06 41.3 4.7 48 11-67 2-49 (187)
224 cd00268 DEADc DEAD-box helicas 94.6 0.36 7.8E-06 37.6 9.1 72 104-179 67-148 (203)
225 PRK10919 ATP-dependent DNA hel 94.5 0.071 1.5E-06 49.9 5.6 56 8-67 15-70 (672)
226 PF10412 TrwB_AAD_bind: Type I 94.5 0.039 8.5E-07 48.0 3.6 53 2-62 9-61 (386)
227 TIGR02767 TraG-Ti Ti-type conj 94.3 0.088 1.9E-06 48.6 5.6 50 8-67 211-260 (623)
228 PF02562 PhoH: PhoH-like prote 94.2 0.079 1.7E-06 41.9 4.5 41 9-55 20-60 (205)
229 KOG0333|consensus 94.2 0.61 1.3E-05 41.8 10.1 128 100-232 316-534 (673)
230 PRK11776 ATP-dependent RNA hel 94.2 0.24 5.2E-06 44.1 8.0 71 105-179 71-152 (460)
231 PRK05298 excinuclease ABC subu 94.2 0.15 3.3E-06 47.5 6.9 56 10-76 34-89 (652)
232 TIGR01054 rgy reverse gyrase. 94.1 0.16 3.5E-06 50.3 7.3 60 105-164 120-186 (1171)
233 PRK11634 ATP-dependent RNA hel 94.1 0.24 5.1E-06 46.0 8.0 72 104-179 72-154 (629)
234 COG1484 DnaC DNA replication p 94.1 0.11 2.4E-06 42.5 5.3 51 7-66 104-154 (254)
235 PRK13876 conjugal transfer cou 94.1 0.065 1.4E-06 49.8 4.2 50 8-67 144-193 (663)
236 KOG0925|consensus 94.1 1.3 2.7E-05 39.6 11.7 79 102-184 249-341 (699)
237 PRK11773 uvrD DNA-dependent he 94.0 0.11 2.4E-06 49.0 5.8 56 8-67 22-77 (721)
238 smart00382 AAA ATPases associa 94.0 0.078 1.7E-06 37.9 3.8 41 8-56 2-42 (148)
239 TIGR00614 recQ_fam ATP-depende 93.9 0.28 6.1E-06 43.9 8.0 59 106-164 51-109 (470)
240 PRK13880 conjugal transfer cou 93.9 0.063 1.4E-06 49.8 3.8 47 8-64 175-221 (636)
241 TIGR01075 uvrD DNA helicase II 93.8 0.12 2.6E-06 48.7 5.7 56 8-67 17-72 (715)
242 PF00437 T2SE: Type II/IV secr 93.8 0.05 1.1E-06 44.8 2.8 44 7-58 126-169 (270)
243 cd01132 F1_ATPase_alpha F1 ATP 93.8 2 4.3E-05 35.6 12.0 23 2-24 63-85 (274)
244 PRK04328 hypothetical protein; 93.6 0.15 3.2E-06 41.7 5.1 54 5-67 20-73 (249)
245 PF06745 KaiC: KaiC; InterPro 93.6 0.07 1.5E-06 42.7 3.2 55 5-67 16-70 (226)
246 TIGR01074 rep ATP-dependent DN 93.4 0.2 4.2E-06 46.9 6.2 56 8-67 14-69 (664)
247 PRK06921 hypothetical protein; 93.3 0.21 4.6E-06 41.2 5.7 50 7-64 116-165 (266)
248 PRK08533 flagellar accessory p 93.3 0.22 4.7E-06 40.2 5.5 54 5-67 21-74 (230)
249 TIGR01447 recD exodeoxyribonuc 93.2 0.2 4.4E-06 46.0 5.9 58 6-66 158-215 (586)
250 PF12846 AAA_10: AAA-like doma 93.2 0.13 2.9E-06 42.4 4.4 42 9-58 2-43 (304)
251 PRK06526 transposase; Provisio 93.1 0.1 2.2E-06 42.7 3.4 47 6-61 96-142 (254)
252 PRK11192 ATP-dependent RNA hel 93.0 0.59 1.3E-05 41.2 8.5 71 105-179 72-152 (434)
253 TIGR02562 cas3_yersinia CRISPR 93.0 0.19 4.1E-06 48.6 5.4 66 8-79 431-498 (1110)
254 TIGR03878 thermo_KaiC_2 KaiC d 93.0 0.28 6.2E-06 40.2 5.9 55 5-67 33-90 (259)
255 TIGR01389 recQ ATP-dependent D 92.9 0.54 1.2E-05 43.4 8.2 59 106-164 53-111 (591)
256 COG2804 PulE Type II secretory 92.8 0.089 1.9E-06 46.8 2.8 25 11-36 261-285 (500)
257 TIGR02785 addA_Gpos recombinat 92.8 0.25 5.5E-06 49.4 6.2 57 6-67 12-68 (1232)
258 COG0553 HepA Superfamily II DN 92.7 0.094 2E-06 50.1 3.1 151 8-187 358-510 (866)
259 PRK08181 transposase; Validate 92.7 0.2 4.3E-06 41.4 4.6 47 7-62 105-151 (269)
260 TIGR03743 SXT_TraD conjugative 92.6 0.54 1.2E-05 43.7 7.8 56 6-69 174-231 (634)
261 PRK05973 replicative DNA helic 92.6 0.25 5.5E-06 40.0 5.0 54 5-67 61-114 (237)
262 CHL00181 cbbX CbbX; Provisiona 92.6 5.4 0.00012 33.3 14.0 52 103-155 157-211 (287)
263 cd00984 DnaB_C DnaB helicase C 92.5 0.31 6.7E-06 39.2 5.5 49 5-60 10-61 (242)
264 KOG0347|consensus 92.5 0.4 8.7E-06 43.2 6.4 53 108-164 265-321 (731)
265 PRK12377 putative replication 92.5 0.26 5.6E-06 40.2 4.9 47 9-64 102-148 (248)
266 PF13481 AAA_25: AAA domain; P 92.4 0.36 7.8E-06 37.3 5.5 61 6-68 30-93 (193)
267 COG3587 Restriction endonuclea 92.4 0.19 4.2E-06 47.2 4.5 33 156-188 483-515 (985)
268 cd01131 PilT Pilus retraction 92.4 0.21 4.5E-06 39.2 4.2 39 11-56 4-42 (198)
269 TIGR03881 KaiC_arch_4 KaiC dom 92.4 0.35 7.6E-06 38.6 5.6 54 5-67 17-70 (229)
270 KOG0744|consensus 92.2 1.8 3.8E-05 36.8 9.5 145 8-188 177-331 (423)
271 PRK04537 ATP-dependent RNA hel 92.2 0.59 1.3E-05 42.9 7.5 70 106-179 84-164 (572)
272 PF04665 Pox_A32: Poxvirus A32 92.2 0.22 4.7E-06 40.4 4.1 25 9-34 14-38 (241)
273 KOG1016|consensus 92.1 0.35 7.6E-06 45.3 5.8 89 104-192 717-826 (1387)
274 cd01134 V_A-ATPase_A V/A-type 92.1 5.3 0.00012 34.4 12.5 54 3-67 152-205 (369)
275 TIGR02788 VirB11 P-type DNA tr 92.1 0.15 3.2E-06 43.0 3.3 24 7-31 143-166 (308)
276 PF01935 DUF87: Domain of unkn 92.1 0.21 4.5E-06 40.0 4.0 47 7-60 22-68 (229)
277 COG1219 ClpX ATP-dependent pro 92.1 0.083 1.8E-06 44.4 1.6 20 6-25 95-114 (408)
278 PRK10875 recD exonuclease V su 92.0 0.25 5.5E-06 45.6 4.8 56 6-65 165-220 (615)
279 PRK09183 transposase/IS protei 92.0 0.43 9.3E-06 39.2 5.7 48 5-61 99-146 (259)
280 PRK10590 ATP-dependent RNA hel 91.9 1.1 2.3E-05 40.0 8.6 69 107-179 76-154 (456)
281 TIGR02525 plasmid_TraJ plasmid 91.9 0.24 5.1E-06 42.9 4.3 42 9-56 150-191 (372)
282 PRK08727 hypothetical protein; 91.8 0.48 1E-05 38.2 5.7 50 9-67 42-91 (233)
283 TIGR03754 conj_TOL_TraD conjug 91.8 0.88 1.9E-05 42.2 8.0 64 6-77 178-243 (643)
284 PRK14722 flhF flagellar biosyn 91.7 1.7 3.8E-05 37.6 9.4 27 6-33 135-161 (374)
285 PRK04837 ATP-dependent RNA hel 91.7 0.96 2.1E-05 39.8 8.1 71 105-179 82-162 (423)
286 TIGR02655 circ_KaiC circadian 91.6 0.34 7.4E-06 43.5 5.1 54 5-67 260-313 (484)
287 COG0467 RAD55 RecA-superfamily 91.5 0.43 9.4E-06 39.0 5.3 54 5-67 20-73 (260)
288 TIGR03880 KaiC_arch_3 KaiC dom 91.4 0.53 1.1E-05 37.5 5.6 54 5-67 13-66 (224)
289 PTZ00185 ATPase alpha subunit; 91.3 9.2 0.0002 34.8 13.5 65 2-67 183-250 (574)
290 PRK07952 DNA replication prote 91.3 0.49 1.1E-05 38.5 5.3 47 9-64 100-146 (244)
291 cd01394 radB RadB. The archaea 91.3 0.64 1.4E-05 36.8 6.0 39 5-51 16-54 (218)
292 PRK10536 hypothetical protein; 91.2 0.35 7.6E-06 39.6 4.4 29 7-35 73-101 (262)
293 TIGR02012 tigrfam_recA protein 91.2 0.45 9.8E-06 40.3 5.2 44 5-56 52-95 (321)
294 KOG0701|consensus 91.1 0.067 1.5E-06 53.7 0.2 89 107-195 293-393 (1606)
295 KOG0338|consensus 91.1 1.4 3.1E-05 39.4 8.2 72 104-179 250-332 (691)
296 PRK13764 ATPase; Provisional 91.1 0.3 6.5E-06 44.9 4.3 26 8-34 257-282 (602)
297 TIGR02759 TraD_Ftype type IV c 91.1 0.25 5.5E-06 45.2 3.8 31 3-34 171-201 (566)
298 TIGR01073 pcrA ATP-dependent D 91.0 0.43 9.3E-06 45.1 5.4 56 8-67 17-72 (726)
299 COG1074 RecB ATP-dependent exo 90.9 0.58 1.3E-05 46.6 6.4 59 6-67 14-72 (1139)
300 cd00009 AAA The AAA+ (ATPases 90.9 0.66 1.4E-05 33.3 5.3 26 7-33 18-43 (151)
301 PF00006 ATP-synt_ab: ATP synt 90.8 3.3 7.1E-05 33.0 9.5 27 4-31 11-37 (215)
302 PRK13700 conjugal transfer pro 90.7 0.33 7.2E-06 45.3 4.2 50 2-59 179-228 (732)
303 PRK06835 DNA replication prote 90.6 0.51 1.1E-05 40.2 5.0 46 8-62 183-228 (329)
304 PF13555 AAA_29: P-loop contai 90.6 0.17 3.7E-06 31.8 1.6 27 6-34 21-47 (62)
305 COG0593 DnaA ATPase involved i 90.5 0.82 1.8E-05 40.0 6.2 64 7-77 112-182 (408)
306 PRK09281 F0F1 ATP synthase sub 90.5 5.9 0.00013 35.8 11.8 22 3-24 157-178 (502)
307 PTZ00110 helicase; Provisional 90.5 1.4 3.1E-05 40.2 8.1 71 105-179 202-282 (545)
308 KOG0330|consensus 90.5 1.7 3.7E-05 37.6 7.9 68 93-164 116-187 (476)
309 KOG0334|consensus 90.4 4.9 0.00011 39.0 11.5 58 102-163 434-495 (997)
310 cd00983 recA RecA is a bacter 90.4 0.57 1.2E-05 39.8 5.1 46 5-58 52-97 (325)
311 PRK09280 F0F1 ATP synthase sub 90.3 6.5 0.00014 35.1 11.7 100 3-115 139-246 (463)
312 TIGR01420 pilT_fam pilus retra 90.3 0.51 1.1E-05 40.4 4.8 43 8-57 122-164 (343)
313 PRK12900 secA preprotein trans 90.3 1.5 3.3E-05 42.5 8.2 98 11-116 154-286 (1025)
314 TIGR02237 recomb_radB DNA repa 90.2 0.71 1.5E-05 36.2 5.3 41 5-53 9-49 (209)
315 PRK01297 ATP-dependent RNA hel 90.0 2.2 4.7E-05 38.2 8.8 71 106-179 162-242 (475)
316 PRK11057 ATP-dependent DNA hel 89.9 1.6 3.4E-05 40.5 7.9 59 106-164 65-123 (607)
317 PRK10436 hypothetical protein; 89.8 0.43 9.3E-06 42.6 4.1 24 10-34 220-243 (462)
318 PRK08116 hypothetical protein; 89.8 0.62 1.3E-05 38.5 4.8 47 9-64 115-161 (268)
319 COG0630 VirB11 Type IV secreto 89.8 0.4 8.7E-06 40.5 3.7 44 6-58 141-184 (312)
320 PRK12597 F0F1 ATP synthase sub 89.7 9 0.00019 34.3 12.1 101 3-116 138-246 (461)
321 PLN03137 ATP-dependent DNA hel 89.7 1.8 3.8E-05 42.8 8.2 59 106-164 500-560 (1195)
322 PF00270 DEAD: DEAD/DEAH box h 89.6 3.7 8.1E-05 30.5 8.7 72 104-179 42-124 (169)
323 TIGR03324 alt_F1F0_F1_al alter 89.6 6.4 0.00014 35.5 11.1 23 2-24 156-178 (497)
324 PRK11823 DNA repair protein Ra 89.5 0.71 1.5E-05 41.1 5.2 53 6-67 78-130 (446)
325 PRK09376 rho transcription ter 89.5 8.6 0.00019 33.7 11.5 110 3-126 164-275 (416)
326 TIGR02524 dot_icm_DotB Dot/Icm 89.5 0.54 1.2E-05 40.6 4.3 28 7-35 133-160 (358)
327 cd00544 CobU Adenosylcobinamid 89.4 0.56 1.2E-05 35.9 4.0 46 11-67 2-47 (169)
328 COG4962 CpaF Flp pilus assembl 89.3 0.46 9.9E-06 40.4 3.7 127 8-156 173-300 (355)
329 cd01130 VirB11-like_ATPase Typ 89.3 0.54 1.2E-05 36.4 3.9 26 6-32 23-48 (186)
330 PRK04296 thymidine kinase; Pro 89.3 0.48 1E-05 36.9 3.6 36 9-52 3-38 (190)
331 TIGR02655 circ_KaiC circadian 89.3 0.72 1.6E-05 41.5 5.2 55 5-67 18-72 (484)
332 PF05872 DUF853: Bacterial pro 89.3 0.16 3.5E-06 44.7 1.0 32 2-34 13-44 (502)
333 COG1419 FlhF Flagellar GTP-bin 89.2 2.7 5.7E-05 36.7 8.2 135 8-165 203-348 (407)
334 PF00448 SRP54: SRP54-type pro 89.2 0.5 1.1E-05 37.1 3.7 134 11-164 4-149 (196)
335 PF06068 TIP49: TIP49 C-termin 89.2 0.3 6.5E-06 42.0 2.5 28 6-34 48-75 (398)
336 TIGR03819 heli_sec_ATPase heli 89.2 0.44 9.5E-06 40.8 3.5 42 7-57 177-218 (340)
337 KOG1533|consensus 89.1 0.45 9.6E-06 38.4 3.2 24 11-35 5-28 (290)
338 CHL00059 atpA ATP synthase CF1 89.1 7 0.00015 35.1 10.9 22 3-24 136-157 (485)
339 COG1224 TIP49 DNA helicase TIP 89.0 0.38 8.1E-06 41.2 2.9 28 6-34 63-90 (450)
340 COG4185 Uncharacterized protei 89.0 0.2 4.3E-06 37.9 1.1 38 11-60 5-42 (187)
341 PRK09401 reverse gyrase; Revie 88.9 1.5 3.2E-05 43.8 7.3 60 105-164 122-187 (1176)
342 PF12775 AAA_7: P-loop contain 88.9 0.21 4.7E-06 41.3 1.4 25 6-31 31-55 (272)
343 cd01129 PulE-GspE PulE/GspE Th 88.9 0.51 1.1E-05 38.9 3.6 24 10-34 82-105 (264)
344 PRK06067 flagellar accessory p 88.9 1.2 2.7E-05 35.7 5.8 54 5-67 22-75 (234)
345 PF13401 AAA_22: AAA domain; P 88.8 0.22 4.9E-06 35.7 1.4 26 7-33 3-28 (131)
346 PRK00149 dnaA chromosomal repl 88.8 1 2.3E-05 40.0 5.8 49 9-64 149-197 (450)
347 TIGR02784 addA_alphas double-s 88.8 1.2 2.7E-05 44.3 6.9 55 8-67 10-64 (1141)
348 TIGR00362 DnaA chromosomal rep 88.8 1 2.3E-05 39.4 5.8 48 9-63 137-184 (405)
349 PF00308 Bac_DnaA: Bacterial d 88.8 0.58 1.3E-05 37.4 3.8 48 10-64 36-83 (219)
350 cd01122 GP4d_helicase GP4d_hel 88.7 0.58 1.3E-05 38.4 3.9 54 6-67 28-81 (271)
351 TIGR01547 phage_term_2 phage t 88.5 1.5 3.3E-05 38.2 6.5 53 10-67 3-56 (396)
352 TIGR02880 cbbX_cfxQ probable R 88.5 1.1 2.3E-05 37.4 5.4 52 103-155 156-210 (284)
353 cd01128 rho_factor Transcripti 88.4 6.1 0.00013 32.3 9.6 21 4-24 12-32 (249)
354 PRK14087 dnaA chromosomal repl 88.4 1.2 2.7E-05 39.6 6.0 49 9-64 142-190 (450)
355 COG1111 MPH1 ERCC4-like helica 88.3 2 4.4E-05 38.4 7.0 71 108-184 60-140 (542)
356 PF05729 NACHT: NACHT domain 88.3 0.9 2E-05 33.7 4.5 25 11-36 3-27 (166)
357 KOG1807|consensus 88.1 0.89 1.9E-05 42.6 4.8 70 10-83 395-464 (1025)
358 TIGR02881 spore_V_K stage V sp 87.9 0.39 8.5E-06 39.3 2.4 28 5-33 39-66 (261)
359 PF01580 FtsK_SpoIIIE: FtsK/Sp 87.9 0.84 1.8E-05 35.8 4.2 27 8-35 38-64 (205)
360 KOG1942|consensus 87.7 0.51 1.1E-05 39.4 2.9 28 6-34 62-89 (456)
361 cd01120 RecA-like_NTPases RecA 87.7 1.3 2.7E-05 32.7 4.9 38 11-56 2-39 (165)
362 TIGR03305 alt_F1F0_F1_bet alte 87.7 12 0.00026 33.3 11.5 100 3-115 133-240 (449)
363 PF07088 GvpD: GvpD gas vesicl 87.6 0.44 9.6E-06 41.3 2.5 38 7-53 9-46 (484)
364 KOG1132|consensus 87.6 1.5 3.3E-05 41.6 6.1 26 7-32 39-64 (945)
365 cd01524 RHOD_Pyr_redox Member 87.5 1.2 2.6E-05 29.8 4.3 38 104-141 49-86 (90)
366 PRK12726 flagellar biosynthesi 87.5 15 0.00032 32.2 11.7 32 133-164 320-351 (407)
367 PF07728 AAA_5: AAA domain (dy 87.4 0.33 7.2E-06 35.4 1.5 23 10-33 1-23 (139)
368 PRK08972 fliI flagellum-specif 87.3 8.9 0.00019 34.1 10.4 20 5-24 159-178 (444)
369 PRK05642 DNA replication initi 87.3 1.5 3.2E-05 35.4 5.3 43 9-60 46-88 (234)
370 PTZ00301 uridine kinase; Provi 87.3 0.91 2E-05 36.0 4.0 22 12-34 7-28 (210)
371 TIGR03499 FlhF flagellar biosy 87.2 0.99 2.1E-05 37.5 4.4 26 7-33 193-218 (282)
372 TIGR02538 type_IV_pilB type IV 87.2 0.47 1E-05 43.5 2.6 24 10-34 318-341 (564)
373 PRK11889 flhF flagellar biosyn 87.1 21 0.00045 31.6 12.3 134 8-164 241-386 (436)
374 PRK14088 dnaA chromosomal repl 87.0 1.2 2.7E-05 39.5 5.1 49 9-64 131-179 (440)
375 KOG1133|consensus 87.0 0.57 1.2E-05 43.3 3.0 23 107-129 630-652 (821)
376 PRK06893 DNA replication initi 86.9 0.8 1.7E-05 36.8 3.6 34 11-52 42-75 (229)
377 PRK06995 flhF flagellar biosyn 86.9 22 0.00048 32.1 12.8 54 132-185 368-421 (484)
378 TIGR01039 atpD ATP synthase, F 86.9 19 0.00041 32.2 12.3 101 3-116 138-246 (461)
379 PRK08084 DNA replication initi 86.9 1.1 2.4E-05 36.1 4.4 38 7-52 44-81 (235)
380 PRK08939 primosomal protein Dn 86.7 1.1 2.3E-05 37.9 4.3 48 7-63 155-202 (306)
381 PF04364 DNA_pol3_chi: DNA pol 86.6 6.4 0.00014 28.9 8.0 88 105-203 28-116 (137)
382 PF13207 AAA_17: AAA domain; P 86.6 0.4 8.6E-06 34.0 1.5 22 11-33 2-23 (121)
383 PF00004 AAA: ATPase family as 86.5 0.65 1.4E-05 33.1 2.6 22 11-33 1-22 (132)
384 TIGR02640 gas_vesic_GvpN gas v 86.5 0.36 7.8E-06 39.7 1.4 20 5-24 18-37 (262)
385 TIGR02533 type_II_gspE general 86.4 0.77 1.7E-05 41.3 3.5 23 11-34 245-267 (486)
386 TIGR00416 sms DNA repair prote 86.4 1.4 3.1E-05 39.2 5.2 54 5-67 91-144 (454)
387 TIGR01448 recD_rel helicase, p 86.3 0.76 1.6E-05 43.5 3.6 50 7-62 337-386 (720)
388 PF03796 DnaB_C: DnaB-like hel 86.3 2.1 4.5E-05 35.0 5.8 39 7-52 18-56 (259)
389 PRK12901 secA preprotein trans 86.2 3.9 8.4E-05 40.0 8.1 99 11-117 185-319 (1112)
390 PF09439 SRPRB: Signal recogni 86.2 0.41 9E-06 37.1 1.5 20 8-27 3-22 (181)
391 PRK13766 Hef nuclease; Provisi 86.1 3.6 7.9E-05 39.2 8.1 69 106-179 58-136 (773)
392 TIGR00962 atpA proton transloc 86.0 17 0.00038 32.9 11.8 22 3-24 156-177 (501)
393 PRK14974 cell division protein 86.0 2.4 5.2E-05 36.3 6.1 51 9-67 141-194 (336)
394 PRK13343 F0F1 ATP synthase sub 85.6 24 0.00052 32.0 12.4 23 2-24 156-178 (502)
395 TIGR03420 DnaA_homol_Hda DnaA 85.6 1.3 2.7E-05 35.2 4.1 26 7-33 37-62 (226)
396 KOG0735|consensus 85.5 5.6 0.00012 37.4 8.4 145 3-155 426-588 (952)
397 PRK12723 flagellar biosynthesi 85.5 24 0.00053 30.8 16.0 137 7-164 173-321 (388)
398 PF13238 AAA_18: AAA domain; P 85.4 0.49 1.1E-05 33.6 1.5 14 11-24 1-14 (129)
399 PRK12678 transcription termina 85.4 4.1 8.9E-05 37.5 7.5 32 3-35 411-442 (672)
400 PRK09302 circadian clock prote 85.4 1.5 3.2E-05 39.7 4.9 55 5-67 28-82 (509)
401 TIGR02768 TraA_Ti Ti-type conj 85.4 1.9 4.2E-05 40.9 5.8 47 8-62 368-414 (744)
402 PRK09302 circadian clock prote 85.3 1.6 3.4E-05 39.5 5.0 54 5-67 270-323 (509)
403 PRK05800 cobU adenosylcobinami 85.2 1.3 2.9E-05 33.8 3.9 47 10-67 3-49 (170)
404 COG1125 OpuBA ABC-type proline 85.1 1.1 2.4E-05 36.8 3.4 54 6-67 25-84 (309)
405 PRK14721 flhF flagellar biosyn 85.1 10 0.00023 33.5 9.8 32 133-164 304-335 (420)
406 cd01523 RHOD_Lact_B Member of 84.9 1.8 3.9E-05 29.5 4.1 38 104-141 59-96 (100)
407 TIGR00176 mobB molybdopterin-g 84.8 1.5 3.3E-05 32.9 4.0 35 11-53 2-36 (155)
408 PF01583 APS_kinase: Adenylyls 84.8 13 0.00028 28.1 8.9 27 8-35 2-28 (156)
409 KOG1131|consensus 84.8 3.7 8E-05 37.1 6.7 58 6-67 33-90 (755)
410 PRK12608 transcription termina 84.8 1.6 3.5E-05 37.8 4.5 32 3-35 128-159 (380)
411 PRK09361 radB DNA repair and r 84.7 1.6 3.4E-05 34.8 4.3 40 5-52 20-59 (225)
412 PRK06936 type III secretion sy 84.5 16 0.00034 32.6 10.6 20 5-24 159-178 (439)
413 PRK09354 recA recombinase A; P 84.3 2.2 4.7E-05 36.6 5.1 45 5-57 57-101 (349)
414 COG1136 SalX ABC-type antimicr 84.3 0.84 1.8E-05 36.7 2.4 28 6-35 29-56 (226)
415 cd01121 Sms Sms (bacterial rad 84.2 2.3 5E-05 36.9 5.3 53 6-67 80-132 (372)
416 PF05970 PIF1: PIF1-like helic 84.2 2 4.4E-05 37.1 5.0 54 6-67 20-75 (364)
417 KOG1806|consensus 84.2 1.2 2.6E-05 43.1 3.7 55 7-67 752-806 (1320)
418 PRK08903 DnaA regulatory inact 84.2 1.6 3.5E-05 34.8 4.1 38 7-52 41-78 (227)
419 TIGR03498 FliI_clade3 flagella 84.0 22 0.00047 31.5 11.2 53 5-64 137-189 (418)
420 cd01136 ATPase_flagellum-secre 84.0 19 0.00042 30.6 10.7 99 5-115 66-167 (326)
421 KOG0348|consensus 83.9 4.9 0.00011 36.4 7.1 77 102-179 207-292 (708)
422 KOG0745|consensus 83.9 0.65 1.4E-05 40.8 1.8 27 6-34 224-250 (564)
423 TIGR00665 DnaB replicative DNA 83.9 1.5 3.3E-05 38.7 4.2 58 6-71 193-250 (434)
424 smart00115 CASc Caspase, inter 83.9 16 0.00035 29.5 9.9 65 103-169 5-84 (241)
425 TIGR03600 phage_DnaB phage rep 83.8 2.8 6E-05 36.9 5.8 53 6-66 192-244 (421)
426 PF13671 AAA_33: AAA domain; P 83.8 0.56 1.2E-05 34.2 1.2 14 11-24 2-15 (143)
427 TIGR02746 TraC-F-type type-IV 83.6 1.4 3.1E-05 42.1 4.2 41 8-56 430-470 (797)
428 PRK05728 DNA polymerase III su 83.5 13 0.00029 27.4 8.5 85 104-202 27-114 (142)
429 PRK07004 replicative DNA helic 83.5 2.4 5.3E-05 37.9 5.3 52 5-64 210-261 (460)
430 KOG0741|consensus 83.4 15 0.00033 33.5 9.9 49 10-68 540-595 (744)
431 KOG0329|consensus 83.3 3.2 6.9E-05 34.0 5.3 71 105-179 109-190 (387)
432 PRK05748 replicative DNA helic 82.8 2.1 4.5E-05 38.1 4.6 53 6-66 201-253 (448)
433 COG1474 CDC6 Cdc6-related prot 82.7 2.2 4.8E-05 36.9 4.6 28 8-36 42-69 (366)
434 COG4604 CeuD ABC-type enteroch 82.7 2 4.4E-05 34.0 3.9 54 5-60 24-77 (252)
435 PRK13889 conjugal transfer rel 82.6 1.3 2.9E-05 43.2 3.5 49 5-61 358-407 (988)
436 PRK14729 miaA tRNA delta(2)-is 82.5 0.77 1.7E-05 38.6 1.7 22 10-32 6-27 (300)
437 COG1223 Predicted ATPase (AAA+ 82.5 5.5 0.00012 32.9 6.4 18 7-24 150-167 (368)
438 PLN00206 DEAD-box ATP-dependen 82.5 5.9 0.00013 36.0 7.5 71 105-179 195-275 (518)
439 KOG0743|consensus 82.4 17 0.00036 32.3 9.7 130 11-156 238-386 (457)
440 PRK12724 flagellar biosynthesi 82.4 35 0.00076 30.3 15.4 48 117-164 316-368 (432)
441 COG0514 RecQ Superfamily II DN 82.3 4.2 9.2E-05 37.4 6.3 58 106-163 57-114 (590)
442 KOG1133|consensus 82.2 11 0.00023 35.4 8.7 32 155-186 686-721 (821)
443 TIGR00150 HI0065_YjeE ATPase, 82.1 1.6 3.4E-05 32.0 3.0 27 6-33 20-46 (133)
444 KOG0991|consensus 82.1 1.3 2.8E-05 35.9 2.7 25 10-35 50-74 (333)
445 PRK14530 adenylate kinase; Pro 82.1 0.9 2E-05 36.0 1.9 18 7-24 2-19 (215)
446 TIGR03496 FliI_clade1 flagella 82.1 34 0.00074 30.2 11.7 20 5-24 134-153 (411)
447 KOG0391|consensus 82.1 2.9 6.3E-05 41.4 5.3 66 10-81 636-701 (1958)
448 COG5008 PilU Tfp pilus assembl 82.0 1.8 3.8E-05 35.8 3.4 25 11-36 130-154 (375)
449 PRK00411 cdc6 cell division co 81.8 2.2 4.8E-05 37.0 4.4 26 8-34 55-80 (394)
450 PF03029 ATP_bind_1: Conserved 81.8 1.5 3.3E-05 35.5 3.1 23 13-36 1-23 (238)
451 COG3451 VirB4 Type IV secretor 81.7 1.6 3.4E-05 41.8 3.6 25 9-34 437-461 (796)
452 TIGR00064 ftsY signal recognit 81.7 4.5 9.7E-05 33.5 5.9 35 9-51 73-107 (272)
453 TIGR01043 ATP_syn_A_arch ATP s 81.7 35 0.00077 31.5 11.9 53 4-67 218-270 (578)
454 PF13191 AAA_16: AAA ATPase do 81.6 1.2 2.7E-05 33.8 2.4 29 6-35 22-50 (185)
455 PF03205 MobB: Molybdopterin g 81.5 1.8 3.9E-05 32.0 3.2 24 11-35 3-26 (140)
456 TIGR03744 traC_PFL_4706 conjug 81.5 1.7 3.6E-05 42.3 3.8 41 8-55 475-515 (893)
457 cd03115 SRP The signal recogni 81.5 2.3 4.9E-05 32.3 3.9 23 11-34 3-25 (173)
458 PF00910 RNA_helicase: RNA hel 81.5 1.4 3E-05 30.8 2.4 24 11-35 1-24 (107)
459 PRK07960 fliI flagellum-specif 81.4 20 0.00043 32.0 10.0 49 5-60 172-220 (455)
460 TIGR03817 DECH_helic helicase/ 81.4 6.7 0.00015 37.4 7.6 56 104-164 79-137 (742)
461 PF03237 Terminase_6: Terminas 81.3 4.5 9.8E-05 34.2 6.1 45 12-61 1-45 (384)
462 PRK08506 replicative DNA helic 81.3 2.4 5.1E-05 38.1 4.4 52 7-67 191-242 (472)
463 PRK14086 dnaA chromosomal repl 81.3 3.6 7.8E-05 38.1 5.6 47 10-63 316-362 (617)
464 TIGR00963 secA preprotein tran 81.3 7.8 0.00017 36.7 7.8 57 103-165 94-154 (745)
465 PRK04192 V-type ATP synthase s 81.2 39 0.00085 31.2 12.0 53 4-67 223-275 (586)
466 TIGR01313 therm_gnt_kin carboh 81.2 1.2 2.6E-05 33.4 2.2 21 11-32 1-21 (163)
467 PRK05595 replicative DNA helic 81.2 2.2 4.7E-05 37.9 4.1 57 7-71 200-256 (444)
468 KOG0060|consensus 81.1 0.91 2E-05 41.2 1.7 29 5-35 458-486 (659)
469 PRK09751 putative ATP-dependen 81.1 6 0.00013 40.5 7.5 72 105-180 36-130 (1490)
470 KOG1015|consensus 81.0 2.5 5.5E-05 40.8 4.5 52 11-67 699-750 (1567)
471 TIGR02236 recomb_radA DNA repa 81.0 3 6.4E-05 35.1 4.7 19 6-24 93-111 (310)
472 KOG1001|consensus 80.7 0.04 8.7E-07 51.1 -7.1 82 107-188 540-623 (674)
473 smart00450 RHOD Rhodanese Homo 80.6 3.3 7.2E-05 27.5 4.1 39 103-141 53-92 (100)
474 COG1126 GlnQ ABC-type polar am 80.5 1.4 3.1E-05 35.1 2.4 28 6-35 26-53 (240)
475 COG3972 Superfamily I DNA and 80.5 5.6 0.00012 35.8 6.2 55 6-67 175-229 (660)
476 KOG0326|consensus 80.4 3.6 7.9E-05 34.8 4.8 126 103-232 150-339 (459)
477 TIGR02928 orc1/cdc6 family rep 80.4 1.6 3.6E-05 37.3 3.0 26 8-34 40-65 (365)
478 PRK06904 replicative DNA helic 80.3 4.6 9.9E-05 36.3 5.9 58 7-72 220-277 (472)
479 PF01078 Mg_chelatase: Magnesi 80.2 1 2.2E-05 35.6 1.5 18 7-24 21-38 (206)
480 KOG0345|consensus 80.2 5.2 0.00011 35.6 5.9 69 108-179 81-162 (567)
481 PRK12422 chromosomal replicati 80.2 3.7 8E-05 36.6 5.2 45 9-62 142-186 (445)
482 TIGR02688 conserved hypothetic 80.0 0.69 1.5E-05 40.7 0.6 24 3-26 204-227 (449)
483 KOG4150|consensus 79.8 3 6.5E-05 38.1 4.4 175 2-187 295-501 (1034)
484 cd00032 CASc Caspase, interleu 79.8 25 0.00055 28.4 9.6 67 103-171 6-87 (243)
485 PHA02542 41 41 helicase; Provi 79.8 2.5 5.3E-05 38.0 4.0 50 7-65 189-238 (473)
486 PRK05922 type III secretion sy 79.8 39 0.00084 30.1 11.3 20 5-24 154-173 (434)
487 PHA02244 ATPase-like protein 79.8 1.8 3.9E-05 37.5 3.0 25 6-31 117-141 (383)
488 PF02456 Adeno_IVa2: Adenoviru 79.7 2.4 5.1E-05 35.7 3.5 44 11-60 90-133 (369)
489 KOG0736|consensus 79.7 8 0.00017 36.7 7.2 125 11-155 434-578 (953)
490 PF13871 Helicase_C_4: Helicas 79.7 10 0.00022 31.5 7.2 67 147-213 52-140 (278)
491 cd01529 4RHOD_Repeats Member o 79.6 4.5 9.7E-05 27.3 4.5 38 104-141 54-92 (96)
492 PRK13768 GTPase; Provisional 79.6 2.3 5E-05 34.7 3.5 23 11-34 5-27 (253)
493 PLN02165 adenylate isopentenyl 79.4 1.8 3.9E-05 36.9 2.8 25 8-33 43-67 (334)
494 TIGR02562 cas3_yersinia CRISPR 79.3 7.7 0.00017 38.1 7.2 69 110-179 760-860 (1110)
495 TIGR00750 lao LAO/AO transport 79.2 3.1 6.8E-05 34.9 4.3 28 6-34 32-59 (300)
496 cd02025 PanK Pantothenate kina 79.2 2.8 6E-05 33.5 3.8 20 13-33 4-23 (220)
497 PRK10078 ribose 1,5-bisphospho 79.2 1.2 2.6E-05 34.4 1.7 17 8-24 2-18 (186)
498 PRK08760 replicative DNA helic 79.1 5.2 0.00011 36.0 5.9 57 7-71 228-284 (476)
499 PRK05342 clpX ATP-dependent pr 79.1 1.3 2.9E-05 38.9 2.0 18 7-24 107-124 (412)
500 cd00046 DEXDc DEAD-like helica 79.1 17 0.00037 25.3 7.8 59 103-165 27-88 (144)
No 1
>KOG0330|consensus
Probab=100.00 E-value=1e-48 Score=321.41 Aligned_cols=220 Identities=28% Similarity=0.324 Sum_probs=193.6
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~g 78 (233)
|||.++.|+|+|+.|+||||||.+|++|++++++++ ...+++|||+||||||.|+.+.++.+ +.++++.++.|
T Consensus 91 aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~-----p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvG 165 (476)
T KOG0330|consen 91 AIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE-----PKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVG 165 (476)
T ss_pred hcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC-----CCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEec
Confidence 799999999999999999999999999999999986 34589999999999999999999999 56889999999
Q ss_pred CCCC---------CCeeEEe----------------ccc-----------------------------------------
Q psy14082 79 GTPK---------GPQDCLP----------------LHR----------------------------------------- 92 (233)
Q Consensus 79 g~~~---------~~~~lv~----------------l~r----------------------------------------- 92 (233)
|.+. +++++|| +++
T Consensus 166 G~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATM 245 (476)
T KOG0330|consen 166 GMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATM 245 (476)
T ss_pred CchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeec
Confidence 9765 7888888 000
Q ss_pred -------------------------hhhhchH----------------HHhcCCCCeEEEEecchhHHHHHHHHHhhCCC
Q psy14082 93 -------------------------FVFNCQY----------------EMAKNPAFKVIVFVETKKKVEDITRALRRERH 131 (233)
Q Consensus 93 -------------------------~~~~~~~----------------~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~ 131 (233)
.++-+.+ ++....+..+||||++...+++++-.|...|+
T Consensus 246 t~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~ 325 (476)
T KOG0330|consen 246 TKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGF 325 (476)
T ss_pred chhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCc
Confidence 0000000 44566778999999999999999999999999
Q ss_pred eeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------ceeeEEee
Q psy14082 132 SAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVIEVVQ 199 (233)
Q Consensus 132 ~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~~~~~ 199 (233)
.+..+||+|++..|...++.|++|...||||||+++||+|+|.||+|||||+|.+..+|| |.++++++
T Consensus 326 ~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVt 405 (476)
T KOG0330|consen 326 QAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVT 405 (476)
T ss_pred ceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999 46778999
Q ss_pred cchHHHHHHHHHHhhcCcccccccchhh
Q psy14082 200 DYEKEKRLFSLIRELGKYTLITQESSST 227 (233)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 227 (233)
+++ ..++..||...+..++..+...+
T Consensus 406 qyD--ve~~qrIE~~~gkkl~~~~~~~~ 431 (476)
T KOG0330|consen 406 QYD--VELVQRIEHALGKKLPEYKVDKN 431 (476)
T ss_pred hhh--hHHHHHHHHHHhcCCCccCcchH
Confidence 877 88999999988888877666554
No 2
>KOG0331|consensus
Probab=100.00 E-value=7.1e-48 Score=332.72 Aligned_cols=192 Identities=45% Similarity=0.722 Sum_probs=169.4
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhc-cCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh--cCCcEEEEE
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISH-QEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS--SALRNICIF 77 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~-~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~--~~~~~~~~~ 77 (233)
+||.++.|+|++++|.||||||++|++|++.++.. +....+.++|++|||+||||||.|+.+.+.++. ..+++.|++
T Consensus 121 ~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvy 200 (519)
T KOG0331|consen 121 GWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVY 200 (519)
T ss_pred ccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEe
Confidence 58999999999999999999999999999999997 555566779999999999999999999999994 456699999
Q ss_pred cCCCCCCee---------EEe---------------ccc-----------------------------------------
Q psy14082 78 GGTPKGPQD---------CLP---------------LHR----------------------------------------- 92 (233)
Q Consensus 78 gg~~~~~~~---------lv~---------------l~r----------------------------------------- 92 (233)
||.++.+|+ +|| |+|
T Consensus 201 GG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saT 280 (519)
T KOG0331|consen 201 GGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSAT 280 (519)
T ss_pred CCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeee
Confidence 999997776 666 111
Q ss_pred -----------------------------------hhhhchH------------HHhcCCCCeEEEEecchhHHHHHHHH
Q psy14082 93 -----------------------------------FVFNCQY------------EMAKNPAFKVIVFVETKKKVEDITRA 125 (233)
Q Consensus 93 -----------------------------------~~~~~~~------------~~~~~~~~k~iIf~~~~~~~~~l~~~ 125 (233)
++..|.. ......+.|+||||+|++.|+.++..
T Consensus 281 wp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~ 360 (519)
T KOG0331|consen 281 WPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARN 360 (519)
T ss_pred ccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHH
Confidence 2222211 11245778999999999999999999
Q ss_pred HhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCcccccc
Q psy14082 126 LRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNIS 192 (233)
Q Consensus 126 L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i~ 192 (233)
|+..++++..+||+.++.+|..+++.|++|...||||||+++||||+|+|++|||||+|.+.+.|||
T Consensus 361 l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVH 427 (519)
T KOG0331|consen 361 LRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVH 427 (519)
T ss_pred HHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999998883
No 3
>KOG0340|consensus
Probab=100.00 E-value=3.4e-43 Score=285.92 Aligned_cols=221 Identities=26% Similarity=0.337 Sum_probs=190.8
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~g 78 (233)
.||.++.|+|+|.+|.||||||++|++|+++++-+. ..|.-+||+.||||||.|+.++|..+ ..++++..++|
T Consensus 37 cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed-----P~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivG 111 (442)
T KOG0340|consen 37 CIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED-----PYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVG 111 (442)
T ss_pred hhHHHhcccccccccccCCCcchhhhHHHHHhhccC-----CCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEc
Confidence 389999999999999999999999999999999765 46889999999999999999999999 55789999999
Q ss_pred CCCC---------CCeeEEe-------------------ccc--------------------------------------
Q psy14082 79 GTPK---------GPQDCLP-------------------LHR-------------------------------------- 92 (233)
Q Consensus 79 g~~~---------~~~~lv~-------------------l~r-------------------------------------- 92 (233)
|.+. +++++|+ ++|
T Consensus 112 G~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfS 191 (442)
T KOG0340|consen 112 GTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFS 191 (442)
T ss_pred cHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccCCCccceEEEE
Confidence 9664 6667777 111
Q ss_pred --------------------------------------------------hhhhchHHHhcCCCCeEEEEecchhHHHHH
Q psy14082 93 --------------------------------------------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDI 122 (233)
Q Consensus 93 --------------------------------------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l 122 (233)
++..+. .+......-++||+++...++.+
T Consensus 192 ATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr-~~~~~~~~simIFvnttr~cQ~l 270 (442)
T KOG0340|consen 192 ATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLR-DFENKENGSIMIFVNTTRECQLL 270 (442)
T ss_pred eehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHh-hhhhccCceEEEEeehhHHHHHH
Confidence 111111 12222567899999999999999
Q ss_pred HHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc-----------
Q psy14082 123 TRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI----------- 191 (233)
Q Consensus 123 ~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i----------- 191 (233)
+..|+.+++.+..+||.|++++|...+.+|+++..+||+|||+++||+|+|.|++|||||+|.++..||
T Consensus 271 ~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR 350 (442)
T KOG0340|consen 271 SMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGR 350 (442)
T ss_pred HHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred -ceeeEEeecchHHHHHHHHHHhhcCcccccccchhhHh
Q psy14082 192 -SQVIEVVQDYEKEKRLFSLIRELGKYTLITQESSSTLS 229 (233)
Q Consensus 192 -~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 229 (233)
|.+++++++.+ .+++..||+..+.++.+.+....-.
T Consensus 351 ~G~aiSivt~rD--v~l~~aiE~~igkKl~e~~~~~~~~ 387 (442)
T KOG0340|consen 351 KGMAISIVTQRD--VELLQAIEEEIGKKLTEYNKVQRTV 387 (442)
T ss_pred CcceEEEechhh--HHHHHHHHHHHhcccccccccchhh
Confidence 56778999766 8899999998888887777655443
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-42 Score=306.08 Aligned_cols=214 Identities=30% Similarity=0.410 Sum_probs=176.6
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hc-CCcEEEEE
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SS-ALRNICIF 77 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~-~~~~~~~~ 77 (233)
|||.++.|+|++++|+||||||++|++|+++++.... . .....+|||+||||||.|+++.+..+ +. ++++.+++
T Consensus 59 ~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~--~-~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~ 135 (513)
T COG0513 59 AIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV--E-RKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVY 135 (513)
T ss_pred HHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc--c-cCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEE
Confidence 6899999999999999999999999999999987420 1 11112999999999999999999999 44 78999999
Q ss_pred cCCCC---------CCeeEEe--------ccc------------------------------------------------
Q psy14082 78 GGTPK---------GPQDCLP--------LHR------------------------------------------------ 92 (233)
Q Consensus 78 gg~~~---------~~~~lv~--------l~r------------------------------------------------ 92 (233)
||.+. .++++|| +.+
T Consensus 136 GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~ 215 (513)
T COG0513 136 GGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATM 215 (513)
T ss_pred CCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCC
Confidence 99876 3667888 000
Q ss_pred --------------------------------------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhh
Q psy14082 93 --------------------------------------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRR 128 (233)
Q Consensus 93 --------------------------------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~ 128 (233)
-...+..++......++||||+|+..++.++..|..
T Consensus 216 ~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~ 295 (513)
T COG0513 216 PDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRK 295 (513)
T ss_pred CHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 001111134444566899999999999999999999
Q ss_pred CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------ceeeE
Q psy14082 129 ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVIE 196 (233)
Q Consensus 129 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~~ 196 (233)
.|+++..+||+|++++|..+++.|++|+.+||||||+++||||+|+|++|||||+|.+++.|+ |.+++
T Consensus 296 ~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~ 375 (513)
T COG0513 296 RGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAIS 375 (513)
T ss_pred CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEE
Confidence 999999999999999999999999999999999999999999999999999999999999777 56777
Q ss_pred EeecchHHHHHHHHHHhhcCcc
Q psy14082 197 VVQDYEKEKRLFSLIRELGKYT 218 (233)
Q Consensus 197 ~~~~~~~~~~~~~~i~~~~~~~ 218 (233)
|+.+. .+...+..+++.....
T Consensus 376 fv~~~-~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 376 FVTEE-EEVKKLKRIEKRLERK 396 (513)
T ss_pred EeCcH-HHHHHHHHHHHHHhcc
Confidence 88863 2466667777655433
No 5
>KOG0328|consensus
Probab=100.00 E-value=5.6e-42 Score=271.67 Aligned_cols=221 Identities=26% Similarity=0.359 Sum_probs=181.0
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~g 78 (233)
|||+++.|+|||+||.+|+|||.+|.+.+++.+.-. .+..++|||+|||||+.|+.+.+..+ ..++.++.++|
T Consensus 57 Ai~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-----~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacig 131 (400)
T KOG0328|consen 57 AIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-----VRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIG 131 (400)
T ss_pred hhhhhhcccceEEEecCCCCceEEEEeeeeeecccc-----cceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEec
Confidence 799999999999999999999999999999877654 45688999999999999999999999 56889999999
Q ss_pred CCCCCCee---------EEe--------ccc-------------------------------------------------
Q psy14082 79 GTPKGPQD---------CLP--------LHR------------------------------------------------- 92 (233)
Q Consensus 79 g~~~~~~~---------lv~--------l~r------------------------------------------------- 92 (233)
|.+..+++ +.| ++|
T Consensus 132 g~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp 211 (400)
T KOG0328|consen 132 GKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLP 211 (400)
T ss_pred CCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCc
Confidence 98854433 333 111
Q ss_pred --------------------------------hhhhchH---------HHhcCCCCeEEEEecchhHHHHHHHHHhhCCC
Q psy14082 93 --------------------------------FVFNCQY---------EMAKNPAFKVIVFVETKKKVEDITRALRRERH 131 (233)
Q Consensus 93 --------------------------------~~~~~~~---------~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~ 131 (233)
++.+-.+ +...-.-.+.+|||||+..++++.+.|++.++
T Consensus 212 ~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nf 291 (400)
T KOG0328|consen 212 HEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANF 291 (400)
T ss_pred HHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCc
Confidence 1111000 22333456899999999999999999999999
Q ss_pred eeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------ceeeEEee
Q psy14082 132 SAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVIEVVQ 199 (233)
Q Consensus 132 ~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~~~~~ 199 (233)
.+..+||+|++++|.+++++|++|+.++|++||+-+||+|+|.|++|||||+|.+.+.|| |-++.|+.
T Consensus 292 tVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk 371 (400)
T KOG0328|consen 292 TVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK 371 (400)
T ss_pred eeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEec
Confidence 999999999999999999999999999999999999999999999999999999998666 35566777
Q ss_pred cchHHHHHHHHHHhhcCcccccccchhhHhh
Q psy14082 200 DYEKEKRLFSLIRELGKYTLITQESSSTLSE 230 (233)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 230 (233)
+. +.+.+..++++.+..+ .+.|-+..+
T Consensus 372 ~~--d~~~lrdieq~yst~i--~emp~nvad 398 (400)
T KOG0328|consen 372 SD--DLRILRDIEQYYSTQI--DEMPMNVAD 398 (400)
T ss_pred HH--HHHHHHHHHHHHhhhc--ccccchhhh
Confidence 54 4888888888775533 344444433
No 6
>KOG0338|consensus
Probab=100.00 E-value=5.2e-42 Score=290.07 Aligned_cols=210 Identities=26% Similarity=0.330 Sum_probs=182.8
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~g 78 (233)
.||..+-|+|+.++|.||||||+||++|++++++..+.. -..-|+|||||||||+.|+|+..+++ |.++.+++.+|
T Consensus 211 ~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~--~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vG 288 (691)
T KOG0338|consen 211 TIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK--VAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVG 288 (691)
T ss_pred cccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc--CcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeec
Confidence 389999999999999999999999999999999986432 34678999999999999999999999 88999999999
Q ss_pred CCCC---------CCeeEEe--------ccc-------------------------------hhhhchH-----------
Q psy14082 79 GTPK---------GPQDCLP--------LHR-------------------------------FVFNCQY----------- 99 (233)
Q Consensus 79 g~~~---------~~~~lv~--------l~r-------------------------------~~~~~~~----------- 99 (233)
|.+- .|+|+|| |+. ++.+|.+
T Consensus 289 GL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATM 368 (691)
T KOG0338|consen 289 GLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATM 368 (691)
T ss_pred CccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhh
Confidence 9875 5677888 111 2222222
Q ss_pred ---------------------------------------------------HHhcCCCCeEEEEecchhHHHHHHHHHhh
Q psy14082 100 ---------------------------------------------------EMAKNPAFKVIVFVETKKKVEDITRALRR 128 (233)
Q Consensus 100 ---------------------------------------------------~~~~~~~~k~iIf~~~~~~~~~l~~~L~~ 128 (233)
++.+....+++||+.|++.++.+.-.|--
T Consensus 369 teeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGL 448 (691)
T KOG0338|consen 369 TEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGL 448 (691)
T ss_pred HHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHH
Confidence 33445678899999999999999999999
Q ss_pred CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------ceeeE
Q psy14082 129 ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVIE 196 (233)
Q Consensus 129 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~~ 196 (233)
+|+++.-+||.+++.+|.+.++.|+++++++|||||+++||+|+++|..||||++|.+.++|+ |++++
T Consensus 449 lgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVt 528 (691)
T KOG0338|consen 449 LGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVT 528 (691)
T ss_pred hhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEE
Confidence 999999999999999999999999999999999999999999999999999999999999999 68888
Q ss_pred EeecchHHHHHHHHHHhh
Q psy14082 197 VVQDYEKEKRLFSLIREL 214 (233)
Q Consensus 197 ~~~~~~~~~~~~~~i~~~ 214 (233)
|+.+.+ +++++.+-+.
T Consensus 529 lvgE~d--RkllK~iik~ 544 (691)
T KOG0338|consen 529 LVGESD--RKLLKEIIKS 544 (691)
T ss_pred Eecccc--HHHHHHHHhh
Confidence 999655 7777777654
No 7
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.7e-41 Score=293.20 Aligned_cols=219 Identities=25% Similarity=0.273 Sum_probs=180.0
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCC--CCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEE
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPV--KQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICI 76 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~--~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~ 76 (233)
|||.++.|+|++++||||||||++|++|++++++..+.. ....++++|||+||||||.|+++.+..+ ..++++..+
T Consensus 38 aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~ 117 (423)
T PRK04837 38 ALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLA 117 (423)
T ss_pred HHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEE
Confidence 589999999999999999999999999999999865321 1234689999999999999999999998 457889999
Q ss_pred EcCCCC---------CCeeEEe---------------ccc----------------------------------------
Q psy14082 77 FGGTPK---------GPQDCLP---------------LHR---------------------------------------- 92 (233)
Q Consensus 77 ~gg~~~---------~~~~lv~---------------l~r---------------------------------------- 92 (233)
+||.+. ..+++|+ +.+
T Consensus 118 ~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~S 197 (423)
T PRK04837 118 YGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFS 197 (423)
T ss_pred ECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEe
Confidence 998653 3467777 000
Q ss_pred --------------------------------------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhh
Q psy14082 93 --------------------------------------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRR 128 (233)
Q Consensus 93 --------------------------------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~ 128 (233)
....+...+......++||||++++.++.++..|..
T Consensus 198 AT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~ 277 (423)
T PRK04837 198 ATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAA 277 (423)
T ss_pred ccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHh
Confidence 000001123344568999999999999999999999
Q ss_pred CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------ceeeE
Q psy14082 129 ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVIE 196 (233)
Q Consensus 129 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~~ 196 (233)
.|+++..+||+|++++|..++++|++|++++|||||+++||+|+|++++|||||+|.+.+.|+ |.++.
T Consensus 278 ~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~ 357 (423)
T PRK04837 278 DGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSIS 357 (423)
T ss_pred CCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEE
Confidence 999999999999999999999999999999999999999999999999999999999999887 34566
Q ss_pred EeecchHHHHHHHHHHhhcCccccc
Q psy14082 197 VVQDYEKEKRLFSLIRELGKYTLIT 221 (233)
Q Consensus 197 ~~~~~~~~~~~~~~i~~~~~~~~~~ 221 (233)
|+.+++ ...+..+++..+..++.
T Consensus 358 ~~~~~~--~~~~~~i~~~~~~~~~~ 380 (423)
T PRK04837 358 LACEEY--ALNLPAIETYIGHSIPV 380 (423)
T ss_pred EeCHHH--HHHHHHHHHHhCCCCCC
Confidence 787644 66677777766655543
No 8
>KOG0342|consensus
Probab=100.00 E-value=7.3e-41 Score=282.06 Aligned_cols=220 Identities=26% Similarity=0.306 Sum_probs=184.1
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hc-CCcEEEEE
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SS-ALRNICIF 77 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~-~~~~~~~~ 77 (233)
.||+++.|+|+++.|.||||||+||++|+++.+...+... +++..++|+|||||||.|++.+.+++ +. .+.+..++
T Consensus 112 ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~-r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~vi 190 (543)
T KOG0342|consen 112 TIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP-RNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVI 190 (543)
T ss_pred hcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC-CCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEe
Confidence 4899999999999999999999999999999999875444 37889999999999999999999999 44 88999999
Q ss_pred cCCCC---------CCeeEEe--------c-------------------------------cc-----------------
Q psy14082 78 GGTPK---------GPQDCLP--------L-------------------------------HR----------------- 92 (233)
Q Consensus 78 gg~~~---------~~~~lv~--------l-------------------------------~r----------------- 92 (233)
||.+. ..+++|| | .+
T Consensus 191 GG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT 270 (543)
T KOG0342|consen 191 GGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSAT 270 (543)
T ss_pred CCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCC
Confidence 99775 4566787 0 00
Q ss_pred ------------------hhhhc---------------------------hHHHhcCCC-CeEEEEecchhHHHHHHHHH
Q psy14082 93 ------------------FVFNC---------------------------QYEMAKNPA-FKVIVFVETKKKVEDITRAL 126 (233)
Q Consensus 93 ------------------~~~~~---------------------------~~~~~~~~~-~k~iIf~~~~~~~~~l~~~L 126 (233)
+++.. -..+.++.. .|+||||+|...+..+++.|
T Consensus 271 ~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL 350 (543)
T KOG0342|consen 271 QPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELL 350 (543)
T ss_pred CcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHH
Confidence 00000 003344444 89999999999999999999
Q ss_pred hhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCcccccc------------ee
Q psy14082 127 RRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNIS------------QV 194 (233)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i~------------~~ 194 (233)
....++|..+||++++..|..+..+|++.+..||||||+.+||+|+|+|+|||+||+|.++++||| .+
T Consensus 351 ~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~a 430 (543)
T KOG0342|consen 351 NYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKA 430 (543)
T ss_pred hhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceE
Confidence 999999999999999999999999999999999999999999999999999999999999999994 44
Q ss_pred eEEeecchHHHHHHHHHHhhcCccccccc
Q psy14082 195 IEVVQDYEKEKRLFSLIRELGKYTLITQE 223 (233)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 223 (233)
+.++.+ ++..++..+++.--.++++.+
T Consensus 431 lL~l~p--~El~Flr~LK~lpl~~~e~~~ 457 (543)
T KOG0342|consen 431 LLLLAP--WELGFLRYLKKLPLEEFEFPP 457 (543)
T ss_pred EEEeCh--hHHHHHHHHhhCCCcccCCCC
Confidence 556664 458899999875544444444
No 9
>KOG0333|consensus
Probab=100.00 E-value=1.2e-40 Score=282.54 Aligned_cols=202 Identities=29% Similarity=0.432 Sum_probs=174.9
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCC----CCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEE
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPV----KQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNI 74 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~----~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~ 74 (233)
|||..+..+|+|..|.||||||++|++|++..+...++. +...||+++||+|||||++|+.+.-.+| ..++++.
T Consensus 275 aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~v 354 (673)
T KOG0333|consen 275 AIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTV 354 (673)
T ss_pred hccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEE
Confidence 789999999999999999999999999999999877543 2356999999999999999999999999 5568999
Q ss_pred EEEcCCCCCCe---------eEEe--------ccc---------------------------------------------
Q psy14082 75 CIFGGTPKGPQ---------DCLP--------LHR--------------------------------------------- 92 (233)
Q Consensus 75 ~~~gg~~~~~~---------~lv~--------l~r--------------------------------------------- 92 (233)
.++||.+..+| ++|| |.+
T Consensus 355 svigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~td 434 (673)
T KOG0333|consen 355 SVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTD 434 (673)
T ss_pred EEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCcc
Confidence 99999876544 4666 000
Q ss_pred ---------------------------------------------------------------------hhhhchHHHhc
Q psy14082 93 ---------------------------------------------------------------------FVFNCQYEMAK 103 (233)
Q Consensus 93 ---------------------------------------------------------------------~~~~~~~~~~~ 103 (233)
-.+-+.+.+.+
T Consensus 435 e~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~ 514 (673)
T KOG0333|consen 435 EKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILES 514 (673)
T ss_pred chhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHh
Confidence 01111114556
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSL 183 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~ 183 (233)
+...++|||+|+++.++.+++.|.+.|+++..+||+.++++|+.+++.|++|..+||||||+++||+|+|+|.+||||||
T Consensus 515 ~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydm 594 (673)
T KOG0333|consen 515 NFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDM 594 (673)
T ss_pred CCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecch
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccc------------ceeeEEeecch
Q psy14082 184 QLSANHNI------------SQVIEVVQDYE 202 (233)
Q Consensus 184 P~~~~~~i------------~~~~~~~~~~~ 202 (233)
++|++.|+ |.+++|+++.+
T Consensus 595 aksieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 595 AKSIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred hhhHHHHHHHhccccccccCceeEEEeccch
Confidence 99998666 57788999755
No 10
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2e-40 Score=296.76 Aligned_cols=202 Identities=40% Similarity=0.616 Sum_probs=168.7
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~g 78 (233)
|||.+++|+|++++||||||||++|++|++.+++.++......++++|||+||||||.|+++.+++| ..++++.+++|
T Consensus 160 aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~g 239 (545)
T PTZ00110 160 GWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYG 239 (545)
T ss_pred HHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeC
Confidence 5899999999999999999999999999999988764444456899999999999999999999999 44678899999
Q ss_pred CCCC---------CCeeEEe---------------ccc-----------------------h------------------
Q psy14082 79 GTPK---------GPQDCLP---------------LHR-----------------------F------------------ 93 (233)
Q Consensus 79 g~~~---------~~~~lv~---------------l~r-----------------------~------------------ 93 (233)
|.+. ..+++|+ ++| +
T Consensus 240 g~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p 319 (545)
T PTZ00110 240 GVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWP 319 (545)
T ss_pred CCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCC
Confidence 9765 2456776 000 0
Q ss_pred ----------h------------------------hhc---------hHHHhc--CCCCeEEEEecchhHHHHHHHHHhh
Q psy14082 94 ----------V------------------------FNC---------QYEMAK--NPAFKVIVFVETKKKVEDITRALRR 128 (233)
Q Consensus 94 ----------~------------------------~~~---------~~~~~~--~~~~k~iIf~~~~~~~~~l~~~L~~ 128 (233)
. ..+ .+.+.. ....++||||++++.++.++..|..
T Consensus 320 ~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~ 399 (545)
T PTZ00110 320 KEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRL 399 (545)
T ss_pred HHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHH
Confidence 0 000 001111 1567999999999999999999999
Q ss_pred CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------ceeeE
Q psy14082 129 ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVIE 196 (233)
Q Consensus 129 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~~ 196 (233)
.++.+..+||+|++++|..++++|++|+.+||||||+++||+|+|++++|||||+|.+.+.|+ |.++.
T Consensus 400 ~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~ 479 (545)
T PTZ00110 400 DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYT 479 (545)
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEE
Confidence 999999999999999999999999999999999999999999999999999999999998776 35566
Q ss_pred Eeecch
Q psy14082 197 VVQDYE 202 (233)
Q Consensus 197 ~~~~~~ 202 (233)
|+++.+
T Consensus 480 ~~~~~~ 485 (545)
T PTZ00110 480 FLTPDK 485 (545)
T ss_pred EECcch
Confidence 777644
No 11
>KOG0345|consensus
Probab=100.00 E-value=3.1e-39 Score=270.91 Aligned_cols=192 Identities=28% Similarity=0.331 Sum_probs=164.5
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh---hcCCcEEEEE
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF---SSALRNICIF 77 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~---~~~~~~~~~~ 77 (233)
+||.+++++||.+.|+||||||+||++|+++.+.......+.....+|||+|||||+.||++.+..| ..++++.+++
T Consensus 36 tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~v 115 (567)
T KOG0345|consen 36 TIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLV 115 (567)
T ss_pred hhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEe
Confidence 5899999999999999999999999999999997654444444678999999999999999999999 5789999999
Q ss_pred cCCCC----------CCeeEEe--------ccc-----------------------------------------------
Q psy14082 78 GGTPK----------GPQDCLP--------LHR----------------------------------------------- 92 (233)
Q Consensus 78 gg~~~----------~~~~lv~--------l~r----------------------------------------------- 92 (233)
||.+. .++++|| ++|
T Consensus 116 GG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFS 195 (567)
T KOG0345|consen 116 GGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFS 195 (567)
T ss_pred cCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHHHhccccccccccc
Confidence 99665 4566888 111
Q ss_pred ----------------------------------------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHH
Q psy14082 93 ----------------------------------------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRAL 126 (233)
Q Consensus 93 ----------------------------------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L 126 (233)
-...+-+.+......|+|||++|...++.....+
T Consensus 196 ATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~ 275 (567)
T KOG0345|consen 196 ATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLF 275 (567)
T ss_pred chhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHH
Confidence 1111112556678899999999999999999998
Q ss_pred hhC--CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCcccccc
Q psy14082 127 RRE--RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNIS 192 (233)
Q Consensus 127 ~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i~ 192 (233)
... +.....+||.|+++.|..++.+|++....+|+|||+++||+|+|++|+||+||+|.+++.++|
T Consensus 276 ~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvH 343 (567)
T KOG0345|consen 276 SRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVH 343 (567)
T ss_pred HHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHh
Confidence 765 678899999999999999999999988889999999999999999999999999999986663
No 12
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.2e-39 Score=290.17 Aligned_cols=218 Identities=27% Similarity=0.355 Sum_probs=177.6
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCC--CCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEE
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPV--KQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICI 76 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~--~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~ 76 (233)
+||.++.|+|++++||||||||++|++|++++++..+.. ....++++|||+||+||+.|+++.+..+ ..++++..+
T Consensus 39 ~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l 118 (572)
T PRK04537 39 TLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALV 118 (572)
T ss_pred HHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEE
Confidence 589999999999999999999999999999999764321 1123689999999999999999999999 446789999
Q ss_pred EcCCCC---------CCeeEEe--------ccc-----------------------------------------------
Q psy14082 77 FGGTPK---------GPQDCLP--------LHR----------------------------------------------- 92 (233)
Q Consensus 77 ~gg~~~---------~~~~lv~--------l~r----------------------------------------------- 92 (233)
+||.+. ..+++|+ +.+
T Consensus 119 ~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~ 198 (572)
T PRK04537 119 YGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLF 198 (572)
T ss_pred ECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEE
Confidence 999765 2456777 000
Q ss_pred ---------------------------------------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHh
Q psy14082 93 ---------------------------------------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALR 127 (233)
Q Consensus 93 ---------------------------------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~ 127 (233)
.+..+..++....+.++||||++++.++.+++.|.
T Consensus 199 SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~ 278 (572)
T PRK04537 199 SATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLE 278 (572)
T ss_pred eCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHH
Confidence 00000013344567899999999999999999999
Q ss_pred hCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------ceee
Q psy14082 128 RERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVI 195 (233)
Q Consensus 128 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~ 195 (233)
+.++.+..+||+|++.+|..+++.|++|+.+||||||++++|+|+|++++|||||+|.+.+.|+ |.++
T Consensus 279 ~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai 358 (572)
T PRK04537 279 RHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI 358 (572)
T ss_pred HcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEE
Confidence 9999999999999999999999999999999999999999999999999999999999998777 3455
Q ss_pred EEeecchHHHHHHHHHHhhcCcccc
Q psy14082 196 EVVQDYEKEKRLFSLIRELGKYTLI 220 (233)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~~~~~~~~ 220 (233)
.|+.+.+ ...+..+++..+.+++
T Consensus 359 ~~~~~~~--~~~l~~i~~~~~~~~~ 381 (572)
T PRK04537 359 SFACERY--AMSLPDIEAYIEQKIP 381 (572)
T ss_pred EEecHHH--HHHHHHHHHHHcCCCC
Confidence 5777543 5567777776555443
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=4.1e-39 Score=283.69 Aligned_cols=217 Identities=28% Similarity=0.400 Sum_probs=177.6
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCC-CCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEE
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPV-KQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIF 77 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~-~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~ 77 (233)
|||.++.|+|++++||||||||++|++|+++.+...... .....+++|||+||||||.|+++.++.+ ..++++..++
T Consensus 31 ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~ 110 (456)
T PRK10590 31 AIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVF 110 (456)
T ss_pred HHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 578899999999999999999999999999998764321 1234568999999999999999999998 4567888899
Q ss_pred cCCCC---------CCeeEEe---------------ccc-----------------------------------------
Q psy14082 78 GGTPK---------GPQDCLP---------------LHR----------------------------------------- 92 (233)
Q Consensus 78 gg~~~---------~~~~lv~---------------l~r----------------------------------------- 92 (233)
||.+. ..+++|+ +++
T Consensus 111 gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~ 190 (456)
T PRK10590 111 GGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATF 190 (456)
T ss_pred CCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCC
Confidence 98764 3456777 000
Q ss_pred -----------------------------------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCC
Q psy14082 93 -----------------------------------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERH 131 (233)
Q Consensus 93 -----------------------------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~ 131 (233)
...++...+......++||||++++.++.+++.|.+.++
T Consensus 191 ~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~ 270 (456)
T PRK10590 191 SDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGI 270 (456)
T ss_pred cHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCC
Confidence 000011123344567999999999999999999999999
Q ss_pred eeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------ceeeEEee
Q psy14082 132 SAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVIEVVQ 199 (233)
Q Consensus 132 ~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~~~~~ 199 (233)
.+..+||+|++.+|..++++|++|+.+||||||++++|+|+|++++|||||+|.+...|+ |.++.++.
T Consensus 271 ~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~ 350 (456)
T PRK10590 271 RSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVC 350 (456)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEec
Confidence 999999999999999999999999999999999999999999999999999999998777 35566777
Q ss_pred cchHHHHHHHHHHhhcCccc
Q psy14082 200 DYEKEKRLFSLIRELGKYTL 219 (233)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~ 219 (233)
..+ ..+++.+++..+.++
T Consensus 351 ~~d--~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 351 VDE--HKLLRDIEKLLKKEI 368 (456)
T ss_pred HHH--HHHHHHHHHHhcCCC
Confidence 544 777888888665554
No 14
>KOG0326|consensus
Probab=100.00 E-value=2.5e-40 Score=266.29 Aligned_cols=212 Identities=25% Similarity=0.310 Sum_probs=179.4
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~g 78 (233)
+||.++.|+|+++-|..|+|||.+|.+|+++++... +...+++|++||||||.|+.+.++++ ..++++...+|
T Consensus 115 sIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-----~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttG 189 (459)
T KOG0326|consen 115 SIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK-----KNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTG 189 (459)
T ss_pred ccceeecchhhhhhccCCCCCccceechhhhhcCcc-----ccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecC
Confidence 689999999999999999999999999999999865 56889999999999999999999999 45788999999
Q ss_pred CCCCCCee---------EEe-ccc--------------------------------------------------------
Q psy14082 79 GTPKGPQD---------CLP-LHR-------------------------------------------------------- 92 (233)
Q Consensus 79 g~~~~~~~---------lv~-l~r-------------------------------------------------------- 92 (233)
|++.+.++ +|| -.|
T Consensus 190 GT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP 269 (459)
T KOG0326|consen 190 GTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFP 269 (459)
T ss_pred CcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccc
Confidence 99987666 555 011
Q ss_pred ---------------------------------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCCee
Q psy14082 93 ---------------------------------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERHSA 133 (233)
Q Consensus 93 ---------------------------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~ 133 (233)
.+.....++.+-.-.+.|||||+.+.++.+++.+.+.|++|
T Consensus 270 ~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGysc 349 (459)
T KOG0326|consen 270 LTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSC 349 (459)
T ss_pred hhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchh
Confidence 11111115666677899999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------ceeeEEeecc
Q psy14082 134 ICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVIEVVQDY 201 (233)
Q Consensus 134 ~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~~~~~~~ 201 (233)
.++|+.|-+++|..++.+|++|.++.|||||.+.||+|+++|++|||||+|.+++.|. |-++.+++-.
T Consensus 350 yyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLitye 429 (459)
T KOG0326|consen 350 YYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYE 429 (459)
T ss_pred hHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehh
Confidence 9999999999999999999999999999999999999999999999999999998555 3455666643
Q ss_pred hHHHHHHHHHHhhcCccc
Q psy14082 202 EKEKRLFSLIRELGKYTL 219 (233)
Q Consensus 202 ~~~~~~~~~i~~~~~~~~ 219 (233)
+ +.-+..||+..+.++
T Consensus 430 d--rf~L~~IE~eLGtEI 445 (459)
T KOG0326|consen 430 D--RFNLYRIEQELGTEI 445 (459)
T ss_pred h--hhhHHHHHHHhcccc
Confidence 3 555666776555444
No 15
>KOG0335|consensus
Probab=100.00 E-value=4.2e-39 Score=274.39 Aligned_cols=215 Identities=31% Similarity=0.463 Sum_probs=173.7
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCC-----CCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcE
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQ-----GDGPIALVLAPTRELAQQIQTVAKEF--SSALRN 73 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~-----~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~ 73 (233)
+||.+..|+|++++|+||||||.+|++|++.+++......+ ...|++|||+||||||.|+|++.+++ ...+++
T Consensus 104 sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~ 183 (482)
T KOG0335|consen 104 SIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKS 183 (482)
T ss_pred ccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhccccccee
Confidence 68999999999999999999999999999999997643211 13699999999999999999999999 557899
Q ss_pred EEEEcCCCCC---------CeeEEe---------------------------------------ccc-------------
Q psy14082 74 ICIFGGTPKG---------PQDCLP---------------------------------------LHR------------- 92 (233)
Q Consensus 74 ~~~~gg~~~~---------~~~lv~---------------------------------------l~r------------- 92 (233)
...|||.+.. .+++|+ +++
T Consensus 184 ~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~ 263 (482)
T KOG0335|consen 184 VVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNR 263 (482)
T ss_pred eeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccce
Confidence 9999996653 334666 000
Q ss_pred ---------------------------------------------------hhhhchHHHhcC----CC-----CeEEEE
Q psy14082 93 ---------------------------------------------------FVFNCQYEMAKN----PA-----FKVIVF 112 (233)
Q Consensus 93 ---------------------------------------------------~~~~~~~~~~~~----~~-----~k~iIf 112 (233)
..+.+.+++... .. .+++||
T Consensus 264 qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvF 343 (482)
T KOG0335|consen 264 QTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVF 343 (482)
T ss_pred eEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEE
Confidence 000000022111 12 389999
Q ss_pred ecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc-
Q psy14082 113 VETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI- 191 (233)
Q Consensus 113 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i- 191 (233)
|+|++.+..++..|...++++..+||+-++.+|.+.++.|++|...+||||++++||+|+|+|++|||||+|.+.++|+
T Consensus 344 vEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvH 423 (482)
T KOG0335|consen 344 VETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVH 423 (482)
T ss_pred eeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred -----------ceeeEEeecch--HHHHHHHHHHhhc
Q psy14082 192 -----------SQVIEVVQDYE--KEKRLFSLIRELG 215 (233)
Q Consensus 192 -----------~~~~~~~~~~~--~~~~~~~~i~~~~ 215 (233)
|+++.|+.+.. --+.+.+.+.+.+
T Consensus 424 RIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~ 460 (482)
T KOG0335|consen 424 RIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEAN 460 (482)
T ss_pred hccccccCCCCceeEEEeccccchhHHHHHHHHHHhc
Confidence 46667887333 3344555555544
No 16
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.2e-38 Score=281.27 Aligned_cols=213 Identities=27% Similarity=0.355 Sum_probs=175.5
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh---cCCcEEEEE
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS---SALRNICIF 77 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~---~~~~~~~~~ 77 (233)
|||.++.|+|++++||||||||++|++|+++++... ..++++|||+||||||.|+++.++.+. .++++..++
T Consensus 34 ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~-----~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~ 108 (460)
T PRK11776 34 SLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK-----RFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLC 108 (460)
T ss_pred HHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc-----cCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEE
Confidence 578899999999999999999999999999998643 346789999999999999999999883 478899999
Q ss_pred cCCCC---------CCeeEEe--------ccc------------------------------------------------
Q psy14082 78 GGTPK---------GPQDCLP--------LHR------------------------------------------------ 92 (233)
Q Consensus 78 gg~~~---------~~~~lv~--------l~r------------------------------------------------ 92 (233)
||.+. ..+++|+ +.+
T Consensus 109 Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~ 188 (460)
T PRK11776 109 GGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATY 188 (460)
T ss_pred CCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecC
Confidence 99765 3456666 000
Q ss_pred ----------------------------------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCCe
Q psy14082 93 ----------------------------------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERHS 132 (233)
Q Consensus 93 ----------------------------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~ 132 (233)
....+...+......++||||++++.++.+++.|.+.++.
T Consensus 189 ~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~ 268 (460)
T PRK11776 189 PEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFS 268 (460)
T ss_pred cHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCc
Confidence 0000111334456678999999999999999999999999
Q ss_pred eEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------ceeeEEeec
Q psy14082 133 AICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVIEVVQD 200 (233)
Q Consensus 133 ~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~~~~~~ 200 (233)
+..+||+|++.+|..+++.|++|+.++|||||+++||+|+|++++|||||+|.+.+.|+ |.++.++.+
T Consensus 269 v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~ 348 (460)
T PRK11776 269 ALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAP 348 (460)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEch
Confidence 99999999999999999999999999999999999999999999999999999998777 345557765
Q ss_pred chHHHHHHHHHHhhcCcccc
Q psy14082 201 YEKEKRLFSLIRELGKYTLI 220 (233)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~~~ 220 (233)
.+ ...++.+++..+..++
T Consensus 349 ~e--~~~~~~i~~~~~~~~~ 366 (460)
T PRK11776 349 EE--MQRANAIEDYLGRKLN 366 (460)
T ss_pred hH--HHHHHHHHHHhCCCCc
Confidence 44 6667777776555443
No 17
>KOG0343|consensus
Probab=100.00 E-value=8.3e-40 Score=278.96 Aligned_cols=195 Identities=25% Similarity=0.248 Sum_probs=169.4
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~g 78 (233)
+||.++.|+|+++.|.||||||+||++|++++|...++ .+..|.-||||+||||||.|+++.+.+. +..+++.+++|
T Consensus 99 ~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kW-s~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiG 177 (758)
T KOG0343|consen 99 TIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKW-SPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIG 177 (758)
T ss_pred hcchhccCcccccccccCCCceeeehHHHHHHHHHcCC-CCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeec
Confidence 58999999999999999999999999999999998744 3456899999999999999999999999 67899999999
Q ss_pred CCCC--------CCeeEEe-----cc----------------------c-------------------------------
Q psy14082 79 GTPK--------GPQDCLP-----LH----------------------R------------------------------- 92 (233)
Q Consensus 79 g~~~--------~~~~lv~-----l~----------------------r------------------------------- 92 (233)
|.+. +-.|+|+ |. |
T Consensus 178 G~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt 257 (758)
T KOG0343|consen 178 GKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQT 257 (758)
T ss_pred CchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccc
Confidence 9775 2334666 00 0
Q ss_pred ------------------------------------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhC-
Q psy14082 93 ------------------------------------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRE- 129 (233)
Q Consensus 93 ------------------------------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~- 129 (233)
-++++-..+..+...+.|||+.|.+.+..++..+.++
T Consensus 258 ~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlr 337 (758)
T KOG0343|consen 258 KSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLR 337 (758)
T ss_pred hhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcC
Confidence 1111111457788899999999999999999999876
Q ss_pred -CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCcccccceeeE
Q psy14082 130 -RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNISQVIE 196 (233)
Q Consensus 130 -~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i~~~~~ 196 (233)
|++...+||.|++..|.+++.+|.....-||+|||+++||+|+|.|||||+||-|.+.+.||||+++
T Consensus 338 pg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGR 405 (758)
T KOG0343|consen 338 PGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGR 405 (758)
T ss_pred CCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhh
Confidence 7899999999999999999999999999999999999999999999999999999999999965554
No 18
>KOG0348|consensus
Probab=100.00 E-value=2.3e-38 Score=269.24 Aligned_cols=215 Identities=23% Similarity=0.311 Sum_probs=174.8
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccC-CCCCCCCceEEEEcCcHHHHHHHHHHHHHh---hcCCcEEEE
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQE-PVKQGDGPIALVLAPTRELAQQIQTVAKEF---SSALRNICI 76 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~-~~~~~~~~~~lil~PtreL~~Q~~~~~~~~---~~~~~~~~~ 76 (233)
|||.++.|+|+++-|+||||||++|++|+++.+...+ +..+..|+.|||||||||||.|+|+.++++ +.=+-.+.+
T Consensus 167 ~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~l 246 (708)
T KOG0348|consen 167 AIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVL 246 (708)
T ss_pred chhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeecee
Confidence 6999999999999999999999999999999999764 345578999999999999999999999999 334456788
Q ss_pred EcCCCCC---------CeeEEe----------------ccc---------------------------------------
Q psy14082 77 FGGTPKG---------PQDCLP----------------LHR--------------------------------------- 92 (233)
Q Consensus 77 ~gg~~~~---------~~~lv~----------------l~r--------------------------------------- 92 (233)
.||.+++ -.|+|| +.|
T Consensus 247 mGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~ 326 (708)
T KOG0348|consen 247 MGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDP 326 (708)
T ss_pred ecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccc
Confidence 8887652 234777 000
Q ss_pred --------------------------------------------------------------------------------
Q psy14082 93 -------------------------------------------------------------------------------- 92 (233)
Q Consensus 93 -------------------------------------------------------------------------------- 92 (233)
T Consensus 327 ~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpK 406 (708)
T KOG0348|consen 327 KLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPK 406 (708)
T ss_pred cccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCc
Confidence
Q ss_pred -----hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhC----------------------CCeeEEEeCCCCHHHH
Q psy14082 93 -----FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRE----------------------RHSAICIHGDKTQQDR 145 (233)
Q Consensus 93 -----~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~----------------------~~~~~~~~~~~~~~~r 145 (233)
+..++.+.+......|+|||+.+.+.++.-+..|.+. +.+..-+||+|++++|
T Consensus 407 LRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeR 486 (708)
T KOG0348|consen 407 LRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEER 486 (708)
T ss_pred hhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHH
Confidence 1111111344556679999999999999888887631 3467889999999999
Q ss_pred HHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------ceeeEEeecchHHHHHHHHHHh
Q psy14082 146 DYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVIEVVQDYEKEKRLFSLIRE 213 (233)
Q Consensus 146 ~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~~~~~~~~~~~~~~~~i~~ 213 (233)
..+++.|+...--||.|||+++||+|+|+|++||+||.|.++++|+ |.++.|..+.| ...++.++.
T Consensus 487 ts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~E--aey~~~l~~ 564 (708)
T KOG0348|consen 487 TSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSE--AEYVNYLKK 564 (708)
T ss_pred HHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccH--HHHHHHHHh
Confidence 9999999999888999999999999999999999999999999888 56677888766 447777776
Q ss_pred hcCc
Q psy14082 214 LGKY 217 (233)
Q Consensus 214 ~~~~ 217 (233)
....
T Consensus 565 ~~~~ 568 (708)
T KOG0348|consen 565 HHIM 568 (708)
T ss_pred hcch
Confidence 5433
No 19
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.2e-38 Score=286.60 Aligned_cols=216 Identities=28% Similarity=0.401 Sum_probs=179.9
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh---hcCCcEEEEE
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF---SSALRNICIF 77 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~---~~~~~~~~~~ 77 (233)
+||.++.|+|++++||||||||++|++|+++.+... ..++++|||+||+|||.|+++.+..+ ..++++..++
T Consensus 36 ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-----~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~ 110 (629)
T PRK11634 36 CIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-----LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALY 110 (629)
T ss_pred HHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----cCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEE
Confidence 478899999999999999999999999999988653 35689999999999999999999988 3478899999
Q ss_pred cCCCC---------CCeeEEe--------ccc------------------------------------------------
Q psy14082 78 GGTPK---------GPQDCLP--------LHR------------------------------------------------ 92 (233)
Q Consensus 78 gg~~~---------~~~~lv~--------l~r------------------------------------------------ 92 (233)
||.++ ..+++|+ +.+
T Consensus 111 gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~ 190 (629)
T PRK11634 111 GGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 (629)
T ss_pred CCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccC
Confidence 99764 3567777 000
Q ss_pred ---h--------------------------------------hhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCC
Q psy14082 93 ---F--------------------------------------VFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERH 131 (233)
Q Consensus 93 ---~--------------------------------------~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~ 131 (233)
+ ...+...+......++||||+|+..++.++..|.+.|+
T Consensus 191 p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~ 270 (629)
T PRK11634 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGY 270 (629)
T ss_pred ChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCC
Confidence 0 00000123334557899999999999999999999999
Q ss_pred eeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------ceeeEEee
Q psy14082 132 SAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVIEVVQ 199 (233)
Q Consensus 132 ~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~~~~~ 199 (233)
.+..+||+|++.+|..++++|++|+.+||||||++++|+|+|++++|||||+|.+.+.|+ |.++.|+.
T Consensus 271 ~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~ 350 (629)
T PRK11634 271 NSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE 350 (629)
T ss_pred CEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEec
Confidence 999999999999999999999999999999999999999999999999999999998777 45667887
Q ss_pred cchHHHHHHHHHHhhcCccccccc
Q psy14082 200 DYEKEKRLFSLIRELGKYTLITQE 223 (233)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~~ 223 (233)
+.+ ...++.+++..+..++..+
T Consensus 351 ~~e--~~~l~~ie~~~~~~i~~~~ 372 (629)
T PRK11634 351 NRE--RRLLRNIERTMKLTIPEVE 372 (629)
T ss_pred hHH--HHHHHHHHHHhCCCcceec
Confidence 544 6788888887666654443
No 20
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.6e-38 Score=276.46 Aligned_cols=213 Identities=26% Similarity=0.376 Sum_probs=174.2
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~g 78 (233)
|||.++.|+|++++||||||||++|++|++++++..+ .....++++||++||+|||.|+++.+..+ ..++++..++|
T Consensus 31 ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~-~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~g 109 (434)
T PRK11192 31 AIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFP-RRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITG 109 (434)
T ss_pred HHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcc-ccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEEC
Confidence 5788999999999999999999999999999997542 12234679999999999999999999998 45788999999
Q ss_pred CCCC---------CCeeEEe---------------ccc------------------------------------------
Q psy14082 79 GTPK---------GPQDCLP---------------LHR------------------------------------------ 92 (233)
Q Consensus 79 g~~~---------~~~~lv~---------------l~r------------------------------------------ 92 (233)
|.+. +.+++|+ +++
T Consensus 110 g~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~ 189 (434)
T PRK11192 110 GVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLE 189 (434)
T ss_pred CCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecC
Confidence 8754 3456777 000
Q ss_pred ------------------------------------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCC
Q psy14082 93 ------------------------------------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRER 130 (233)
Q Consensus 93 ------------------------------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~ 130 (233)
...++...+......++||||+++++++.++..|.+.+
T Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~ 269 (434)
T PRK11192 190 GDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAG 269 (434)
T ss_pred HHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCC
Confidence 00111113334467899999999999999999999999
Q ss_pred CeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc---c---------eeeEEe
Q psy14082 131 HSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI---S---------QVIEVV 198 (233)
Q Consensus 131 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i---~---------~~~~~~ 198 (233)
+.+..+||+|++.+|..+++.|++|+.+||||||++++|+|+|++++|||||+|.+.+.|+ | .++.++
T Consensus 270 ~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~ 349 (434)
T PRK11192 270 INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLV 349 (434)
T ss_pred CCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999988666 3 345567
Q ss_pred ecchHHHHHHHHHHhhcC
Q psy14082 199 QDYEKEKRLFSLIRELGK 216 (233)
Q Consensus 199 ~~~~~~~~~~~~i~~~~~ 216 (233)
+.++ ...+..++++..
T Consensus 350 ~~~d--~~~~~~i~~~~~ 365 (434)
T PRK11192 350 EAHD--HLLLGKIERYIE 365 (434)
T ss_pred cHHH--HHHHHHHHHHHh
Confidence 6544 666667766443
No 21
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.8e-37 Score=274.78 Aligned_cols=218 Identities=24% Similarity=0.307 Sum_probs=178.3
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCC--CCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEE
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQ--GDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICI 76 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~--~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~ 76 (233)
|||.++.|+|+++.|+||||||++|++|+++.+...+.... .+++++|||+||+||+.|+++.++.+ ..++++..+
T Consensus 117 ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~ 196 (475)
T PRK01297 117 VLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTF 196 (475)
T ss_pred HHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEE
Confidence 57889999999999999999999999999999986532111 23689999999999999999999998 456788899
Q ss_pred EcCCCC----------CCeeEEe--------------------------------------ccch---------------
Q psy14082 77 FGGTPK----------GPQDCLP--------------------------------------LHRF--------------- 93 (233)
Q Consensus 77 ~gg~~~----------~~~~lv~--------------------------------------l~r~--------------- 93 (233)
+||.+. ..+++|+ ++++
T Consensus 197 ~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~ 276 (475)
T PRK01297 197 VGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLF 276 (475)
T ss_pred EccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEE
Confidence 998643 3456777 0000
Q ss_pred ----------------------------------------------hhhchHHHhcCCCCeEEEEecchhHHHHHHHHHh
Q psy14082 94 ----------------------------------------------VFNCQYEMAKNPAFKVIVFVETKKKVEDITRALR 127 (233)
Q Consensus 94 ----------------------------------------------~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~ 127 (233)
...+.+.+......++||||++++.++.+++.|.
T Consensus 277 SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~ 356 (475)
T PRK01297 277 SATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLV 356 (475)
T ss_pred EeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Confidence 0001112334455799999999999999999999
Q ss_pred hCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------ceee
Q psy14082 128 RERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVI 195 (233)
Q Consensus 128 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~ 195 (233)
+.++.+..+||++++++|.++++.|++|+.++|||||++++|+|+|++++||+||+|.|...|+ |.++
T Consensus 357 ~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i 436 (475)
T PRK01297 357 KDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSI 436 (475)
T ss_pred HcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEE
Confidence 9999999999999999999999999999999999999999999999999999999999998777 3456
Q ss_pred EEeecchHHHHHHHHHHhhcCcccc
Q psy14082 196 EVVQDYEKEKRLFSLIRELGKYTLI 220 (233)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~~~~~~~~ 220 (233)
.|+++. +...+..+++..+.++.
T Consensus 437 ~~~~~~--d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 437 SFAGED--DAFQLPEIEELLGRKIS 459 (475)
T ss_pred EEecHH--HHHHHHHHHHHhCCCCc
Confidence 677754 36678888887766653
No 22
>KOG0336|consensus
Probab=100.00 E-value=1.8e-38 Score=262.82 Aligned_cols=226 Identities=28% Similarity=0.450 Sum_probs=186.4
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCC-CCCCCCceEEEEcCcHHHHHHHHHHHHHh-hcCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEP-VKQGDGPIALVLAPTRELAQQIQTVAKEF-SSALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~-~~~~~~~~~lil~PtreL~~Q~~~~~~~~-~~~~~~~~~~g 78 (233)
|+|.++.|.|+|+.|+||+|||++|++|-+-++..++. ..+..++.+|++.|||||+.|+.-.+.++ +.+++..|++|
T Consensus 250 aWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~yg 329 (629)
T KOG0336|consen 250 AWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYG 329 (629)
T ss_pred ccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEec
Confidence 79999999999999999999999999999999987643 33467999999999999999999999999 88999999999
Q ss_pred CCCCCCee---------EEe--------------------------------------ccc-------------------
Q psy14082 79 GTPKGPQD---------CLP--------------------------------------LHR------------------- 92 (233)
Q Consensus 79 g~~~~~~~---------lv~--------------------------------------l~r------------------- 92 (233)
|.+...|+ +++ +++
T Consensus 330 ggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP 409 (629)
T KOG0336|consen 330 GGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWP 409 (629)
T ss_pred CCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCc
Confidence 98886655 444 000
Q ss_pred -----------------------------------------hhhhchHHH-hcCCCCeEEEEecchhHHHHHHHHHhhCC
Q psy14082 93 -----------------------------------------FVFNCQYEM-AKNPAFKVIVFVETKKKVEDITRALRRER 130 (233)
Q Consensus 93 -----------------------------------------~~~~~~~~~-~~~~~~k~iIf~~~~~~~~~l~~~L~~~~ 130 (233)
.....+... ......|+||||.++..++.+...|.-.|
T Consensus 410 ~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~g 489 (629)
T KOG0336|consen 410 EGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKG 489 (629)
T ss_pred hHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcc
Confidence 111111122 44577899999999999999999999999
Q ss_pred CeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------ceeeEEe
Q psy14082 131 HSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVIEVV 198 (233)
Q Consensus 131 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~~~~ 198 (233)
+++..+||+-++.+|+..++.|++|+.+|||+||+++||+|++++.||+|||+|.+.++|+ |.+++|+
T Consensus 490 i~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~l 569 (629)
T KOG0336|consen 490 ISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFL 569 (629)
T ss_pred cchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999887 3455677
Q ss_pred ecch--HHHHHHHHHHhhcCcccccccchhhHhhhc
Q psy14082 199 QDYE--KEKRLFSLIRELGKYTLITQESSSTLSEMV 232 (233)
Q Consensus 199 ~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 232 (233)
...+ --+.+.+++++. .++.|..|..||
T Consensus 570 t~~D~~~a~eLI~ILe~a------eQevPdeL~~mA 599 (629)
T KOG0336|consen 570 TRNDWSMAEELIQILERA------EQEVPDELVRMA 599 (629)
T ss_pred ehhhHHHHHHHHHHHHHh------hhhCcHHHHHHH
Confidence 6544 223444555544 467777776665
No 23
>KOG0347|consensus
Probab=100.00 E-value=2.5e-38 Score=269.74 Aligned_cols=202 Identities=24% Similarity=0.300 Sum_probs=170.4
Q ss_pred CCCCCCCC-CceeEecCCCCCchHHhHHHHHHhhhccCCC--------CCCCCceEEEEcCcHHHHHHHHHHHHHh--hc
Q psy14082 1 MLPPSESG-CQNFSKITNYLLSPPQYMLPAAVHISHQEPV--------KQGDGPIALVLAPTRELAQQIQTVAKEF--SS 69 (233)
Q Consensus 1 aip~~~~g-~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~--------~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~ 69 (233)
.||.+.+| .|+++.|.||||||+||.||+++++.+.... .+...+.+||++||||||.|+.+.+... ++
T Consensus 211 ~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t 290 (731)
T KOG0347|consen 211 VLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKT 290 (731)
T ss_pred cccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhcccc
Confidence 37999999 8999999999999999999999977764221 1122345999999999999999999999 78
Q ss_pred CCcEEEEEcCCC---------CCCeeEEe-----------------------------------------ccc-------
Q psy14082 70 ALRNICIFGGTP---------KGPQDCLP-----------------------------------------LHR------- 92 (233)
Q Consensus 70 ~~~~~~~~gg~~---------~~~~~lv~-----------------------------------------l~r------- 92 (233)
++++..++||.. ..++|+|| |+.
T Consensus 291 ~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e 370 (731)
T KOG0347|consen 291 QIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNE 370 (731)
T ss_pred CeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhh
Confidence 999999999954 37888888 000
Q ss_pred -------------------------------------------------------hhhhchH------------------
Q psy14082 93 -------------------------------------------------------FVFNCQY------------------ 99 (233)
Q Consensus 93 -------------------------------------------------------~~~~~~~------------------ 99 (233)
++++-.+
T Consensus 371 ~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~e 450 (731)
T KOG0347|consen 371 EQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLE 450 (731)
T ss_pred hhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccc
Confidence 1111111
Q ss_pred ------HHhcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCC
Q psy14082 100 ------EMAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVE 173 (233)
Q Consensus 100 ------~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~ 173 (233)
++.....+++|||||+.+.+..++-.|...++....+|+.|.+++|...+++|++....+|+|||+++||+|+|
T Consensus 451 KD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp 530 (731)
T KOG0347|consen 451 KDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIP 530 (731)
T ss_pred cceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCC
Confidence 44556788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCCCcccccc------------eeeEEeecch
Q psy14082 174 DVNTVNIGSLQLSANHNIS------------QVIEVVQDYE 202 (233)
Q Consensus 174 ~v~~VI~~d~P~~~~~~i~------------~~~~~~~~~~ 202 (233)
+|+|||||.+|.+.+-||| -.+.++.+.+
T Consensus 531 ~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 531 GVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred CcceEEEeecCCccceeEecccccccccCCCeEEEEeChHH
Confidence 9999999999999999994 4555777644
No 24
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.5e-37 Score=277.14 Aligned_cols=202 Identities=23% Similarity=0.363 Sum_probs=163.2
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCC--CCCCCCceEEEEcCcHHHHHHHHHHHHHhh--cCCcEEEE
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEP--VKQGDGPIALVLAPTRELAQQIQTVAKEFS--SALRNICI 76 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~--~~~~~~~~~lil~PtreL~~Q~~~~~~~~~--~~~~~~~~ 76 (233)
|||.++.|+|++++||||||||++|++|++.+++.... .....++++|||+||||||.|+++.++.+. .++++.++
T Consensus 151 aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~ 230 (518)
T PLN00206 151 AIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALV 230 (518)
T ss_pred HHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 57889999999999999999999999999999875421 122468999999999999999999999983 45678888
Q ss_pred EcCCCC---------CCeeEEe---------------ccc----------------------------------------
Q psy14082 77 FGGTPK---------GPQDCLP---------------LHR---------------------------------------- 92 (233)
Q Consensus 77 ~gg~~~---------~~~~lv~---------------l~r---------------------------------------- 92 (233)
+||... ..+++|+ +++
T Consensus 231 ~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl 310 (518)
T PLN00206 231 VGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATV 310 (518)
T ss_pred ECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeC
Confidence 888654 2456666 000
Q ss_pred --------------------------------hhhhch---------HHHh--cCCCCeEEEEecchhHHHHHHHHHhh-
Q psy14082 93 --------------------------------FVFNCQ---------YEMA--KNPAFKVIVFVETKKKVEDITRALRR- 128 (233)
Q Consensus 93 --------------------------------~~~~~~---------~~~~--~~~~~k~iIf~~~~~~~~~l~~~L~~- 128 (233)
++..+. +.+. .....++||||+++..++.++..|..
T Consensus 311 ~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~ 390 (518)
T PLN00206 311 SPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV 390 (518)
T ss_pred CHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc
Confidence 000000 0111 12346899999999999999999975
Q ss_pred CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------ceeeE
Q psy14082 129 ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVIE 196 (233)
Q Consensus 129 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~~ 196 (233)
.++.+..+||+|++++|..++++|++|+.+|||||++++||+|+|++++|||||+|.+..+|+ |.++.
T Consensus 391 ~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~ 470 (518)
T PLN00206 391 TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIV 470 (518)
T ss_pred cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEE
Confidence 689999999999999999999999999999999999999999999999999999999998777 35566
Q ss_pred Eeecch
Q psy14082 197 VVQDYE 202 (233)
Q Consensus 197 ~~~~~~ 202 (233)
|+++.+
T Consensus 471 f~~~~~ 476 (518)
T PLN00206 471 FVNEED 476 (518)
T ss_pred EEchhH
Confidence 776533
No 25
>KOG0341|consensus
Probab=100.00 E-value=1.6e-38 Score=261.68 Aligned_cols=190 Identities=32% Similarity=0.465 Sum_probs=164.7
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCC---CCCCCCceEEEEcCcHHHHHHHHHHHHHh--------hcC
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEP---VKQGDGPIALVLAPTRELAQQIQTVAKEF--------SSA 70 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~---~~~~~~~~~lil~PtreL~~Q~~~~~~~~--------~~~ 70 (233)
||.+++|+|.|.+|-||||||++|++|++...++++. -.++.||..||+||+||||.|+++.+..+ ++.
T Consensus 201 lPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~ 280 (610)
T KOG0341|consen 201 LPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPE 280 (610)
T ss_pred cceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 7999999999999999999999999999998887643 33477999999999999999999999998 567
Q ss_pred CcEEEEEcCCCCCCee---------EEe-ccc------------------------------------------------
Q psy14082 71 LRNICIFGGTPKGPQD---------CLP-LHR------------------------------------------------ 92 (233)
Q Consensus 71 ~~~~~~~gg~~~~~~~---------lv~-l~r------------------------------------------------ 92 (233)
+++.+++||.+.+.|. +|+ -.|
T Consensus 281 lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQT 360 (610)
T KOG0341|consen 281 LRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQT 360 (610)
T ss_pred hhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhhe
Confidence 8999999998875554 565 000
Q ss_pred ---------------------------------hhhhchH--------------HHhcCCCCeEEEEecchhHHHHHHHH
Q psy14082 93 ---------------------------------FVFNCQY--------------EMAKNPAFKVIVFVETKKKVEDITRA 125 (233)
Q Consensus 93 ---------------------------------~~~~~~~--------------~~~~~~~~k~iIf~~~~~~~~~l~~~ 125 (233)
-++++++ .+......+++|||..+..++.+.++
T Consensus 361 LLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEY 440 (610)
T KOG0341|consen 361 LLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEY 440 (610)
T ss_pred eeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccCCCceEEEeccccChHHHHHH
Confidence 0011100 23455678999999999999999999
Q ss_pred HhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc
Q psy14082 126 LRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI 191 (233)
Q Consensus 126 L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i 191 (233)
|--.|..++.+||+.++++|...++.|+.|+.++||+||+++.|+|+|++.||||||+|...+.|+
T Consensus 441 LLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYV 506 (610)
T KOG0341|consen 441 LLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYV 506 (610)
T ss_pred HHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998666
No 26
>KOG0334|consensus
Probab=100.00 E-value=6.4e-37 Score=277.56 Aligned_cols=227 Identities=30% Similarity=0.469 Sum_probs=189.5
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~g 78 (233)
|||.+++|+|||++|.||||||++|++|++.+++.+++.....||.+||++|||||+.|+++.++.| ..++++.+.+|
T Consensus 395 AiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vyg 474 (997)
T KOG0334|consen 395 AIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYG 474 (997)
T ss_pred hcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecC
Confidence 8999999999999999999999999999999999988777788999999999999999999999999 66889999999
Q ss_pred CCCCCCee---------EEe------------------ccc---------------------------------------
Q psy14082 79 GTPKGPQD---------CLP------------------LHR--------------------------------------- 92 (233)
Q Consensus 79 g~~~~~~~---------lv~------------------l~r--------------------------------------- 92 (233)
|.+...|+ +|+ |+|
T Consensus 475 g~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSa 554 (997)
T KOG0334|consen 475 GSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSA 554 (997)
T ss_pred CccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhh
Confidence 98886655 555 222
Q ss_pred ----------------------------------hhhhch-----------HHHhcCCCCeEEEEecchhHHHHHHHHHh
Q psy14082 93 ----------------------------------FVFNCQ-----------YEMAKNPAFKVIVFVETKKKVEDITRALR 127 (233)
Q Consensus 93 ----------------------------------~~~~~~-----------~~~~~~~~~k~iIf~~~~~~~~~l~~~L~ 127 (233)
.+.+|. -+-......++||||.....++.+...|.
T Consensus 555 tfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~ 634 (997)
T KOG0334|consen 555 TFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQ 634 (997)
T ss_pred hhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHH
Confidence 111111 01123347899999999999999999999
Q ss_pred hCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------ceee
Q psy14082 128 RERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVI 195 (233)
Q Consensus 128 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~ 195 (233)
+.|+.|..+||+.++.+|..++++|+++..++||+|++++||+|++++.+|||||+|...++|+ |.++
T Consensus 635 ~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~Av 714 (997)
T KOG0334|consen 635 KAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAV 714 (997)
T ss_pred hcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeE
Confidence 9999999999999999999999999999999999999999999999999999999999999888 5778
Q ss_pred EEeecchHHHHHHHHHHhhcCcccccccchhhHhhh
Q psy14082 196 EVVQDYEKEKRLFSLIRELGKYTLITQESSSTLSEM 231 (233)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 231 (233)
+|+.+ ++......+.+.+ .+..++.|+.+..|
T Consensus 715 tFi~p-~q~~~a~dl~~al---~~~~~~~P~~l~~l 746 (997)
T KOG0334|consen 715 TFITP-DQLKYAGDLCKAL---ELSKQPVPKLLQAL 746 (997)
T ss_pred EEeCh-HHhhhHHHHHHHH---HhccCCCchHHHHH
Confidence 89987 4444444444444 22334444555443
No 27
>KOG0346|consensus
Probab=100.00 E-value=3.2e-37 Score=257.07 Aligned_cols=202 Identities=22% Similarity=0.315 Sum_probs=165.7
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCC-CCCCCceEEEEcCcHHHHHHHHHHHHHh----hcCCcEEE
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPV-KQGDGPIALVLAPTRELAQQIQTVAKEF----SSALRNIC 75 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~-~~~~~~~~lil~PtreL~~Q~~~~~~~~----~~~~~~~~ 75 (233)
|||.++.|+|+++.|.||||||+||++|+++.++..+.. ....++.++||+||||||+|+++.+.++ ...+++.-
T Consensus 49 aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~n 128 (569)
T KOG0346|consen 49 AIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAIN 128 (569)
T ss_pred ccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 799999999999999999999999999999999986543 4467999999999999999999999999 23445444
Q ss_pred EEcCCC---------CCCeeEEe----------------------------------------------ccc--------
Q psy14082 76 IFGGTP---------KGPQDCLP----------------------------------------------LHR-------- 92 (233)
Q Consensus 76 ~~gg~~---------~~~~~lv~----------------------------------------------l~r-------- 92 (233)
+....+ ..++++|+ |.|
T Consensus 129 l~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmS 208 (569)
T KOG0346|consen 129 LASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMS 208 (569)
T ss_pred hhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCchhhheeeh
Confidence 443322 25667777 111
Q ss_pred ------------------------------------hhhhchH----------HHhcCCCCeEEEEecchhHHHHHHHHH
Q psy14082 93 ------------------------------------FVFNCQY----------EMAKNPAFKVIVFVETKKKVEDITRAL 126 (233)
Q Consensus 93 ------------------------------------~~~~~~~----------~~~~~~~~k~iIf~~~~~~~~~l~~~L 126 (233)
+.-.|.+ +-.+--.+|+|||+||.+.+..+.-.|
T Consensus 209 ATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfL 288 (569)
T KOG0346|consen 209 ATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFL 288 (569)
T ss_pred hhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHH
Confidence 1111111 112335689999999999999999999
Q ss_pred hhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----------------------------------cCcCCcC
Q psy14082 127 RRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----------------------------------VAARGLD 171 (233)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----------------------------------~~~~Gld 171 (233)
+..|++..++.|.||...|..++++|+.|-++++|||| -.+||+|
T Consensus 289 eqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGID 368 (569)
T KOG0346|consen 289 EQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGID 368 (569)
T ss_pred HHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhcccc
Confidence 99999999999999999999999999999999999996 2459999
Q ss_pred CCCccEEEEecCCCCccccc------------ceeeEEeecch
Q psy14082 172 VEDVNTVNIGSLQLSANHNI------------SQVIEVVQDYE 202 (233)
Q Consensus 172 i~~v~~VI~~d~P~~~~~~i------------~~~~~~~~~~~ 202 (233)
+.+|.+|+|||+|.++..|| |.+++|+.+.+
T Consensus 369 F~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e 411 (569)
T KOG0346|consen 369 FHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKE 411 (569)
T ss_pred chheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchH
Confidence 99999999999999999888 45667887655
No 28
>KOG0339|consensus
Probab=100.00 E-value=4.1e-36 Score=254.32 Aligned_cols=226 Identities=32% Similarity=0.480 Sum_probs=187.7
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~g 78 (233)
|+|..++|+|++.+|-||||||.||+.|++.+++.++..++..+|.+||+|||||||.|++.++++| .-++++.+++|
T Consensus 253 alptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~yg 332 (731)
T KOG0339|consen 253 ALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYG 332 (731)
T ss_pred ccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeec
Confidence 6899999999999999999999999999999999998888899999999999999999999999999 44789999999
Q ss_pred CCCCCC---------eeEEe---------------ccc------------------------------------------
Q psy14082 79 GTPKGP---------QDCLP---------------LHR------------------------------------------ 92 (233)
Q Consensus 79 g~~~~~---------~~lv~---------------l~r------------------------------------------ 92 (233)
|.+..+ .++|+ +.|
T Consensus 333 Ggsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~ 412 (731)
T KOG0339|consen 333 GGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFK 412 (731)
T ss_pred CCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccch
Confidence 987644 34776 111
Q ss_pred -------------------------------hhh-----------hchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCC
Q psy14082 93 -------------------------------FVF-----------NCQYEMAKNPAFKVIVFVETKKKVEDITRALRRER 130 (233)
Q Consensus 93 -------------------------------~~~-----------~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~ 130 (233)
.+. +.+++......+++|+|+..+..++.++..|+-.+
T Consensus 413 ~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~ 492 (731)
T KOG0339|consen 413 KKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKG 492 (731)
T ss_pred HHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhcccc
Confidence 111 11113344466899999999999999999999999
Q ss_pred CeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCcc---ccc---------ceeeEEe
Q psy14082 131 HSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSAN---HNI---------SQVIEVV 198 (233)
Q Consensus 131 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~---~~i---------~~~~~~~ 198 (233)
+++..+||+|.+.+|.+++.+|+.+..+|||+||+..||+|++++..|||||+-.+.+ |+| |.+.+++
T Consensus 493 ~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlv 572 (731)
T KOG0339|consen 493 FNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLV 572 (731)
T ss_pred ceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEe
Confidence 9999999999999999999999999999999999999999999999999999999987 455 4566678
Q ss_pred ecchHH--HHHHHHHHhhcCcccccccchhhHhhhc
Q psy14082 199 QDYEKE--KRLFSLIRELGKYTLITQESSSTLSEMV 232 (233)
Q Consensus 199 ~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 232 (233)
++.+.. ..+++.|+-- -+..|..+-+||
T Consensus 573 TeKDa~fAG~LVnnLe~a------gQnVP~~l~dla 602 (731)
T KOG0339|consen 573 TEKDAEFAGHLVNNLEGA------GQNVPDELMDLA 602 (731)
T ss_pred chhhHHHhhHHHHHHhhc------cccCChHHHHHH
Confidence 764422 2333333332 366777777665
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3.9e-35 Score=254.83 Aligned_cols=214 Identities=26% Similarity=0.356 Sum_probs=172.5
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh--cCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS--SALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~--~~~~~~~~~g 78 (233)
|||.+++|+|++++||||||||++|++|+++.+... ..+.++|||+||+||+.|+.+.+..+. .++.+..+.|
T Consensus 58 ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g 132 (401)
T PTZ00424 58 GIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVG 132 (401)
T ss_pred HHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEEC
Confidence 578889999999999999999999999999888543 346789999999999999999999983 4566777777
Q ss_pred CCCC---------CCeeEEe---------------ccc------------------------------------------
Q psy14082 79 GTPK---------GPQDCLP---------------LHR------------------------------------------ 92 (233)
Q Consensus 79 g~~~---------~~~~lv~---------------l~r------------------------------------------ 92 (233)
+... ..+++|+ +++
T Consensus 133 ~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 212 (401)
T PTZ00424 133 GTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMP 212 (401)
T ss_pred CcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCC
Confidence 7532 2356666 000
Q ss_pred -----------------------------------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCC
Q psy14082 93 -----------------------------------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERH 131 (233)
Q Consensus 93 -----------------------------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~ 131 (233)
....+.+.+......++||||+++++++.++..|.+.++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~ 292 (401)
T PTZ00424 213 NEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDF 292 (401)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCC
Confidence 000000122334567899999999999999999999999
Q ss_pred eeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------ceeeEEee
Q psy14082 132 SAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVIEVVQ 199 (233)
Q Consensus 132 ~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~~~~~ 199 (233)
.+..+||+|++++|..+++.|++|+.+|||||+.+++|+|+|++++||+||+|.+...|+ |.++.+++
T Consensus 293 ~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~ 372 (401)
T PTZ00424 293 TVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVT 372 (401)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEc
Confidence 999999999999999999999999999999999999999999999999999999987666 34466777
Q ss_pred cchHHHHHHHHHHhhcCccccc
Q psy14082 200 DYEKEKRLFSLIRELGKYTLIT 221 (233)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~ 221 (233)
+++ ...+..+++.....++.
T Consensus 373 ~~~--~~~~~~~e~~~~~~~~~ 392 (401)
T PTZ00424 373 PDD--IEQLKEIERHYNTQIEE 392 (401)
T ss_pred HHH--HHHHHHHHHHHCCcccc
Confidence 544 66778888877665554
No 30
>KOG0332|consensus
Probab=100.00 E-value=1.7e-35 Score=242.42 Aligned_cols=223 Identities=25% Similarity=0.324 Sum_probs=177.5
Q ss_pred CCCCCCC--CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEE
Q psy14082 1 MLPPSES--GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICI 76 (233)
Q Consensus 1 aip~~~~--g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~ 76 (233)
|+|.++. .++.|+||.+|||||+||++.++.++... ...|+++-|+||||||.|+.+.+.+. +.+++....
T Consensus 120 aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-----~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~ya 194 (477)
T KOG0332|consen 120 ALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-----VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYA 194 (477)
T ss_pred hcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc-----ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEE
Confidence 6787766 78999999999999999999999999765 56889999999999999999999999 556677666
Q ss_pred EcCC------CCCCeeEEe-------------------------------------------------------------
Q psy14082 77 FGGT------PKGPQDCLP------------------------------------------------------------- 89 (233)
Q Consensus 77 ~gg~------~~~~~~lv~------------------------------------------------------------- 89 (233)
+-|. ...+||+||
T Consensus 195 ir~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf 274 (477)
T KOG0332|consen 195 IRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATF 274 (477)
T ss_pred ecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechh
Confidence 6654 335677777
Q ss_pred -------------------ccc----------hhhhchH----------HHhcCCCCeEEEEecchhHHHHHHHHHhhCC
Q psy14082 90 -------------------LHR----------FVFNCQY----------EMAKNPAFKVIVFVETKKKVEDITRALRRER 130 (233)
Q Consensus 90 -------------------l~r----------~~~~~~~----------~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~ 130 (233)
|+| +.-.|.. +.....-+++||||.|++++.+++..|...|
T Consensus 275 ~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~G 354 (477)
T KOG0332|consen 275 VEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEG 354 (477)
T ss_pred HHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcC
Confidence 000 1111111 2333355789999999999999999999999
Q ss_pred CeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCcc---------cccceeeE-----
Q psy14082 131 HSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSAN---------HNISQVIE----- 196 (233)
Q Consensus 131 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~---------~~i~~~~~----- 196 (233)
+.+..+||+|...+|..++++|+.|..++||+|++++||+|++.|++|||||+|.... |||||.++
T Consensus 355 h~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG 434 (477)
T KOG0332|consen 355 HQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKG 434 (477)
T ss_pred ceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999997653 66654444
Q ss_pred ----EeecchHHHHHHHHHHhhcCcccccccchhhHhh
Q psy14082 197 ----VVQDYEKEKRLFSLIRELGKYTLITQESSSTLSE 230 (233)
Q Consensus 197 ----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 230 (233)
++.+ ++...+++.|+++.+..+..... .++++
T Consensus 435 ~a~n~v~~-~~s~~~mn~iq~~F~~~i~~~~~-~d~~E 470 (477)
T KOG0332|consen 435 LAINLVDD-KDSMNIMNKIQKHFNMKIKRLDP-DDLDE 470 (477)
T ss_pred eEEEeecc-cCcHHHHHHHHHHHhhcceecCC-ccHHH
Confidence 4544 46678888888877555443333 44433
No 31
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.1e-34 Score=267.18 Aligned_cols=213 Identities=19% Similarity=0.221 Sum_probs=167.1
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh-cCCcEEEEEcC
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS-SALRNICIFGG 79 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~-~~~~~~~~~gg 79 (233)
|||.++.|+|+++.+|||||||++|++|+++++... +++++|||+|||||+.|+++.++.+. .++++..+.|+
T Consensus 44 ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~------~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gd 117 (742)
T TIGR03817 44 AAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD------PRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGD 117 (742)
T ss_pred HHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC------CCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCC
Confidence 578899999999999999999999999999999753 46799999999999999999999983 46788888888
Q ss_pred CCC--------CCeeEEe---------------------------------------------ccchhhhch--------
Q psy14082 80 TPK--------GPQDCLP---------------------------------------------LHRFVFNCQ-------- 98 (233)
Q Consensus 80 ~~~--------~~~~lv~---------------------------------------------l~r~~~~~~-------- 98 (233)
.+. +++++|+ ++|+..++.
T Consensus 118 t~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~ 197 (742)
T TIGR03817 118 TPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRLRRLCARYGASPVF 197 (742)
T ss_pred CCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 653 3455666 000000000
Q ss_pred -------------------------------------------------------------H---HH--hcCCCCeEEEE
Q psy14082 99 -------------------------------------------------------------Y---EM--AKNPAFKVIVF 112 (233)
Q Consensus 99 -------------------------------------------------------------~---~~--~~~~~~k~iIf 112 (233)
+ .+ .-..+.++|||
T Consensus 198 i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~~~~~IVF 277 (742)
T TIGR03817 198 VLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAEGARTLTF 277 (742)
T ss_pred EEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHCCCCEEEE
Confidence 0 00 00135799999
Q ss_pred ecchhHHHHHHHHHhhC--------CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCC
Q psy14082 113 VETKKKVEDITRALRRE--------RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQ 184 (233)
Q Consensus 113 ~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P 184 (233)
|+|++.++.++..|++. +.++..+||++++++|.+++++|++|+.++|||||++++|+|+|++++|||||+|
T Consensus 278 ~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P 357 (742)
T TIGR03817 278 VRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFP 357 (742)
T ss_pred cCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCC
Confidence 99999999999998753 5678899999999999999999999999999999999999999999999999999
Q ss_pred CCccccc---c---------eeeEEeecchHHHHHHHHHHhhcCccc
Q psy14082 185 LSANHNI---S---------QVIEVVQDYEKEKRLFSLIRELGKYTL 219 (233)
Q Consensus 185 ~~~~~~i---~---------~~~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (233)
.+...|+ | .++.+.++...+..++..+++..+..+
T Consensus 358 ~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~ 404 (742)
T TIGR03817 358 GTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPV 404 (742)
T ss_pred CCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCC
Confidence 9998666 2 334455544444556666665544443
No 32
>KOG0350|consensus
Probab=100.00 E-value=4.6e-34 Score=241.38 Aligned_cols=208 Identities=20% Similarity=0.256 Sum_probs=168.8
Q ss_pred CCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEcCC
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFGGT 80 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~gg~ 80 (233)
|+-.+++|+.+.||||||||++|++|+++.+...+ -+..||||++|||+|+.|+++.|.++ ..++.++.+.|..
T Consensus 178 p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~----v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~ 253 (620)
T KOG0350|consen 178 PPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP----VKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQN 253 (620)
T ss_pred CCCCCCCceEEecCCCCCceeeehhHHHHHHccCC----ccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEeccccc
Confidence 66778999999999999999999999999887642 34689999999999999999999999 5677878888774
Q ss_pred CC--------------CCeeEEe----------------ccc--------------------------------------
Q psy14082 81 PK--------------GPQDCLP----------------LHR-------------------------------------- 92 (233)
Q Consensus 81 ~~--------------~~~~lv~----------------l~r-------------------------------------- 92 (233)
+. +-+++|+ |+.
T Consensus 254 sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~ 333 (620)
T KOG0350|consen 254 SLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLD 333 (620)
T ss_pred chHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChh
Confidence 43 1255676 000
Q ss_pred ---------------------------------------------------------------hhhhc------------
Q psy14082 93 ---------------------------------------------------------------FVFNC------------ 97 (233)
Q Consensus 93 ---------------------------------------------------------------~~~~~------------ 97 (233)
.+.++
T Consensus 334 nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~ 413 (620)
T KOG0350|consen 334 NIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEP 413 (620)
T ss_pred hhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeeccc
Confidence 00000
Q ss_pred -------hHHHhcCCCCeEEEEecchhHHHHHHHHHh----hCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccC
Q psy14082 98 -------QYEMAKNPAFKVIVFVETKKKVEDITRALR----RERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVA 166 (233)
Q Consensus 98 -------~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~ 166 (233)
-.++...+..++|+|+++...+..++..|. ..+.++..++|+++.+.|.+.+++|+.|++++|||+|++
T Consensus 414 ~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~l 493 (620)
T KOG0350|consen 414 KFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDAL 493 (620)
T ss_pred ccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhh
Confidence 004566788999999999999999998887 345677789999999999999999999999999999999
Q ss_pred cCCcCCCCccEEEEecCCCCccccc------------ceeeEEeecchHHHHHHHHHHhhc
Q psy14082 167 ARGLDVEDVNTVNIGSLQLSANHNI------------SQVIEVVQDYEKEKRLFSLIRELG 215 (233)
Q Consensus 167 ~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~~~~~~~~~~~~~~~~i~~~~ 215 (233)
+||+|+.+++.|||||+|.+...|| |.++.++++++ ...|.+++++..
T Consensus 494 aRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~-~r~F~klL~~~~ 553 (620)
T KOG0350|consen 494 ARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHE-KRLFSKLLKKTN 553 (620)
T ss_pred hcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeecccc-chHHHHHHHHhc
Confidence 9999999999999999999999888 45566777654 456667776643
No 33
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.9e-33 Score=245.38 Aligned_cols=178 Identities=21% Similarity=0.178 Sum_probs=145.2
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGT 80 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~ 80 (233)
|||.+++|+|+++++|||||||++|++|++. .+..+||++||+||+.|+.+.+..+ ++.+..+.|+.
T Consensus 19 ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~-----------~~~~~lVi~P~~~L~~dq~~~l~~~--gi~~~~l~~~~ 85 (470)
T TIGR00614 19 VINAVLLGRDCFVVMPTGGGKSLCYQLPALC-----------SDGITLVISPLISLMEDQVLQLKAS--GIPATFLNSSQ 85 (470)
T ss_pred HHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH-----------cCCcEEEEecHHHHHHHHHHHHHHc--CCcEEEEeCCC
Confidence 5788899999999999999999999999984 1346999999999999999988876 56666666654
Q ss_pred CCC-------------CeeEEe--------------c--------------c--------------c-------------
Q psy14082 81 PKG-------------PQDCLP--------------L--------------H--------------R------------- 92 (233)
Q Consensus 81 ~~~-------------~~~lv~--------------l--------------~--------------r------------- 92 (233)
..+ .+++++ + + +
T Consensus 86 ~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~ 165 (470)
T TIGR00614 86 SKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPI 165 (470)
T ss_pred CHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCce
Confidence 321 223322 0 0 0
Q ss_pred ----------------------------------------------hhhhchHHHh-cCCCCeEEEEecchhHHHHHHHH
Q psy14082 93 ----------------------------------------------FVFNCQYEMA-KNPAFKVIVFVETKKKVEDITRA 125 (233)
Q Consensus 93 ----------------------------------------------~~~~~~~~~~-~~~~~k~iIf~~~~~~~~~l~~~ 125 (233)
....+.+.+. ...+.++||||++++.++.++..
T Consensus 166 l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~ 245 (470)
T TIGR00614 166 MALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTAS 245 (470)
T ss_pred EEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHH
Confidence 0000011222 34556679999999999999999
Q ss_pred HhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc
Q psy14082 126 LRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI 191 (233)
Q Consensus 126 L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i 191 (233)
|.+.|+.+..+||+|++++|..++++|++|+.+|||||+++++|+|+|+|++|||||+|.|.+.|+
T Consensus 246 L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~ 311 (470)
T TIGR00614 246 LQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYY 311 (470)
T ss_pred HHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998777
No 34
>KOG0327|consensus
Probab=100.00 E-value=4e-33 Score=229.49 Aligned_cols=219 Identities=27% Similarity=0.413 Sum_probs=181.0
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~g 78 (233)
||+|...|.|+++++++|+|||.+|.+++++++... ....+|++++|||||+.|+++....+ ..+.+++.++|
T Consensus 56 aI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~-----~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~ig 130 (397)
T KOG0327|consen 56 AILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS-----VKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIG 130 (397)
T ss_pred cccccccCCceeEeeeccccchhhhHHHHHhhcCcc-----hHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecC
Confidence 799999999999999999999999999999998643 45678999999999999999999988 55778998999
Q ss_pred CCCCC----------CeeEEe--------ccc------------------------------------------------
Q psy14082 79 GTPKG----------PQDCLP--------LHR------------------------------------------------ 92 (233)
Q Consensus 79 g~~~~----------~~~lv~--------l~r------------------------------------------------ 92 (233)
|.+.. +.+++| +.+
T Consensus 131 g~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~ 210 (397)
T KOG0327|consen 131 GTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATM 210 (397)
T ss_pred cccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccC
Confidence 87652 344555 100
Q ss_pred ---------------------------------hhhhchH-------HHhcCCCCeEEEEecchhHHHHHHHHHhhCCCe
Q psy14082 93 ---------------------------------FVFNCQY-------EMAKNPAFKVIVFVETKKKVEDITRALRRERHS 132 (233)
Q Consensus 93 ---------------------------------~~~~~~~-------~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~ 132 (233)
++.+.++ .+.. ...+.++|||++..+..+...|..++..
T Consensus 211 p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~-~~~q~~if~nt~r~v~~l~~~L~~~~~~ 289 (397)
T KOG0327|consen 211 PSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR-RVTQAVIFCNTRRKVDNLTDKLRAHGFT 289 (397)
T ss_pred cHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHH-hhhcceEEecchhhHHHHHHHHhhCCce
Confidence 0000000 1222 5678999999999999999999999999
Q ss_pred eEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------ceeeEEeec
Q psy14082 133 AICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVIEVVQD 200 (233)
Q Consensus 133 ~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~~~~~~ 200 (233)
+.++||+|.+.+|..+++.|+.|..++||+|+.++||+|+..++.|||||+|.+.++|+ |.++.++.+
T Consensus 290 ~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~ 369 (397)
T KOG0327|consen 290 VSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTE 369 (397)
T ss_pred EEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehH
Confidence 99999999999999999999999999999999999999999999999999999999888 467778886
Q ss_pred chHHHHHHHHHHhhcCcccccccchhhHh
Q psy14082 201 YEKEKRLFSLIRELGKYTLITQESSSTLS 229 (233)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 229 (233)
++ .+.++.++++.+-.++ |.|.+..
T Consensus 370 ~d--~~~lk~ie~~y~~~i~--e~p~~~~ 394 (397)
T KOG0327|consen 370 ED--VRDLKDIEKFYNTPIE--ELPSNFA 394 (397)
T ss_pred hh--HHHHHhHHHhcCCcce--ecccchh
Confidence 55 8888888887766554 4444433
No 35
>KOG0344|consensus
Probab=100.00 E-value=6.9e-33 Score=238.46 Aligned_cols=202 Identities=25% Similarity=0.301 Sum_probs=162.6
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh----cCCcEEEE
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS----SALRNICI 76 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~----~~~~~~~~ 76 (233)
|||..+.++|+++++|||||||++|.+|+++++......+...|-+++|+.|||||+.|+|..+.++. .+.+.+.+
T Consensus 166 aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~ 245 (593)
T KOG0344|consen 166 AIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQF 245 (593)
T ss_pred hhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhc
Confidence 68999999999999999999999999999999987644444678999999999999999999999993 22333333
Q ss_pred EcCCCCC----------CeeEEe-----------------------------------------ccchhhh---------
Q psy14082 77 FGGTPKG----------PQDCLP-----------------------------------------LHRFVFN--------- 96 (233)
Q Consensus 77 ~gg~~~~----------~~~lv~-----------------------------------------l~r~~~~--------- 96 (233)
....... .+++|+ +.+++..
T Consensus 246 ~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a 325 (593)
T KOG0344|consen 246 SKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVA 325 (593)
T ss_pred ccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhh
Confidence 3321110 011111 0001111
Q ss_pred ----------------------------------------------------chHHHhcCCCCeEEEEecchhHHHHHHH
Q psy14082 97 ----------------------------------------------------CQYEMAKNPAFKVIVFVETKKKVEDITR 124 (233)
Q Consensus 97 ----------------------------------------------------~~~~~~~~~~~k~iIf~~~~~~~~~l~~ 124 (233)
+.+.+...-..+++||+.+.+++.++..
T Consensus 326 ~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~ 405 (593)
T KOG0344|consen 326 LFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFE 405 (593)
T ss_pred hhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHH
Confidence 1125566678899999999999999999
Q ss_pred HH-hhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------
Q psy14082 125 AL-RRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------ 191 (233)
Q Consensus 125 ~L-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------ 191 (233)
.| .-.++.+.++||..++.+|.+.+++|+.|++++|+||++++||+|+.++++|||||+|.+...||
T Consensus 406 ~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~ 485 (593)
T KOG0344|consen 406 ELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRS 485 (593)
T ss_pred HhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCC
Confidence 99 66789999999999999999999999999999999999999999999999999999999988777
Q ss_pred ceeeEEeecch
Q psy14082 192 SQVIEVVQDYE 202 (233)
Q Consensus 192 ~~~~~~~~~~~ 202 (233)
|+++.|+++.+
T Consensus 486 g~Aitfytd~d 496 (593)
T KOG0344|consen 486 GKAITFYTDQD 496 (593)
T ss_pred cceEEEecccc
Confidence 57788888744
No 36
>KOG4284|consensus
Probab=100.00 E-value=2.3e-33 Score=243.34 Aligned_cols=191 Identities=21% Similarity=0.285 Sum_probs=166.9
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh---hcCCcEEEEE
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF---SSALRNICIF 77 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~---~~~~~~~~~~ 77 (233)
|||.+.++-|.|++|.+|+|||++|.+.+++.+..+ ...++++|++||||+|.|+++.+.++ +.+++|+.++
T Consensus 55 AIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~-----~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfI 129 (980)
T KOG4284|consen 55 AIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR-----SSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFI 129 (980)
T ss_pred hhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc-----cCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEe
Confidence 799999999999999999999999999999888765 66889999999999999999999999 6789999999
Q ss_pred cCCCC--------CCeeEEe------------------------------------------------------------
Q psy14082 78 GGTPK--------GPQDCLP------------------------------------------------------------ 89 (233)
Q Consensus 78 gg~~~--------~~~~lv~------------------------------------------------------------ 89 (233)
||++- +..++||
T Consensus 130 GGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATY 209 (980)
T KOG4284|consen 130 GGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATY 209 (980)
T ss_pred cCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccC
Confidence 99765 3445777
Q ss_pred -----------------------------ccc-----------------hhhhchHHHhcCCCCeEEEEecchhHHHHHH
Q psy14082 90 -----------------------------LHR-----------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDIT 123 (233)
Q Consensus 90 -----------------------------l~r-----------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~ 123 (233)
+++ ....+.+.+..-+..++||||+....|+.++
T Consensus 210 p~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a 289 (980)
T KOG4284|consen 210 PRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIA 289 (980)
T ss_pred chhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHH
Confidence 000 1111222566678889999999999999999
Q ss_pred HHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCcc---cccceeeE
Q psy14082 124 RALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSAN---HNISQVIE 196 (233)
Q Consensus 124 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~---~~i~~~~~ 196 (233)
..|...|+.|.++.|.|++.+|..++..++.-..+|||+||..+||+|-++|++|||.|.|.+.. |+|||+++
T Consensus 290 ~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgR 365 (980)
T KOG4284|consen 290 THLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGR 365 (980)
T ss_pred HHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999987 55654444
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=9.5e-32 Score=249.27 Aligned_cols=178 Identities=19% Similarity=0.183 Sum_probs=143.6
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGT 80 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~ 80 (233)
|||.++.|+|+++++|||+|||++|++|++.. +..+|||+|+++|+.+....+... ++++..+.|+.
T Consensus 468 aI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTLVISPLiSLmqDQV~~L~~~--GI~Aa~L~s~~ 534 (1195)
T PLN03137 468 IINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITLVISPLVSLIQDQIMNLLQA--NIPAASLSAGM 534 (1195)
T ss_pred HHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEEEEeCHHHHHHHHHHHHHhC--CCeEEEEECCC
Confidence 57889999999999999999999999999852 346999999999998554444443 67777777775
Q ss_pred CC---------------CCeeEEe----c-------------------cc------------------------------
Q psy14082 81 PK---------------GPQDCLP----L-------------------HR------------------------------ 92 (233)
Q Consensus 81 ~~---------------~~~~lv~----l-------------------~r------------------------------ 92 (233)
+. ..+++++ + .+
T Consensus 535 s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~f 614 (1195)
T PLN03137 535 EWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKF 614 (1195)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhC
Confidence 42 1233333 0 00
Q ss_pred ---------------------------------------------------hhhhchHHHh-cCCCCeEEEEecchhHHH
Q psy14082 93 ---------------------------------------------------FVFNCQYEMA-KNPAFKVIVFVETKKKVE 120 (233)
Q Consensus 93 ---------------------------------------------------~~~~~~~~~~-~~~~~k~iIf~~~~~~~~ 120 (233)
....+.+++. .....+.||||++++.++
T Consensus 615 p~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E 694 (1195)
T PLN03137 615 PNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCE 694 (1195)
T ss_pred CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHH
Confidence 0000111222 223567899999999999
Q ss_pred HHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc
Q psy14082 121 DITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI 191 (233)
Q Consensus 121 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i 191 (233)
.++..|.+.|+++..+||+|++++|..++++|+.|+++|||||+++++|||+|+|++|||||+|.+.+.|+
T Consensus 695 ~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYy 765 (1195)
T PLN03137 695 KVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYH 765 (1195)
T ss_pred HHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999777
No 38
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.97 E-value=1.3e-31 Score=251.01 Aligned_cols=191 Identities=16% Similarity=0.168 Sum_probs=152.0
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCC-CCCCCceEEEEcCcHHHHHHHHHHHHHh-------h----
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPV-KQGDGPIALVLAPTRELAQQIQTVAKEF-------S---- 68 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~-~~~~~~~~lil~PtreL~~Q~~~~~~~~-------~---- 68 (233)
|||.++.|+|++++||||||||++|.+|+++++...... ...+++++||++|||+|+.|+++.+... .
T Consensus 40 Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g 119 (876)
T PRK13767 40 AIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERG 119 (876)
T ss_pred HHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 578889999999999999999999999999998854221 1245789999999999999999876632 1
Q ss_pred ---cCCcEEEEEcCCCC---------CCeeEEe--------------------------------------------ccc
Q psy14082 69 ---SALRNICIFGGTPK---------GPQDCLP--------------------------------------------LHR 92 (233)
Q Consensus 69 ---~~~~~~~~~gg~~~---------~~~~lv~--------------------------------------------l~r 92 (233)
+++++...+|+.+. .++++|+ +.|
T Consensus 120 ~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~r 199 (876)
T PRK13767 120 EELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLER 199 (876)
T ss_pred CCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHH
Confidence 25678889998653 3456666 000
Q ss_pred hhhhc----------------------------------------------------h-----------------HHH--
Q psy14082 93 FVFNC----------------------------------------------------Q-----------------YEM-- 101 (233)
Q Consensus 93 ~~~~~----------------------------------------------------~-----------------~~~-- 101 (233)
+..++ . +.+
T Consensus 200 L~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~ 279 (876)
T PRK13767 200 LEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHE 279 (876)
T ss_pred HHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccchhHHHHHHHHHH
Confidence 00000 0 000
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHhhC------CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCc
Q psy14082 102 AKNPAFKVIVFVETKKKVEDITRALRRE------RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDV 175 (233)
Q Consensus 102 ~~~~~~k~iIf~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v 175 (233)
.-...+++||||||++.++.++..|.+. +..+..+||+|++++|..++++|++|+.++||||+.+++|+|+|++
T Consensus 280 ~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~V 359 (876)
T PRK13767 280 LIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYI 359 (876)
T ss_pred HHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCC
Confidence 0123578999999999999999999873 4678999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCccccc
Q psy14082 176 NTVNIGSLQLSANHNI 191 (233)
Q Consensus 176 ~~VI~~d~P~~~~~~i 191 (233)
++||+||.|.+...|+
T Consensus 360 d~VI~~~~P~sv~~yl 375 (876)
T PRK13767 360 DLVVLLGSPKSVSRLL 375 (876)
T ss_pred cEEEEeCCCCCHHHHH
Confidence 9999999999988555
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.97 E-value=5.1e-31 Score=239.09 Aligned_cols=178 Identities=17% Similarity=0.159 Sum_probs=144.3
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGT 80 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~ 80 (233)
|||.++.|+|+++.+|||+|||++|++|++.+ +..+||++|+++|+.|+.+.++.+ ++...++.++.
T Consensus 33 ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL~~dqv~~l~~~--gi~~~~~~s~~ 99 (607)
T PRK11057 33 IIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISLMKDQVDQLLAN--GVAAACLNSTQ 99 (607)
T ss_pred HHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHHHHHHHHHHHHc--CCcEEEEcCCC
Confidence 46778999999999999999999999999842 236899999999999999988876 45555555543
Q ss_pred CCC-------------CeeEEe-----------------------------c-----------cc---------------
Q psy14082 81 PKG-------------PQDCLP-----------------------------L-----------HR--------------- 92 (233)
Q Consensus 81 ~~~-------------~~~lv~-----------------------------l-----------~r--------------- 92 (233)
+.. .++++. + ++
T Consensus 100 ~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~ 179 (607)
T PRK11057 100 TREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMA 179 (607)
T ss_pred CHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEE
Confidence 221 111111 0 00
Q ss_pred ------------h-------------------------------hhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhC
Q psy14082 93 ------------F-------------------------------VFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRE 129 (233)
Q Consensus 93 ------------~-------------------------------~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~ 129 (233)
+ ...+...+....+.++||||+|+++++.++..|.+.
T Consensus 180 lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~ 259 (607)
T PRK11057 180 LTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSR 259 (607)
T ss_pred EecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC
Confidence 0 000011234456789999999999999999999999
Q ss_pred CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc
Q psy14082 130 RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI 191 (233)
Q Consensus 130 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i 191 (233)
|+++..+||+|++++|.++++.|+.|+.+|||||+++++|+|+|+|++|||||+|.|.+.|+
T Consensus 260 g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~ 321 (607)
T PRK11057 260 GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYY 321 (607)
T ss_pred CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998777
No 40
>KOG0337|consensus
Probab=99.97 E-value=6.3e-31 Score=218.53 Aligned_cols=216 Identities=27% Similarity=0.331 Sum_probs=172.8
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~g 78 (233)
.||.++.|+|+...|-||||||+||++|+++++.... ..|.++||++|||||+.|+.+..+.+ +.++++++++|
T Consensus 51 TipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~g 126 (529)
T KOG0337|consen 51 TIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVG 126 (529)
T ss_pred cccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcc
Confidence 4899999999999999999999999999999997642 45789999999999999999999999 67889999999
Q ss_pred CCCC---------CCeeEEe------------------------------------------ccc---------------
Q psy14082 79 GTPK---------GPQDCLP------------------------------------------LHR--------------- 92 (233)
Q Consensus 79 g~~~---------~~~~lv~------------------------------------------l~r--------------- 92 (233)
|-+. ++++++| +.|
T Consensus 127 gD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp 206 (529)
T KOG0337|consen 127 GDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLP 206 (529)
T ss_pred cchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCc
Confidence 8554 5666776 000
Q ss_pred --hhhhchH-------------------------------------HHhcC--CCCeEEEEecchhHHHHHHHHHhhCCC
Q psy14082 93 --FVFNCQY-------------------------------------EMAKN--PAFKVIVFVETKKKVEDITRALRRERH 131 (233)
Q Consensus 93 --~~~~~~~-------------------------------------~~~~~--~~~k~iIf~~~~~~~~~l~~~L~~~~~ 131 (233)
+++..+. .+..+ ...++++|+.|..+++.+...|...|+
T Consensus 207 ~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~ 286 (529)
T KOG0337|consen 207 RDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGG 286 (529)
T ss_pred hhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCC
Confidence 0000000 11122 345899999999999999999999999
Q ss_pred eeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCcc---ccc---------ceeeEEee
Q psy14082 132 SAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSAN---HNI---------SQVIEVVQ 199 (233)
Q Consensus 132 ~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~---~~i---------~~~~~~~~ 199 (233)
.+..++|.|++..|...+++|+.+...+||.||+++||+|+|-.+-|||||+|.+.. |++ |++.+++.
T Consensus 287 ~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~ 366 (529)
T KOG0337|consen 287 EGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVA 366 (529)
T ss_pred CccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEe
Confidence 999999999999999999999999999999999999999999999999999998876 333 56777787
Q ss_pred cchHHHHHHHHHHhhcCcccccc
Q psy14082 200 DYEKEKRLFSLIRELGKYTLITQ 222 (233)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~ 222 (233)
+.+ ...++ .|....+..+.+.
T Consensus 367 ~~~-~~yl~-DL~lflgr~~~~~ 387 (529)
T KOG0337|consen 367 STD-DPYLL-DLQLFLGRPLIFA 387 (529)
T ss_pred ccc-chhhh-hhhhhcCCceeec
Confidence 643 23333 3333344444433
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.97 E-value=3.7e-30 Score=233.49 Aligned_cols=178 Identities=16% Similarity=0.144 Sum_probs=146.2
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGT 80 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~ 80 (233)
|||.++.|+|+++.+|||+|||++|++|++.. +..++|++|+++|+.|..+.++.+ ++.+..+.++.
T Consensus 21 ~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~l~~~--gi~~~~~~s~~ 87 (591)
T TIGR01389 21 IISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQLRAA--GVAAAYLNSTL 87 (591)
T ss_pred HHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHHHc--CCcEEEEeCCC
Confidence 46788999999999999999999999999841 235899999999999999999887 56677676664
Q ss_pred CCC-------------CeeEEe-----------------------------c-----------cc---------------
Q psy14082 81 PKG-------------PQDCLP-----------------------------L-----------HR--------------- 92 (233)
Q Consensus 81 ~~~-------------~~~lv~-----------------------------l-----------~r--------------- 92 (233)
+.+ .++++. + .+
T Consensus 88 ~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~ 167 (591)
T TIGR01389 88 SAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIA 167 (591)
T ss_pred CHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEE
Confidence 321 122222 0 00
Q ss_pred -------------------------------------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhC
Q psy14082 93 -------------------------------------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRE 129 (233)
Q Consensus 93 -------------------------------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~ 129 (233)
....+.+.+....+.++||||++++.++.+++.|...
T Consensus 168 lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~ 247 (591)
T TIGR01389 168 LTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQ 247 (591)
T ss_pred EEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC
Confidence 0011111344445789999999999999999999999
Q ss_pred CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc
Q psy14082 130 RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI 191 (233)
Q Consensus 130 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i 191 (233)
|+++..+||+|+.++|..+++.|.+|+.+|||||+++++|+|+|++++|||||+|.|.+.|+
T Consensus 248 g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~ 309 (591)
T TIGR01389 248 GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYY 309 (591)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998776
No 42
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.96 E-value=7e-29 Score=227.50 Aligned_cols=168 Identities=20% Similarity=0.194 Sum_probs=138.9
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhc--CCcEEEEEcCCCC----
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSS--ALRNICIFGGTPK---- 82 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~--~~~~~~~~gg~~~---- 82 (233)
.+.+++++||||||++|++|++..+. ++.+++|++||++||.|+++.++++.. ++++.+++|+.+.
T Consensus 283 ~~~Ll~~~TGSGKT~va~~~il~~~~--------~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~ 354 (681)
T PRK10917 283 MNRLLQGDVGSGKTVVAALAALAAIE--------AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERR 354 (681)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHHHH--------cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHH
Confidence 47999999999999999999998873 477899999999999999999999843 5899999999762
Q ss_pred ---------CCeeEEe----c------cc---------------------------------------------------
Q psy14082 83 ---------GPQDCLP----L------HR--------------------------------------------------- 92 (233)
Q Consensus 83 ---------~~~~lv~----l------~r--------------------------------------------------- 92 (233)
+.+++|| + ++
T Consensus 355 ~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~Hrfg~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~ 434 (681)
T PRK10917 355 EILEAIASGEADIVIGTHALIQDDVEFHNLGLVIIDEQHRFGVEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDV 434 (681)
T ss_pred HHHHHHhCCCCCEEEchHHHhcccchhcccceEEEechhhhhHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCce
Confidence 3566777 0 00
Q ss_pred -------------------------hhhhchHHHhcCCCCeEEEEecch--------hHHHHHHHHHhhC--CCeeEEEe
Q psy14082 93 -------------------------FVFNCQYEMAKNPAFKVIVFVETK--------KKVEDITRALRRE--RHSAICIH 137 (233)
Q Consensus 93 -------------------------~~~~~~~~~~~~~~~k~iIf~~~~--------~~~~~l~~~L~~~--~~~~~~~~ 137 (233)
++..+.+ ....+.+++|||+.. ..++.+++.|.+. ++++..+|
T Consensus 435 s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~--~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lH 512 (681)
T PRK10917 435 SVIDELPPGRKPITTVVIPDSRRDEVYERIRE--EIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLH 512 (681)
T ss_pred EEEecCCCCCCCcEEEEeCcccHHHHHHHHHH--HHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEe
Confidence 0011111 114678999999954 4566778888765 47899999
Q ss_pred CCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCC
Q psy14082 138 GDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLS 186 (233)
Q Consensus 138 ~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~ 186 (233)
|+|++++|..++++|++|+.+|||||+++++|+|+|++++||+||.|..
T Consensus 513 G~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~ 561 (681)
T PRK10917 513 GRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERF 561 (681)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCC
Confidence 9999999999999999999999999999999999999999999999974
No 43
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.96 E-value=9.9e-29 Score=224.63 Aligned_cols=195 Identities=20% Similarity=0.208 Sum_probs=162.6
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~g 78 (233)
|||.+.+|++++++||||||||+|..+|+++.+....+.+...+..+|+++|.|+|...+...++.+ ..++.+..-+|
T Consensus 30 a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhG 109 (814)
T COG1201 30 AIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHG 109 (814)
T ss_pred HHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecC
Confidence 6889999999999999999999999999999999874344456899999999999999999999998 56788899999
Q ss_pred CCCC---------CCeeEEe--------------------------------------------ccchhhhch-------
Q psy14082 79 GTPK---------GPQDCLP--------------------------------------------LHRFVFNCQ------- 98 (233)
Q Consensus 79 g~~~---------~~~~lv~--------------------------------------------l~r~~~~~~------- 98 (233)
+++. -++|+|. |.|+..++.
T Consensus 110 DT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGL 189 (814)
T COG1201 110 DTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGL 189 (814)
T ss_pred CCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEee
Confidence 8765 3445555 111100000
Q ss_pred -------------------------------------------------------H-HHhcCCCCeEEEEecchhHHHHH
Q psy14082 99 -------------------------------------------------------Y-EMAKNPAFKVIVFVETKKKVEDI 122 (233)
Q Consensus 99 -------------------------------------------------------~-~~~~~~~~k~iIf~~~~~~~~~l 122 (233)
. .........++||+||+..++.+
T Consensus 190 SATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l 269 (814)
T COG1201 190 SATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKKHRTTLIFTNTRSGAERL 269 (814)
T ss_pred hhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHH
Confidence 0 11222444899999999999999
Q ss_pred HHHHhhCC-CeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCcc---cccceee
Q psy14082 123 TRALRRER-HSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSAN---HNISQVI 195 (233)
Q Consensus 123 ~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~---~~i~~~~ 195 (233)
+..|++.+ ..+..+||+++.+.|..+.++|++|+.+.+|||+.++-|||+.++|.||+|+.|.+.+ |+|||++
T Consensus 270 ~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsg 346 (814)
T COG1201 270 AFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAG 346 (814)
T ss_pred HHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccc
Confidence 99999887 8899999999999999999999999999999999999999999999999999999987 6665443
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.96 E-value=1.3e-28 Score=229.81 Aligned_cols=170 Identities=19% Similarity=0.144 Sum_probs=141.1
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhc--CCcEEEEEcCCCC---
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSS--ALRNICIFGGTPK--- 82 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~--~~~~~~~~gg~~~--- 82 (233)
+.|.+++|+||||||++|++|++..+. .+.+++||+||++||.|+++.+++++. ++++..++|+.+.
T Consensus 472 ~~d~Ll~adTGsGKT~val~a~l~al~--------~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~ 543 (926)
T TIGR00580 472 PMDRLVCGDVGFGKTEVAMRAAFKAVL--------DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQ 543 (926)
T ss_pred cCCEEEECCCCccHHHHHHHHHHHHHH--------hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHH
Confidence 479999999999999999999998874 357899999999999999999999843 5677888887542
Q ss_pred ----------CCeeEEeccc------------------------------------------------------------
Q psy14082 83 ----------GPQDCLPLHR------------------------------------------------------------ 92 (233)
Q Consensus 83 ----------~~~~lv~l~r------------------------------------------------------------ 92 (233)
+.+++||-.+
T Consensus 544 ~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVIDEahrfgv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d 623 (926)
T TIGR00580 544 NEILKELASGKIDILIGTHKLLQKDVKFKDLGLLIIDEEQRFGVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRD 623 (926)
T ss_pred HHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEeecccccchhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCC
Confidence 3567777000
Q ss_pred -----------------hhh----hchHH--HhcCCCCeEEEEecchhHHHHHHHHHhhC--CCeeEEEeCCCCHHHHHH
Q psy14082 93 -----------------FVF----NCQYE--MAKNPAFKVIVFVETKKKVEDITRALRRE--RHSAICIHGDKTQQDRDY 147 (233)
Q Consensus 93 -----------------~~~----~~~~~--~~~~~~~k~iIf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~ 147 (233)
+.. .+.+. .....++++++||+++++++.+++.|++. ++++..+||+|++++|..
T Consensus 624 ~s~I~~~p~~R~~V~t~v~~~~~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~ 703 (926)
T TIGR00580 624 LSIIATPPEDRLPVRTFVMEYDPELVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEE 703 (926)
T ss_pred cEEEecCCCCccceEEEEEecCHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Confidence 000 00000 11235689999999999999999999885 789999999999999999
Q ss_pred HHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCC
Q psy14082 148 VLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQL 185 (233)
Q Consensus 148 ~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~ 185 (233)
++++|++|+.+|||||+++++|+|+|++++||++|.|.
T Consensus 704 im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~ 741 (926)
T TIGR00580 704 VMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADK 741 (926)
T ss_pred HHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCC
Confidence 99999999999999999999999999999999999875
No 45
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.96 E-value=9.6e-29 Score=234.91 Aligned_cols=186 Identities=17% Similarity=0.116 Sum_probs=145.3
Q ss_pred CCCCCCCC------CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhc--CCc
Q psy14082 1 MLPPSESG------CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSS--ALR 72 (233)
Q Consensus 1 aip~~~~g------~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~--~~~ 72 (233)
|||.++.+ .|++++++||+|||.+|+.+++..+. .+.+++||+||++||.|+++.+++.+. +++
T Consensus 608 aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~--------~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~ 679 (1147)
T PRK10689 608 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE--------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 679 (1147)
T ss_pred HHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH--------cCCeEEEEeCcHHHHHHHHHHHHHhhccCCce
Confidence 34555555 89999999999999999988877653 477899999999999999999998643 567
Q ss_pred EEEEEcCCCC-------------CCeeEEeccc-----------------------------------------------
Q psy14082 73 NICIFGGTPK-------------GPQDCLPLHR----------------------------------------------- 92 (233)
Q Consensus 73 ~~~~~gg~~~-------------~~~~lv~l~r----------------------------------------------- 92 (233)
+.++.|+.+. ..+++||-.+
T Consensus 680 i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVIDEahrfG~~~~e~lk~l~~~~qvLl~SATpi 759 (1147)
T PRK10689 680 IEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPI 759 (1147)
T ss_pred EEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEEechhhcchhHHHHHHhcCCCCcEEEEcCCCC
Confidence 7788876443 3466777000
Q ss_pred -----------------------------hhhh-----c-hH-HHhcCCCCeEEEEecchhHHHHHHHHHhhC--CCeeE
Q psy14082 93 -----------------------------FVFN-----C-QY-EMAKNPAFKVIVFVETKKKVEDITRALRRE--RHSAI 134 (233)
Q Consensus 93 -----------------------------~~~~-----~-~~-~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~--~~~~~ 134 (233)
++.. . .. ...-..++++++|||+++.++.+++.|.+. +.++.
T Consensus 760 prtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~ 839 (1147)
T PRK10689 760 PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIA 839 (1147)
T ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEE
Confidence 0000 0 00 111224579999999999999999999887 78899
Q ss_pred EEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEE-----EecCCCCcccccceee
Q psy14082 135 CIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVN-----IGSLQLSANHNISQVI 195 (233)
Q Consensus 135 ~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI-----~~d~P~~~~~~i~~~~ 195 (233)
.+||+|++++|.+++++|++|+.+|||||+++++|+|+|++++|| |||+|. .-|++||++
T Consensus 840 ~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq-~~Qr~GRvG 904 (1147)
T PRK10689 840 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ-LHQLRGRVG 904 (1147)
T ss_pred EEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHH-HHHHhhccC
Confidence 999999999999999999999999999999999999999999999 666653 335555443
No 46
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.96 E-value=7.6e-28 Score=230.74 Aligned_cols=179 Identities=20% Similarity=0.168 Sum_probs=140.3
Q ss_pred EecCCCCCchHHhHHHHHHhhhccCCC-----CCCCCceEEEEcCcHHHHHHHHHHHHHh--------------hcCCcE
Q psy14082 13 SKITNYLLSPPQYMLPAAVHISHQEPV-----KQGDGPIALVLAPTRELAQQIQTVAKEF--------------SSALRN 73 (233)
Q Consensus 13 ~~a~tGsGKT~~~~lp~l~~l~~~~~~-----~~~~~~~~lil~PtreL~~Q~~~~~~~~--------------~~~~~~ 73 (233)
++||||||||++|.+|++++++..... ...++.++|||+|+|+|+.|+++.++.. ..++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 479999999999999999999865311 1134689999999999999999998752 136789
Q ss_pred EEEEcCCCC---------CCeeEEe-------------------------------------------ccc---------
Q psy14082 74 ICIFGGTPK---------GPQDCLP-------------------------------------------LHR--------- 92 (233)
Q Consensus 74 ~~~~gg~~~---------~~~~lv~-------------------------------------------l~r--------- 92 (233)
...+|+.+. .++|+|+ +.|
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 999998664 3567777 000
Q ss_pred -----------------hh--------------------------hhc-------------------------h-HHH-h
Q psy14082 93 -----------------FV--------------------------FNC-------------------------Q-YEM-A 102 (233)
Q Consensus 93 -----------------~~--------------------------~~~-------------------------~-~~~-~ 102 (233)
++ +.. . ..+ .
T Consensus 161 QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~ 240 (1490)
T PRK09751 161 QRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDE 240 (1490)
T ss_pred eEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHH
Confidence 00 000 0 000 0
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhhCC---------------------------------CeeEEEeCCCCHHHHHHHH
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRRER---------------------------------HSAICIHGDKTQQDRDYVL 149 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~~~---------------------------------~~~~~~~~~~~~~~r~~~~ 149 (233)
.....++||||||++.++.++..|.+.. ..+.++||+|++++|..+.
T Consensus 241 i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE 320 (1490)
T PRK09751 241 VLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITE 320 (1490)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHH
Confidence 1235789999999999999999997531 1256789999999999999
Q ss_pred HHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc
Q psy14082 150 NDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI 191 (233)
Q Consensus 150 ~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i 191 (233)
+.|++|+.++||||+.+++|||++++++|||||.|.+...|+
T Consensus 321 ~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~L 362 (1490)
T PRK09751 321 QALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGL 362 (1490)
T ss_pred HHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHH
Confidence 999999999999999999999999999999999999988555
No 47
>PRK09401 reverse gyrase; Reviewed
Probab=99.95 E-value=7.3e-28 Score=229.39 Aligned_cols=186 Identities=15% Similarity=0.166 Sum_probs=142.4
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh--cCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS--SALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~--~~~~~~~~~g 78 (233)
++|.++.|+|++++||||||||+ |++|++..+.. +++++|||+|||||+.|+++.++.+. .++.+..++|
T Consensus 88 ~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g 159 (1176)
T PRK09401 88 WAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYY 159 (1176)
T ss_pred HHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEc
Confidence 46788999999999999999995 67776665532 37899999999999999999999993 3566777776
Q ss_pred CCC---------------CCCeeEEe----------------------------cc------c------h--------hh
Q psy14082 79 GTP---------------KGPQDCLP----------------------------LH------R------F--------VF 95 (233)
Q Consensus 79 g~~---------------~~~~~lv~----------------------------l~------r------~--------~~ 95 (233)
+.+ .+.+++|+ ++ + + ..
T Consensus 160 ~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~ 239 (1176)
T PRK09401 160 HSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAME 239 (1176)
T ss_pred cCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHH
Confidence 643 13567777 10 0 0 00
Q ss_pred hch-------------------------H---------------------------------------------------
Q psy14082 96 NCQ-------------------------Y--------------------------------------------------- 99 (233)
Q Consensus 96 ~~~-------------------------~--------------------------------------------------- 99 (233)
.+. .
T Consensus 240 ~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~~yi~~~~k~~~ 319 (1176)
T PRK09401 240 LIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVDSYIVDEDSVEK 319 (1176)
T ss_pred hcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCcccccCCceEEEEEcccHHHH
Confidence 000 0
Q ss_pred --HHhcCCCCeEEEEecchhH---HHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEe----cccCcCCc
Q psy14082 100 --EMAKNPAFKVIVFVETKKK---VEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVA----TDVAARGL 170 (233)
Q Consensus 100 --~~~~~~~~k~iIf~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~----T~~~~~Gl 170 (233)
.+....+.++||||++++. ++.+++.|.+.|+++..+||+| ...+++|++|+.+|||| ||+++||+
T Consensus 320 L~~ll~~l~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGI 394 (1176)
T PRK09401 320 LVELVKRLGDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGI 394 (1176)
T ss_pred HHHHHHhcCCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecC
Confidence 1112234689999999888 9999999999999999999999 23459999999999999 69999999
Q ss_pred CCCC-ccEEEEecCCC------Ccc---cccceeeEEee
Q psy14082 171 DVED-VNTVNIGSLQL------SAN---HNISQVIEVVQ 199 (233)
Q Consensus 171 di~~-v~~VI~~d~P~------~~~---~~i~~~~~~~~ 199 (233)
|+|+ +++|||||+|. ..+ |++++..++..
T Consensus 395 DiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~~~ 433 (1176)
T PRK09401 395 DLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSLLP 433 (1176)
T ss_pred CCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhhcc
Confidence 9999 89999999998 333 45555554444
No 48
>PRK02362 ski2-like helicase; Provisional
Probab=99.95 E-value=2.1e-27 Score=220.19 Aligned_cols=182 Identities=16% Similarity=0.158 Sum_probs=144.5
Q ss_pred CCC-CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh-cCCcEEEEEcC
Q psy14082 2 LPP-SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS-SALRNICIFGG 79 (233)
Q Consensus 2 ip~-~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~-~~~~~~~~~gg 79 (233)
+|. +..|+|++++||||||||++|.+|+++++. ++.++||++|+++||.|+++.++++. .++++..++|+
T Consensus 32 i~~~~~~g~nvlv~APTGSGKTlia~lail~~l~--------~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd 103 (737)
T PRK02362 32 VEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA--------RGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGD 103 (737)
T ss_pred HHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh--------cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 444 578999999999999999999999999884 25689999999999999999999873 37889999998
Q ss_pred CCC------CCeeEEe--------cc----------------------------------c-------------------
Q psy14082 80 TPK------GPQDCLP--------LH----------------------------------R------------------- 92 (233)
Q Consensus 80 ~~~------~~~~lv~--------l~----------------------------------r------------------- 92 (233)
.+. +.+++|+ ++ |
T Consensus 104 ~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n 183 (737)
T PRK02362 104 YDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGN 183 (737)
T ss_pred cCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC
Confidence 654 3456666 00 0
Q ss_pred ------hhh--------------------------------------hchHHH--hcCCCCeEEEEecchhHHHHHHHHH
Q psy14082 93 ------FVF--------------------------------------NCQYEM--AKNPAFKVIVFVETKKKVEDITRAL 126 (233)
Q Consensus 93 ------~~~--------------------------------------~~~~~~--~~~~~~k~iIf~~~~~~~~~l~~~L 126 (233)
++. .....+ ....++++||||++++.++.++..|
T Consensus 184 ~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L 263 (737)
T PRK02362 184 ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRA 263 (737)
T ss_pred HHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHH
Confidence 000 000001 1125679999999999999998888
Q ss_pred hhCC------------------------------------CeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCc
Q psy14082 127 RRER------------------------------------HSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGL 170 (233)
Q Consensus 127 ~~~~------------------------------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gl 170 (233)
.+.. ..+.++|++|++.+|..+.+.|++|.++|||||+.+++|+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~Gv 343 (737)
T PRK02362 264 ASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGL 343 (737)
T ss_pred HHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhc
Confidence 6431 3578899999999999999999999999999999999999
Q ss_pred CCCCccEEEE----ec-----CCCCccccc
Q psy14082 171 DVEDVNTVNI----GS-----LQLSANHNI 191 (233)
Q Consensus 171 di~~v~~VI~----~d-----~P~~~~~~i 191 (233)
|+|++++||+ || .|-+..+|.
T Consensus 344 nlPa~~VVI~~~~~yd~~~g~~~~s~~~y~ 373 (737)
T PRK02362 344 NLPARRVIIRDYRRYDGGAGMQPIPVLEYH 373 (737)
T ss_pred CCCceEEEEecceeecCCCCceeCCHHHHH
Confidence 9999999998 77 466665444
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.95 E-value=5.1e-27 Score=213.84 Aligned_cols=170 Identities=18% Similarity=0.204 Sum_probs=137.1
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhc--CCcEEEEEcCCCC----
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSS--ALRNICIFGGTPK---- 82 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~--~~~~~~~~gg~~~---- 82 (233)
.+.+++++||||||++|++|++..+. .+.+++|++||++||.|+++.+++++. ++++.+++|+.+.
T Consensus 257 ~~~Ll~g~TGSGKT~va~l~il~~~~--------~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~ 328 (630)
T TIGR00643 257 MNRLLQGDVGSGKTLVAALAMLAAIE--------AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRK 328 (630)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHHHH--------cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHH
Confidence 35799999999999999999998873 467899999999999999999999844 6899999998653
Q ss_pred ---------CCeeEEe----------ccc-------------------h-------------------------------
Q psy14082 83 ---------GPQDCLP----------LHR-------------------F------------------------------- 93 (233)
Q Consensus 83 ---------~~~~lv~----------l~r-------------------~------------------------------- 93 (233)
+.+++|| +++ +
T Consensus 329 ~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVIDEaH~fg~~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~ 408 (630)
T TIGR00643 329 ELLETIASGQIHLVVGTHALIQEKVEFKRLALVIIDEQHRFGVEQRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGD 408 (630)
T ss_pred HHHHHHhCCCCCEEEecHHHHhccccccccceEEEechhhccHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCC
Confidence 2356666 000 0
Q ss_pred -----hhhc-----------------hH---HHh--cCCCCeEEEEecch--------hHHHHHHHHHhhC--CCeeEEE
Q psy14082 94 -----VFNC-----------------QY---EMA--KNPAFKVIVFVETK--------KKVEDITRALRRE--RHSAICI 136 (233)
Q Consensus 94 -----~~~~-----------------~~---~~~--~~~~~k~iIf~~~~--------~~~~~l~~~L~~~--~~~~~~~ 136 (233)
++.. .. .+. ...+.+++|||+.. ..++.+++.|.+. ++.+..+
T Consensus 409 l~~~~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~l 488 (630)
T TIGR00643 409 LDTSIIDELPPGRKPITTVLIKHDEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLL 488 (630)
T ss_pred cceeeeccCCCCCCceEEEEeCcchHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEE
Confidence 0000 00 111 13567899999876 4566777777653 6789999
Q ss_pred eCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCC
Q psy14082 137 HGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLS 186 (233)
Q Consensus 137 ~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~ 186 (233)
||+|++++|..++++|++|+.+|||||+++++|+|+|++++||+||.|..
T Consensus 489 HG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~ 538 (630)
T TIGR00643 489 HGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERF 538 (630)
T ss_pred eCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcC
Confidence 99999999999999999999999999999999999999999999999974
No 50
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.4e-26 Score=207.33 Aligned_cols=96 Identities=18% Similarity=0.178 Sum_probs=79.5
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCC---Ccc-----
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVE---DVN----- 176 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~---~v~----- 176 (233)
.+.++||||+|++.++.++..|.+.|+++..+||++++ |+..+..|+.+...|+||||+++||+|++ +|.
T Consensus 472 ~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGL 549 (656)
T PRK12898 472 QGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGL 549 (656)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCC
Confidence 45789999999999999999999999999999998664 44555566666678999999999999999 676
Q ss_pred EEEEecCCCCccccc------------ceeeEEeecch
Q psy14082 177 TVNIGSLQLSANHNI------------SQVIEVVQDYE 202 (233)
Q Consensus 177 ~VI~~d~P~~~~~~i------------~~~~~~~~~~~ 202 (233)
+|||||+|.|...|+ |.++.+++..+
T Consensus 550 hVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 550 HVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred EEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 999999999986444 34556777544
No 51
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=8.1e-26 Score=192.48 Aligned_cols=117 Identities=27% Similarity=0.369 Sum_probs=95.2
Q ss_pred hchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCCeeE-EEe--------CCCCHHHHHHHHHHhhCCCCCEEEecccC
Q psy14082 96 NCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERHSAI-CIH--------GDKTQQDRDYVLNDFRQGKAPILVATDVA 166 (233)
Q Consensus 96 ~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~-~~~--------~~~~~~~r~~~~~~f~~g~~~iLv~T~~~ 166 (233)
++.+.+.++.+.++|||++.+++++.+.+.|.+.+.++. .+- .||+++++.+++++|++|++++||||+++
T Consensus 356 ilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVg 435 (542)
T COG1111 356 ILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVG 435 (542)
T ss_pred HHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccc
Confidence 333366777889999999999999999999999987774 333 36999999999999999999999999999
Q ss_pred cCCcCCCCccEEEEecCCCCccccc-----------ceeeEEeecch-HHHHHHHHHH
Q psy14082 167 ARGLDVEDVNTVNIGSLQLSANHNI-----------SQVIEVVQDYE-KEKRLFSLIR 212 (233)
Q Consensus 167 ~~Gldi~~v~~VI~~d~P~~~~~~i-----------~~~~~~~~~~~-~~~~~~~~i~ 212 (233)
++|+|+|++|.||.|++-.|+..+| |+++-++.+.. ++.+.+..++
T Consensus 436 EEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~r~Grv~vLvt~gtrdeayy~~s~r 493 (542)
T COG1111 436 EEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRKRKGRVVVLVTEGTRDEAYYYSSRR 493 (542)
T ss_pred cccCCCCcccEEEEecCCcHHHHHHHhhCccccCCCCeEEEEEecCchHHHHHHHHHH
Confidence 9999999999999999988876444 67777776542 3344443333
No 52
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.94 E-value=2.8e-26 Score=204.16 Aligned_cols=189 Identities=14% Similarity=0.148 Sum_probs=143.2
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh--cCCcEEEEEcC
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS--SALRNICIFGG 79 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~--~~~~~~~~~gg 79 (233)
++.++.+.+.++++|||+|||+++.. +...+.. ....++||||||+||+.||.+.++++. +...+..+.||
T Consensus 123 v~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~------~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g 195 (501)
T PHA02558 123 VYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLE------NYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSG 195 (501)
T ss_pred HHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHh------cCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecC
Confidence 45667788999999999999997543 3322222 224489999999999999999999982 33455566666
Q ss_pred CCCC--CeeEEe---------------------------------------------------ccc--------------
Q psy14082 80 TPKG--PQDCLP---------------------------------------------------LHR-------------- 92 (233)
Q Consensus 80 ~~~~--~~~lv~---------------------------------------------------l~r-------------- 92 (233)
.... .+++|+ +.+
T Consensus 196 ~~~~~~~~I~VaT~qsl~~~~~~~~~~~~~iIvDEaH~~~~~~~~~il~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG~ 275 (501)
T PHA02558 196 TAKDTDAPIVVSTWQSAVKQPKEWFDQFGMVIVDECHLFTGKSLTSIITKLDNCKFKFGLTGSLRDGKANILQYVGLFGD 275 (501)
T ss_pred cccCCCCCEEEeeHHHHhhchhhhccccCEEEEEchhcccchhHHHHHHhhhccceEEEEeccCCCccccHHHHHHhhCC
Confidence 5542 456555 000
Q ss_pred ---------hh---------------h--------------------hchH---------H--HhcCCCCeEEEEecchh
Q psy14082 93 ---------FV---------------F--------------------NCQY---------E--MAKNPAFKVIVFVETKK 117 (233)
Q Consensus 93 ---------~~---------------~--------------------~~~~---------~--~~~~~~~k~iIf~~~~~ 117 (233)
++ . ++.. . .....+.+++|||++.+
T Consensus 276 i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~ 355 (501)
T PHA02558 276 IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVE 355 (501)
T ss_pred ceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHH
Confidence 00 0 0000 0 01124578999999999
Q ss_pred HHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEec-ccCcCCcCCCCccEEEEecCCCCcc---cccce
Q psy14082 118 KVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVAT-DVAARGLDVEDVNTVNIGSLQLSAN---HNISQ 193 (233)
Q Consensus 118 ~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T-~~~~~Gldi~~v~~VI~~d~P~~~~---~~i~~ 193 (233)
+++.+++.|.+.+.++..+||+|++++|..+++.|++|+..+|||| +++++|+|+|++++||++++|.|.. ||+||
T Consensus 356 h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR 435 (501)
T PHA02558 356 HGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGR 435 (501)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhc
Confidence 9999999999999999999999999999999999999999999998 8999999999999999999999876 55555
Q ss_pred eeEE
Q psy14082 194 VIEV 197 (233)
Q Consensus 194 ~~~~ 197 (233)
+.+.
T Consensus 436 ~~R~ 439 (501)
T PHA02558 436 VLRK 439 (501)
T ss_pred cccC
Confidence 4443
No 53
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.94 E-value=9.3e-27 Score=212.82 Aligned_cols=183 Identities=16% Similarity=0.201 Sum_probs=137.5
Q ss_pred CCCCCCCCC-ceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEE-EcCcHHHHHHHHHHHHHhhc---------
Q psy14082 1 MLPPSESGC-QNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALV-LAPTRELAQQIQTVAKEFSS--------- 69 (233)
Q Consensus 1 aip~~~~g~-d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~li-l~PtreL~~Q~~~~~~~~~~--------- 69 (233)
+||.++.|+ ++++++|||||||++|+++.+. +... ...++.|| ++|||||+.|+++.++++..
T Consensus 23 ~i~~il~G~~~v~~~apTGSGKTaa~aafll~-~~~~-----~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~ 96 (844)
T TIGR02621 23 LAERFVAGQPPESCSTPTGLGKTSIIAAWLLA-VEIG-----AKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVE 96 (844)
T ss_pred HHHHHHcCCCcceEecCCCCcccHHHHHhhcc-cccc-----ccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhh
Confidence 467788998 5788899999999987655553 2221 34566666 66999999999999999932
Q ss_pred ----------------CCcEEEEEcCCCC---------CCeeEEe---------cc------------------c-----
Q psy14082 70 ----------------ALRNICIFGGTPK---------GPQDCLP---------LH------------------R----- 92 (233)
Q Consensus 70 ----------------~~~~~~~~gg~~~---------~~~~lv~---------l~------------------r----- 92 (233)
++++..++||.+. .++++|| |. +
T Consensus 97 ~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LV 176 (844)
T TIGR02621 97 AALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIV 176 (844)
T ss_pred hhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccceEEE
Confidence 3788999999776 3455666 10 0
Q ss_pred ----------------hhhhc---h-----H-------------------------------------------------
Q psy14082 93 ----------------FVFNC---Q-----Y------------------------------------------------- 99 (233)
Q Consensus 93 ----------------~~~~~---~-----~------------------------------------------------- 99 (233)
+...+ . +
T Consensus 177 LDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v~v~~e~K 256 (844)
T TIGR02621 177 HDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVPPSDEKF 256 (844)
T ss_pred EehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEEEecChHHH
Confidence 11100 0 0
Q ss_pred ---------HHhcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHH-----HHHHHhhC----CC-----
Q psy14082 100 ---------EMAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRD-----YVLNDFRQ----GK----- 156 (233)
Q Consensus 100 ---------~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~-----~~~~~f~~----g~----- 156 (233)
......+.++||||||++.++.+++.|++.++ ..+||+|++.+|. .++++|++ |.
T Consensus 257 l~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~ 334 (844)
T TIGR02621 257 LSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQ 334 (844)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhcccccccccccc
Confidence 01123567899999999999999999998887 8999999999999 78999987 43
Q ss_pred --CCEEEecccCcCCcCCCCccEEEEecCCCC-cccccc
Q psy14082 157 --APILVATDVAARGLDVEDVNTVNIGSLQLS-ANHNIS 192 (233)
Q Consensus 157 --~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~-~~~~i~ 192 (233)
.+|||||+++++|+|++. ++||++..|.+ ..|++|
T Consensus 335 ~g~~ILVATdVaerGLDId~-d~VI~d~aP~esyIQRiG 372 (844)
T TIGR02621 335 QGTVYLVCTSAGEVGVNISA-DHLVCDLAPFESMQQRFG 372 (844)
T ss_pred ccceEEeccchhhhcccCCc-ceEEECCCCHHHHHHHhc
Confidence 679999999999999986 89999887742 235554
No 54
>PRK00254 ski2-like helicase; Provisional
Probab=99.94 E-value=1.8e-26 Score=213.51 Aligned_cols=186 Identities=16% Similarity=0.148 Sum_probs=143.7
Q ss_pred CCC-CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh-hcCCcEEEEEcC
Q psy14082 2 LPP-SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF-SSALRNICIFGG 79 (233)
Q Consensus 2 ip~-~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~-~~~~~~~~~~gg 79 (233)
+|. +..|+|++++||||||||++|.+|+++++.. .+.++|+|+|+++|+.|+++.+..+ ..++++..++|+
T Consensus 32 i~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-------~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd 104 (720)
T PRK00254 32 LKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-------EGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGD 104 (720)
T ss_pred HHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-------cCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 443 6789999999999999999999999998864 2568999999999999999999887 347889999998
Q ss_pred CCC------CCeeEEe--------cc-------c----------------------------------------------
Q psy14082 80 TPK------GPQDCLP--------LH-------R---------------------------------------------- 92 (233)
Q Consensus 80 ~~~------~~~~lv~--------l~-------r---------------------------------------------- 92 (233)
.+. +.+++|+ ++ +
T Consensus 105 ~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n~~~ 184 (720)
T PRK00254 105 YDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVGNAEE 184 (720)
T ss_pred CCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCCCHHH
Confidence 764 2456666 00 0
Q ss_pred hhh------------------------------------------hchHHHhcCCCCeEEEEecchhHHHHHHHHHhhC-
Q psy14082 93 FVF------------------------------------------NCQYEMAKNPAFKVIVFVETKKKVEDITRALRRE- 129 (233)
Q Consensus 93 ~~~------------------------------------------~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~- 129 (233)
+.. .+.+. -..+.++||||+|++.++.++..|.+.
T Consensus 185 la~wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~vLVF~~sr~~~~~~a~~l~~~~ 262 (720)
T PRK00254 185 LAEWLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDA--VKKGKGALVFVNTRRSAEKEALELAKKI 262 (720)
T ss_pred HHHHhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHH--HHhCCCEEEEEcChHHHHHHHHHHHHHH
Confidence 000 00000 113578999999999999888776421
Q ss_pred --------------------------------CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccE
Q psy14082 130 --------------------------------RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNT 177 (233)
Q Consensus 130 --------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~ 177 (233)
...+.++|++|++++|..+.+.|++|.++|||||+.+++|+|+|++++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~v 342 (720)
T PRK00254 263 KRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRV 342 (720)
T ss_pred HHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEE
Confidence 225889999999999999999999999999999999999999999999
Q ss_pred EEE-------ecCCCCc----ccccceeeE
Q psy14082 178 VNI-------GSLQLSA----NHNISQVIE 196 (233)
Q Consensus 178 VI~-------~d~P~~~----~~~i~~~~~ 196 (233)
||. |+.|.-+ .|++||+++
T Consensus 343 VI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR 372 (720)
T PRK00254 343 IIRDTKRYSNFGWEDIPVLEIQQMMGRAGR 372 (720)
T ss_pred EECCceEcCCCCceeCCHHHHHHhhhccCC
Confidence 994 5555422 355555544
No 55
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.2e-25 Score=205.33 Aligned_cols=97 Identities=15% Similarity=0.187 Sum_probs=85.2
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCC---CCcc----
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDV---EDVN---- 176 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi---~~v~---- 176 (233)
..+.++||||+|++.++.++..|.+.|+++..+||+++++++..+.++++.| +|+||||+++||+|+ |+|.
T Consensus 426 ~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GG 503 (790)
T PRK09200 426 ETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGG 503 (790)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccC
Confidence 4688999999999999999999999999999999999999888888887766 799999999999999 6998
Q ss_pred -EEEEecCCCCccccc------------ceeeEEeecch
Q psy14082 177 -TVNIGSLQLSANHNI------------SQVIEVVQDYE 202 (233)
Q Consensus 177 -~VI~~d~P~~~~~~i------------~~~~~~~~~~~ 202 (233)
+||+||+|.|...|+ |.++.|++..+
T Consensus 504 L~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 504 LAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred cEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 999999999987555 34456777644
No 56
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.94 E-value=3.7e-26 Score=217.98 Aligned_cols=174 Identities=17% Similarity=0.227 Sum_probs=137.8
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhc--CCcEE---E
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSS--ALRNI---C 75 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~--~~~~~---~ 75 (233)
++|.++.|+|++++||||||||+ |++|++..+.. .++++|||+||||||.|+++.++.+.. ++.+. .
T Consensus 86 ~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~ 157 (1171)
T TIGR01054 86 WAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGA 157 (1171)
T ss_pred HHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeee
Confidence 46788999999999999999996 78888776643 368999999999999999999999943 44433 4
Q ss_pred EEcCCCC-------------CCeeEEe---------------------------cc------c------h----hhh---
Q psy14082 76 IFGGTPK-------------GPQDCLP---------------------------LH------R------F----VFN--- 96 (233)
Q Consensus 76 ~~gg~~~-------------~~~~lv~---------------------------l~------r------~----~~~--- 96 (233)
++||.+. +++++|+ +. + + +..
T Consensus 158 ~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~ 237 (1171)
T TIGR01054 158 YHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWK 237 (1171)
T ss_pred ecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHH
Confidence 5677543 2566776 10 0 0 000
Q ss_pred -----------------------chH------------------------------------------------------
Q psy14082 97 -----------------------CQY------------------------------------------------------ 99 (233)
Q Consensus 97 -----------------------~~~------------------------------------------------------ 99 (233)
+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I~~~~~~~~~~~~~ 317 (1171)
T TIGR01054 238 LIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSDTLRNVVDVYVEDEDLKET 317 (1171)
T ss_pred HhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCccccccceEEEEEecccHHHH
Confidence 000
Q ss_pred --HHhcCCCCeEEEEecch---hHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEe----cccCcCCc
Q psy14082 100 --EMAKNPAFKVIVFVETK---KKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVA----TDVAARGL 170 (233)
Q Consensus 100 --~~~~~~~~k~iIf~~~~---~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~----T~~~~~Gl 170 (233)
.+....+.++||||+++ +.++.++..|.+.|+++..+||+|++ .++++|++|+.++||| ||+++||+
T Consensus 318 L~~ll~~l~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGI 393 (1171)
T TIGR01054 318 LLEIVKKLGTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGL 393 (1171)
T ss_pred HHHHHHHcCCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccC
Confidence 11122346799999999 99999999999999999999999973 6899999999999999 59999999
Q ss_pred CCCC-ccEEEEecCCCC
Q psy14082 171 DVED-VNTVNIGSLQLS 186 (233)
Q Consensus 171 di~~-v~~VI~~d~P~~ 186 (233)
|+|+ |++|||||+|..
T Consensus 394 Dip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 394 DLPERVRYAVFLGVPKF 410 (1171)
T ss_pred CCCccccEEEEECCCCE
Confidence 9999 899999999976
No 57
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=1.3e-25 Score=197.98 Aligned_cols=187 Identities=20% Similarity=0.234 Sum_probs=149.8
Q ss_pred CCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCC
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPK 82 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~ 82 (233)
-.+++|+|+++..|||+||++||.+|.+-. .| -+||++|...|.....+.++.. ++.+..+.+..+.
T Consensus 27 ~~~l~g~d~lvvmPTGgGKSlCyQiPAll~----------~G-~TLVVSPLiSLM~DQV~~l~~~--Gi~A~~lnS~l~~ 93 (590)
T COG0514 27 DALLSGKDTLVVMPTGGGKSLCYQIPALLL----------EG-LTLVVSPLISLMKDQVDQLEAA--GIRAAYLNSTLSR 93 (590)
T ss_pred HHHHcCCcEEEEccCCCCcchHhhhHHHhc----------CC-CEEEECchHHHHHHHHHHHHHc--CceeehhhcccCH
Confidence 346789999999999999999999999853 23 6899999888888777777766 6888888877554
Q ss_pred CCee--------------EEe-----------------------------------------------------------
Q psy14082 83 GPQD--------------CLP----------------------------------------------------------- 89 (233)
Q Consensus 83 ~~~~--------------lv~----------------------------------------------------------- 89 (233)
++.. .++
T Consensus 94 ~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlT 173 (590)
T COG0514 94 EERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALT 173 (590)
T ss_pred HHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEe
Confidence 2211 222
Q ss_pred --------------------------ccc---hhhhch------H--HHh---cCCCCeEEEEecchhHHHHHHHHHhhC
Q psy14082 90 --------------------------LHR---FVFNCQ------Y--EMA---KNPAFKVIVFVETKKKVEDITRALRRE 129 (233)
Q Consensus 90 --------------------------l~r---~~~~~~------~--~~~---~~~~~k~iIf~~~~~~~~~l~~~L~~~ 129 (233)
..| .+.+.. + .+. .......||||.|++.++.+++.|.+.
T Consensus 174 ATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~ 253 (590)
T COG0514 174 ATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRKN 253 (590)
T ss_pred CCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHHC
Confidence 000 111110 0 122 445566899999999999999999999
Q ss_pred CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc---c---------eeeEE
Q psy14082 130 RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI---S---------QVIEV 197 (233)
Q Consensus 130 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i---~---------~~~~~ 197 (233)
|+++..+|+||+.++|..+-++|..++.+|+|||.+++.|||-|+|.+|||||+|.|.+.|. | .++.+
T Consensus 254 g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill 333 (590)
T COG0514 254 GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILL 333 (590)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999888 2 55667
Q ss_pred eecch
Q psy14082 198 VQDYE 202 (233)
Q Consensus 198 ~~~~~ 202 (233)
+++.+
T Consensus 334 ~~~~D 338 (590)
T COG0514 334 YSPED 338 (590)
T ss_pred ecccc
Confidence 77644
No 58
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.93 E-value=2.6e-25 Score=190.56 Aligned_cols=91 Identities=16% Similarity=0.305 Sum_probs=76.8
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCCC--eeEEEeCCCCHHHHHHH----HHHhhCCCCCEEEecccCcCCcCCCCccEE
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRERH--SAICIHGDKTQQDRDYV----LNDFRQGKAPILVATDVAARGLDVEDVNTV 178 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~~----~~~f~~g~~~iLv~T~~~~~Gldi~~v~~V 178 (233)
.+.++||||+++++++.+++.|++.+. .+..+||+|++.+|.+. ++.|++|..++||||+++++|+|++ +++|
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~v 299 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVM 299 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEE
Confidence 568999999999999999999988765 58999999999999764 8899999999999999999999995 8999
Q ss_pred EEecCCCC-cccccceeeE
Q psy14082 179 NIGSLQLS-ANHNISQVIE 196 (233)
Q Consensus 179 I~~d~P~~-~~~~i~~~~~ 196 (233)
|+++.|.+ ..|++||+++
T Consensus 300 i~~~~~~~~~iqr~GR~gR 318 (358)
T TIGR01587 300 ITELAPIDSLIQRLGRLHR 318 (358)
T ss_pred EEcCCCHHHHHHHhccccC
Confidence 99887732 1244444444
No 59
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.93 E-value=2.1e-25 Score=202.18 Aligned_cols=180 Identities=13% Similarity=0.101 Sum_probs=134.8
Q ss_pred CCCCCCCCceeEecCCCCCchHH---------hHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh-----
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQ---------YMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF----- 67 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~---------~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~----- 67 (233)
+|.+..|+|++++|+||||||.+ |++|.+..+.... ....+.+++|++||||||.|+...+.+.
T Consensus 173 l~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~~vg~~~ 250 (675)
T PHA02653 173 FEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLKSLGFDE 250 (675)
T ss_pred HHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHHHhCccc
Confidence 46778999999999999999987 5556665553211 0134568999999999999999999875
Q ss_pred hcCCcEEEEEcCCCC--------CCeeEEe--------cc--------------------------------c-------
Q psy14082 68 SSALRNICIFGGTPK--------GPQDCLP--------LH--------------------------------R------- 92 (233)
Q Consensus 68 ~~~~~~~~~~gg~~~--------~~~~lv~--------l~--------------------------------r------- 92 (233)
+.+..+...+||.+. ..+++++ ++ +
T Consensus 251 ~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~rq~ILmSAT 330 (675)
T PHA02653 251 IDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDKIRSLFLMTAT 330 (675)
T ss_pred cCCceEEEEECCcchHHhhcccCCCCEEEEeCcccccccccCCEEEccccccCccchhHHHHHHHHhhhhcCEEEEEccC
Confidence 235667888888753 1234555 00 0
Q ss_pred -------------------------------hhhh----------ch-------HHHh---cCCCCeEEEEecchhHHHH
Q psy14082 93 -------------------------------FVFN----------CQ-------YEMA---KNPAFKVIVFVETKKKVED 121 (233)
Q Consensus 93 -------------------------------~~~~----------~~-------~~~~---~~~~~k~iIf~~~~~~~~~ 121 (233)
++.. .. +.+. ...++++|||+++++.++.
T Consensus 331 l~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~ 410 (675)
T PHA02653 331 LEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEE 410 (675)
T ss_pred CcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHH
Confidence 0000 00 0111 1234689999999999999
Q ss_pred HHHHHhhC--CCeeEEEeCCCCHHHHHHHHHHh-hCCCCCEEEecccCcCCcCCCCccEEEEec---CCC
Q psy14082 122 ITRALRRE--RHSAICIHGDKTQQDRDYVLNDF-RQGKAPILVATDVAARGLDVEDVNTVNIGS---LQL 185 (233)
Q Consensus 122 l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d---~P~ 185 (233)
+++.|.+. ++.+..+||+|++. ++.+++| ++|+.+||||||+++||+|+|+|++||++| .|.
T Consensus 411 l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~ 478 (675)
T PHA02653 411 YKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE 478 (675)
T ss_pred HHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCC
Confidence 99999887 78999999999975 4667777 789999999999999999999999999999 554
No 60
>PRK01172 ski2-like helicase; Provisional
Probab=99.93 E-value=3.5e-25 Score=203.77 Aligned_cols=174 Identities=17% Similarity=0.192 Sum_probs=136.1
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh-hcCCcEEEEEcCC
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF-SSALRNICIFGGT 80 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~-~~~~~~~~~~gg~ 80 (233)
++.+..|++++++||||||||+++.+++++.+.. +.++++++|+++||.|+++.+.++ ..+.++...+|+.
T Consensus 31 i~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~ 102 (674)
T PRK01172 31 IEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDY 102 (674)
T ss_pred HHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCC
Confidence 4566789999999999999999999999988753 457999999999999999999987 4467888888876
Q ss_pred CC------CCeeEEe--------ccc------------------------------------------------------
Q psy14082 81 PK------GPQDCLP--------LHR------------------------------------------------------ 92 (233)
Q Consensus 81 ~~------~~~~lv~--------l~r------------------------------------------------------ 92 (233)
+. ..+++|+ +++
T Consensus 103 ~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~ 182 (674)
T PRK01172 103 DDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNA 182 (674)
T ss_pred CCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH
Confidence 53 2345555 000
Q ss_pred --hhhh------------------------------------chHHHh--cCCCCeEEEEecchhHHHHHHHHHhhCC--
Q psy14082 93 --FVFN------------------------------------CQYEMA--KNPAFKVIVFVETKKKVEDITRALRRER-- 130 (233)
Q Consensus 93 --~~~~------------------------------------~~~~~~--~~~~~k~iIf~~~~~~~~~l~~~L~~~~-- 130 (233)
+-.+ ....+. ...++++||||++++.++.++..|.+..
T Consensus 183 ~~la~wl~~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~ 262 (674)
T PRK01172 183 NELAQWLNASLIKSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPE 262 (674)
T ss_pred HHHHHHhCCCccCCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhh
Confidence 0000 000111 2356799999999999999999886531
Q ss_pred -----------------------CeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCC
Q psy14082 131 -----------------------HSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQ 184 (233)
Q Consensus 131 -----------------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P 184 (233)
..+.++||+|++++|..+.+.|++|..+|||||+.+++|+|+|+. .||++|.|
T Consensus 263 ~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~ 338 (674)
T PRK01172 263 FNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPAR-LVIVRDIT 338 (674)
T ss_pred cccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcce-EEEEcCce
Confidence 247789999999999999999999999999999999999999986 56666654
No 61
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.93 E-value=8.7e-25 Score=202.49 Aligned_cols=172 Identities=13% Similarity=0.105 Sum_probs=135.9
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh-h--cCCcEEEEEcCCC-
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF-S--SALRNICIFGGTP- 81 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~-~--~~~~~~~~~gg~~- 81 (233)
.+++|++++|+||||||.+|.+|+++... ...+++|++|||++|.|+++.+.+. . .+..+...+++.+
T Consensus 18 ~~~~~vvv~A~TGSGKTt~~pl~lL~~~~--------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~ 89 (812)
T PRK11664 18 KTAPQVLLKAPTGAGKSTWLPLQLLQHGG--------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESK 89 (812)
T ss_pred HhCCCEEEEcCCCCCHHHHHHHHHHHcCC--------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccc
Confidence 35789999999999999999999997542 2348999999999999999998654 2 2445666666543
Q ss_pred --CCCeeEEe--------------ccc-----------------------------------------------------
Q psy14082 82 --KGPQDCLP--------------LHR----------------------------------------------------- 92 (233)
Q Consensus 82 --~~~~~lv~--------------l~r----------------------------------------------------- 92 (233)
.+.+++|+ +.+
T Consensus 90 ~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~~l~~~~~ 169 (812)
T PRK11664 90 VGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQLLP 169 (812)
T ss_pred cCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHHHHHHhcC
Confidence 23455555 000
Q ss_pred -----------------hhh-------------hchHHHhcCCCCeEEEEecchhHHHHHHHHHhh---CCCeeEEEeCC
Q psy14082 93 -----------------FVF-------------NCQYEMAKNPAFKVIVFVETKKKVEDITRALRR---ERHSAICIHGD 139 (233)
Q Consensus 93 -----------------~~~-------------~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~---~~~~~~~~~~~ 139 (233)
++. .+. .......+++|||+++.+.++.+++.|.+ .++.+..+||+
T Consensus 170 ~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~-~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~ 248 (812)
T PRK11664 170 DAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATA-ELLRQESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGA 248 (812)
T ss_pred CCCEEEecCccccceEEeccCchhhhHHHHHHHHHH-HHHHhCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCC
Confidence 000 000 11223468899999999999999999987 57889999999
Q ss_pred CCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCC
Q psy14082 140 KTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLS 186 (233)
Q Consensus 140 ~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~ 186 (233)
|++++|..+++.|++|+.+|+||||++++|+|+|+|++||++++|..
T Consensus 249 l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~ 295 (812)
T PRK11664 249 LSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERV 295 (812)
T ss_pred CCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCccc
Confidence 99999999999999999999999999999999999999999888753
No 62
>PRK14701 reverse gyrase; Provisional
Probab=99.92 E-value=5e-25 Score=214.37 Aligned_cols=175 Identities=15% Similarity=0.125 Sum_probs=137.7
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhc----CCcEEEE
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSS----ALRNICI 76 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~----~~~~~~~ 76 (233)
+||.++.|+|++++||||||||++++++.+... .++.++|||+||+||+.|+++.++.+.. ++++..+
T Consensus 87 ~i~~il~G~d~li~APTGsGKTl~~~~~al~~~--------~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~ 158 (1638)
T PRK14701 87 WAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA--------LKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYY 158 (1638)
T ss_pred HHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH--------hcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEE
Confidence 468899999999999999999996666555432 2467899999999999999999999832 4567778
Q ss_pred EcCCCC-------------CCeeEEe----------------------------cc------chhh--------------
Q psy14082 77 FGGTPK-------------GPQDCLP----------------------------LH------RFVF-------------- 95 (233)
Q Consensus 77 ~gg~~~-------------~~~~lv~----------------------------l~------r~~~-------------- 95 (233)
+|+.+. +.+++|+ ++ |+++
T Consensus 159 ~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~ 238 (1638)
T PRK14701 159 HSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWK 238 (1638)
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHH
Confidence 888653 2456666 10 0000
Q ss_pred hc-------------------------hH---------------------------------------------------
Q psy14082 96 NC-------------------------QY--------------------------------------------------- 99 (233)
Q Consensus 96 ~~-------------------------~~--------------------------------------------------- 99 (233)
++ ..
T Consensus 239 il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~ 318 (1638)
T PRK14701 239 IIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSGRSALRNIVDVYLNPEKII 318 (1638)
T ss_pred hhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCCCCCCCCcEEEEEECCHHH
Confidence 00 00
Q ss_pred -----HHhcCCCCeEEEEecchhH---HHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEec----ccCc
Q psy14082 100 -----EMAKNPAFKVIVFVETKKK---VEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVAT----DVAA 167 (233)
Q Consensus 100 -----~~~~~~~~k~iIf~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T----~~~~ 167 (233)
.+....+.++||||++++. ++.+++.|.+.|+++..+||+ |...+++|++|+.+||||| ++++
T Consensus 319 k~~L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaa 393 (1638)
T PRK14701 319 KEHVRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLV 393 (1638)
T ss_pred HHHHHHHHHhCCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeE
Confidence 1112235689999999886 489999999999999999995 8899999999999999999 5899
Q ss_pred CCcCCCC-ccEEEEecCCC---Ccc
Q psy14082 168 RGLDVED-VNTVNIGSLQL---SAN 188 (233)
Q Consensus 168 ~Gldi~~-v~~VI~~d~P~---~~~ 188 (233)
||||+|+ |.+|||||+|. +.+
T Consensus 394 RGIDiP~~Vryvi~~~~Pk~~~~~e 418 (1638)
T PRK14701 394 RGLDLPERIRFAVFYGVPKFRFRVD 418 (1638)
T ss_pred ecCccCCccCEEEEeCCCCCCcchh
Confidence 9999999 99999999999 665
No 63
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.92 E-value=2.6e-24 Score=199.07 Aligned_cols=172 Identities=14% Similarity=0.123 Sum_probs=134.6
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh-hc--CCcEEEEEcCCC-
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF-SS--ALRNICIFGGTP- 81 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~-~~--~~~~~~~~gg~~- 81 (233)
..+++++++|+||||||.+|.+|+++... .+.+++|+.|||++|.|+++.+.+. .. +..+...+++.+
T Consensus 15 ~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~~ 86 (819)
T TIGR01970 15 AAHPQVVLEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGENK 86 (819)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccccc
Confidence 35789999999999999999999998762 2458999999999999999998654 22 234444444322
Q ss_pred --CCCeeEEe-------------------------cc-c-----------------------------------------
Q psy14082 82 --KGPQDCLP-------------------------LH-R----------------------------------------- 92 (233)
Q Consensus 82 --~~~~~lv~-------------------------l~-r----------------------------------------- 92 (233)
.+.+++++ .+ |
T Consensus 87 ~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~l~~~l~ 166 (819)
T TIGR01970 87 VSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGERLSSLLP 166 (819)
T ss_pred cCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHcC
Confidence 23455444 00 0
Q ss_pred -----------------hh-------------hhchHHHhcCCCCeEEEEecchhHHHHHHHHHhh---CCCeeEEEeCC
Q psy14082 93 -----------------FV-------------FNCQYEMAKNPAFKVIVFVETKKKVEDITRALRR---ERHSAICIHGD 139 (233)
Q Consensus 93 -----------------~~-------------~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~---~~~~~~~~~~~ 139 (233)
+. ..+... .....+++|||+++.+.++.+++.|.+ .++.+..+||+
T Consensus 167 ~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~-l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~ 245 (819)
T TIGR01970 167 DAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHA-LASETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGE 245 (819)
T ss_pred CCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHH-HHhcCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCC
Confidence 00 000001 123457899999999999999999987 47899999999
Q ss_pred CCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCC
Q psy14082 140 KTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLS 186 (233)
Q Consensus 140 ~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~ 186 (233)
|++++|..+++.|++|+.+|+||||++++|+|+|+|++||++|+|..
T Consensus 246 L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~ 292 (819)
T TIGR01970 246 LSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARV 292 (819)
T ss_pred CCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccc
Confidence 99999999999999999999999999999999999999999999864
No 64
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.92 E-value=2.1e-24 Score=195.65 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=84.7
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCC---------C
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVE---------D 174 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~---------~ 174 (233)
..+.++||||+|++.++.+...|.+.|+++..+||+++++++..+.++++.| .|+||||+++||+|++ +
T Consensus 422 ~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GG 499 (762)
T TIGR03714 422 ETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGG 499 (762)
T ss_pred hCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCC
Confidence 5678999999999999999999999999999999999999988887777666 7999999999999999 9
Q ss_pred ccEEEEecCCCCcc--cccc---------eeeEEeecchH
Q psy14082 175 VNTVNIGSLQLSAN--HNIS---------QVIEVVQDYEK 203 (233)
Q Consensus 175 v~~VI~~d~P~~~~--~~i~---------~~~~~~~~~~~ 203 (233)
+.+|++|++|++.. |++| .+..|++..++
T Consensus 500 L~vIit~~~ps~rid~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 500 LAVIGTERMENSRVDLQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred eEEEEecCCCCcHHHHHhhhcccCCCCceeEEEEEccchh
Confidence 99999999998754 5553 44567776553
No 65
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.92 E-value=2.4e-23 Score=187.94 Aligned_cols=87 Identities=17% Similarity=0.132 Sum_probs=80.7
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCC-------c
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVED-------V 175 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~-------v 175 (233)
...+.++||||+++..++.++..|.+.|+++..+|++ +.+|+..+.+|+.+...|+||||+++||+|++. .
T Consensus 402 ~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GG 479 (745)
T TIGR00963 402 HAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGG 479 (745)
T ss_pred HhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCC
Confidence 4578999999999999999999999999999999998 889999999999999999999999999999998 5
Q ss_pred cEEEEecCCCCccccc
Q psy14082 176 NTVNIGSLQLSANHNI 191 (233)
Q Consensus 176 ~~VI~~d~P~~~~~~i 191 (233)
.+||++++|.|...|.
T Consensus 480 l~VI~t~~p~s~ri~~ 495 (745)
T TIGR00963 480 LYVIGTERHESRRIDN 495 (745)
T ss_pred cEEEecCCCCcHHHHH
Confidence 5999999999987333
No 66
>PRK13766 Hef nuclease; Provisional
Probab=99.91 E-value=2.7e-23 Score=194.19 Aligned_cols=88 Identities=32% Similarity=0.470 Sum_probs=82.9
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCC--------CCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCc
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHSAICIHGD--------KTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDV 175 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v 175 (233)
..+.++||||+++++++.+.+.|...++.+..+||. |++.+|..++++|++|+.++||+|+++++|+|+|++
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~ 442 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSV 442 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccC
Confidence 466899999999999999999999999999999886 999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCccccc
Q psy14082 176 NTVNIGSLQLSANHNI 191 (233)
Q Consensus 176 ~~VI~~d~P~~~~~~i 191 (233)
++||+||+|++...|+
T Consensus 443 ~~VI~yd~~~s~~r~i 458 (773)
T PRK13766 443 DLVIFYEPVPSEIRSI 458 (773)
T ss_pred CEEEEeCCCCCHHHHH
Confidence 9999999999987555
No 67
>KOG0349|consensus
Probab=99.91 E-value=1.6e-24 Score=181.44 Aligned_cols=93 Identities=27% Similarity=0.501 Sum_probs=85.4
Q ss_pred HHhcCCCCeEEEEecchhHHHHHHHHHhhCC---CeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCcc
Q psy14082 100 EMAKNPAFKVIVFVETKKKVEDITRALRRER---HSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVN 176 (233)
Q Consensus 100 ~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~ 176 (233)
...+....++||||.|+..++.+...+.+.| ++|+++||+.-+++|.+.++.|+.++.+.|||||+++||+|+..+.
T Consensus 499 ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p 578 (725)
T KOG0349|consen 499 AIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLP 578 (725)
T ss_pred hhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCc
Confidence 3456677899999999999999999998765 6999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCcccccc
Q psy14082 177 TVNIGSLQLSANHNIS 192 (233)
Q Consensus 177 ~VI~~d~P~~~~~~i~ 192 (233)
.+||.-+|.+...|+|
T Consensus 579 ~~invtlpd~k~nyvh 594 (725)
T KOG0349|consen 579 FMINVTLPDDKTNYVH 594 (725)
T ss_pred eEEEEecCcccchhhh
Confidence 9999999998876663
No 68
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.90 E-value=5.2e-23 Score=175.97 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=72.1
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCC--CeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEec
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRER--HSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGS 182 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d 182 (233)
.+.++||||+|++.++.++..|++.+ +.+..+||.+++.+|.+. ++.++|||||+++||+|++.+ +|| ++
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~ 342 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS 342 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC
Confidence 45799999999999999999998864 578889999999998754 478999999999999999986 566 56
Q ss_pred CCCCcccccceeeEE
Q psy14082 183 LQLSANHNISQVIEV 197 (233)
Q Consensus 183 ~P~~~~~~i~~~~~~ 197 (233)
|.+.+.|+||+++.
T Consensus 343 -p~~~~~yiqR~GR~ 356 (357)
T TIGR03158 343 -ARDAAAFWQRLGRL 356 (357)
T ss_pred -CCCHHHHhhhcccC
Confidence 88898888877653
No 69
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=2.3e-22 Score=182.35 Aligned_cols=91 Identities=20% Similarity=0.297 Sum_probs=78.7
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCC-CCCEEEecccCcCCcCCCCccEEEEecC
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQG-KAPILVATDVAARGLDVEDVNTVNIGSL 183 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~iLv~T~~~~~Gldi~~v~~VI~~d~ 183 (233)
.+.++||||++...++.++..| .+.++||++++.+|..++++|+.| .+++||+|+++++|+|+|++++||+++.
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~ 569 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISS 569 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCC
Confidence 6789999999999999998887 356799999999999999999875 7899999999999999999999999999
Q ss_pred CC-CcccccceeeEEeec
Q psy14082 184 QL-SANHNISQVIEVVQD 200 (233)
Q Consensus 184 P~-~~~~~i~~~~~~~~~ 200 (233)
|. |..+|++|.++..+.
T Consensus 570 ~~gS~~q~iQRlGRilR~ 587 (732)
T TIGR00603 570 HYGSRRQEAQRLGRILRA 587 (732)
T ss_pred CCCCHHHHHHHhcccccC
Confidence 84 787777554444443
No 70
>KOG0329|consensus
Probab=99.89 E-value=3.4e-23 Score=162.99 Aligned_cols=207 Identities=23% Similarity=0.304 Sum_probs=138.6
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh---hcCCcEEEEE
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF---SSALRNICIF 77 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~---~~~~~~~~~~ 77 (233)
.||...-|-|++++|.+|.|||+.|+++-++.+... .+...+|++|+|||||.|+.+.+.+| .++++++.++
T Consensus 72 cipqailgmdvlcqaksgmgktavfvl~tlqqiepv-----~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFf 146 (387)
T KOG0329|consen 72 CIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV-----DGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFF 146 (387)
T ss_pred hhhHHhhcchhheecccCCCceeeeehhhhhhcCCC-----CCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEE
Confidence 489999999999999999999999999999988654 55788999999999999999999988 5789999999
Q ss_pred cCCCC---------CCeeEEe-------ccc------------hhhhchH-------------HHhc-CCCCeEEEEecc
Q psy14082 78 GGTPK---------GPQDCLP-------LHR------------FVFNCQY-------------EMAK-NPAFKVIVFVET 115 (233)
Q Consensus 78 gg~~~---------~~~~lv~-------l~r------------~~~~~~~-------------~~~~-~~~~k~iIf~~~ 115 (233)
||.++ .+.++|| |-| +++.|.+ .+.. -..++++.|..|
T Consensus 147 GG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsat 226 (387)
T KOG0329|consen 147 GGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 226 (387)
T ss_pred cceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeee
Confidence 99876 3456777 111 3444443 2222 245677777766
Q ss_pred h-hHHHHHHHHHhhCCCee-------EEEeCC------CCHHHHHHH----HHH--hhC------------CCCCEEEec
Q psy14082 116 K-KKVEDITRALRRERHSA-------ICIHGD------KTQQDRDYV----LND--FRQ------------GKAPILVAT 163 (233)
Q Consensus 116 ~-~~~~~l~~~L~~~~~~~-------~~~~~~------~~~~~r~~~----~~~--f~~------------g~~~iLv~T 163 (233)
- +...-+...+.+....+ ..+||- +...++... ++. |+. -+.+ +|+|
T Consensus 227 lskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~Rl~f~kr-~vat 305 (387)
T KOG0329|consen 227 LSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQRLSFQKR-LVAT 305 (387)
T ss_pred cchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhhhhhhhh-hHHh
Confidence 3 33444444443321111 123331 111111111 110 000 0234 8999
Q ss_pred ccCcCCcCCCCccEEEEecCCCCccccc------------ceeeEEeecchHHHHHHHHHHh
Q psy14082 164 DVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVIEVVQDYEKEKRLFSLIRE 213 (233)
Q Consensus 164 ~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~~~~~~~~~~~~~~~~i~~ 213 (233)
++.+||+|+..++.++|||+|.+.+.|. |-++.|++..++..-+...-++
T Consensus 306 ~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdR 367 (387)
T KOG0329|consen 306 DLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDR 367 (387)
T ss_pred hhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHh
Confidence 9999999999999999999999999777 4566677764444333333333
No 71
>KOG0354|consensus
Probab=99.88 E-value=6.4e-22 Score=177.04 Aligned_cols=101 Identities=29% Similarity=0.413 Sum_probs=85.4
Q ss_pred HHhcCCCCeEEEEecchhHHHHHHHHHhh---CCCeeEEEeC--------CCCHHHHHHHHHHhhCCCCCEEEecccCcC
Q psy14082 100 EMAKNPAFKVIVFVETKKKVEDITRALRR---ERHSAICIHG--------DKTQQDRDYVLNDFRQGKAPILVATDVAAR 168 (233)
Q Consensus 100 ~~~~~~~~k~iIf~~~~~~~~~l~~~L~~---~~~~~~~~~~--------~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~ 168 (233)
.+...+..++||||++|+.++.+...|.+ .++++..+-| +|+++++.+++++|++|++++||||+++++
T Consensus 407 ~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EE 486 (746)
T KOG0354|consen 407 QFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEE 486 (746)
T ss_pred HhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhc
Confidence 44567889999999999999999999973 3455555544 699999999999999999999999999999
Q ss_pred CcCCCCccEEEEecCCCCccccc----------ceeeEEeec
Q psy14082 169 GLDVEDVNTVNIGSLQLSANHNI----------SQVIEVVQD 200 (233)
Q Consensus 169 Gldi~~v~~VI~~d~P~~~~~~i----------~~~~~~~~~ 200 (233)
|+|++++++||.||.-+|+...| |+++.+.+.
T Consensus 487 GLDI~ec~lVIcYd~~snpIrmIQrrGRgRa~ns~~vll~t~ 528 (746)
T KOG0354|consen 487 GLDIGECNLVICYDYSSNPIRMVQRRGRGRARNSKCVLLTTG 528 (746)
T ss_pred cCCcccccEEEEecCCccHHHHHHHhccccccCCeEEEEEcc
Confidence 99999999999999999986444 456666653
No 72
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.86 E-value=9.6e-21 Score=174.06 Aligned_cols=170 Identities=17% Similarity=0.135 Sum_probs=138.3
Q ss_pred CCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh-hcCCcEEEEEcCCCC
Q psy14082 4 PSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF-SSALRNICIFGGTPK 82 (233)
Q Consensus 4 ~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~-~~~~~~~~~~gg~~~ 82 (233)
.+..|.|+++++|||||||+...+.+++.+.+. +.+++++||+|+||.|.++.+.++ .-++++...+|+.+.
T Consensus 43 ~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~ 115 (766)
T COG1204 43 GLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDL 115 (766)
T ss_pred cccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCccc
Confidence 345689999999999999999999999999753 568999999999999999999976 568999999999883
Q ss_pred ------CCeeEEe--------ccc--------------------------------------------------------
Q psy14082 83 ------GPQDCLP--------LHR-------------------------------------------------------- 92 (233)
Q Consensus 83 ------~~~~lv~--------l~r-------------------------------------------------------- 92 (233)
+.+++|+ +++
T Consensus 116 ~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~e 195 (766)
T COG1204 116 DDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAEE 195 (766)
T ss_pred chhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCCHHH
Confidence 4556776 000
Q ss_pred -----------------------------------h-------hhhchH--HHhcCCCCeEEEEecchhHHHHHHHHHhh
Q psy14082 93 -----------------------------------F-------VFNCQY--EMAKNPAFKVIVFVETKKKVEDITRALRR 128 (233)
Q Consensus 93 -----------------------------------~-------~~~~~~--~~~~~~~~k~iIf~~~~~~~~~l~~~L~~ 128 (233)
. -..+.+ ......+++++|||++++.+...++.+.+
T Consensus 196 vA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~ 275 (766)
T COG1204 196 VADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRI 275 (766)
T ss_pred HHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHH
Confidence 0 000000 22445788999999999999999999983
Q ss_pred C---------------------C----------------CeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcC
Q psy14082 129 E---------------------R----------------HSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLD 171 (233)
Q Consensus 129 ~---------------------~----------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gld 171 (233)
. + ..+.++|++++.++|..+.+.|+.|.++||+||+.++.|+|
T Consensus 276 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVN 355 (766)
T COG1204 276 KMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVN 355 (766)
T ss_pred HHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcC
Confidence 0 0 14578899999999999999999999999999999999999
Q ss_pred CCCccEEEE
Q psy14082 172 VEDVNTVNI 180 (233)
Q Consensus 172 i~~v~~VI~ 180 (233)
+|.-..||-
T Consensus 356 LPA~~VIIk 364 (766)
T COG1204 356 LPARTVIIK 364 (766)
T ss_pred CcceEEEEe
Confidence 998776663
No 73
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.86 E-value=1.4e-21 Score=181.77 Aligned_cols=183 Identities=20% Similarity=0.252 Sum_probs=149.1
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh---hc-CCcEEEEEcCC
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF---SS-ALRNICIFGGT 80 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~---~~-~~~~~~~~gg~ 80 (233)
+.+|+|+++.++||||||.+|++|+++++++.+ ..++|+|-||++||+...+.++++ .+ ++.+....|+.
T Consensus 82 ~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~------~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt 155 (851)
T COG1205 82 IREGRNVVVTTGTGSGKTESFLLPILDHLLRDP------SARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDT 155 (851)
T ss_pred HHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc------CccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCC
Confidence 467999999999999999999999999999853 448999999999999999999999 22 57888889987
Q ss_pred CC---------CCeeEEe---------------------------------------------ccchhhhchH-------
Q psy14082 81 PK---------GPQDCLP---------------------------------------------LHRFVFNCQY------- 99 (233)
Q Consensus 81 ~~---------~~~~lv~---------------------------------------------l~r~~~~~~~------- 99 (233)
+. .++|++. ++|+.+.++.
T Consensus 156 ~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~ 235 (851)
T COG1205 156 PPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQI 235 (851)
T ss_pred ChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceE
Confidence 65 3444555 2332222210
Q ss_pred ----------------------------------------------------------------HHhcCCCCeEEEEecc
Q psy14082 100 ----------------------------------------------------------------EMAKNPAFKVIVFVET 115 (233)
Q Consensus 100 ----------------------------------------------------------------~~~~~~~~k~iIf~~~ 115 (233)
...-..+-++|+|+.+
T Consensus 236 i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~s 315 (851)
T COG1205 236 ICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRS 315 (851)
T ss_pred EEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEeh
Confidence 1123377899999999
Q ss_pred hhHHHHHH----HHHhhCC----CeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCC-C
Q psy14082 116 KKKVEDIT----RALRRER----HSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQL-S 186 (233)
Q Consensus 116 ~~~~~~l~----~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~-~ 186 (233)
++.++.+. ..+...+ ..+..++++|...+|..+...|+.|+..++++|+.+.-|+|+.+++.||.++.|. +
T Consensus 316 r~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s 395 (851)
T COG1205 316 RKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVS 395 (851)
T ss_pred hhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCch
Confidence 99999997 4444445 5678899999999999999999999999999999999999999999999999999 7
Q ss_pred cccccce
Q psy14082 187 ANHNISQ 193 (233)
Q Consensus 187 ~~~~i~~ 193 (233)
...++++
T Consensus 396 ~~~~~Q~ 402 (851)
T COG1205 396 VLSFRQR 402 (851)
T ss_pred HHHHHHh
Confidence 6655533
No 74
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.85 E-value=3.9e-21 Score=166.00 Aligned_cols=167 Identities=20% Similarity=0.145 Sum_probs=139.6
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhc--CCcEEEEEcC---
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSS--ALRNICIFGG--- 79 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~--~~~~~~~~gg--- 79 (233)
++.|.|.++.++|+||||+.--++-+.+++. .|.+-|+|||..+||+|-|+.|+.-+. ++++++-+|-
T Consensus 229 LLeG~nllVVSaTasGKTLIgElAGi~~~l~-------~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srI 301 (830)
T COG1202 229 LLEGENLLVVSATASGKTLIGELAGIPRLLS-------GGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRI 301 (830)
T ss_pred cccCCceEEEeccCCCcchHHHhhCcHHHHh-------CCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhh
Confidence 5789999999999999999999999988874 477899999999999999999998743 5566666654
Q ss_pred ----------CCCCCeeEEe-----------------------------------------ccc----------------
Q psy14082 80 ----------TPKGPQDCLP-----------------------------------------LHR---------------- 92 (233)
Q Consensus 80 ----------~~~~~~~lv~-----------------------------------------l~r---------------- 92 (233)
.+.+.+|+|| +.|
T Consensus 302 k~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSAT 381 (830)
T COG1202 302 KTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSAT 381 (830)
T ss_pred cccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEee
Confidence 3335667888 111
Q ss_pred -----------------------------------------hhhhchH----HHhcCCCCeEEEEecchhHHHHHHHHHh
Q psy14082 93 -----------------------------------------FVFNCQY----EMAKNPAFKVIVFVETKKKVEDITRALR 127 (233)
Q Consensus 93 -----------------------------------------~~~~~~~----~~~~~~~~k~iIf~~~~~~~~~l~~~L~ 127 (233)
+..+++. .......+++|||+++++.|+.++..|.
T Consensus 382 VgNp~elA~~l~a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~ 461 (830)
T COG1202 382 VGNPEELAKKLGAKLVLYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALT 461 (830)
T ss_pred cCChHHHHHHhCCeeEeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhh
Confidence 2222222 2345567899999999999999999999
Q ss_pred hCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEE
Q psy14082 128 RERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTV 178 (233)
Q Consensus 128 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~V 178 (233)
..|+++..+|++++..+|..+...|.+++..++|+|-+++-|+|+|.-.+|
T Consensus 462 ~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVI 512 (830)
T COG1202 462 GKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVI 512 (830)
T ss_pred cCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHH
Confidence 999999999999999999999999999999999999999999999987755
No 75
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.84 E-value=7.1e-20 Score=160.52 Aligned_cols=95 Identities=20% Similarity=0.306 Sum_probs=88.9
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCC
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQ 184 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P 184 (233)
.+.+++||+.+..+++.++..+...+. +..+++..+..+|..++++|+.|++++||++.++.+|+|+|+++++|...++
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t 360 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPT 360 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCC
Confidence 578999999999999999999988887 8899999999999999999999999999999999999999999999999999
Q ss_pred CCcccccceeeEEeec
Q psy14082 185 LSANHNISQVIEVVQD 200 (233)
Q Consensus 185 ~~~~~~i~~~~~~~~~ 200 (233)
.|...|+++.++..+.
T Consensus 361 ~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 361 GSRRLFIQRLGRGLRP 376 (442)
T ss_pred CcHHHHHHHhhhhccC
Confidence 9999888777777764
No 76
>KOG0351|consensus
Probab=99.84 E-value=2.7e-21 Score=179.40 Aligned_cols=196 Identities=19% Similarity=0.184 Sum_probs=151.5
Q ss_pred CCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh-hcCCcEEEEEcCCCC
Q psy14082 4 PSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF-SSALRNICIFGGTPK 82 (233)
Q Consensus 4 ~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~-~~~~~~~~~~gg~~~ 82 (233)
.++.|+|+++.+|||.||++||.+|++- .+...|+|.|...|.+. +..++ ..++....+.++...
T Consensus 275 ~~l~Gkd~fvlmpTG~GKSLCYQlPA~l-----------~~gitvVISPL~SLm~D---Qv~~L~~~~I~a~~L~s~q~~ 340 (941)
T KOG0351|consen 275 ATLSGKDCFVLMPTGGGKSLCYQLPALL-----------LGGVTVVISPLISLMQD---QVTHLSKKGIPACFLSSIQTA 340 (941)
T ss_pred HHHcCCceEEEeecCCceeeEeeccccc-----------cCCceEEeccHHHHHHH---HHHhhhhcCcceeeccccccH
Confidence 4688999999999999999999999873 24488999997777655 44444 447888888877544
Q ss_pred CC-------------ee---EEe--------------------------------------------------ccc----
Q psy14082 83 GP-------------QD---CLP--------------------------------------------------LHR---- 92 (233)
Q Consensus 83 ~~-------------~~---lv~--------------------------------------------------l~r---- 92 (233)
.. .+ .|. +++
T Consensus 341 ~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~ 420 (941)
T KOG0351|consen 341 AERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPG 420 (941)
T ss_pred HHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCC
Confidence 11 11 111 000
Q ss_pred ---------------------------------------------------hhhhchHHHhcCCCCeEEEEecchhHHHH
Q psy14082 93 ---------------------------------------------------FVFNCQYEMAKNPAFKVIVFVETKKKVED 121 (233)
Q Consensus 93 ---------------------------------------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~ 121 (233)
........-...+....||||.++..++.
T Consensus 421 vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~ 500 (941)
T KOG0351|consen 421 VPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQ 500 (941)
T ss_pred CCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHH
Confidence 11111112345577889999999999999
Q ss_pred HHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc---c------
Q psy14082 122 ITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI---S------ 192 (233)
Q Consensus 122 l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i---~------ 192 (233)
++..|++.|+++..+|+||+..+|..+-++|..++++|+|||=+++.|+|.|+|..||||.+|.|.+.|. |
T Consensus 501 vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG 580 (941)
T KOG0351|consen 501 VSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDG 580 (941)
T ss_pred HHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887 3
Q ss_pred ---eeeEEeecchHHHHHHHHHHhh
Q psy14082 193 ---QVIEVVQDYEKEKRLFSLIREL 214 (233)
Q Consensus 193 ---~~~~~~~~~~~~~~~~~~i~~~ 214 (233)
.++.|++. .+..++..++..-
T Consensus 581 ~~s~C~l~y~~-~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 581 LPSSCVLLYGY-ADISELRRLLTSG 604 (941)
T ss_pred CcceeEEecch-hHHHHHHHHHHcc
Confidence 44445554 3555555555553
No 77
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.84 E-value=1.3e-19 Score=166.10 Aligned_cols=170 Identities=19% Similarity=0.218 Sum_probs=129.9
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCC-----
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPK----- 82 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~----- 82 (233)
+++.++.++||||||.+|+.++.+.+. .+.++|||+||++|+.|+++.+++.+ +.++..++|+.+.
T Consensus 162 ~~~~Ll~~~TGSGKT~v~l~~i~~~l~--------~g~~vLvLvPt~~L~~Q~~~~l~~~f-g~~v~~~~s~~s~~~r~~ 232 (679)
T PRK05580 162 FSPFLLDGVTGSGKTEVYLQAIAEVLA--------QGKQALVLVPEIALTPQMLARFRARF-GAPVAVLHSGLSDGERLD 232 (679)
T ss_pred CCcEEEECCCCChHHHHHHHHHHHHHH--------cCCeEEEEeCcHHHHHHHHHHHHHHh-CCCEEEEECCCCHHHHHH
Confidence 478999999999999999988777663 36689999999999999999999864 5688888888653
Q ss_pred --------CCeeEEe--------ccc------------------------------------------------------
Q psy14082 83 --------GPQDCLP--------LHR------------------------------------------------------ 92 (233)
Q Consensus 83 --------~~~~lv~--------l~r------------------------------------------------------ 92 (233)
+.+++|| +++
T Consensus 233 ~~~~~~~g~~~IVVgTrsal~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~~~il~SATps~~s~~~~ 312 (679)
T PRK05580 233 EWRKAKRGEAKVVIGARSALFLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENIPVVLGSATPSLESLANA 312 (679)
T ss_pred HHHHHHcCCCCEEEeccHHhcccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccCCCEEEEcCCCCHHHHHHH
Confidence 3456776 000
Q ss_pred -----------------------hhhhch-----------H----HH--hcCCCCeEEEEecch----------------
Q psy14082 93 -----------------------FVFNCQ-----------Y----EM--AKNPAFKVIVFVETK---------------- 116 (233)
Q Consensus 93 -----------------------~~~~~~-----------~----~~--~~~~~~k~iIf~~~~---------------- 116 (233)
++++-. . .+ ....+.++|+|+|++
T Consensus 313 ~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~ 392 (679)
T PRK05580 313 QQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAE 392 (679)
T ss_pred hccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccC
Confidence 111100 0 00 112456899998863
Q ss_pred --------------------------------------------hHHHHHHHHHhhC--CCeeEEEeCCCC--HHHHHHH
Q psy14082 117 --------------------------------------------KKVEDITRALRRE--RHSAICIHGDKT--QQDRDYV 148 (233)
Q Consensus 117 --------------------------------------------~~~~~l~~~L~~~--~~~~~~~~~~~~--~~~r~~~ 148 (233)
..++.+++.|++. +.++..+|++++ +++++++
T Consensus 393 C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~ 472 (679)
T PRK05580 393 CPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQL 472 (679)
T ss_pred CCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHH
Confidence 2457788888776 778999999986 4678999
Q ss_pred HHHhhCCCCCEEEecccCcCCcCCCCccEEEEe--cCCCC
Q psy14082 149 LNDFRQGKAPILVATDVAARGLDVEDVNTVNIG--SLQLS 186 (233)
Q Consensus 149 ~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~--d~P~~ 186 (233)
+++|++|+.+|||+|+++++|+|+|+|++|+.+ |.+.+
T Consensus 473 l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~ 512 (679)
T PRK05580 473 LAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLF 512 (679)
T ss_pred HHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhcc
Confidence 999999999999999999999999999999655 54443
No 78
>KOG0352|consensus
Probab=99.83 E-value=1.3e-20 Score=157.86 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=82.2
Q ss_pred CeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCC
Q psy14082 107 FKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLS 186 (233)
Q Consensus 107 ~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~ 186 (233)
+-.||||.|++.++.++-.|...|+.+..+|.|+-..+|.++-++|-+++..|+++|..++.|+|-|+|..|||||+|.|
T Consensus 256 GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn 335 (641)
T KOG0352|consen 256 GCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQN 335 (641)
T ss_pred cceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhh
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q psy14082 187 ANHNI 191 (233)
Q Consensus 187 ~~~~i 191 (233)
...|-
T Consensus 336 ~AgYY 340 (641)
T KOG0352|consen 336 LAGYY 340 (641)
T ss_pred hHHHH
Confidence 98777
No 79
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=3e-19 Score=163.77 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=66.4
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCC
Q psy14082 102 AKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVE 173 (233)
Q Consensus 102 ~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~ 173 (233)
....+.++||||+|++.++.++..|.+.|+++..+|+.+.++++..+.++|+.| .|+||||+++||+|+.
T Consensus 440 ~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~ 509 (896)
T PRK13104 440 CGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIV 509 (896)
T ss_pred HHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCccee
Confidence 456889999999999999999999999999999999999999999999999999 4999999999999985
No 80
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.82 E-value=6e-19 Score=164.98 Aligned_cols=87 Identities=18% Similarity=0.262 Sum_probs=80.8
Q ss_pred CCCCeEEEEecchhHHHHHHHHH-hhCCCeeEEEeCCCCHHHHHHHHHHhhCC--CCCEEEecccCcCCcCCCCccEEEE
Q psy14082 104 NPAFKVIVFVETKKKVEDITRAL-RRERHSAICIHGDKTQQDRDYVLNDFRQG--KAPILVATDVAARGLDVEDVNTVNI 180 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~iLv~T~~~~~Gldi~~v~~VI~ 180 (233)
....|+||||+++..+..+.+.| ...|+++..+||+|++.+|.++++.|+++ ..+|||||+++++|+|++.+++|||
T Consensus 491 ~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VIn 570 (956)
T PRK04914 491 HRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVL 570 (956)
T ss_pred cCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEE
Confidence 45789999999999999999999 46799999999999999999999999984 5999999999999999999999999
Q ss_pred ecCCCCcccc
Q psy14082 181 GSLQLSANHN 190 (233)
Q Consensus 181 ~d~P~~~~~~ 190 (233)
||+|+++..|
T Consensus 571 fDlP~nP~~~ 580 (956)
T PRK04914 571 FDLPFNPDLL 580 (956)
T ss_pred ecCCCCHHHH
Confidence 9999999733
No 81
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=1.3e-18 Score=154.51 Aligned_cols=65 Identities=28% Similarity=0.399 Sum_probs=57.3
Q ss_pred HHHHHHHHhhC--CCeeEEEeCCCCHHHH--HHHHHHhhCCCCCEEEecccCcCCcCCCCccEEE--EecC
Q psy14082 119 VEDITRALRRE--RHSAICIHGDKTQQDR--DYVLNDFRQGKAPILVATDVAARGLDVEDVNTVN--IGSL 183 (233)
Q Consensus 119 ~~~l~~~L~~~--~~~~~~~~~~~~~~~r--~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI--~~d~ 183 (233)
++.+.+.|++. +.++..+|++++...+ .+++++|++|+.+|||+|+++++|+|+|+|++|+ ++|.
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~ 341 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADS 341 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcc
Confidence 58888888876 6789999999987766 8999999999999999999999999999999985 5554
No 82
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.81 E-value=6.9e-19 Score=155.79 Aligned_cols=162 Identities=20% Similarity=0.217 Sum_probs=132.3
Q ss_pred eEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh--cCCcEEEEEcCCCC-------
Q psy14082 12 FSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS--SALRNICIFGGTPK------- 82 (233)
Q Consensus 12 i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~--~~~~~~~~~gg~~~------- 82 (233)
++|+--|||||++.+++++..+ ..|.++..++||--||.|.++.+.+++ .++++..++|....
T Consensus 287 LlQGDVGSGKTvVA~laml~ai--------~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l 358 (677)
T COG1200 287 LLQGDVGSGKTVVALLAMLAAI--------EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEIL 358 (677)
T ss_pred HhccCcCCCHHHHHHHHHHHHH--------HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHH
Confidence 5688899999999999999888 458899999999999999999999993 37899999998654
Q ss_pred ------CCeeEEe--------------------------------------------------ccc--------------
Q psy14082 83 ------GPQDCLP--------------------------------------------------LHR-------------- 92 (233)
Q Consensus 83 ------~~~~lv~--------------------------------------------------l~r-------------- 92 (233)
+.+++|| +.|
T Consensus 359 ~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIiDEQHRFGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~ 438 (677)
T COG1200 359 EQLASGEIDIVVGTHALIQDKVEFHNLGLVIIDEQHRFGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSI 438 (677)
T ss_pred HHHhCCCCCEEEEcchhhhcceeecceeEEEEeccccccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchh
Confidence 3344777 111
Q ss_pred -----------------------hhhhchHHHhcCCCCeEEEEecchhHH--------HHHHHHHhhC--CCeeEEEeCC
Q psy14082 93 -----------------------FVFNCQYEMAKNPAFKVIVFVETKKKV--------EDITRALRRE--RHSAICIHGD 139 (233)
Q Consensus 93 -----------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~--------~~l~~~L~~~--~~~~~~~~~~ 139 (233)
++..+.+.+ .+++++.+.|+-.+.. +.+++.|+.. +.++..+||.
T Consensus 439 IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei--~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGr 516 (677)
T COG1200 439 IDELPPGRKPITTVVIPHERRPEVYERIREEI--AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGR 516 (677)
T ss_pred hccCCCCCCceEEEEeccccHHHHHHHHHHHH--HcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecC
Confidence 233332233 3889999999877544 4666666643 4679999999
Q ss_pred CCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecC
Q psy14082 140 KTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSL 183 (233)
Q Consensus 140 ~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~ 183 (233)
|+.+++++++++|++|+.+|||||.+.+-|+|+|+.+++|++|.
T Consensus 517 m~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~A 560 (677)
T COG1200 517 MKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENA 560 (677)
T ss_pred CChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEech
Confidence 99999999999999999999999999999999999999998884
No 83
>KOG0353|consensus
Probab=99.79 E-value=1.1e-19 Score=150.56 Aligned_cols=178 Identities=20% Similarity=0.221 Sum_probs=141.4
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGT 80 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~ 80 (233)
||...++|.|+++..|||.||++||.+|.+. ...-+|++||...|.....-+++.+ ++....+...+
T Consensus 102 ain~~ma~ed~~lil~tgggkslcyqlpal~-----------adg~alvi~plislmedqil~lkql--gi~as~lnans 168 (695)
T KOG0353|consen 102 AINATMAGEDAFLILPTGGGKSLCYQLPALC-----------ADGFALVICPLISLMEDQILQLKQL--GIDASMLNANS 168 (695)
T ss_pred HhhhhhccCceEEEEeCCCccchhhhhhHHh-----------cCCceEeechhHHHHHHHHHHHHHh--CcchhhccCcc
Confidence 4667789999999999999999999999985 2446899999988888777777776 55555555443
Q ss_pred CC-------------CCee---EEe--------------------------------------------------ccc--
Q psy14082 81 PK-------------GPQD---CLP--------------------------------------------------LHR-- 92 (233)
Q Consensus 81 ~~-------------~~~~---lv~--------------------------------------------------l~r-- 92 (233)
++ +... .|. |+|
T Consensus 169 ske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf 248 (695)
T KOG0353|consen 169 SKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQF 248 (695)
T ss_pred cHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhC
Confidence 33 1111 111 111
Q ss_pred ------------------------------------------------------hhhhchHHH-hcCCCCeEEEEecchh
Q psy14082 93 ------------------------------------------------------FVFNCQYEM-AKNPAFKVIVFVETKK 117 (233)
Q Consensus 93 ------------------------------------------------------~~~~~~~~~-~~~~~~k~iIf~~~~~ 117 (233)
.+.-+.+.. ....+...||||-+++
T Consensus 249 ~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~ 328 (695)
T KOG0353|consen 249 KGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQK 328 (695)
T ss_pred CCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccc
Confidence 111111122 2335566799999999
Q ss_pred HHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc
Q psy14082 118 KVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI 191 (233)
Q Consensus 118 ~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i 191 (233)
.++.++..|+.+|+.+..+|..|.+.+|..+-+.|..|+++++|+|-.++.|+|-|+|..|||-.+|.|.+.|-
T Consensus 329 d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyy 402 (695)
T KOG0353|consen 329 DCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYY 402 (695)
T ss_pred cHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998776
No 84
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=5.8e-18 Score=155.06 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=65.3
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVED 174 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~ 174 (233)
..+.++||||+|+..++.++..|.+.|+++..+|+. +.+|+..+.+|+.+...|+||||+++||+|++-
T Consensus 428 ~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~L 496 (830)
T PRK12904 428 KKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKL 496 (830)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccC
Confidence 577899999999999999999999999999999996 789999999999999999999999999999864
No 85
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.77 E-value=2.9e-17 Score=134.52 Aligned_cols=161 Identities=15% Similarity=0.237 Sum_probs=132.7
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCC--CC
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPK--GP 84 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~--~~ 84 (233)
...|.++.|-||+|||.+ +.+.++..+. .|.++.|-+|..+.|..++.++++-+.+..+.+++|+++. +.
T Consensus 115 ~k~~~lv~AV~GaGKTEM-if~~i~~al~-------~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~fr~ 186 (441)
T COG4098 115 QKEDTLVWAVTGAGKTEM-IFQGIEQALN-------QGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSYFRA 186 (441)
T ss_pred hcCcEEEEEecCCCchhh-hHHHHHHHHh-------cCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchhccc
Confidence 467899999999999988 7777777764 4889999999999999999999999999999999999875 45
Q ss_pred eeEEe----ccc--------------------------------------------------------------------
Q psy14082 85 QDCLP----LHR-------------------------------------------------------------------- 92 (233)
Q Consensus 85 ~~lv~----l~r-------------------------------------------------------------------- 92 (233)
+++|+ |-|
T Consensus 187 plvVaTtHQLlrFk~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH 266 (441)
T COG4098 187 PLVVATTHQLLRFKQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPTKKLERKILKGNLRILKLPARFH 266 (441)
T ss_pred cEEEEehHHHHHHHhhccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCChHHHHHHhhhCCeeEeecchhhc
Confidence 66676 000
Q ss_pred ---------------------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhC-C-CeeEEEeCCCCHH
Q psy14082 93 ---------------------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRE-R-HSAICIHGDKTQQ 143 (233)
Q Consensus 93 ---------------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~-~-~~~~~~~~~~~~~ 143 (233)
++.+++ .....+.+++||+++....+.++..|++. . ..+..+|+. ..
T Consensus 267 ~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~le--kq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~ 342 (441)
T COG4098 267 GKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLE--KQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQ 342 (441)
T ss_pred CCCCCCCceEEeccHHHHhhhccCCHHHHHHHH--HHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--Cc
Confidence 111111 13446789999999999999999999544 3 455788886 56
Q ss_pred HHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEE
Q psy14082 144 DRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVN 179 (233)
Q Consensus 144 ~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI 179 (233)
.|.+.+++|++|+..+|++|.+++||+.+|+||+.+
T Consensus 343 ~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~V 378 (441)
T COG4098 343 HRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFV 378 (441)
T ss_pred cHHHHHHHHHcCceEEEEEeehhhcccccccceEEE
Confidence 789999999999999999999999999999999876
No 86
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=5.6e-17 Score=148.04 Aligned_cols=87 Identities=17% Similarity=0.232 Sum_probs=78.4
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCC---Ccc---
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVE---DVN--- 176 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~---~v~--- 176 (233)
...+.++||||+|+..++.++..|.+.|+++..+|+++..+++..+.++++.|. |+|||++++||.|++ +|.
T Consensus 437 ~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~G 514 (796)
T PRK12906 437 HAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELG 514 (796)
T ss_pred HhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhC
Confidence 457899999999999999999999999999999999999888888888777775 999999999999994 899
Q ss_pred --EEEEecCCCCccccc
Q psy14082 177 --TVNIGSLQLSANHNI 191 (233)
Q Consensus 177 --~VI~~d~P~~~~~~i 191 (233)
+||++++|.|..-|.
T Consensus 515 GLhVI~te~pes~ri~~ 531 (796)
T PRK12906 515 GLAVIGTERHESRRIDN 531 (796)
T ss_pred CcEEEeeecCCcHHHHH
Confidence 999999999987443
No 87
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.75 E-value=1.9e-16 Score=136.24 Aligned_cols=109 Identities=27% Similarity=0.320 Sum_probs=91.5
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEec
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGS 182 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d 182 (233)
...+.+++|-+-|++.++.+.++|.+.|+++..+|++...-+|.+++++++.|+++|||.-+.+-+|+|+|.|.+|-.+|
T Consensus 443 ~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlD 522 (663)
T COG0556 443 VAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILD 522 (663)
T ss_pred HhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEee
Confidence 44668999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-----CCCcc---ccc--------ceeeEEeecchHHHHHHHHHHh
Q psy14082 183 L-----QLSAN---HNI--------SQVIEVVQDYEKEKRLFSLIRE 213 (233)
Q Consensus 183 ~-----P~~~~---~~i--------~~~~~~~~~~~~~~~~~~~i~~ 213 (233)
- ..|.. +-| |+++..... -...+-+.|++
T Consensus 523 ADKeGFLRse~SLIQtIGRAARN~~GkvIlYAD~--iT~sM~~Ai~E 567 (663)
T COG0556 523 ADKEGFLRSERSLIQTIGRAARNVNGKVILYADK--ITDSMQKAIDE 567 (663)
T ss_pred cCccccccccchHHHHHHHHhhccCCeEEEEchh--hhHHHHHHHHH
Confidence 4 33433 333 566666653 33555555544
No 88
>KOG0952|consensus
Probab=99.75 E-value=3.7e-17 Score=149.35 Aligned_cols=178 Identities=18% Similarity=0.147 Sum_probs=137.2
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccC--CCCCCCCceEEEEcCcHHHHHHHHHHHHHhhc--CCcEEEEEcCCC
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQE--PVKQGDGPIALVLAPTRELAQQIQTVAKEFSS--ALRNICIFGGTP 81 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~--~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~--~~~~~~~~gg~~ 81 (233)
-+.-+.+++||||||||..|++.+++.+-++. ......+-++++++|+++||..+.+.|.+-+. ++++.-++|+..
T Consensus 124 ~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~q 203 (1230)
T KOG0952|consen 124 KSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQ 203 (1230)
T ss_pred cCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcch
Confidence 45678999999999999999999998887532 12225678999999999999999999988744 899999999965
Q ss_pred C------CCeeEEe------------------------------------------------------------------
Q psy14082 82 K------GPQDCLP------------------------------------------------------------------ 89 (233)
Q Consensus 82 ~------~~~~lv~------------------------------------------------------------------ 89 (233)
- +.|++|.
T Consensus 204 l~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSA 283 (1230)
T KOG0952|consen 204 LTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSA 283 (1230)
T ss_pred hhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeec
Confidence 3 4555555
Q ss_pred -ccchhhhch----------------------------------------------H--HHhcCCCCeEEEEecchhHHH
Q psy14082 90 -LHRFVFNCQ----------------------------------------------Y--EMAKNPAFKVIVFVETKKKVE 120 (233)
Q Consensus 90 -l~r~~~~~~----------------------------------------------~--~~~~~~~~k~iIf~~~~~~~~ 120 (233)
|..+.|+.. + .-.-..+.+++|||.+++.+.
T Consensus 284 TlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti 363 (1230)
T KOG0952|consen 284 TLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETI 363 (1230)
T ss_pred cCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHH
Confidence 000111100 0 112347889999999999999
Q ss_pred HHHHHHhhC----C-------------------CeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccE
Q psy14082 121 DITRALRRE----R-------------------HSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNT 177 (233)
Q Consensus 121 ~l~~~L~~~----~-------------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~ 177 (233)
..++.|.+. | ....+.|+||..++|....+.|+.|.+++|+||..++.|.|+|+--
T Consensus 364 ~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~a- 442 (1230)
T KOG0952|consen 364 RTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYA- 442 (1230)
T ss_pred HHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceE-
Confidence 999998743 1 2356789999999999999999999999999999999999998765
Q ss_pred EEEecCC
Q psy14082 178 VNIGSLQ 184 (233)
Q Consensus 178 VI~~d~P 184 (233)
||..+-+
T Consensus 443 ViIKGT~ 449 (1230)
T KOG0952|consen 443 VIIKGTQ 449 (1230)
T ss_pred EEecCCc
Confidence 4444433
No 89
>PRK09694 helicase Cas3; Provisional
Probab=99.74 E-value=7.3e-17 Score=150.16 Aligned_cols=91 Identities=21% Similarity=0.304 Sum_probs=74.5
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCC---CeeEEEeCCCCHHHH----HHHHHHh-hCCC---CCEEEecccCcCCcCCC
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRER---HSAICIHGDKTQQDR----DYVLNDF-RQGK---APILVATDVAARGLDVE 173 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r----~~~~~~f-~~g~---~~iLv~T~~~~~Gldi~ 173 (233)
.+++++|||||++.++.+++.|++.+ .++..+||+++..+| .++++.| ++|+ ..|||+|+++++|+|+
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI- 637 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL- 637 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-
Confidence 56789999999999999999998765 689999999999999 4577888 6665 4699999999999999
Q ss_pred CccEEEEecCCCCc-ccccceeeE
Q psy14082 174 DVNTVNIGSLQLSA-NHNISQVIE 196 (233)
Q Consensus 174 ~v~~VI~~d~P~~~-~~~i~~~~~ 196 (233)
++|++|....|.+. -|++||+.+
T Consensus 638 d~DvlItdlaPidsLiQRaGR~~R 661 (878)
T PRK09694 638 DFDWLITQLCPVDLLFQRLGRLHR 661 (878)
T ss_pred CCCeEEECCCCHHHHHHHHhccCC
Confidence 68999998888432 244444333
No 90
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=1.4e-16 Score=146.10 Aligned_cols=69 Identities=20% Similarity=0.311 Sum_probs=65.9
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCC
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVE 173 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~ 173 (233)
...+.++||||+|...++.++..|.+.|+++..+|+.+++.++..+.++|+.|. |+||||+++||.|+.
T Consensus 446 ~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIk 514 (908)
T PRK13107 446 RERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIV 514 (908)
T ss_pred HHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCccee
Confidence 457899999999999999999999999999999999999999999999999997 999999999999985
No 91
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.71 E-value=2.4e-16 Score=150.40 Aligned_cols=93 Identities=18% Similarity=0.297 Sum_probs=77.9
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhC------C---CeeEEEeCCCCHHHHHHHHHHhhCCCC-CEEEecccCcCCcCCCC
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRE------R---HSAICIHGDKTQQDRDYVLNDFRQGKA-PILVATDVAARGLDVED 174 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~------~---~~~~~~~~~~~~~~r~~~~~~f~~g~~-~iLv~T~~~~~Gldi~~ 174 (233)
..+|+||||.++++++.+.+.|.+. + ..+..+||+++ ++.+++++|+++.. +|+|+++++++|+|+|.
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCccc
Confidence 3479999999999999999887653 2 24567899876 46789999999887 58999999999999999
Q ss_pred ccEEEEecCCCCccc---ccceeeEEee
Q psy14082 175 VNTVNIGSLQLSANH---NISQVIEVVQ 199 (233)
Q Consensus 175 v~~VI~~d~P~~~~~---~i~~~~~~~~ 199 (233)
+++||.+++|.|... .|||+.+.+.
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 999999999999874 4577777665
No 92
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.70 E-value=1.6e-16 Score=151.31 Aligned_cols=77 Identities=17% Similarity=0.283 Sum_probs=69.9
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCe---eEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEE
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHS---AICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNI 180 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~---~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~ 180 (233)
...+++|||+++...++.+++.|.+.++. +..+||+|++++|..+++. .|..+|+||||++++|+|+|+|++||+
T Consensus 284 ~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID 361 (1294)
T PRK11131 284 EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVID 361 (1294)
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEE
Confidence 45678999999999999999999987764 6789999999999999886 477899999999999999999999999
Q ss_pred ec
Q psy14082 181 GS 182 (233)
Q Consensus 181 ~d 182 (233)
+|
T Consensus 362 ~G 363 (1294)
T PRK11131 362 PG 363 (1294)
T ss_pred CC
Confidence 86
No 93
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.66 E-value=5.8e-15 Score=137.70 Aligned_cols=167 Identities=22% Similarity=0.185 Sum_probs=134.0
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcC--CcEEEEEcCCCC---
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSA--LRNICIFGGTPK--- 82 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~--~~~~~~~gg~~~--- 82 (233)
.-|=++|+--|-|||-+.+=+++-.++ .|.++.+||||--||+|.|++|++-+.+ +++..+.-=.+.
T Consensus 615 pMDRLiCGDVGFGKTEVAmRAAFkAV~--------~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~ 686 (1139)
T COG1197 615 PMDRLICGDVGFGKTEVAMRAAFKAVM--------DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQ 686 (1139)
T ss_pred cchheeecCcCCcHHHHHHHHHHHHhc--------CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHH
Confidence 457789999999999998888887775 4789999999999999999999997554 455555443322
Q ss_pred ----------CCeeEEeccc------------------------------------------------------------
Q psy14082 83 ----------GPQDCLPLHR------------------------------------------------------------ 92 (233)
Q Consensus 83 ----------~~~~lv~l~r------------------------------------------------------------ 92 (233)
+-+|+||-+|
T Consensus 687 ~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqRFGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRd 766 (1139)
T COG1197 687 KEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRD 766 (1139)
T ss_pred HHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEEechhhcCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchh
Confidence 3445777222
Q ss_pred ----------------hhhh-----chH-H-HhcCCCCeEEEEecchhHHHHHHHHHhhC--CCeeEEEeCCCCHHHHHH
Q psy14082 93 ----------------FVFN-----CQY-E-MAKNPAFKVIVFVETKKKVEDITRALRRE--RHSAICIHGDKTQQDRDY 147 (233)
Q Consensus 93 ----------------~~~~-----~~~-~-~~~~~~~k~iIf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~ 147 (233)
++.. +++ . -....++++.-..|..++.+.++..|+++ ..++.+.||.|+..+-++
T Consensus 767 lSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~ 846 (1139)
T COG1197 767 LSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEE 846 (1139)
T ss_pred hhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHH
Confidence 0000 000 1 12347889999999999999999999987 568899999999999999
Q ss_pred HHHHhhCCCCCEEEecccCcCCcCCCCccEEEEec
Q psy14082 148 VLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGS 182 (233)
Q Consensus 148 ~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d 182 (233)
++.+|.+|+++|||||.+.+.|+|+|+++.+|.-+
T Consensus 847 vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~ 881 (1139)
T COG1197 847 VMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIER 881 (1139)
T ss_pred HHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEec
Confidence 99999999999999999999999999999999765
No 94
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.66 E-value=1.3e-14 Score=136.77 Aligned_cols=108 Identities=18% Similarity=0.298 Sum_probs=92.8
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCC---CCEEEecccCcCCcCCCCccEEEEe
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGK---APILVATDVAARGLDVEDVNTVNIG 181 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~iLv~T~~~~~Gldi~~v~~VI~~ 181 (233)
.+.|+|||+......+.+.+.|...++....++|+++..+|..+++.|+... .-+|++|.+++.|+|+..+++||+|
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiy 565 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILY 565 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEe
Confidence 5679999999999999999999999999999999999999999999998643 3478999999999999999999999
Q ss_pred cCCCCcc---------cccc-----eeeEEeecchHHHHHHHHHH
Q psy14082 182 SLQLSAN---------HNIS-----QVIEVVQDYEKEKRLFSLIR 212 (233)
Q Consensus 182 d~P~~~~---------~~i~-----~~~~~~~~~~~~~~~~~~i~ 212 (233)
|+|+++. |||| .+.+++...--++++++...
T Consensus 566 D~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~ 610 (1033)
T PLN03142 566 DSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAY 610 (1033)
T ss_pred CCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHH
Confidence 9999986 6666 56677776655566665443
No 95
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.63 E-value=9.4e-15 Score=133.83 Aligned_cols=79 Identities=27% Similarity=0.418 Sum_probs=69.9
Q ss_pred cCCCCeEEEEecc---hhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEec----ccCcCCcCCCC-
Q psy14082 103 KNPAFKVIVFVET---KKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVAT----DVAARGLDVED- 174 (233)
Q Consensus 103 ~~~~~k~iIf~~~---~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T----~~~~~Gldi~~- 174 (233)
+.-+.-.|||++. ++.++++++.|+++|+++..+|+. ..+.++.|..|+.++||+. ..+.||+|+|.
T Consensus 332 k~lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~r 406 (1187)
T COG1110 332 KKLGDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHR 406 (1187)
T ss_pred HHhCCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhh
Confidence 3455578999999 999999999999999999999994 4789999999999999885 68999999996
Q ss_pred ccEEEEecCCCC
Q psy14082 175 VNTVNIGSLQLS 186 (233)
Q Consensus 175 v~~VI~~d~P~~ 186 (233)
+.++|.|+.|+-
T Consensus 407 irYaIF~GvPk~ 418 (1187)
T COG1110 407 IRYAVFYGVPKF 418 (1187)
T ss_pred eeEEEEecCCce
Confidence 789999999943
No 96
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.61 E-value=8.5e-15 Score=139.99 Aligned_cols=79 Identities=16% Similarity=0.276 Sum_probs=69.6
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCC---CeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEe
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRER---HSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIG 181 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~ 181 (233)
..+.+|||+++...++.+++.|.+.+ ..+..+||+|++++|..+++.+ +..+|++|||++++|+|+|+|++||++
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDs 355 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDT 355 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeC
Confidence 45789999999999999999998764 4578899999999999986654 246899999999999999999999999
Q ss_pred cCCC
Q psy14082 182 SLQL 185 (233)
Q Consensus 182 d~P~ 185 (233)
|++.
T Consensus 356 Gl~r 359 (1283)
T TIGR01967 356 GTAR 359 (1283)
T ss_pred CCcc
Confidence 9664
No 97
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.59 E-value=9.7e-16 Score=102.62 Aligned_cols=73 Identities=27% Similarity=0.469 Sum_probs=67.3
Q ss_pred HHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCcccccceeeE
Q psy14082 124 RALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNISQVIE 196 (233)
Q Consensus 124 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i~~~~~ 196 (233)
+.|++.++++..+||+++.++|..+++.|++++.++||||+.+++|+|+|++++||+||+|+|...|+++.++
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR 73 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGR 73 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhc
Confidence 3678889999999999999999999999999999999999999999999999999999999999877754443
No 98
>KOG0951|consensus
Probab=99.58 E-value=6.5e-14 Score=130.24 Aligned_cols=173 Identities=16% Similarity=0.166 Sum_probs=135.1
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCC---CCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEcCCCC
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEP---VKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFGGTPK 82 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~---~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~gg~~~ 82 (233)
.-+++++||||+|||-..++-+++.+-.+.. ...-...++++++|.+.|++.+...|.+. .-++++.-++|+...
T Consensus 325 ~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l 404 (1674)
T KOG0951|consen 325 DENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQL 404 (1674)
T ss_pred cCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccc
Confidence 4568999999999999999999998876532 11123468999999999999999988776 558899999998552
Q ss_pred ------CCeeEEe-------ccc---------------------------------------------------------
Q psy14082 83 ------GPQDCLP-------LHR--------------------------------------------------------- 92 (233)
Q Consensus 83 ------~~~~lv~-------l~r--------------------------------------------------------- 92 (233)
..|++|+ +.|
T Consensus 405 ~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATL 484 (1674)
T KOG0951|consen 405 GKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATL 484 (1674)
T ss_pred hhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceeeeecccC
Confidence 4455666 000
Q ss_pred -----------------------------------------------hhhhchH-HHhcCCCCeEEEEecchhHHHHHHH
Q psy14082 93 -----------------------------------------------FVFNCQY-EMAKNPAFKVIVFVETKKKVEDITR 124 (233)
Q Consensus 93 -----------------------------------------------~~~~~~~-~~~~~~~~k~iIf~~~~~~~~~l~~ 124 (233)
+-+.|-+ .+......++|||+.+|+.+...+.
T Consensus 485 PNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~ 564 (1674)
T KOG0951|consen 485 PNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTAR 564 (1674)
T ss_pred CchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHH
Confidence 1112211 3444556899999999999988888
Q ss_pred HHhh-------------------------------------CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCc
Q psy14082 125 ALRR-------------------------------------ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAA 167 (233)
Q Consensus 125 ~L~~-------------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~ 167 (233)
.++. ..+...+.|+||+..+|..+.+.|++|++++||+|-.++
T Consensus 565 aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatla 644 (1674)
T KOG0951|consen 565 AIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLA 644 (1674)
T ss_pred HHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhh
Confidence 8872 023678899999999999999999999999999999999
Q ss_pred CCcCCCCccEEEE
Q psy14082 168 RGLDVEDVNTVNI 180 (233)
Q Consensus 168 ~Gldi~~v~~VI~ 180 (233)
+|+|+|.-.++|-
T Consensus 645 wgvnlpahtViik 657 (1674)
T KOG0951|consen 645 WGVNLPAHTVIIK 657 (1674)
T ss_pred hhcCCCcceEEec
Confidence 9999999887763
No 99
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.56 E-value=3.1e-14 Score=129.85 Aligned_cols=107 Identities=26% Similarity=0.327 Sum_probs=93.4
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEec--
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGS-- 182 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d-- 182 (233)
.+.+++|||++++.++.+++.|.+.|+.+..+||++++.+|.++++.|+.|++++||||+.+++|+|+|++++|+++|
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dad 520 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 520 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcc
Confidence 567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---CCCCccccc-----------ceeeEEeecchHHHHHHHHHHh
Q psy14082 183 ---LQLSANHNI-----------SQVIEVVQDYEKEKRLFSLIRE 213 (233)
Q Consensus 183 ---~P~~~~~~i-----------~~~~~~~~~~~~~~~~~~~i~~ 213 (233)
+|.+...|| |+++.+++... ..+.+.|++
T Consensus 521 ifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~--~~~~~ai~~ 563 (655)
T TIGR00631 521 KEGFLRSERSLIQTIGRAARNVNGKVIMYADKIT--DSMQKAIEE 563 (655)
T ss_pred cccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCC--HHHHHHHHH
Confidence 898887666 45566766433 444444444
No 100
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.55 E-value=3.6e-14 Score=103.83 Aligned_cols=96 Identities=33% Similarity=0.535 Sum_probs=88.3
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCC
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQ 184 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P 184 (233)
.+.++||||++.+.++.+++.|.+.+..+..+||+++..+|..++++|+++...+|++|+.+++|+|+|.+++||.+++|
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~ 106 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLP 106 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCC
Confidence 47899999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccceeeEEeec
Q psy14082 185 LSANHNISQVIEVVQD 200 (233)
Q Consensus 185 ~~~~~~i~~~~~~~~~ 200 (233)
++...+++..++..+.
T Consensus 107 ~~~~~~~Q~~GR~~R~ 122 (131)
T cd00079 107 WSPSSYLQRIGRAGRA 122 (131)
T ss_pred CCHHHheecccccccC
Confidence 9998777555555544
No 101
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.50 E-value=2.8e-13 Score=124.15 Aligned_cols=87 Identities=28% Similarity=0.349 Sum_probs=82.2
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecC-
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSL- 183 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~- 183 (233)
.+.+++|||++++.++.+++.|.+.|+++..+||++++.+|..+++.|+.|+.+++|||+.+++|+|+|++++||++|.
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~e 524 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDAD 524 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCc
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred ----CCCccccc
Q psy14082 184 ----QLSANHNI 191 (233)
Q Consensus 184 ----P~~~~~~i 191 (233)
|.+...||
T Consensus 525 ifG~~~~~~~yi 536 (652)
T PRK05298 525 KEGFLRSERSLI 536 (652)
T ss_pred ccccCCCHHHHH
Confidence 77877666
No 102
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.45 E-value=2.4e-13 Score=107.37 Aligned_cols=78 Identities=35% Similarity=0.573 Sum_probs=66.9
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEcC
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFGG 79 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~gg 79 (233)
++.+.+|+|+++.+|||+|||++|++|+++++.... ...+++++|++||++|+.|+.+.++.+ ..++++..+.|+
T Consensus 30 ~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~ 106 (203)
T cd00268 30 IPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGG 106 (203)
T ss_pred HHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECC
Confidence 456778999999999999999999999999987642 135789999999999999999999999 347788888888
Q ss_pred CCC
Q psy14082 80 TPK 82 (233)
Q Consensus 80 ~~~ 82 (233)
.+.
T Consensus 107 ~~~ 109 (203)
T cd00268 107 TSI 109 (203)
T ss_pred CCH
Confidence 765
No 103
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.42 E-value=6.6e-12 Score=114.56 Aligned_cols=65 Identities=17% Similarity=0.111 Sum_probs=53.5
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCC
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPK 82 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~ 82 (233)
+-.+..+-||||||.+|+=.+-..+ ..|.++|+|+|-..|..|+.+.|+..+. .++..++++.+.
T Consensus 218 ~~~Ll~GvTGSGKTEvYl~~i~~~L--------~~GkqvLvLVPEI~Ltpq~~~rf~~rFg-~~v~vlHS~Ls~ 282 (730)
T COG1198 218 APFLLDGVTGSGKTEVYLEAIAKVL--------AQGKQVLVLVPEIALTPQLLARFKARFG-AKVAVLHSGLSP 282 (730)
T ss_pred cceeEeCCCCCcHHHHHHHHHHHHH--------HcCCEEEEEeccccchHHHHHHHHHHhC-CChhhhcccCCh
Confidence 4467788999999999876555544 3478999999999999999999999865 788888888665
No 104
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.42 E-value=4.4e-13 Score=123.68 Aligned_cols=81 Identities=10% Similarity=-0.029 Sum_probs=70.7
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~g 78 (233)
+||.++.++|++++|+||+|||++|++|++..++.. ..++||+||+|||.|+++.+..+ +.++++.+++|
T Consensus 100 ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g--------~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~G 171 (970)
T PRK12899 100 ILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG--------KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVS 171 (970)
T ss_pred HhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc--------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeC
Confidence 478899999999999999999999999999888642 23899999999999999999999 56789999999
Q ss_pred CCCC-------CCeeEEe
Q psy14082 79 GTPK-------GPQDCLP 89 (233)
Q Consensus 79 g~~~-------~~~~lv~ 89 (233)
|.+. .+++++|
T Consensus 172 G~~~~eq~~~y~~DIVyg 189 (970)
T PRK12899 172 GSPLEKRKEIYQCDVVYG 189 (970)
T ss_pred CCCHHHHHHHcCCCEEEE
Confidence 9765 4567777
No 105
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.40 E-value=7.4e-13 Score=88.77 Aligned_cols=76 Identities=34% Similarity=0.511 Sum_probs=68.6
Q ss_pred HHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCcccccceeeE
Q psy14082 121 DITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNISQVIE 196 (233)
Q Consensus 121 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i~~~~~ 196 (233)
.+.+.|...++.+..+||+|+.++|..+++.|+++...+|++|+.+++|+|+|++++||.+++|.+...+++..++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR 77 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGR 77 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcc
Confidence 4667788889999999999999999999999999999999999999999999999999999999999866644443
No 106
>KOG0385|consensus
Probab=99.40 E-value=1.4e-11 Score=110.37 Aligned_cols=109 Identities=14% Similarity=0.272 Sum_probs=96.7
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCC---CCEEEecccCcCCcCCCCccEE
Q psy14082 102 AKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGK---APILVATDVAARGLDVEDVNTV 178 (233)
Q Consensus 102 ~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~iLv~T~~~~~Gldi~~v~~V 178 (233)
....++|++||..-....+-+.+++.-+++...-+.|.++.++|...++.|.... .-.|++|.+.+-|||+..+|+|
T Consensus 483 Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtV 562 (971)
T KOG0385|consen 483 LKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTV 562 (971)
T ss_pred HHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEE
Confidence 4568899999999999999999999999999999999999999999999998765 3378999999999999999999
Q ss_pred EEecCCCCcc---------cccc-----eeeEEeecchHHHHHHHH
Q psy14082 179 NIGSLQLSAN---------HNIS-----QVIEVVQDYEKEKRLFSL 210 (233)
Q Consensus 179 I~~d~P~~~~---------~~i~-----~~~~~~~~~~~~~~~~~~ 210 (233)
|.||..+++. |||| +++++++++.-++++++-
T Consensus 563 IlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveR 608 (971)
T KOG0385|consen 563 ILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVER 608 (971)
T ss_pred EEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHH
Confidence 9999999985 8887 789999987766666554
No 107
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.38 E-value=2e-11 Score=115.33 Aligned_cols=79 Identities=16% Similarity=0.229 Sum_probs=63.4
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCcc--EE
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVN--TV 178 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~--~V 178 (233)
..++++||+++.+..+.++..|... ++. ++..+.. ..|.+++++|++++..||++|+.+.||+|+|+.. +|
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~v 749 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCL 749 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEE
Confidence 5578999999999999999999752 333 3333333 5788999999999999999999999999999876 57
Q ss_pred EEecCCCC
Q psy14082 179 NIGSLQLS 186 (233)
Q Consensus 179 I~~d~P~~ 186 (233)
|...+|..
T Consensus 750 iI~~LPf~ 757 (850)
T TIGR01407 750 VIPRLPFA 757 (850)
T ss_pred EEeCCCCC
Confidence 77777743
No 108
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.38 E-value=1.4e-11 Score=111.60 Aligned_cols=184 Identities=18% Similarity=0.186 Sum_probs=129.1
Q ss_pred ceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCCC--CeeE
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPKG--PQDC 87 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~~--~~~l 87 (233)
-++++++||||||-+ ++.++.+|++. +...|+|+|+-++.|+.|.+..+..+.+.-....++.+...+ .++.
T Consensus 187 raLlvMATGTGKTrT-Aiaii~rL~r~-----~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~n~i~~~~~~~s~~i~ 260 (875)
T COG4096 187 RALLVMATGTGKTRT-AIAIIDRLIKS-----GWVKRVLFLADRNALVDQAYGAFEDFLPFGTKMNKIEDKKGDTSSEIY 260 (875)
T ss_pred eEEEEEecCCCccee-HHHHHHHHHhc-----chhheeeEEechHHHHHHHHHHHHHhCCCccceeeeecccCCcceeEE
Confidence 389999999999999 88899999976 557789999999999999999999995544444444333322 2443
Q ss_pred Ee-------------------------------ccc--------------------------------------------
Q psy14082 88 LP-------------------------------LHR-------------------------------------------- 92 (233)
Q Consensus 88 v~-------------------------------l~r-------------------------------------------- 92 (233)
++ -+|
T Consensus 261 lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~~I~dYFdA~~~gLTATP~~~~d~~T~~~F~g~Pt~~Y 340 (875)
T COG4096 261 LSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWSSILDYFDAATQGLTATPKETIDRSTYGFFNGEPTYAY 340 (875)
T ss_pred EeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhHHHHHHHHHHHHhhccCcccccccccccccCCCcceee
Confidence 33 000
Q ss_pred --------------------------------------------------------------------hhhhchHHHhc-
Q psy14082 93 --------------------------------------------------------------------FVFNCQYEMAK- 103 (233)
Q Consensus 93 --------------------------------------------------------------------~~~~~~~~~~~- 103 (233)
+...+.+++..
T Consensus 341 sleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~ 420 (875)
T COG4096 341 SLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRG 420 (875)
T ss_pred cHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccc
Confidence 11111224444
Q ss_pred -C--CCCeEEEEecchhHHHHHHHHHhhC-----CCeeEEEeCCCCHHHHHHHHHHhhCC--CCCEEEecccCcCCcCCC
Q psy14082 104 -N--PAFKVIVFVETKKKVEDITRALRRE-----RHSAICIHGDKTQQDRDYVLNDFRQG--KAPILVATDVAARGLDVE 173 (233)
Q Consensus 104 -~--~~~k~iIf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~iLv~T~~~~~Gldi~ 173 (233)
. ...||||||.+..|++.+...|.+. +--+..++|+-.+ -...++.|... --+|-++.|++..|+|+|
T Consensus 421 ~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~--~q~~Id~f~~ke~~P~IaitvdlL~TGiDvp 498 (875)
T COG4096 421 ATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQ--AQALIDNFIDKEKYPRIAITVDLLTTGVDVP 498 (875)
T ss_pred cCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchh--hHHHHHHHHhcCCCCceEEehhhhhcCCCch
Confidence 2 2579999999999999999999765 3346667776333 33555666542 355889999999999999
Q ss_pred CccEEEEecCCCCcc---cccceeeEEeecc
Q psy14082 174 DVNTVNIGSLQLSAN---HNISQVIEVVQDY 201 (233)
Q Consensus 174 ~v~~VI~~d~P~~~~---~~i~~~~~~~~~~ 201 (233)
.|..++-+-.=.|.. |-+||..+++...
T Consensus 499 ev~nlVF~r~VrSktkF~QMvGRGTRl~~~~ 529 (875)
T COG4096 499 EVVNLVFDRKVRSKTKFKQMVGRGTRLCPDL 529 (875)
T ss_pred heeeeeehhhhhhHHHHHHHhcCccccCccc
Confidence 999888776666655 4447777766543
No 109
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.36 E-value=1.1e-11 Score=115.28 Aligned_cols=94 Identities=22% Similarity=0.275 Sum_probs=76.4
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHh----hCCCCCEEEecccCcCCcCCCCccE
Q psy14082 102 AKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDF----RQGKAPILVATDVAARGLDVEDVNT 177 (233)
Q Consensus 102 ~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f----~~g~~~iLv~T~~~~~Gldi~~v~~ 177 (233)
....+.+++|-|||++.|..++..|++.+.++..+||.+...+|.+.++.+ +.++..|+|+|.+.+-|+|+ +.|+
T Consensus 436 ~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~ 514 (733)
T COG1203 436 EVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-DFDV 514 (733)
T ss_pred hhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-ccCe
Confidence 344778999999999999999999999988899999999999999888864 45678899999999999999 5888
Q ss_pred EEE-ecCCCCcccccceeeE
Q psy14082 178 VNI-GSLQLSANHNISQVIE 196 (233)
Q Consensus 178 VI~-~d~P~~~~~~i~~~~~ 196 (233)
+|- ..+..|..|+.||+-|
T Consensus 515 mITe~aPidSLIQR~GRv~R 534 (733)
T COG1203 515 LITELAPIDSLIQRAGRVNR 534 (733)
T ss_pred eeecCCCHHHHHHHHHHHhh
Confidence 773 3333444466655444
No 110
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.36 E-value=9.1e-13 Score=100.81 Aligned_cols=74 Identities=24% Similarity=0.328 Sum_probs=63.6
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhc--CCcEEEEEcC
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSS--ALRNICIFGG 79 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~--~~~~~~~~gg 79 (233)
++.+.+|+|+++.+|||+|||++|.+|+++.+.+. ...+++|++|+++|+.|.++.+..++. ++++..++|+
T Consensus 8 ~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 81 (169)
T PF00270_consen 8 IEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGG 81 (169)
T ss_dssp HHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTT
T ss_pred HHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeeccccccccccccccccccccccccccccc
Confidence 34556899999999999999999999999988753 234899999999999999999999943 5788999988
Q ss_pred CC
Q psy14082 80 TP 81 (233)
Q Consensus 80 ~~ 81 (233)
.+
T Consensus 82 ~~ 83 (169)
T PF00270_consen 82 QS 83 (169)
T ss_dssp SC
T ss_pred cc
Confidence 76
No 111
>KOG0387|consensus
Probab=99.35 E-value=9.3e-11 Score=105.48 Aligned_cols=99 Identities=18% Similarity=0.286 Sum_probs=86.3
Q ss_pred CCCCeEEEEecchhHHHHHHHHHh-hCCCeeEEEeCCCCHHHHHHHHHHhhCCCCC--EEEecccCcCCcCCCCccEEEE
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALR-RERHSAICIHGDKTQQDRDYVLNDFRQGKAP--ILVATDVAARGLDVEDVNTVNI 180 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~--iLv~T~~~~~Gldi~~v~~VI~ 180 (233)
..+.++++|..++...+-+...|. ..++++.-+.|..+...|...+++|++++.- .|++|.+.+-|+|+..++-||.
T Consensus 544 kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVII 623 (923)
T KOG0387|consen 544 KQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVII 623 (923)
T ss_pred hCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEE
Confidence 366799999999999999999998 6899999999999999999999999988744 6789999999999999999999
Q ss_pred ecCCCCcc---------cccc-----eeeEEeecch
Q psy14082 181 GSLQLSAN---------HNIS-----QVIEVVQDYE 202 (233)
Q Consensus 181 ~d~P~~~~---------~~i~-----~~~~~~~~~~ 202 (233)
||+.|++. .||| .+.++++..-
T Consensus 624 fDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gT 659 (923)
T KOG0387|consen 624 FDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGT 659 (923)
T ss_pred ECCCCCCccchHHHHHHHhhcCccceEEEEEecCCc
Confidence 99999986 3444 4667776544
No 112
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.34 E-value=3.6e-11 Score=110.66 Aligned_cols=81 Identities=22% Similarity=0.306 Sum_probs=62.4
Q ss_pred CCeEEEEecchhHHHHHHHHHhhC-----CCeeEEEeCCCCHH---------------------HHHHHHHHhhC-CCCC
Q psy14082 106 AFKVIVFVETKKKVEDITRALRRE-----RHSAICIHGDKTQQ---------------------DRDYVLNDFRQ-GKAP 158 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~---------------------~r~~~~~~f~~-g~~~ 158 (233)
+.+++|||.++.+|..+.+.|.+. +..+.+++++.+.+ ....++++|++ +..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 589999999999999999988654 24556666654432 12468889976 6789
Q ss_pred EEEecccCcCCcCCCCccEEEEecCCCC
Q psy14082 159 ILVATDVAARGLDVEDVNTVNIGSLQLS 186 (233)
Q Consensus 159 iLv~T~~~~~Gldi~~v~~VI~~d~P~~ 186 (233)
+||++|++..|+|.|.+++++..-+-.+
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~ 621 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKY 621 (667)
T ss_pred EEEEEcccccccCCCccceEEEeccccc
Confidence 9999999999999999998875444343
No 113
>KOG0953|consensus
Probab=99.30 E-value=5.5e-11 Score=103.36 Aligned_cols=158 Identities=15% Similarity=0.162 Sum_probs=116.6
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCCC-------
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPKG------- 83 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~~------- 83 (233)
++-.+||.||||.- +++++.+. ...++--|.|-||..+++.+... ++.|.+++|.....
T Consensus 194 i~H~GPTNSGKTy~----ALqrl~~a--------ksGvycGPLrLLA~EV~~r~na~--gipCdL~TGeE~~~~~~~~~~ 259 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYR----ALQRLKSA--------KSGVYCGPLRLLAHEVYDRLNAL--GIPCDLLTGEERRFVLDNGNP 259 (700)
T ss_pred EEEeCCCCCchhHH----HHHHHhhh--------ccceecchHHHHHHHHHHHhhhc--CCCccccccceeeecCCCCCc
Confidence 45678999999976 57787653 45788999999999999999988 78888888874331
Q ss_pred CeeE-----------------Ee----c---cc-----------------------hhhhchH-----------------
Q psy14082 84 PQDC-----------------LP----L---HR-----------------------FVFNCQY----------------- 99 (233)
Q Consensus 84 ~~~l-----------------v~----l---~r-----------------------~~~~~~~----------------- 99 (233)
.+.+ |. + .| .++++++
T Consensus 260 a~hvScTVEM~sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsvldlV~~i~k~TGd~vev~~YeRl 339 (700)
T KOG0953|consen 260 AQHVSCTVEMVSVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSVLDLVRKILKMTGDDVEVREYERL 339 (700)
T ss_pred ccceEEEEEEeecCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchHHHHHHHHHhhcCCeeEEEeeccc
Confidence 1110 00 0 00 1111111
Q ss_pred -----------HHhcCCCCeEEEEecchhHHHHHHHHHhhCCCe-eEEEeCCCCHHHHHHHHHHhhC--CCCCEEEeccc
Q psy14082 100 -----------EMAKNPAFKVIVFVETKKKVEDITRALRRERHS-AICIHGDKTQQDRDYVLNDFRQ--GKAPILVATDV 165 (233)
Q Consensus 100 -----------~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~--g~~~iLv~T~~ 165 (233)
.+..-..+-++|-+ +++....+...+.+.|.. +.+++|++|++.|.+--..|++ ++++||||||+
T Consensus 340 ~pL~v~~~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDA 418 (700)
T KOG0953|consen 340 SPLVVEETALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDA 418 (700)
T ss_pred CcceehhhhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecc
Confidence 22223334444443 568899999999888755 9999999999999999999998 89999999999
Q ss_pred CcCCcCCCCccEEEEecCC
Q psy14082 166 AARGLDVEDVNTVNIGSLQ 184 (233)
Q Consensus 166 ~~~Gldi~~v~~VI~~d~P 184 (233)
.+.|+|+ +++-||-|++-
T Consensus 419 IGMGLNL-~IrRiiF~sl~ 436 (700)
T KOG0953|consen 419 IGMGLNL-NIRRIIFYSLI 436 (700)
T ss_pred ccccccc-ceeEEEEeecc
Confidence 9999999 88888888754
No 114
>KOG0948|consensus
Probab=99.24 E-value=5.6e-11 Score=106.33 Aligned_cols=168 Identities=15% Similarity=0.117 Sum_probs=130.5
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGT 80 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~ 80 (233)
||-.+-++.-|++.|.|.+|||++.-.++...+. ...|+++=+|-++|.+|-|+.+..-+. .+.+++|+.
T Consensus 137 aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr--------~kQRVIYTSPIKALSNQKYREl~~EF~--DVGLMTGDV 206 (1041)
T KOG0948|consen 137 AIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR--------EKQRVIYTSPIKALSNQKYRELLEEFK--DVGLMTGDV 206 (1041)
T ss_pred hhhhhcCCceEEEEeecCCCcchHHHHHHHHHHH--------hcCeEEeeChhhhhcchhHHHHHHHhc--ccceeecce
Confidence 4556778899999999999999998887777773 356899999999999999998877654 467788887
Q ss_pred CCCCee--EEe---------------------------------------------------------------------
Q psy14082 81 PKGPQD--CLP--------------------------------------------------------------------- 89 (233)
Q Consensus 81 ~~~~~~--lv~--------------------------------------------------------------------- 89 (233)
..++.. +|-
T Consensus 207 TInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATiPNA~qFAeWI 286 (1041)
T KOG0948|consen 207 TINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATIPNARQFAEWI 286 (1041)
T ss_pred eeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEeccCCCHHHHHHHH
Confidence 665544 222
Q ss_pred --ccc---------------------------------------------------------------------------
Q psy14082 90 --LHR--------------------------------------------------------------------------- 92 (233)
Q Consensus 90 --l~r--------------------------------------------------------------------------- 92 (233)
+++
T Consensus 287 ~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~ 366 (1041)
T KOG0948|consen 287 CHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGP 366 (1041)
T ss_pred HHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCC
Confidence 000
Q ss_pred ----hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCC-------------------------------------
Q psy14082 93 ----FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERH------------------------------------- 131 (233)
Q Consensus 93 ----~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~------------------------------------- 131 (233)
+..++. ..-.....++|||+-+++.|+.++-.+.++.+
T Consensus 367 ~~s~i~kiVk-mi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL 445 (1041)
T KOG0948|consen 367 GDSDIYKIVK-MIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLL 445 (1041)
T ss_pred CcccHHHHHH-HHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHH
Confidence 111111 11234566899999999999999999874311
Q ss_pred --eeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEE
Q psy14082 132 --SAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVN 179 (233)
Q Consensus 132 --~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI 179 (233)
.+.+.|||+-+--++.+.--|.+|-.++|+||..++.|+|.|.-.+|+
T Consensus 446 ~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF 495 (1041)
T KOG0948|consen 446 RRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF 495 (1041)
T ss_pred HhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE
Confidence 467899999988888888899999999999999999999999988876
No 115
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.12 E-value=3.8e-10 Score=105.76 Aligned_cols=184 Identities=15% Similarity=0.098 Sum_probs=133.9
Q ss_pred CCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCC--cEEEEEcCCC
Q psy14082 4 PSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSAL--RNICIFGGTP 81 (233)
Q Consensus 4 ~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~--~~~~~~gg~~ 81 (233)
.+.+|.-|+++||||+|||+..-.++...+. .+.++++.+|.++|.+|.+..+...+..+ .+.+++|+..
T Consensus 130 ~Ler~esVlV~ApTssGKTvVaeyAi~~al~--------~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~ 201 (1041)
T COG4581 130 ILERGESVLVCAPTSSGKTVVAEYAIALALR--------DGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVS 201 (1041)
T ss_pred HHhCCCcEEEEccCCCCcchHHHHHHHHHHH--------cCCceEeccchhhhhhhHHHHHHHHhhhhhhhccceeccee
Confidence 4567899999999999999997777766663 35569999999999999999999886633 4688888877
Q ss_pred CCCee--EEe---------------------------------------------ccc----------------------
Q psy14082 82 KGPQD--CLP---------------------------------------------LHR---------------------- 92 (233)
Q Consensus 82 ~~~~~--lv~---------------------------------------------l~r---------------------- 92 (233)
.++.. +|- +.+
T Consensus 202 IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~ 281 (1041)
T COG4581 202 INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATVPNAEEFAEWIQ 281 (1041)
T ss_pred eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHH
Confidence 65443 222 000
Q ss_pred ----------------------------hhhhchH---------------------------------------------
Q psy14082 93 ----------------------------FVFNCQY--------------------------------------------- 99 (233)
Q Consensus 93 ----------------------------~~~~~~~--------------------------------------------- 99 (233)
+.++.++
T Consensus 282 ~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 361 (1041)
T COG4581 282 RVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSA 361 (1041)
T ss_pred hccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcc
Confidence 0000000
Q ss_pred -----------HHhcCCCCeEEEEecchhHHHHHHHHHhhC----------------------------CC---------
Q psy14082 100 -----------EMAKNPAFKVIVFVETKKKVEDITRALRRE----------------------------RH--------- 131 (233)
Q Consensus 100 -----------~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~----------------------------~~--------- 131 (233)
.+......++|+|+-+++.|+..+..+... ++
T Consensus 362 ~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~ 441 (1041)
T COG4581 362 KGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISA 441 (1041)
T ss_pred cccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHH
Confidence 111234457899999999999888887621 11
Q ss_pred ----eeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCcccccceeeEEeec
Q psy14082 132 ----SAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNISQVIEVVQD 200 (233)
Q Consensus 132 ----~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i~~~~~~~~~ 200 (233)
...+.|++|=+..+..+...|..|-.+++++|..++.|+|.|.-.+|+ .+..++=|...+++++
T Consensus 442 ~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-----~~l~K~dG~~~r~L~~ 509 (1041)
T COG4581 442 LLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-----TSLSKFDGNGHRWLSP 509 (1041)
T ss_pred HHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-----eeeEEecCCceeecCh
Confidence 234789999999999999999999999999999999999999988876 3333333444444443
No 116
>KOG0384|consensus
Probab=99.11 E-value=1.2e-09 Score=102.24 Aligned_cols=108 Identities=17% Similarity=0.278 Sum_probs=95.2
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCC---CEEEecccCcCCcCCCCccEE
Q psy14082 102 AKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKA---PILVATDVAARGLDVEDVNTV 178 (233)
Q Consensus 102 ~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~---~iLv~T~~~~~Gldi~~v~~V 178 (233)
.+..++|+|||..-+...+-|+++|..+++..--+.|.+..+.|..+++.|..... -.|.||.+.+-|||+-.+|.|
T Consensus 695 Lk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTV 774 (1373)
T KOG0384|consen 695 LKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTV 774 (1373)
T ss_pred HhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceE
Confidence 34577999999999999999999999999999999999999999999999987654 489999999999999999999
Q ss_pred EEecCCCCcc---------cccc-----eeeEEeecchHHHHHHH
Q psy14082 179 NIGSLQLSAN---------HNIS-----QVIEVVQDYEKEKRLFS 209 (233)
Q Consensus 179 I~~d~P~~~~---------~~i~-----~~~~~~~~~~~~~~~~~ 209 (233)
|+||..+++. |||| .+.++++...-++.+++
T Consensus 775 IIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilE 819 (1373)
T KOG0384|consen 775 IIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILE 819 (1373)
T ss_pred EEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHH
Confidence 9999999985 8997 57888887655554444
No 117
>KOG0392|consensus
Probab=99.10 E-value=1.8e-09 Score=101.11 Aligned_cols=88 Identities=19% Similarity=0.392 Sum_probs=76.1
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCCC-ee--EEEeCCCCHHHHHHHHHHhhCC-CCCEE-EecccCcCCcCCCCccEEE
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRERH-SA--ICIHGDKTQQDRDYVLNDFRQG-KAPIL-VATDVAARGLDVEDVNTVN 179 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~~-~~--~~~~~~~~~~~r~~~~~~f~~g-~~~iL-v~T~~~~~Gldi~~v~~VI 179 (233)
.++|++|||.-+...+-+.+.|.+... ++ ..+.|..++.+|.++.++|+++ .+++| .+|.+.+-|+|+.++|.||
T Consensus 1339 sqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVV 1418 (1549)
T KOG0392|consen 1339 SQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVV 1418 (1549)
T ss_pred ccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEE
Confidence 568999999999999999999866533 33 3578999999999999999998 68876 6788999999999999999
Q ss_pred EecCCCCc---------ccccc
Q psy14082 180 IGSLQLSA---------NHNIS 192 (233)
Q Consensus 180 ~~d~P~~~---------~~~i~ 192 (233)
.++=.|++ .||||
T Consensus 1419 FvEHDWNPMrDLQAMDRAHRIG 1440 (1549)
T KOG0392|consen 1419 FVEHDWNPMRDLQAMDRAHRIG 1440 (1549)
T ss_pred EEecCCCchhhHHHHHHHHhhc
Confidence 99988887 38887
No 118
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.08 E-value=3.9e-10 Score=102.16 Aligned_cols=71 Identities=8% Similarity=0.055 Sum_probs=59.8
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh-----cCCcEEEEEcCC
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS-----SALRNICIFGGT 80 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~-----~~~~~~~~~gg~ 80 (233)
..+..+++.|+||+|||++|++|++..+... .+.++||++||++|+.|+.+.+..+. .++++..+.|+.
T Consensus 14 ~~~~~lliEA~TGtGKTlAYLlpal~~~~~~------~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lkGr~ 87 (636)
T TIGR03117 14 RQKRIGMLEASTGVGKTLAMIMAALTMLKER------PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFPGSQ 87 (636)
T ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc------cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEECCc
Confidence 4578899999999999999999999887532 35789999999999999999888774 256778888887
Q ss_pred CC
Q psy14082 81 PK 82 (233)
Q Consensus 81 ~~ 82 (233)
++
T Consensus 88 nY 89 (636)
T TIGR03117 88 EF 89 (636)
T ss_pred cc
Confidence 66
No 119
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.06 E-value=6.2e-10 Score=103.55 Aligned_cols=100 Identities=20% Similarity=0.207 Sum_probs=85.1
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCC---Ccc---
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVE---DVN--- 176 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~---~v~--- 176 (233)
...+.++||||+|++.++.++..|.+.|+++..+|+ .+.+|+..+.+|+.+...|+||||+++||+|++ +|.
T Consensus 595 ~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vG 672 (1025)
T PRK12900 595 QKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELG 672 (1025)
T ss_pred hhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhC
Confidence 347889999999999999999999999999999997 588999999999999999999999999999999 554
Q ss_pred --EEEEecCCCCcc---ccc---------ceeeEEeecchHH
Q psy14082 177 --TVNIGSLQLSAN---HNI---------SQVIEVVQDYEKE 204 (233)
Q Consensus 177 --~VI~~d~P~~~~---~~i---------~~~~~~~~~~~~~ 204 (233)
+||+++.|.|.. |++ |.+..|++..+.-
T Consensus 673 GL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 673 GLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 348888888884 555 4555677765533
No 120
>KOG1123|consensus
Probab=99.05 E-value=2.2e-09 Score=92.62 Aligned_cols=76 Identities=21% Similarity=0.303 Sum_probs=63.4
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCC-CCCEEEecccCcCCcCCCCccEEEEe
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQG-KAPILVATDVAARGLDVEDVNTVNIG 181 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~iLv~T~~~~~Gldi~~v~~VI~~ 181 (233)
...+.|+|||..+.-...+.+-.| .--+++|..++.+|..+++.|+-+ .++.++-+.+....+|+|..+++|+.
T Consensus 540 E~RgDKiIVFsDnvfALk~YAikl-----~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQI 614 (776)
T KOG1123|consen 540 ERRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQI 614 (776)
T ss_pred HhcCCeEEEEeccHHHHHHHHHHc-----CCceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEE
Confidence 347789999998877777776665 234789999999999999999854 57888888999999999999999987
Q ss_pred cC
Q psy14082 182 SL 183 (233)
Q Consensus 182 d~ 183 (233)
..
T Consensus 615 SS 616 (776)
T KOG1123|consen 615 SS 616 (776)
T ss_pred cc
Confidence 53
No 121
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.03 E-value=7.3e-10 Score=104.05 Aligned_cols=68 Identities=21% Similarity=0.215 Sum_probs=56.6
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHH-HHHHHh--hcCCcEEEEEcCCCC
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQ-TVAKEF--SSALRNICIFGGTPK 82 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~-~~~~~~--~~~~~~~~~~gg~~~ 82 (233)
..+.+++++|+||||||++|++|++... .+.+++|++||++|++|+. +.+..+ ..++++.++.|+.++
T Consensus 262 ~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~~~~~~~~~kg~~~y 332 (820)
T PRK07246 262 HDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEEVKAIQEVFHIDCHSLKGPQNY 332 (820)
T ss_pred hCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHHHHHHHHhcCCcEEEEECCccc
Confidence 3578899999999999999999988754 2467999999999999994 666666 456788899998766
No 122
>KOG0389|consensus
Probab=99.01 E-value=1.5e-08 Score=91.54 Aligned_cols=111 Identities=18% Similarity=0.332 Sum_probs=94.2
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCC--CCEEEecccCcCCcCCCCccEEEE
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGK--APILVATDVAARGLDVEDVNTVNI 180 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~iLv~T~~~~~Gldi~~v~~VI~ 180 (233)
...+.|++||.......+-+...|..++++..-+.|.....+|..++..|...+ .-+|.+|.+.+-|||+..+++||.
T Consensus 774 k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIi 853 (941)
T KOG0389|consen 774 KKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVII 853 (941)
T ss_pred hhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEE
Confidence 346699999999999999999999999999999999999999999999998765 236789999999999999999999
Q ss_pred ecCCCCc---------ccccc-----eeeEEeecchHHHHHHHHHHh
Q psy14082 181 GSLQLSA---------NHNIS-----QVIEVVQDYEKEKRLFSLIRE 213 (233)
Q Consensus 181 ~d~P~~~---------~~~i~-----~~~~~~~~~~~~~~~~~~i~~ 213 (233)
||...++ .||+| .+++++++.--++.++++-++
T Consensus 854 hD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~ 900 (941)
T KOG0389|consen 854 HDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKT 900 (941)
T ss_pred eecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHH
Confidence 9987766 38887 567888876666665555443
No 123
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.01 E-value=1.3e-08 Score=92.48 Aligned_cols=83 Identities=19% Similarity=0.264 Sum_probs=63.6
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCC-CCEEEecccCcCCcCCCCc-----
Q psy14082 102 AKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGK-APILVATDVAARGLDVEDV----- 175 (233)
Q Consensus 102 ~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~iLv~T~~~~~Gldi~~v----- 175 (233)
....+.++||.+.+....+.+...|.+.|++..++++.-..++ .+++.+ .|+ ..|-|||++++||.|+.--
T Consensus 423 ~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~E-A~IIa~--AG~~gaVTIATNMAGRGTDIkLg~~~~~ 499 (764)
T PRK12326 423 VHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEE-ARIIAE--AGKYGAVTVSTQMAGRGTDIRLGGSDEA 499 (764)
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhH-HHHHHh--cCCCCcEEEEecCCCCccCeecCCCccc
Confidence 3458899999999999999999999999999999998633322 444433 243 4588999999999998621
Q ss_pred ----------cEEEEecCCCCc
Q psy14082 176 ----------NTVNIGSLQLSA 187 (233)
Q Consensus 176 ----------~~VI~~d~P~~~ 187 (233)
=+||--..|.|.
T Consensus 500 ~~~~V~~~GGLhVIgTerheSr 521 (764)
T PRK12326 500 DRDRVAELGGLHVIGTGRHRSE 521 (764)
T ss_pred chHHHHHcCCcEEEeccCCchH
Confidence 268877777665
No 124
>KOG0947|consensus
Probab=98.98 E-value=5e-09 Score=96.23 Aligned_cols=78 Identities=24% Similarity=0.294 Sum_probs=67.0
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHhhCCC---------------------------------------eeEEEeCCCCH
Q psy14082 102 AKNPAFKVIVFVETKKKVEDITRALRRERH---------------------------------------SAICIHGDKTQ 142 (233)
Q Consensus 102 ~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~---------------------------------------~~~~~~~~~~~ 142 (233)
.....-++++||=+++.|++.++.|...++ ...++|||.=+
T Consensus 563 ~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLP 642 (1248)
T KOG0947|consen 563 RKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLP 642 (1248)
T ss_pred hhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchH
Confidence 334456899999999999999999984321 45778999988
Q ss_pred HHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEE
Q psy14082 143 QDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVN 179 (233)
Q Consensus 143 ~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI 179 (233)
-.++-+.--|..|-++||+||..++.|+|.|.-.+|+
T Consensus 643 ivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF 679 (1248)
T KOG0947|consen 643 IVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVF 679 (1248)
T ss_pred HHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEe
Confidence 8888888889999999999999999999999988886
No 125
>KOG0390|consensus
Probab=98.97 E-value=4.2e-08 Score=89.89 Aligned_cols=79 Identities=10% Similarity=0.277 Sum_probs=64.1
Q ss_pred EEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCC---EEEecccCcCCcCCCCccEEEEecCCCC
Q psy14082 110 IVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAP---ILVATDVAARGLDVEDVNTVNIGSLQLS 186 (233)
Q Consensus 110 iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---iLv~T~~~~~Gldi~~v~~VI~~d~P~~ 186 (233)
.+..|-+...+.+....+-.|+.+..+||.|+..+|..+++.|++.... .|.+|.+++.||++-+.+.||.||++++
T Consensus 599 v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWN 678 (776)
T KOG0390|consen 599 VLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWN 678 (776)
T ss_pred EEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCC
Confidence 3333444444444444455699999999999999999999999986544 6688899999999999999999999999
Q ss_pred cc
Q psy14082 187 AN 188 (233)
Q Consensus 187 ~~ 188 (233)
++
T Consensus 679 Pa 680 (776)
T KOG0390|consen 679 PA 680 (776)
T ss_pred ch
Confidence 96
No 126
>KOG1002|consensus
Probab=98.92 E-value=6.4e-08 Score=83.69 Aligned_cols=114 Identities=18% Similarity=0.286 Sum_probs=96.1
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCC-CCC-EEEecccCcCCcCCCCccEEE
Q psy14082 102 AKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQG-KAP-ILVATDVAARGLDVEDVNTVN 179 (233)
Q Consensus 102 ~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-iLv~T~~~~~Gldi~~v~~VI 179 (233)
.+...-|.|||.......+.+...|.+.|++|+-+-|+|++..|...++.|++. +++ .|++-.+.+-.+|+...++|+
T Consensus 634 ~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVF 713 (791)
T KOG1002|consen 634 ERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVF 713 (791)
T ss_pred HcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeE
Confidence 344557899999999999999999999999999999999999999999999875 455 457777888889999999999
Q ss_pred EecCCCCcc---------cccc-----eeeEEeecchHHHHHHHHHHhhc
Q psy14082 180 IGSLQLSAN---------HNIS-----QVIEVVQDYEKEKRLFSLIRELG 215 (233)
Q Consensus 180 ~~d~P~~~~---------~~i~-----~~~~~~~~~~~~~~~~~~i~~~~ 215 (233)
..|+=+++. |+|| ++++|+=+..-+.+++++-++-.
T Consensus 714 mmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa 763 (791)
T KOG1002|consen 714 MMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKA 763 (791)
T ss_pred eecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHh
Confidence 999988874 6776 67889877677788887776643
No 127
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.91 E-value=2.8e-08 Score=92.32 Aligned_cols=64 Identities=11% Similarity=-0.044 Sum_probs=54.7
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEcCCCC
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFGGTPK 82 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~gg~~~ 82 (233)
-|+.+.||+|||++..+|++...+ .|..+-|++||.-||.|-++.+..+ +.++++.++.++.+.
T Consensus 98 ~iaEM~TGEGKTLvA~l~a~l~al--------~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~ 163 (913)
T PRK13103 98 KIAEMRTGEGKTLVGTLAVYLNAL--------SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPP 163 (913)
T ss_pred ccccccCCCCChHHHHHHHHHHHH--------cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCH
Confidence 478899999999999999986664 3667999999999999999999998 568899998887543
No 128
>KOG0950|consensus
Probab=98.90 E-value=1.4e-08 Score=93.48 Aligned_cols=171 Identities=16% Similarity=0.193 Sum_probs=126.4
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEcC
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFGG 79 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~gg 79 (233)
.|.++.+++.|-.+||+.|||++.-+-++..++.. +..++.+.|-..-++.-...+..+ ..++.+...+|.
T Consensus 234 ~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~ 306 (1008)
T KOG0950|consen 234 LPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGR 306 (1008)
T ss_pred chhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEecceeehhHHHHhhhhhhccccCCcchhhccc
Confidence 57778899999999999999999988888877753 446788888877777766666666 346677777776
Q ss_pred CCCCC-----eeEEe-------------------------------------------------------------ccc-
Q psy14082 80 TPKGP-----QDCLP-------------------------------------------------------------LHR- 92 (233)
Q Consensus 80 ~~~~~-----~~lv~-------------------------------------------------------------l~r- 92 (233)
.+... .+-|+ +++
T Consensus 307 ~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSAT 386 (1008)
T KOG0950|consen 307 FPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSAT 386 (1008)
T ss_pred CCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecc
Confidence 54321 11222 000
Q ss_pred --------------------------------------------------------------hhhhchHHHhcCCCCeEE
Q psy14082 93 --------------------------------------------------------------FVFNCQYEMAKNPAFKVI 110 (233)
Q Consensus 93 --------------------------------------------------------------~~~~~~~~~~~~~~~k~i 110 (233)
++.+|.+ ....+.++|
T Consensus 387 i~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~te--t~~e~~~~l 464 (1008)
T KOG0950|consen 387 IPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTE--TAPEGSSVL 464 (1008)
T ss_pred cCChHHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhh--hhhcCCeEE
Confidence 1111111 112556799
Q ss_pred EEecchhHHHHHHHHHhhC--------------------------------------CCeeEEEeCCCCHHHHHHHHHHh
Q psy14082 111 VFVETKKKVEDITRALRRE--------------------------------------RHSAICIHGDKTQQDRDYVLNDF 152 (233)
Q Consensus 111 If~~~~~~~~~l~~~L~~~--------------------------------------~~~~~~~~~~~~~~~r~~~~~~f 152 (233)
|||++++.|+.++..+... -..+.++|.+++.++|..+...|
T Consensus 465 vfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~af 544 (1008)
T KOG0950|consen 465 VFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAF 544 (1008)
T ss_pred EEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHH
Confidence 9999999999888666421 12567889999999999999999
Q ss_pred hCCCCCEEEecccCcCCcCCCCccEEEEe
Q psy14082 153 RQGKAPILVATDVAARGLDVEDVNTVNIG 181 (233)
Q Consensus 153 ~~g~~~iLv~T~~~~~Gldi~~v~~VI~~ 181 (233)
++|-..+++||+.++-|.+.|...++|-.
T Consensus 545 r~g~i~vl~aTSTlaaGVNLPArRVIira 573 (1008)
T KOG0950|consen 545 REGNIFVLVATSTLAAGVNLPARRVIIRA 573 (1008)
T ss_pred HhcCeEEEEecchhhccCcCCcceeEEeC
Confidence 99999999999999999999999988854
No 129
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.89 E-value=5.8e-08 Score=89.82 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=55.6
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCC-CHHHHHHHHHHhhCCC-CCEEEecccCcCCcCCC
Q psy14082 102 AKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDK-TQQDRDYVLNDFRQGK-APILVATDVAARGLDVE 173 (233)
Q Consensus 102 ~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~~r~~~~~~f~~g~-~~iLv~T~~~~~Gldi~ 173 (233)
....+.++||-+.+.+..+.++..|.+.|++..++++.- ....-.+++.. .|. ..|-|||++++||.|+.
T Consensus 420 ~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 420 MHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred HHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 445889999999999999999999999999999999863 22333444444 344 55889999999999973
No 130
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.79 E-value=2.4e-07 Score=86.34 Aligned_cols=83 Identities=17% Similarity=0.303 Sum_probs=73.2
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHhh----CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccE
Q psy14082 102 AKNPAFKVIVFVETKKKVEDITRALRR----ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNT 177 (233)
Q Consensus 102 ~~~~~~k~iIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~ 177 (233)
.....+-++||.+-....+.+.+.|++ ....+..+||.++.+++..+++--..|.-+|+++|++++.++-+|++.+
T Consensus 255 ~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~ 334 (845)
T COG1643 255 LREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRY 334 (845)
T ss_pred ccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEE
Confidence 445678899999999999999999987 3477889999999999999888877777779999999999999999999
Q ss_pred EEEecCC
Q psy14082 178 VNIGSLQ 184 (233)
Q Consensus 178 VI~~d~P 184 (233)
||.-++-
T Consensus 335 VIDsG~a 341 (845)
T COG1643 335 VIDSGLA 341 (845)
T ss_pred EecCCcc
Confidence 9977754
No 131
>KOG4150|consensus
Probab=98.76 E-value=2.6e-08 Score=87.41 Aligned_cols=167 Identities=19% Similarity=0.203 Sum_probs=122.3
Q ss_pred CCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh----hcCCcEEEEEcCCCCCCee--------
Q psy14082 19 LLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF----SSALRNICIFGGTPKGPQD-------- 86 (233)
Q Consensus 19 sGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~----~~~~~~~~~~gg~~~~~~~-------- 86 (233)
.-|.++|-.|+.+.+... -..-+|++-|+..+++.+.+.+.++ ..+.....+.|....+...
T Consensus 400 L~~~~~~~~~~~~~~~~~------~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~ 473 (1034)
T KOG4150|consen 400 LAKSLCYNVPVFEELCKD------TNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELAN 473 (1034)
T ss_pred hhhccccccHHHHHHHhc------ccceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcC
Confidence 457778888888776642 3456899999999999988887777 4566667777776653322
Q ss_pred -----EEe------------------cc---c----hhhhchHHH--hcCCCCeEEEEecchhHHHHHHHHHhhC----C
Q psy14082 87 -----CLP------------------LH---R----FVFNCQYEM--AKNPAFKVIVFVETKKKVEDITRALRRE----R 130 (233)
Q Consensus 87 -----lv~------------------l~---r----~~~~~~~~~--~~~~~~k~iIf~~~~~~~~~l~~~L~~~----~ 130 (233)
+|. +. | ++....+++ .-..+-++|-||..++.|+.+-..-++. +
T Consensus 474 ~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~ 553 (1034)
T KOG4150|consen 474 LSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETA 553 (1034)
T ss_pred CcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhh
Confidence 222 00 0 111111111 1236679999999999999876665542 1
Q ss_pred ----CeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc
Q psy14082 131 ----HSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI 191 (233)
Q Consensus 131 ----~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i 191 (233)
-.+..+.||.+.++|.++.+..-.|...-+++|++++-|+|+...|.|++.++|-|....-
T Consensus 554 ~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~ 618 (1034)
T KOG4150|consen 554 PHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLW 618 (1034)
T ss_pred HHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHH
Confidence 1345678999999999999999999999999999999999999999999999999987444
No 132
>COG4889 Predicted helicase [General function prediction only]
Probab=98.72 E-value=1.3e-08 Score=93.09 Aligned_cols=93 Identities=18% Similarity=0.234 Sum_probs=69.8
Q ss_pred CCeEEEEecchhHHHHHHHHHhh-------------CCCeeEE--EeCCCCHHHHHHHHHH---hhCCCCCEEEecccCc
Q psy14082 106 AFKVIVFVETKKKVEDITRALRR-------------ERHSAIC--IHGDKTQQDRDYVLND---FRQGKAPILVATDVAA 167 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~-------------~~~~~~~--~~~~~~~~~r~~~~~~---f~~g~~~iLv~T~~~~ 167 (233)
..|+|-||.+.++.+.+++.+.+ .++.+.+ +.|.|+..+|...+.. |...+++||-....++
T Consensus 460 ~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLS 539 (1518)
T COG4889 460 MQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLS 539 (1518)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhh
Confidence 35789999999888888776652 2444444 5588999999555443 5667899999999999
Q ss_pred CCcCCCCccEEEEecCCCCcccccceeeEEe
Q psy14082 168 RGLDVEDVNTVNIGSLQLSANHNISQVIEVV 198 (233)
Q Consensus 168 ~Gldi~~v~~VI~~d~P~~~~~~i~~~~~~~ 198 (233)
+|+|+|..|-||.||+-++.-.-++.+++++
T Consensus 540 EGVDVPaLDsViFf~pr~smVDIVQaVGRVM 570 (1518)
T COG4889 540 EGVDVPALDSVIFFDPRSSMVDIVQAVGRVM 570 (1518)
T ss_pred cCCCccccceEEEecCchhHHHHHHHHHHHH
Confidence 9999999999999998887765554333333
No 133
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.66 E-value=1.1e-06 Score=81.61 Aligned_cols=70 Identities=17% Similarity=0.275 Sum_probs=55.9
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCC-CCHHHHHHHHHHhhCCC-CCEEEecccCcCCcCCC
Q psy14082 102 AKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGD-KTQQDRDYVLNDFRQGK-APILVATDVAARGLDVE 173 (233)
Q Consensus 102 ~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~r~~~~~~f~~g~-~~iLv~T~~~~~Gldi~ 173 (233)
....+.++||-+.|.+..+.++..|.+.|+...+++.. .....-.+++.. .|+ ..|-|||++++||-|+.
T Consensus 435 ~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 435 MHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred HHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 34588999999999999999999999999999999986 333333444444 344 45889999999999973
No 134
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.59 E-value=3.1e-07 Score=66.94 Aligned_cols=68 Identities=28% Similarity=0.278 Sum_probs=52.7
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhc-CCcEEEEEcCCCC
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSS-ALRNICIFGGTPK 82 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~-~~~~~~~~gg~~~ 82 (233)
+.+++.++||+|||.+++..+.+.... ....+++|++|++.++.|+.+.+..... ...+..+.++...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS------LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSI 69 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc------ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcch
Confidence 367899999999999977777665543 2456899999999999999999998843 4666666665443
No 135
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.53 E-value=2.7e-07 Score=88.21 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=56.0
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHH----HHHh-hcCCcEEEEEcCCC
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTV----AKEF-SSALRNICIFGGTP 81 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~----~~~~-~~~~~~~~~~gg~~ 81 (233)
.+.++++.|+||+|||++|++|++..... .+.+++|-++|+.|-+|+.+. +++. ..+++++++.|..+
T Consensus 275 ~~~~~~iEA~TGtGKTlaYLlpa~~~a~~-------~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~~~~~~~~~~~lKGr~n 347 (928)
T PRK08074 275 DSEHALIEAGTGTGKSLAYLLPAAYFAKK-------KEEPVVISTYTIQLQQQLLEKDIPLLQKIFPFPVEAALLKGRSH 347 (928)
T ss_pred cCCCEEEECCCCCchhHHHHHHHHHHhhc-------cCCeEEEEcCCHHHHHHHHHhhHHHHHHHcCCCceEEEEEcccc
Confidence 57789999999999999999999865542 367899999999999998763 4444 44778899998876
Q ss_pred C
Q psy14082 82 K 82 (233)
Q Consensus 82 ~ 82 (233)
+
T Consensus 348 Y 348 (928)
T PRK08074 348 Y 348 (928)
T ss_pred c
Confidence 5
No 136
>KOG1000|consensus
Probab=98.52 E-value=2.2e-05 Score=68.36 Aligned_cols=112 Identities=18% Similarity=0.359 Sum_probs=90.9
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCC-CC-EEEecccCcCCcCCCCccEEE
Q psy14082 102 AKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGK-AP-ILVATDVAARGLDVEDVNTVN 179 (233)
Q Consensus 102 ~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-iLv~T~~~~~Gldi~~v~~VI 179 (233)
...++.|.+||+.-....+.+...+.+.++...-+.|..+..+|....+.|+..+ .. -+++-.+++.|+++...+.|+
T Consensus 488 ~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VV 567 (689)
T KOG1000|consen 488 PDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVV 567 (689)
T ss_pred ccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEE
Confidence 3457789999999999999999999999999999999999999999999998764 33 335567889999999999999
Q ss_pred EecCCCCcc---------cccce-----eeEEeecchHHHHHHHHHHh
Q psy14082 180 IGSLQLSAN---------HNISQ-----VIEVVQDYEKEKRLFSLIRE 213 (233)
Q Consensus 180 ~~d~P~~~~---------~~i~~-----~~~~~~~~~~~~~~~~~i~~ 213 (233)
...+|+++. |+||+ +..++...-..+..+.++.+
T Consensus 568 FaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~ 615 (689)
T KOG1000|consen 568 FAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQ 615 (689)
T ss_pred EEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHH
Confidence 999999974 77764 33455554455666666654
No 137
>KOG0386|consensus
Probab=98.51 E-value=8.6e-07 Score=82.26 Aligned_cols=108 Identities=19% Similarity=0.357 Sum_probs=90.3
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCC---EEEecccCcCCcCCCCccEEE
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAP---ILVATDVAARGLDVEDVNTVN 179 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---iLv~T~~~~~Gldi~~v~~VI 179 (233)
+..+++++.||.-..-..-+..+|.-.++...-+.|....++|-..++.|+....+ .|.+|...+.|+|+...|.||
T Consensus 723 katgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtvi 802 (1157)
T KOG0386|consen 723 KATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVI 802 (1157)
T ss_pred HhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEE
Confidence 34778999999999999999999988888989999999999999999999987644 678999999999999999999
Q ss_pred EecCCCCcc---------cccc-----eeeEEeecchHHHHHHHH
Q psy14082 180 IGSLQLSAN---------HNIS-----QVIEVVQDYEKEKRLFSL 210 (233)
Q Consensus 180 ~~d~P~~~~---------~~i~-----~~~~~~~~~~~~~~~~~~ 210 (233)
.||..+++. |+|| ++.++++-...++.+++.
T Consensus 803 ifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~ 847 (1157)
T KOG0386|consen 803 IFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAE 847 (1157)
T ss_pred EecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHH
Confidence 999999885 6675 566666654544444443
No 138
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.49 E-value=6.6e-06 Score=76.38 Aligned_cols=82 Identities=16% Similarity=0.200 Sum_probs=64.5
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCC-CCEEEecccCcCCcCCCCcc-----
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGK-APILVATDVAARGLDVEDVN----- 176 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~iLv~T~~~~~Gldi~~v~----- 176 (233)
...+.++||.|.+.+..+.++..|.+.|+...++++.-. +++..+-+ +.|. ..|.|||++++||.|+.--.
T Consensus 423 ~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~ 499 (925)
T PRK12903 423 HKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLEL 499 (925)
T ss_pred HhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHc
Confidence 357899999999999999999999999999999988633 33333332 3454 56899999999999986433
Q ss_pred ---EEEEecCCCCc
Q psy14082 177 ---TVNIGSLQLSA 187 (233)
Q Consensus 177 ---~VI~~d~P~~~ 187 (233)
|||....|.|.
T Consensus 500 GGLhVIgTerheSr 513 (925)
T PRK12903 500 GGLYVLGTDKAESR 513 (925)
T ss_pred CCcEEEecccCchH
Confidence 89988887665
No 139
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.49 E-value=4.2e-07 Score=75.77 Aligned_cols=60 Identities=5% Similarity=-0.104 Sum_probs=48.4
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
..|.++++.||||+|||++|++|++..+...+.. .++.++++.++|..+..|....+++.
T Consensus 25 ~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 25 DRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred HcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 4688999999999999999999999877653211 12358999999999999988887765
No 140
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.49 E-value=4.2e-07 Score=75.77 Aligned_cols=60 Identities=5% Similarity=-0.104 Sum_probs=48.4
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
..|.++++.||||+|||++|++|++..+...+.. .++.++++.++|..+..|....+++.
T Consensus 25 ~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 25 DRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred HcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 4688999999999999999999999877653211 12358999999999999988887765
No 141
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.47 E-value=3.6e-07 Score=70.71 Aligned_cols=59 Identities=29% Similarity=0.262 Sum_probs=49.5
Q ss_pred CCCC-CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhc
Q psy14082 5 SESG-CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSS 69 (233)
Q Consensus 5 ~~~g-~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~ 69 (233)
+..+ +..++.++||||||.+++.+++..+... ...++++++|++.++.|+.+.+..+..
T Consensus 20 ~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~------~~~~~l~~~p~~~~~~~~~~~~~~~~~ 79 (201)
T smart00487 20 LLSGLRDVILAAPTGSGKTLAALLPALEALKRG------KGKRVLVLVPTRELAEQWAEELKKLGP 79 (201)
T ss_pred HHcCCCcEEEECCCCCchhHHHHHHHHHHhccc------CCCcEEEEeCCHHHHHHHHHHHHHHhc
Confidence 3445 7899999999999999899888877643 245799999999999999999998843
No 142
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.46 E-value=4.5e-07 Score=69.82 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=41.6
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS 68 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~ 68 (233)
++.+++.+|||||||.+++. ++..+.. ++++++|+..|+.|+.+.+..+.
T Consensus 25 ~~~~ll~~~tGsGKT~~~~~-~~~~l~~----------~~l~~~p~~~l~~Q~~~~~~~~~ 74 (184)
T PF04851_consen 25 ERRVLLNAPTGSGKTIIALA-LILELAR----------KVLIVAPNISLLEQWYDEFDDFG 74 (184)
T ss_dssp CSEEEEEESTTSSHHHHHHH-HHHHHHC----------EEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCcChhhhh-hhhcccc----------ceeEecCHHHHHHHHHHHHHHhh
Confidence 57899999999999999664 4444432 79999999999999999998773
No 143
>KOG0922|consensus
Probab=98.38 E-value=1.9e-05 Score=70.79 Aligned_cols=83 Identities=17% Similarity=0.345 Sum_probs=72.1
Q ss_pred HhcCCCCeEEEEecchhHHHHHHHHHhhCC----C----eeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCC
Q psy14082 101 MAKNPAFKVIVFVETKKKVEDITRALRRER----H----SAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDV 172 (233)
Q Consensus 101 ~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~----~----~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi 172 (233)
....+.+-++||-...++++...+.|.+.- - -+..+||.++.+++..+++.-..|..+++++|++++.-+-+
T Consensus 253 h~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI 332 (674)
T KOG0922|consen 253 HLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTI 332 (674)
T ss_pred HccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEe
Confidence 345677899999999999999999997651 1 24679999999999999988888999999999999999999
Q ss_pred CCccEEEEecC
Q psy14082 173 EDVNTVNIGSL 183 (233)
Q Consensus 173 ~~v~~VI~~d~ 183 (233)
+++.+||.-++
T Consensus 333 ~GI~YVVDsG~ 343 (674)
T KOG0922|consen 333 DGIRYVVDSGF 343 (674)
T ss_pred cceEEEEcCCc
Confidence 99999997665
No 144
>KOG0391|consensus
Probab=98.37 E-value=2.7e-06 Score=80.20 Aligned_cols=108 Identities=14% Similarity=0.324 Sum_probs=93.4
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCC--CCEEEecccCcCCcCCCCccEEE
Q psy14082 102 AKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGK--APILVATDVAARGLDVEDVNTVN 179 (233)
Q Consensus 102 ~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~iLv~T~~~~~Gldi~~v~~VI 179 (233)
.+..+++++||+.-.+..+-+..+|.-+|+...-+.|....++|...+++|+... .-.+.+|...+.|+|+-+.|.||
T Consensus 1272 Lk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVv 1351 (1958)
T KOG0391|consen 1272 LKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVV 1351 (1958)
T ss_pred HHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEE
Confidence 3568899999999999999999999999999999999999999999999998764 22567899999999999999999
Q ss_pred EecCCCCcc---------cccc-----eeeEEeecchHHHHHHH
Q psy14082 180 IGSLQLSAN---------HNIS-----QVIEVVQDYEKEKRLFS 209 (233)
Q Consensus 180 ~~d~P~~~~---------~~i~-----~~~~~~~~~~~~~~~~~ 209 (233)
.||..+++. |+|| ...++++++--+..+++
T Consensus 1352 FYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLk 1395 (1958)
T KOG0391|consen 1352 FYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILK 1395 (1958)
T ss_pred EecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHh
Confidence 999999874 8898 45778887765555544
No 145
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.36 E-value=3e-06 Score=77.96 Aligned_cols=100 Identities=19% Similarity=0.153 Sum_probs=78.8
Q ss_pred ecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCCCCeeEEeccch
Q psy14082 14 KITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPKGPQDCLPLHRF 93 (233)
Q Consensus 14 ~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~~~~~lv~l~r~ 93 (233)
.+.+|||||..|+-.+-..+. .|.++|||+|...|+.|+.+.++..+.
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~--------~Gk~vLvLvPEi~lt~q~~~rl~~~f~------------------------ 213 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLR--------AGRGALVVVPDQRDVDRLEAALRALLG------------------------ 213 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHH--------cCCeEEEEecchhhHHHHHHHHHHHcC------------------------
Confidence 344699999998775555442 367899999999999999999976521
Q ss_pred hhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCC
Q psy14082 94 VFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVE 173 (233)
Q Consensus 94 ~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~ 173 (233)
+..+..+|++++..+|.+.+.+.++|+.+|+|.|..+. -.=++
T Consensus 214 ------------------------------------~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv-FaP~~ 256 (665)
T PRK14873 214 ------------------------------------AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV-FAPVE 256 (665)
T ss_pred ------------------------------------CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE-EeccC
Confidence 02567899999999999999999999999999997544 34456
Q ss_pred CccEEEEec
Q psy14082 174 DVNTVNIGS 182 (233)
Q Consensus 174 ~v~~VI~~d 182 (233)
+..+||..|
T Consensus 257 ~LgLIIvdE 265 (665)
T PRK14873 257 DLGLVAIWD 265 (665)
T ss_pred CCCEEEEEc
Confidence 777777665
No 146
>KOG0949|consensus
Probab=98.34 E-value=7.9e-06 Score=76.01 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=47.3
Q ss_pred eeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEec
Q psy14082 132 SAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGS 182 (233)
Q Consensus 132 ~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d 182 (233)
.+.+.|++|+...|..+.--||.|...||++|..++-|+|.|.-.+|+--|
T Consensus 964 GiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gD 1014 (1330)
T KOG0949|consen 964 GIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGD 1014 (1330)
T ss_pred cccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEecc
Confidence 456789999999999999999999999999999999999999998888777
No 147
>KOG4439|consensus
Probab=98.31 E-value=2.1e-05 Score=70.93 Aligned_cols=86 Identities=17% Similarity=0.332 Sum_probs=71.9
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhC--CCCCEE-EecccCcCCcCCCCccEEE
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQ--GKAPIL-VATDVAARGLDVEDVNTVN 179 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~iL-v~T~~~~~Gldi~~v~~VI 179 (233)
.....+++|...-.....-+...+++.|.....+||....++|..+++.|+. |..+|+ ++-.+.+-|+|+-..+|+|
T Consensus 743 ~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHli 822 (901)
T KOG4439|consen 743 TSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLI 822 (901)
T ss_pred hcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEE
Confidence 4455667777777777777888888899999999999999999999999974 445655 6667888999999999999
Q ss_pred EecCCCCcc
Q psy14082 180 IGSLQLSAN 188 (233)
Q Consensus 180 ~~d~P~~~~ 188 (233)
..|+=|++.
T Consensus 823 lvDlHWNPa 831 (901)
T KOG4439|consen 823 LVDLHWNPA 831 (901)
T ss_pred EEecccCHH
Confidence 999999985
No 148
>KOG0924|consensus
Probab=98.27 E-value=1.5e-05 Score=71.69 Aligned_cols=81 Identities=14% Similarity=0.235 Sum_probs=68.7
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhhC----------CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCC
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRRE----------RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDV 172 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi 172 (233)
....+-.+||..-.+.++.....+.+. ++.+..+++.++.+.+.++++.-..|..+++|||++++.-+.+
T Consensus 560 ~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi 639 (1042)
T KOG0924|consen 560 SGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTI 639 (1042)
T ss_pred cCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceee
Confidence 345578899998887777666665431 5788899999999999999999888999999999999999999
Q ss_pred CCccEEEEecC
Q psy14082 173 EDVNTVNIGSL 183 (233)
Q Consensus 173 ~~v~~VI~~d~ 183 (233)
|++.+||..++
T Consensus 640 ~gI~yVID~Gy 650 (1042)
T KOG0924|consen 640 PGIRYVIDTGY 650 (1042)
T ss_pred cceEEEEecCc
Confidence 99999998764
No 149
>KOG0951|consensus
Probab=98.23 E-value=2.4e-05 Score=74.60 Aligned_cols=159 Identities=18% Similarity=0.111 Sum_probs=111.9
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh---hcCCcEEEEEcCCCCC-
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF---SSALRNICIFGGTPKG- 83 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~---~~~~~~~~~~gg~~~~- 83 (233)
...+++.+|+|||||++.-++++. +....+++++.|..+.+...+..+.+- ..+..+..+.|..+.+
T Consensus 1159 nd~v~vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~l 1229 (1674)
T KOG0951|consen 1159 NDNVLVGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDL 1229 (1674)
T ss_pred cceEEEecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccch
Confidence 345899999999999998887775 145678999999999998888777765 3466777777775542
Q ss_pred -----CeeEEe-------cc------------------------------c-----------------------------
Q psy14082 84 -----PQDCLP-------LH------------------------------R----------------------------- 92 (233)
Q Consensus 84 -----~~~lv~-------l~------------------------------r----------------------------- 92 (233)
.+++|+ ++ |
T Consensus 1230 kl~~~~~vii~tpe~~d~lq~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lana~d~ig~s 1309 (1674)
T KOG0951|consen 1230 KLLQKGQVIISTPEQWDLLQSIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSLANARDLIGAS 1309 (1674)
T ss_pred HHhhhcceEEechhHHHHHhhhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhhccchhhcccc
Confidence 333444 00 0
Q ss_pred ---------------------------------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhC----
Q psy14082 93 ---------------------------------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRE---- 129 (233)
Q Consensus 93 ---------------------------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~---- 129 (233)
+-.+++ ....+++++||+++++++..++..+...
T Consensus 1310 ~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~---~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~ 1386 (1674)
T KOG0951|consen 1310 SSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVR---HAGNRKPAIVFLPTRKHARLVAVDLVTFSHAD 1386 (1674)
T ss_pred ccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHH---HhcCCCCeEEEeccchhhhhhhhccchhhccC
Confidence 111111 2346789999999999999888776521
Q ss_pred ------------------CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEE
Q psy14082 130 ------------------RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNI 180 (233)
Q Consensus 130 ------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~ 180 (233)
.++..+-|.+++..+..-+-+-|..|.++++|...- ..|+-.. .+.||.
T Consensus 1387 ~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~-~~lVvv 1453 (1674)
T KOG0951|consen 1387 EPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLK-AHLVVV 1453 (1674)
T ss_pred cHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-ccccccc-ceEEEE
Confidence 223333488999999988889999999999988766 5566543 334443
No 150
>KOG0920|consensus
Probab=98.21 E-value=2.6e-05 Score=73.23 Aligned_cols=82 Identities=17% Similarity=0.307 Sum_probs=71.7
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHhhC-------CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCC
Q psy14082 102 AKNPAFKVIVFVETKKKVEDITRALRRE-------RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVED 174 (233)
Q Consensus 102 ~~~~~~k~iIf~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~ 174 (233)
.....+.+|||-+.-..+..+.+.|..+ .+-+..+|+.|+..++..+.+.--.|..+|+++|++++-.+-|++
T Consensus 409 ~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdD 488 (924)
T KOG0920|consen 409 EREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDD 488 (924)
T ss_pred cCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccC
Confidence 3345788999999999999999999753 245677899999999999999999999999999999999999999
Q ss_pred ccEEEEecC
Q psy14082 175 VNTVNIGSL 183 (233)
Q Consensus 175 v~~VI~~d~ 183 (233)
|-+||..+.
T Consensus 489 VvyVIDsG~ 497 (924)
T KOG0920|consen 489 VVYVIDSGL 497 (924)
T ss_pred eEEEEecCe
Confidence 999997653
No 151
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.21 E-value=3.9e-06 Score=78.06 Aligned_cols=68 Identities=10% Similarity=0.009 Sum_probs=52.2
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHH-HHHh----hcCCcEEEEEcCCCC
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTV-AKEF----SSALRNICIFGGTPK 82 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~-~~~~----~~~~~~~~~~gg~~~ 82 (233)
+..+++.|+||+|||++|++|++..... .+.+++|=++|..|=+|+.+. +-.+ ..+++++++-|-.++
T Consensus 49 ~~~lviEAgTGtGKTlaYLlPai~~A~~-------~~k~vVIST~T~~LQeQL~~kDlP~l~~~l~~~~~~~llKGr~nY 121 (697)
T PRK11747 49 GRILVIEAGTGVGKTLSYLLAGIPIARA-------EKKKLVISTATVALQEQLVSKDLPLLLKISGLDFKFTLAKGRGRY 121 (697)
T ss_pred cceEEEECCCCcchhHHHHHHHHHHHHH-------cCCeEEEEcCCHHHHHHHHhhhhhHHHHHcCCCceEEEEcCcccc
Confidence 4678999999999999999999876543 356799999999999998643 2222 345677777777665
No 152
>KOG0926|consensus
Probab=98.20 E-value=2.2e-05 Score=71.92 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=41.1
Q ss_pred eEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecC
Q psy14082 133 AICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSL 183 (233)
Q Consensus 133 ~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~ 183 (233)
+..+++-++.+++..+++.--.|..-++|+|++++.-+.+|++.+||..+.
T Consensus 607 vLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr 657 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGR 657 (1172)
T ss_pred EeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccc
Confidence 344455567777777777777788889999999999999999999998765
No 153
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.16 E-value=5.2e-05 Score=70.04 Aligned_cols=65 Identities=22% Similarity=0.297 Sum_probs=52.5
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVED 174 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~ 174 (233)
..+.++-||++|...++.+++.....+.++..++|.-+..+. +.| ++++|++-|+.+.-|+++.+
T Consensus 280 ~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~Sf~~ 344 (824)
T PF02399_consen 280 NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLSFEE 344 (824)
T ss_pred hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEeccch
Confidence 366778899999999999999998888899888887655532 234 57899999999999998853
No 154
>PF13245 AAA_19: Part of AAA domain
Probab=98.15 E-value=9.3e-06 Score=53.74 Aligned_cols=53 Identities=19% Similarity=0.173 Sum_probs=38.3
Q ss_pred CCc-eeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy14082 8 GCQ-NFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVA 64 (233)
Q Consensus 8 g~d-~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~ 64 (233)
+.. +++++++|||||.+ ++..+..+..... ..+.++++++||+..++++.+.+
T Consensus 9 ~~~~~vv~g~pGtGKT~~-~~~~i~~l~~~~~---~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTT-LAARIAELLAARA---DPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred hCCeEEEECCCCCCHHHH-HHHHHHHHHHHhc---CCCCeEEEECCCHHHHHHHHHHH
Confidence 444 44599999999977 4445555543210 12668999999999999998888
No 155
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.01 E-value=6.3e-05 Score=71.66 Aligned_cols=110 Identities=15% Similarity=0.287 Sum_probs=91.7
Q ss_pred CCCC--eEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCC-CCC-EEEecccCcCCcCCCCccEEE
Q psy14082 104 NPAF--KVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQG-KAP-ILVATDVAARGLDVEDVNTVN 179 (233)
Q Consensus 104 ~~~~--k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-iLv~T~~~~~Gldi~~v~~VI 179 (233)
..+. ++++|+......+-+...+...++....++|+++.+.|...+++|.++ +.. .++++.+++.|+|+...++||
T Consensus 707 ~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi 786 (866)
T COG0553 707 EEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVI 786 (866)
T ss_pred hhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEE
Confidence 3444 999999999999999999999998899999999999999999999986 334 667788999999999999999
Q ss_pred EecCCCCcc---------cccc-----eeeEEeecchHHHHHHHHHHh
Q psy14082 180 IGSLQLSAN---------HNIS-----QVIEVVQDYEKEKRLFSLIRE 213 (233)
Q Consensus 180 ~~d~P~~~~---------~~i~-----~~~~~~~~~~~~~~~~~~i~~ 213 (233)
+||+.+++. |+|| .+.+++.....++++++..++
T Consensus 787 ~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~ 834 (866)
T COG0553 787 LFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEK 834 (866)
T ss_pred EeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHH
Confidence 999999985 5665 566677665555666665544
No 156
>KOG0923|consensus
Probab=97.97 E-value=0.00011 Score=66.17 Aligned_cols=83 Identities=14% Similarity=0.283 Sum_probs=70.8
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHhhC---------CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCC
Q psy14082 102 AKNPAFKVIVFVETKKKVEDITRALRRE---------RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDV 172 (233)
Q Consensus 102 ~~~~~~k~iIf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi 172 (233)
...+.+-+|||..-.+..+...+.|++. .+-+..+|+++|.+.+..+++---.|..+|++||++++.-+.+
T Consensus 469 ~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTI 548 (902)
T KOG0923|consen 469 LTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTI 548 (902)
T ss_pred eccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceee
Confidence 4456788999999998888888777643 2456789999999999999998888999999999999999999
Q ss_pred CCccEEEEecCC
Q psy14082 173 EDVNTVNIGSLQ 184 (233)
Q Consensus 173 ~~v~~VI~~d~P 184 (233)
+++.+||.-++-
T Consensus 549 dgI~yViDpGf~ 560 (902)
T KOG0923|consen 549 DGIKYVIDPGFV 560 (902)
T ss_pred cCeEEEecCccc
Confidence 999999976653
No 157
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.90 E-value=1.7e-05 Score=73.53 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=47.1
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
-.|..+++.||||+|||++|++|.+..-... +..++|.++|+.|-+|+.+....+
T Consensus 32 ~~~~~~~iEapTGtGKTl~yL~~al~~~~~~-------~~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 32 KGGEGLLIEAPTGTGKTLAYLLPALAYAREE-------GKKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred cCCCcEEEECCCCccHHHHHHHHHHHHHHHc-------CCcEEEECCCHHHHHHHHHhhcch
Confidence 3466699999999999999999999877643 477999999999999998887765
No 158
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.72 E-value=7.3e-05 Score=57.27 Aligned_cols=81 Identities=22% Similarity=0.379 Sum_probs=59.8
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhhCCC--eeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc--cCcCCcCCCC--cc
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRRERH--SAICIHGDKTQQDRDYVLNDFRQGKAPILVATD--VAARGLDVED--VN 176 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~--~~~~Gldi~~--v~ 176 (233)
....+.++||+++.+..+.+.+.+.+... ...++.. +..++...++.|+.++..+|+++. .+.+|+|+|+ +.
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r 83 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLR 83 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEE
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhh
Confidence 34558999999999999999999987642 1122322 255788999999999999999998 9999999996 77
Q ss_pred EEEEecCCC
Q psy14082 177 TVNIGSLQL 185 (233)
Q Consensus 177 ~VI~~d~P~ 185 (233)
.||...+|-
T Consensus 84 ~vii~glPf 92 (167)
T PF13307_consen 84 AVIIVGLPF 92 (167)
T ss_dssp EEEEES---
T ss_pred eeeecCCCC
Confidence 899999984
No 159
>KOG0388|consensus
Probab=97.68 E-value=0.00033 Score=63.68 Aligned_cols=87 Identities=17% Similarity=0.292 Sum_probs=79.6
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCC-CEEEecccCcCCcCCCCccEEEE
Q psy14082 102 AKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKA-PILVATDVAARGLDVEDVNTVNI 180 (233)
Q Consensus 102 ~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~-~iLv~T~~~~~Gldi~~v~~VI~ 180 (233)
.+..++++++|+.-.+..+.+.++|.-.++...-+.|.....+|..++.+|+..++ -.|.+|.+.+-||++...|.||.
T Consensus 1040 LkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViF 1119 (1185)
T KOG0388|consen 1040 LKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIF 1119 (1185)
T ss_pred hhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEE
Confidence 35578999999999999999999999999999999999999999999999998653 36789999999999999999999
Q ss_pred ecCCCCcc
Q psy14082 181 GSLQLSAN 188 (233)
Q Consensus 181 ~d~P~~~~ 188 (233)
||..+++.
T Consensus 1120 YdSDWNPT 1127 (1185)
T KOG0388|consen 1120 YDSDWNPT 1127 (1185)
T ss_pred ecCCCCcc
Confidence 99999885
No 160
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.62 E-value=0.00016 Score=67.73 Aligned_cols=58 Identities=5% Similarity=-0.038 Sum_probs=49.3
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
+-.|.+.++.||||+|||++.+.|.+....+. ...+++++.+.|..=..|..+++++.
T Consensus 26 l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~-----~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 26 LDRGDEAILEMPSGTGKTISLLSLILAYQQEK-----PEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred hccCCceEEeCCCCCCccHHHHHHHHHHHHhc-----cccccEEEEcccchHHHHHHHHHHhh
Confidence 35688999999999999999999999876543 23468999999999999999999986
No 161
>KOG1015|consensus
Probab=97.51 E-value=0.00031 Score=65.74 Aligned_cols=89 Identities=19% Similarity=0.242 Sum_probs=76.0
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhh----------------------CCCeeEEEeCCCCHHHHHHHHHHhhCCC---C
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRR----------------------ERHSAICIHGDKTQQDRDYVLNDFRQGK---A 157 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~----------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~ 157 (233)
..-+.+.|||..+..+.+.+..+|.. .|...+-+.|..+..+|......|++-. .
T Consensus 1139 eeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRa 1218 (1567)
T KOG1015|consen 1139 EEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRA 1218 (1567)
T ss_pred HHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCccccee
Confidence 35788999999999999988888862 2446677889999999999999998753 2
Q ss_pred C-EEEecccCcCCcCCCCccEEEEecCCCCccccc
Q psy14082 158 P-ILVATDVAARGLDVEDVNTVNIGSLQLSANHNI 191 (233)
Q Consensus 158 ~-iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i 191 (233)
+ .||+|.+.+-|+|+-.++.||+||..|++.+.+
T Consensus 1219 Rl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDt 1253 (1567)
T KOG1015|consen 1219 RLFLISTRAGSLGINLVAANRVIIFDASWNPSYDT 1253 (1567)
T ss_pred EEEEEeeccCccccceeecceEEEEecccCCccch
Confidence 2 789999999999999999999999999998665
No 162
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.44 E-value=0.00022 Score=52.74 Aligned_cols=53 Identities=19% Similarity=0.133 Sum_probs=38.0
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
|.--++-..||+|||--.+.-++..... ++.++|||.|||.++..+++.++..
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~-------~~~rvLvL~PTRvva~em~~aL~~~ 56 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK-------RRLRVLVLAPTRVVAEEMYEALKGL 56 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHTTTS
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH-------ccCeEEEecccHHHHHHHHHHHhcC
Confidence 4456778899999998755445544443 4779999999999999999999766
No 163
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.39 E-value=0.00017 Score=57.52 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=42.1
Q ss_pred CCCCCc-eeEecCCCCCchHHhHHHHHHhhhcc-CCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy14082 5 SESGCQ-NFSKITNYLLSPPQYMLPAAVHISHQ-EPVKQGDGPIALVLAPTRELAQQIQTVAKE 66 (233)
Q Consensus 5 ~~~g~d-~i~~a~tGsGKT~~~~lp~l~~l~~~-~~~~~~~~~~~lil~PtreL~~Q~~~~~~~ 66 (233)
+++..+ .++++|+|||||.+ +..++..+... .......+.++|+++||..-++++.+.+.+
T Consensus 13 ~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 13 ALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HCTSSE-EEEE-STTSSHHHH-HHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHcCCCCEEEECCCCCChHHH-HHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 355666 89999999999955 55566555211 001114578899999999999999999988
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.18 E-value=0.0014 Score=54.48 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=45.1
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh-c-CCcEEEEEcCC
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS-S-ALRNICIFGGT 80 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~-~-~~~~~~~~gg~ 80 (233)
...+..++.-..|+|||+. ++.++..+....+. .+...+||+||. .+..||.+++.++. + .+++....|+.
T Consensus 23 ~~~~g~lL~de~GlGKT~~-~i~~~~~l~~~~~~--~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~ 95 (299)
T PF00176_consen 23 SPPRGGLLADEMGLGKTIT-AIALISYLKNEFPQ--RGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDS 95 (299)
T ss_dssp TTT-EEEE---TTSSHHHH-HHHHHHHHHHCCTT--SS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSC
T ss_pred cCCCCEEEEECCCCCchhh-hhhhhhhhhhcccc--ccccceeEeecc-chhhhhhhhhcccccccccccccccccc
Confidence 3456678888899999988 55566655543110 112259999999 88899999999995 2 57777777665
No 165
>KOG0331|consensus
Probab=97.11 E-value=0.0031 Score=56.15 Aligned_cols=127 Identities=24% Similarity=0.349 Sum_probs=91.3
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEec-----ccCcCC-cC
Q psy14082 102 AKNPAFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVAT-----DVAARG-LD 171 (233)
Q Consensus 102 ~~~~~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T-----~~~~~G-ld 171 (233)
.+..+.++||.++||+.+.++.+.+.+. ++++.+++|+.+...+..-+++ ..+|+|+| |.+.+| +|
T Consensus 161 ~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~----gvdiviaTPGRl~d~le~g~~~ 236 (519)
T KOG0331|consen 161 SRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLER----GVDVVIATPGRLIDLLEEGSLN 236 (519)
T ss_pred cCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhc----CCcEEEeCChHHHHHHHcCCcc
Confidence 3456778999999999999999998765 3568999999998888887765 58999999 233333 33
Q ss_pred CCCccEEE-------------------------------EecCCCC--------------------------ccccccee
Q psy14082 172 VEDVNTVN-------------------------------IGSLQLS--------------------------ANHNISQV 194 (233)
Q Consensus 172 i~~v~~VI-------------------------------~~d~P~~--------------------------~~~~i~~~ 194 (233)
+..+.+++ .|...+. +.+.|.+.
T Consensus 237 l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qi 316 (519)
T KOG0331|consen 237 LSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQI 316 (519)
T ss_pred ccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhh
Confidence 33333333 2221111 12333577
Q ss_pred eEEeecchHHHHHHHHHHhhc----CcccccccchhhHhhhc
Q psy14082 195 IEVVQDYEKEKRLFSLIRELG----KYTLITQESSSTLSEMV 232 (233)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~l~ 232 (233)
+..+.+.++..++.++|+++. +..++|.++++..++|+
T Consensus 317 ve~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~ 358 (519)
T KOG0331|consen 317 VEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELA 358 (519)
T ss_pred hhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHH
Confidence 777887788899999998873 57899999999998875
No 166
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.06 E-value=0.0022 Score=61.86 Aligned_cols=83 Identities=17% Similarity=0.253 Sum_probs=65.3
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhhCCC--eeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCC--ccEE
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRRERH--SAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVED--VNTV 178 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~--v~~V 178 (233)
...+++++||+++.+..+.+++.|.+... ....+.-+++...|.+++++|+.++-.||++|+.+.+|+|+|+ ..+|
T Consensus 749 ~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~v 828 (928)
T PRK08074 749 KATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCL 828 (928)
T ss_pred HhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEE
Confidence 34567999999999999999999975432 1223332444456889999999988889999999999999997 4789
Q ss_pred EEecCCC
Q psy14082 179 NIGSLQL 185 (233)
Q Consensus 179 I~~d~P~ 185 (233)
|...+|-
T Consensus 829 iI~kLPF 835 (928)
T PRK08074 829 VIVRLPF 835 (928)
T ss_pred EEecCCC
Confidence 9888875
No 167
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.04 E-value=0.0045 Score=54.31 Aligned_cols=86 Identities=16% Similarity=0.213 Sum_probs=77.1
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc--cCcCCcCCCCccEEEE
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD--VAARGLDVEDVNTVNI 180 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~--~~~~Gldi~~v~~VI~ 180 (233)
......++||+++--.--.+.+.|++.+++...+|...+..+...+-..|..|+.++|+.|. -.-+=..+.++..||-
T Consensus 297 ~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viF 376 (442)
T PF06862_consen 297 DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIF 376 (442)
T ss_pred ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEE
Confidence 66778999999999999999999999999999999999999999999999999999999995 2333456788999999
Q ss_pred ecCCCCcc
Q psy14082 181 GSLQLSAN 188 (233)
Q Consensus 181 ~d~P~~~~ 188 (233)
|++|..+.
T Consensus 377 Y~~P~~p~ 384 (442)
T PF06862_consen 377 YGPPENPQ 384 (442)
T ss_pred ECCCCChh
Confidence 99999986
No 168
>KOG1803|consensus
Probab=97.03 E-value=0.001 Score=59.52 Aligned_cols=47 Identities=13% Similarity=0.006 Sum_probs=39.4
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAK 65 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~ 65 (233)
.++++|+|||||.+ +.-+++++..+ +.++|+.+||.+-++.+.+.+.
T Consensus 204 ~~I~GPPGTGKT~T-lvEiI~qlvk~-------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 204 LIIHGPPGTGKTRT-LVEIISQLVKQ-------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred eEeeCCCCCCceee-HHHHHHHHHHc-------CCeEEEEcCchHHHHHHHHHhc
Confidence 67899999999988 55567666654 6789999999999999999765
No 169
>KOG2340|consensus
Probab=96.97 E-value=0.0071 Score=53.56 Aligned_cols=87 Identities=13% Similarity=0.169 Sum_probs=72.0
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc--CcCCcCCCCccEEEEec
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV--AARGLDVEDVNTVNIGS 182 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~--~~~Gldi~~v~~VI~~d 182 (233)
...-++|+.++--.--.+...+++.+++.+.+|...++..-..+-.-|-.|...+|+-|.= .-|-.++.+|.-||.|.
T Consensus 551 t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYq 630 (698)
T KOG2340|consen 551 TESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQ 630 (698)
T ss_pred ccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEec
Confidence 3456799999988888899999988888888888777777777778899999999999953 44567899999999999
Q ss_pred CCCCccccc
Q psy14082 183 LQLSANHNI 191 (233)
Q Consensus 183 ~P~~~~~~i 191 (233)
+|.++.=|.
T Consensus 631 pP~~P~FYs 639 (698)
T KOG2340|consen 631 PPNNPHFYS 639 (698)
T ss_pred CCCCcHHHH
Confidence 999986443
No 170
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.97 E-value=0.0021 Score=53.66 Aligned_cols=57 Identities=14% Similarity=-0.004 Sum_probs=41.3
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
....+++.|..|||||.+.+-=++..+.... -...+.|++++|+..+..+.+++...
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~----~~~~~Il~lTft~~aa~e~~~ri~~~ 68 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG----VPPERILVLTFTNAAAQEMRERIREL 68 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS----STGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHHHHHHhhcccc----CChHHheecccCHHHHHHHHHHHHHh
Confidence 3567899999999999884444443333321 23456999999999999999999886
No 171
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.94 E-value=0.005 Score=57.50 Aligned_cols=76 Identities=14% Similarity=0.273 Sum_probs=64.9
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhh----CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc-CcCCcCCCCccEE
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRR----ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV-AARGLDVEDVNTV 178 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~-~~~Gldi~~v~~V 178 (233)
..+.++++.++|+.-+.+.++.+++ .++++..+||+++..+|.+.++...+|+.+|+|+|.. +...+++.++.+|
T Consensus 308 ~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lv 387 (681)
T PRK10917 308 EAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLV 387 (681)
T ss_pred HcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceE
Confidence 3577999999999999988888765 3689999999999999999999999999999999974 4445667788877
Q ss_pred E
Q psy14082 179 N 179 (233)
Q Consensus 179 I 179 (233)
|
T Consensus 388 V 388 (681)
T PRK10917 388 I 388 (681)
T ss_pred E
Confidence 6
No 172
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.92 E-value=0.0047 Score=58.77 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=62.1
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCC--CccEEEEe
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVE--DVNTVNIG 181 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~--~v~~VI~~ 181 (233)
..+++++|++++.+..+.+++.|....... ...|.-. .+..++++|++++..||++|+.+.+|+|+| +...||..
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 456899999999999999999997665444 5555322 256689999998889999999999999997 35566777
Q ss_pred cCCC
Q psy14082 182 SLQL 185 (233)
Q Consensus 182 d~P~ 185 (233)
.+|-
T Consensus 722 kLPF 725 (820)
T PRK07246 722 RLPF 725 (820)
T ss_pred cCCC
Confidence 7773
No 173
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.84 E-value=0.0074 Score=56.50 Aligned_cols=78 Identities=19% Similarity=0.419 Sum_probs=60.1
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhh----CCCCCEEEecccCcCCcCCCC--ccEE
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFR----QGKAPILVATDVAARGLDVED--VNTV 178 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~iLv~T~~~~~Gldi~~--v~~V 178 (233)
..+.++||+++.+..+.++..|....-.....+|.. .+..+++.|+ .++..||++|..+.+|+|+|+ ..+|
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 344589999999999999999864322334556643 4667787776 467779999999999999986 7889
Q ss_pred EEecCCC
Q psy14082 179 NIGSLQL 185 (233)
Q Consensus 179 I~~d~P~ 185 (233)
|...+|-
T Consensus 610 II~kLPF 616 (697)
T PRK11747 610 IITKIPF 616 (697)
T ss_pred EEEcCCC
Confidence 9999884
No 174
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.79 E-value=0.0018 Score=59.85 Aligned_cols=61 Identities=8% Similarity=-0.075 Sum_probs=45.6
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGG 79 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg 79 (233)
...++++|+|||||.+ +..++..+.. .+.++|+++||..-++++.+.+... ++++..+...
T Consensus 174 ~~~lI~GpPGTGKT~t-~~~ii~~~~~-------~g~~VLv~a~sn~Avd~l~e~l~~~--~~~vvRlg~~ 234 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRT-LVELIRQLVK-------RGLRVLVTAPSNIAVDNLLERLALC--DQKIVRLGHP 234 (637)
T ss_pred CeEEEEcCCCCCHHHH-HHHHHHHHHH-------cCCCEEEEcCcHHHHHHHHHHHHhC--CCcEEEeCCc
Confidence 4588999999999976 5556655553 2568999999999999999988765 4554444433
No 175
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.75 E-value=0.01 Score=55.45 Aligned_cols=77 Identities=12% Similarity=0.173 Sum_probs=64.9
Q ss_pred CCCeEEEEecchhHHHHHHHHHhh-CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEec
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRR-ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGS 182 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d 182 (233)
.+.++++.++++..+.++.+.|++ .+.++..+||+++..+|.+.+.+..+|+.+|+|+|.... -..+.++.+||.-+
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEEC
Confidence 367999999999999999999976 478899999999999999999999999999999997432 24566778777543
No 176
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=96.72 E-value=0.004 Score=59.42 Aligned_cols=52 Identities=8% Similarity=-0.104 Sum_probs=41.5
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAK 65 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~ 65 (233)
..++.+.++||||||.+|+-.+++.... .+..+.||+||+.+.-..+.+.+.
T Consensus 59 ~~n~~~~M~TGtGKT~~~~~~i~~l~~~------~~~~~fii~vp~~aI~egv~~~l~ 110 (986)
T PRK15483 59 KANIDIKMETGTGKTYVYTRLMYELHQK------YGLFKFIIVVPTPAIKEGTRNFIQ 110 (986)
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHHHH------cCCcEEEEEeCCHHHHHHHHHHhh
Confidence 4688999999999999988877665433 345679999999998888877665
No 177
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.60 E-value=0.01 Score=54.99 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=63.1
Q ss_pred CCCeEEEEecchhHHHHHHHHHhh----CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccC-cCCcCCCCccEEE
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRR----ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVA-ARGLDVEDVNTVN 179 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~-~~Gldi~~v~~VI 179 (233)
.+.++++.++|+.-+++.++.+++ .|+++..+||+++..+|...++...+|+.+|+|+|... ...+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 567999999999999988887765 37899999999999999999999999999999999653 3345666777665
No 178
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=96.58 E-value=0.0073 Score=56.00 Aligned_cols=56 Identities=16% Similarity=0.009 Sum_probs=43.5
Q ss_pred ceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEE
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICI 76 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~ 76 (233)
..++.+.||||||++.+ -+++.+ +..+|||+|+..+|.|+++.++.|+++-.+..+
T Consensus 31 ~~~l~Gvtgs~kt~~~a-~~~~~~----------~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f 86 (655)
T TIGR00631 31 HQTLLGVTGSGKTFTMA-NVIAQV----------NRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYF 86 (655)
T ss_pred cEEEECCCCcHHHHHHH-HHHHHh----------CCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 55689999999998833 455433 224899999999999999999999776446666
No 179
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.56 E-value=0.0093 Score=55.49 Aligned_cols=80 Identities=21% Similarity=0.328 Sum_probs=62.8
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCe-eEEEeCCCCHHHHHHHHHHhhCCCC-CEEEecccCcCCcCCCCc--cEEE
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHS-AICIHGDKTQQDRDYVLNDFRQGKA-PILVATDVAARGLDVEDV--NTVN 179 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~-~iLv~T~~~~~Gldi~~v--~~VI 179 (233)
...++++||+++-+..+.+.+.+...... ....+|..+ +...++.|+.+.- .++|+|..+++|+|+|+= .+||
T Consensus 477 ~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vv 553 (654)
T COG1199 477 ASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVV 553 (654)
T ss_pred hcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEE
Confidence 34449999999999999999999877652 444555443 4588888887765 899999999999999974 6788
Q ss_pred EecCCCC
Q psy14082 180 IGSLQLS 186 (233)
Q Consensus 180 ~~d~P~~ 186 (233)
...+|--
T Consensus 554 I~~lPfp 560 (654)
T COG1199 554 IVGLPFP 560 (654)
T ss_pred EEecCCC
Confidence 8888743
No 180
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.51 E-value=0.015 Score=52.35 Aligned_cols=75 Identities=11% Similarity=0.209 Sum_probs=62.7
Q ss_pred CCeEEEEecchhHHHHHHHHHhhC-CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEe
Q psy14082 106 AFKVIVFVETKKKVEDITRALRRE-RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIG 181 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~ 181 (233)
+.++++.++++.-+.++.+.|++. +.++..+||+++..+|.+.+.+.++|+.+|+|+|...- -..+++..+||.-
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal-f~p~~~l~lIIVD 100 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL-FLPFKNLGLIIVD 100 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH-cCcccCCCEEEEE
Confidence 458999999999999999999764 67889999999999999999999999999999996533 2446677777744
No 181
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.42 E-value=0.018 Score=42.78 Aligned_cols=67 Identities=16% Similarity=0.286 Sum_probs=47.9
Q ss_pred HHHHHHHHhhCCC------eeEEEeCCCCHHHHHHHHHHhhCCCC-CEEEecccCcCCcCCCC--ccEEEEecCCC
Q psy14082 119 VEDITRALRRERH------SAICIHGDKTQQDRDYVLNDFRQGKA-PILVATDVAARGLDVED--VNTVNIGSLQL 185 (233)
Q Consensus 119 ~~~l~~~L~~~~~------~~~~~~~~~~~~~r~~~~~~f~~g~~-~iLv~T~~~~~Gldi~~--v~~VI~~d~P~ 185 (233)
.+.+...+++.+. .-.++..+.+..+..++++.|+...- .||+++.-+++|+|+|+ ...||...+|-
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 4555566655443 22344445666667899999987643 69999988999999997 56899999884
No 182
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=96.33 E-value=0.013 Score=55.67 Aligned_cols=66 Identities=17% Similarity=0.263 Sum_probs=55.4
Q ss_pred HHhcCCCCeEEEEecchhHHHHHHHHHhhCC-----CeeEE-EeCCCCHHHHHHHHHHhhCCCCCEEEeccc
Q psy14082 100 EMAKNPAFKVIVFVETKKKVEDITRALRRER-----HSAIC-IHGDKTQQDRDYVLNDFRQGKAPILVATDV 165 (233)
Q Consensus 100 ~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~-----~~~~~-~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~ 165 (233)
.+....++++++.++|.--+.+.++.|++.. ..+.+ +||.|+.+++.+++++|.+|+.+|||+|+.
T Consensus 119 l~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 119 LYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 3445677999999999999999999987652 33333 999999999999999999999999999954
No 183
>KOG1802|consensus
Probab=96.28 E-value=0.0096 Score=54.15 Aligned_cols=64 Identities=13% Similarity=0.080 Sum_probs=49.6
Q ss_pred ceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCC
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPK 82 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~ 82 (233)
=.++|+|+|+|||++-+- ++.++.++ ....+|+.+|+.--++|+.+.+.+- ++++..+......
T Consensus 427 lsLIQGPPGTGKTvtsa~-IVyhl~~~------~~~~VLvcApSNiAVDqLaeKIh~t--gLKVvRl~aksRE 490 (935)
T KOG1802|consen 427 LSLIQGPPGTGKTVTSAT-IVYHLARQ------HAGPVLVCAPSNIAVDQLAEKIHKT--GLKVVRLCAKSRE 490 (935)
T ss_pred ceeeecCCCCCceehhHH-HHHHHHHh------cCCceEEEcccchhHHHHHHHHHhc--CceEeeeehhhhh
Confidence 368899999999998544 55555543 2456899999999999999999887 6888877766443
No 184
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=96.21 E-value=0.025 Score=54.55 Aligned_cols=75 Identities=15% Similarity=0.261 Sum_probs=64.1
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-cCcCCcCCCCccEEE
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-VAARGLDVEDVNTVN 179 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-~~~~Gldi~~v~~VI 179 (233)
.+.+++|.++|+.-+++.++.+++. ++++..++|..+.+++...++.+++|+.+|+|+|. .+.+.+.+.++.++|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 4579999999999999998887653 67888999999999999999999999999999997 344567777888776
No 185
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=96.13 E-value=0.033 Score=51.33 Aligned_cols=84 Identities=17% Similarity=0.206 Sum_probs=64.8
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCC----CCCEEEecccCcCCcCC------
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQG----KAPILVATDVAARGLDV------ 172 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g----~~~iLv~T~~~~~Gldi------ 172 (233)
...+++++|.+.+....+.+++.|...--....+.|+.+ .+...+++|+.. +..||++|+.+-+|+|+
T Consensus 467 ~~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~ 544 (636)
T TIGR03117 467 RKAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVS 544 (636)
T ss_pred HHcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCC
Confidence 345568999999999999999999654324456677543 356788888874 68899999999999999
Q ss_pred ----CCccEEEEecCCCCcc
Q psy14082 173 ----EDVNTVNIGSLQLSAN 188 (233)
Q Consensus 173 ----~~v~~VI~~d~P~~~~ 188 (233)
..+.+||+.-+|..+.
T Consensus 545 p~~G~~Ls~ViI~kLPF~~~ 564 (636)
T TIGR03117 545 PDKDNLLTDLIITCAPFGLN 564 (636)
T ss_pred CCCCCcccEEEEEeCCCCcC
Confidence 2488999988885543
No 186
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=96.11 E-value=0.038 Score=50.57 Aligned_cols=88 Identities=15% Similarity=0.251 Sum_probs=71.9
Q ss_pred HHhcCCCCeEEEEecchhHHH----HHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc-CcCCcCCCC
Q psy14082 100 EMAKNPAFKVIVFVETKKKVE----DITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV-AARGLDVED 174 (233)
Q Consensus 100 ~~~~~~~~k~iIf~~~~~~~~----~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~-~~~Gldi~~ 174 (233)
+..-..+.++.+.++|.--++ .+.+.|...|+.+..+.|.+..+.|.+++....+|+.+++|.|.+ +...+++.+
T Consensus 305 l~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~ 384 (677)
T COG1200 305 LAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHN 384 (677)
T ss_pred HHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecc
Confidence 445568889999999975555 455555567999999999999999999999999999999999986 456788888
Q ss_pred ccEEEEecCCCCcccccc
Q psy14082 175 VNTVNIGSLQLSANHNIS 192 (233)
Q Consensus 175 v~~VI~~d~P~~~~~~i~ 192 (233)
.-+|| .+..||.|
T Consensus 385 LgLVI-----iDEQHRFG 397 (677)
T COG1200 385 LGLVI-----IDEQHRFG 397 (677)
T ss_pred eeEEE-----Eecccccc
Confidence 88888 45566664
No 187
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.07 E-value=0.02 Score=42.53 Aligned_cols=67 Identities=15% Similarity=0.256 Sum_probs=44.5
Q ss_pred HHHHHHHHhhCCC---eeEEEeCCCCHHHHHHHHHHhhCCCC---CEEEeccc--CcCCcCCCC--ccEEEEecCCC
Q psy14082 119 VEDITRALRRERH---SAICIHGDKTQQDRDYVLNDFRQGKA---PILVATDV--AARGLDVED--VNTVNIGSLQL 185 (233)
Q Consensus 119 ~~~l~~~L~~~~~---~~~~~~~~~~~~~r~~~~~~f~~g~~---~iLv~T~~--~~~Gldi~~--v~~VI~~d~P~ 185 (233)
.+.+.+.+.+.+. ...++.-+....+..++++.|++... .||+++.- +++|+|+|+ ..+||..++|-
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 4556666665543 12223322333355788999987543 58888876 899999997 57899999884
No 188
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.02 E-value=0.031 Score=52.58 Aligned_cols=82 Identities=20% Similarity=0.316 Sum_probs=62.0
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhhCCC-------eeEEEeCCCCHHHHHHHHHHhhC----CCCCEEEec--ccCcCC
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRRERH-------SAICIHGDKTQQDRDYVLNDFRQ----GKAPILVAT--DVAARG 169 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~----g~~~iLv~T--~~~~~G 169 (233)
..-.+.++||+++-...+.+.+.+.+.+. +..+.-+ -...++..++++|+. |..-||+|+ ..+++|
T Consensus 519 ~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEG 597 (705)
T TIGR00604 519 KIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEG 597 (705)
T ss_pred hcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCc
Confidence 33457899999999999999998876542 2223322 222577889999964 445699998 889999
Q ss_pred cCCCC--ccEEEEecCCC
Q psy14082 170 LDVED--VNTVNIGSLQL 185 (233)
Q Consensus 170 ldi~~--v~~VI~~d~P~ 185 (233)
+|+++ ...||..++|-
T Consensus 598 IDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 598 IDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred cccCCCCCcEEEEEccCC
Confidence 99997 68899999996
No 189
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=96.01 E-value=0.0093 Score=51.81 Aligned_cols=48 Identities=10% Similarity=0.071 Sum_probs=39.0
Q ss_pred ceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
++++.|+||||||.++++|-+... +..++|.=|--|+...+....+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~----------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW----------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC----------CCCEEEEccchhHHHHHHHHHHHc
Confidence 578999999999999999876532 246889999999998887776655
No 190
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.01 E-value=0.017 Score=45.30 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=34.7
Q ss_pred ceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVA 64 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~ 64 (233)
-.+++++.|||||.+ +-.+...+.. .+.++++++||...+....+..
T Consensus 20 ~~~l~G~aGtGKT~~-l~~~~~~~~~-------~g~~v~~~apT~~Aa~~L~~~~ 66 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTL-LKALAEALEA-------AGKRVIGLAPTNKAAKELREKT 66 (196)
T ss_dssp EEEEEESTTSTHHHH-HHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHH-HHHHHHHHHh-------CCCeEEEECCcHHHHHHHHHhh
Confidence 477889999999965 4455555543 3678999999999999877774
No 191
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=95.96 E-value=0.12 Score=49.81 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=61.6
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCC--------C
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVE--------D 174 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~--------~ 174 (233)
...+.++||-+.+.+..+.+...|...|+...+++.....++ .+++.. ......|-|||++++||-|+. +
T Consensus 625 ~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~E-AeIVA~-AG~~GaVTIATNMAGRGTDIkLg~~V~e~G 702 (1112)
T PRK12901 625 SEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKE-AEIVAE-AGQPGTVTIATNMAGRGTDIKLSPEVKAAG 702 (1112)
T ss_pred HHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhH-HHHHHh-cCCCCcEEEeccCcCCCcCcccchhhHHcC
Confidence 458899999999999999999999999999888877643333 333332 222346889999999999986 1
Q ss_pred ccEEEEecCCCCc
Q psy14082 175 VNTVNIGSLQLSA 187 (233)
Q Consensus 175 v~~VI~~d~P~~~ 187 (233)
==+||--..|.|.
T Consensus 703 GL~VIgTerheSr 715 (1112)
T PRK12901 703 GLAIIGTERHESR 715 (1112)
T ss_pred CCEEEEccCCCcH
Confidence 2367766666654
No 192
>KOG0339|consensus
Probab=95.94 E-value=0.082 Score=46.95 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=53.2
Q ss_pred hhhhchH-HHhcCCCCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc
Q psy14082 93 FVFNCQY-EMAKNPAFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD 164 (233)
Q Consensus 93 ~~~~~~~-~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~ 164 (233)
++.+.++ .+....+.-.+|.|+|++.+.++....++. |+.++++||+++..++...++ -...++|||+
T Consensus 282 ~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTP 354 (731)
T KOG0339|consen 282 IVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATP 354 (731)
T ss_pred HHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEech
Confidence 4444443 355567777899999999999888777654 789999999999999888777 3578999993
No 193
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.94 E-value=0.015 Score=49.97 Aligned_cols=51 Identities=12% Similarity=0.017 Sum_probs=39.8
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
+++.+.+|||||+. ++-++..+... ..+..++++++...|...+.+.+..-
T Consensus 4 ~~I~G~aGTGKTvl-a~~l~~~l~~~-----~~~~~~~~l~~n~~l~~~l~~~l~~~ 54 (352)
T PF09848_consen 4 ILITGGAGTGKTVL-ALNLAKELQNS-----EEGKKVLYLCGNHPLRNKLREQLAKK 54 (352)
T ss_pred EEEEecCCcCHHHH-HHHHHHHhhcc-----ccCCceEEEEecchHHHHHHHHHhhh
Confidence 68899999999988 56566666211 34678999999999999888888654
No 194
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=95.94 E-value=0.012 Score=52.52 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=40.2
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
.++++.|+||||||..|++|.+-.. ++ .++|.=|-.||...+....++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~---------~~-s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY---------PG-SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc---------cC-CEEEEECCCcHHHHHHHHHHHC
Confidence 4699999999999999999987422 12 5888889999999888877776
No 195
>PRK10689 transcription-repair coupling factor; Provisional
Probab=95.93 E-value=0.041 Score=54.28 Aligned_cols=76 Identities=16% Similarity=0.188 Sum_probs=63.5
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc-CcCCcCCCCccEE
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV-AARGLDVEDVNTV 178 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~-~~~Gldi~~v~~V 178 (233)
..+.+++|.++|+..+.+.++.+++. ++++..++|..+.+++.++++..++|..+|+|+|.. +...+++.++.++
T Consensus 647 ~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lL 726 (1147)
T PRK10689 647 ENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLL 726 (1147)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEE
Confidence 35789999999999999998888753 467888999999999999999999999999999963 4445666777776
Q ss_pred E
Q psy14082 179 N 179 (233)
Q Consensus 179 I 179 (233)
|
T Consensus 727 V 727 (1147)
T PRK10689 727 I 727 (1147)
T ss_pred E
Confidence 6
No 196
>KOG0335|consensus
Probab=95.70 E-value=0.037 Score=48.82 Aligned_cols=123 Identities=23% Similarity=0.291 Sum_probs=86.8
Q ss_pred CCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEec------------------
Q psy14082 106 AFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVAT------------------ 163 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T------------------ 163 (233)
..+.+|..+|++-+.++++.-++. +.++...+|+.+.... ..+....++|+|||
T Consensus 152 ~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q----~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~ 227 (482)
T KOG0335|consen 152 YPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQ----LRFIKRGCDILVATPGRLKDLIERGKISLDNC 227 (482)
T ss_pred CCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhh----hhhhccCccEEEecCchhhhhhhcceeehhhC
Confidence 578999999999999999998765 4677888888443332 33445679999999
Q ss_pred -----ccCcCCcC----CCCccEEEEec-CCC---------------Cc---------cccc--------------ceee
Q psy14082 164 -----DVAARGLD----VEDVNTVNIGS-LQL---------------SA---------NHNI--------------SQVI 195 (233)
Q Consensus 164 -----~~~~~Gld----i~~v~~VI~~d-~P~---------------~~---------~~~i--------------~~~~ 195 (233)
|.+.|.+| .|++++++.+. +|. +. +.|+ -+.+
T Consensus 228 k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i 307 (482)
T KOG0335|consen 228 KFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKI 307 (482)
T ss_pred cEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEe
Confidence 44555566 45666655543 331 11 1133 4888
Q ss_pred EEeecchHHHHHHHHHHhhc-----C-----cccccccchhhHhhhc
Q psy14082 196 EVVQDYEKEKRLFSLIRELG-----K-----YTLITQESSSTLSEMV 232 (233)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~~~-----~-----~~~~~~~~~~~~~~l~ 232 (233)
.++.+.++...+++++.... + ..++|.|.++.+.+++
T Consensus 308 ~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~ 354 (482)
T KOG0335|consen 308 LFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELA 354 (482)
T ss_pred eeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHH
Confidence 89998899999999887532 2 5788999998887764
No 197
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=95.65 E-value=0.048 Score=44.91 Aligned_cols=63 Identities=17% Similarity=0.087 Sum_probs=51.4
Q ss_pred eEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEcCCCC
Q psy14082 12 FSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFGGTPK 82 (233)
Q Consensus 12 i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~gg~~~ 82 (233)
+++..||=|||++..+|++-..+. |..+=|++.+.-||..=++.+..+ +.++++.+..++.+.
T Consensus 94 laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~ 158 (266)
T PF07517_consen 94 LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSDMSS 158 (266)
T ss_dssp EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETTTEH
T ss_pred eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccccCH
Confidence 899999999999999888776653 556888999999999999999998 668999999988653
No 198
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=95.65 E-value=0.02 Score=52.57 Aligned_cols=50 Identities=6% Similarity=-0.136 Sum_probs=42.3
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
..++++.||||||||..|++|-+... +..++|+=|--|+...+....++.
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~~----------~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLFW----------EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHhC----------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 45799999999999999999998754 234888999999999988888776
No 199
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=95.51 E-value=0.11 Score=50.43 Aligned_cols=89 Identities=12% Similarity=0.190 Sum_probs=74.0
Q ss_pred HHhcCCCCeEEEEecchhHHHHHHHHHhh----CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-cCcCCcCCCC
Q psy14082 100 EMAKNPAFKVIVFVETKKKVEDITRALRR----ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-VAARGLDVED 174 (233)
Q Consensus 100 ~~~~~~~~k~iIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-~~~~Gldi~~ 174 (233)
...-..++++.|.++|.--+++-++.+++ ..+++..+..-.+.+++.++++..++|+++|+|.|. .++.++-+.+
T Consensus 637 FkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~Fkd 716 (1139)
T COG1197 637 FKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKD 716 (1139)
T ss_pred HHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEec
Confidence 34455789999999998777766666654 467888999999999999999999999999999996 5778888999
Q ss_pred ccEEEEecCCCCcccccce
Q psy14082 175 VNTVNIGSLQLSANHNISQ 193 (233)
Q Consensus 175 v~~VI~~d~P~~~~~~i~~ 193 (233)
.-++| -+.+|+.|.
T Consensus 717 LGLlI-----IDEEqRFGV 730 (1139)
T COG1197 717 LGLLI-----IDEEQRFGV 730 (1139)
T ss_pred CCeEE-----EechhhcCc
Confidence 99888 467777774
No 200
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.45 E-value=0.054 Score=50.60 Aligned_cols=102 Identities=16% Similarity=0.218 Sum_probs=78.0
Q ss_pred CCcEEEEEcCCCCC-CeeEEeccchhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhC-CCeeEEEeCCCCHHHHHH
Q psy14082 70 ALRNICIFGGTPKG-PQDCLPLHRFVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRE-RHSAICIHGDKTQQDRDY 147 (233)
Q Consensus 70 ~~~~~~~~gg~~~~-~~~lv~l~r~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~ 147 (233)
+....++.|-+... .. -++..+.+.+. .++++|+.++.......+.+.++.+ |.++.++|+++++.+|.+
T Consensus 216 ~~~~~Ll~GvTGSGKTE------vYl~~i~~~L~--~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~ 287 (730)
T COG1198 216 GFAPFLLDGVTGSGKTE------VYLEAIAKVLA--QGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYR 287 (730)
T ss_pred cccceeEeCCCCCcHHH------HHHHHHHHHHH--cCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHH
Confidence 35666666654432 22 26666766554 5689999999999999999999754 889999999999999999
Q ss_pred HHHHhhCCCCCEEEecccCcCCcCCCCccEEEE
Q psy14082 148 VLNDFRQGKAPILVATDVAARGLDVEDVNTVNI 180 (233)
Q Consensus 148 ~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~ 180 (233)
.+.+.++|+.+|+|.|..+- -.=+++..+||.
T Consensus 288 ~W~~~~~G~~~vVIGtRSAl-F~Pf~~LGLIIv 319 (730)
T COG1198 288 VWRRARRGEARVVIGTRSAL-FLPFKNLGLIIV 319 (730)
T ss_pred HHHHHhcCCceEEEEechhh-cCchhhccEEEE
Confidence 99999999999999996533 233556666663
No 201
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=95.42 E-value=0.057 Score=48.86 Aligned_cols=67 Identities=25% Similarity=0.381 Sum_probs=53.4
Q ss_pred EEEEecchhHHHHHHHHHhhC-----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----cCcCC-cCCCCccE
Q psy14082 109 VIVFVETKKKVEDITRALRRE-----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----VAARG-LDVEDVNT 177 (233)
Q Consensus 109 ~iIf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~~G-ldi~~v~~ 177 (233)
+||+++|++.+.++++.+... ++.+..++|+++...+...++. | .+|+|+|+ .+.++ +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 999999999999999988753 5678999999998887755554 6 99999993 45555 67667776
Q ss_pred EE
Q psy14082 178 VN 179 (233)
Q Consensus 178 VI 179 (233)
+|
T Consensus 178 lV 179 (513)
T COG0513 178 LV 179 (513)
T ss_pred EE
Confidence 65
No 202
>PRK14701 reverse gyrase; Provisional
Probab=95.38 E-value=0.072 Score=54.28 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=54.4
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhC------CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRE------RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV 165 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~ 165 (233)
.+.+++|.++|+.-+.++.+.++.. +..+..+||+++.+++.+.++.+++|+.+|||+|+.
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 5679999999999999999999863 467788999999999999999999999999999963
No 203
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=95.35 E-value=0.14 Score=48.18 Aligned_cols=70 Identities=19% Similarity=0.249 Sum_probs=54.5
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCC
Q psy14082 102 AKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVE 173 (233)
Q Consensus 102 ~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~ 173 (233)
....+.|+||-+.+.+..+.+.+.|.+.|++..++...-. .++.-+-+.....--+-|||++++||-|+.
T Consensus 425 ~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG~~gaVTiATNMAGRGTDIk 494 (822)
T COG0653 425 RHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAGQPGAVTIATNMAGRGTDIK 494 (822)
T ss_pred HHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcCCCCccccccccccCCcccc
Confidence 5568899999999999999999999999999888877644 333333333322334779999999999974
No 204
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=95.24 E-value=0.049 Score=52.85 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=43.7
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
++--+++=-||||||++ ++=+.+.+.+. ...|.+++++-+++|-.|+.+.+..+
T Consensus 273 ~~~G~IWHtqGSGKTlT-m~~~A~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~ 326 (962)
T COG0610 273 GKGGYIWHTQGSGKTLT-MFKLARLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSF 326 (962)
T ss_pred CCceEEEeecCCchHHH-HHHHHHHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHH
Confidence 45577788899999999 44345555544 56789999999999999999999998
No 205
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.24 E-value=0.019 Score=49.09 Aligned_cols=42 Identities=10% Similarity=-0.140 Sum_probs=30.9
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHH
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELA 57 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~ 57 (233)
.+.++++.++||||||.. +-.++..+- ...+.+.+=.+.||.
T Consensus 161 ~~~nilI~G~tGSGKTTl-l~aLl~~i~--------~~~rivtiEd~~El~ 202 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTM-SKTLISAIP--------PQERLITIEDTLELV 202 (344)
T ss_pred cCCeEEEECCCCccHHHH-HHHHHcccC--------CCCCEEEECCCcccc
Confidence 578899999999999954 555665542 244677788888874
No 206
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=95.22 E-value=0.061 Score=43.11 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=44.4
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
.+|.+.+.|.-.|.|||-+ ++|++..++.+ +..-+-++||. .|..|..+.++.-
T Consensus 39 ~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd------g~~LvrviVpk-~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 39 PSGKNSVMQLNMGEGKTSV-IVPMLALALAD------GSRLVRVIVPK-ALLEQMRQMLRSR 92 (229)
T ss_pred CCCCCeEeeecccCCccch-HHHHHHHHHcC------CCcEEEEEcCH-HHHHHHHHHHHHH
Confidence 4788999999999999977 89999988864 34456667774 7999999999887
No 207
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.22 E-value=0.063 Score=48.64 Aligned_cols=59 Identities=17% Similarity=0.014 Sum_probs=43.2
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
.+.-+++|++.|||||.+.+--+.-.+..-+.... +..+||+.|.+-+..=+.+.+=.+
T Consensus 225 k~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~--~k~vlvl~PN~vFleYis~VLPeL 283 (747)
T COG3973 225 KNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQ--AKPVLVLGPNRVFLEYISRVLPEL 283 (747)
T ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhccccccc--cCceEEEcCcHHHHHHHHHhchhh
Confidence 45568999999999998866555444444332222 333999999999999998888777
No 208
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=95.16 E-value=0.078 Score=50.64 Aligned_cols=82 Identities=23% Similarity=0.292 Sum_probs=62.1
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCC-CCEEEecccCcCCcCCCCc------
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGK-APILVATDVAARGLDVEDV------ 175 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~iLv~T~~~~~Gldi~~v------ 175 (233)
...+.++||-|.+....+.++..|.+.|+...+++..-..++ .+++.. .|+ ..|-|||++++||.|+.--
T Consensus 565 ~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~E-a~iia~--AG~~g~VTIATNmAGRGTDIkl~~~v~~~ 641 (970)
T PRK12899 565 HRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQE-AEIIAG--AGKLGAVTVATNMAGRGTDIKLDEEAVAV 641 (970)
T ss_pred HhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhH-HHHHHh--cCCCCcEEEeeccccCCcccccCchHHhc
Confidence 457789999999999999999999999999999988633222 333332 344 5689999999999998422
Q ss_pred --cEEEEecCCCCc
Q psy14082 176 --NTVNIGSLQLSA 187 (233)
Q Consensus 176 --~~VI~~d~P~~~ 187 (233)
=+||.-..|.|.
T Consensus 642 GGLhVIgTer~es~ 655 (970)
T PRK12899 642 GGLYVIGTSRHQSR 655 (970)
T ss_pred CCcEEEeeccCchH
Confidence 167777777665
No 209
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=95.13 E-value=0.075 Score=50.51 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=21.9
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhh
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRR 128 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~ 128 (233)
.+.+++||||+.+.+|..+.+.|..
T Consensus 293 ~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 293 QGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred CCCCcEEEEEcchHHHHHHHHHHHh
Confidence 4567899999999999999999855
No 210
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=95.09 E-value=0.042 Score=51.12 Aligned_cols=49 Identities=10% Similarity=0.026 Sum_probs=39.5
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
.++++.||||||||..|++|-+-.. ...++|+=|--|+...+....++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~----------~gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF----------KGSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC----------CCCEEEEeCCchHHHHHHHHHHhC
Confidence 4899999999999999999987643 225888889989888877666655
No 211
>KOG0952|consensus
Probab=95.05 E-value=0.024 Score=54.02 Aligned_cols=70 Identities=11% Similarity=0.009 Sum_probs=57.8
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEcCCCCC
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFGGTPKG 83 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~gg~~~~ 83 (233)
..+.++.+|||+|||++|.+.+...+.. .++.++++++|-..|+..-.+.+.+. .+++++.-..|....+
T Consensus 943 d~~~~~g~ptgsgkt~~ae~a~~~~~~~------~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd 1014 (1230)
T KOG0952|consen 943 DLNFLLGAPTGSGKTVVAELAIFRALSY------YPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPD 1014 (1230)
T ss_pred chhhhhcCCccCcchhHHHHHHHHHhcc------CCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCC
Confidence 4567889999999999999988876654 35678999999999999988888876 4578888888887654
No 212
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.04 E-value=0.019 Score=47.66 Aligned_cols=25 Identities=4% Similarity=-0.177 Sum_probs=22.0
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhcc
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISHQ 36 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~~ 36 (233)
++|.+|||||||.+ +.+++..+.++
T Consensus 128 ILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 128 ILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred EEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 78999999999977 77899998875
No 213
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.01 E-value=0.049 Score=44.05 Aligned_cols=54 Identities=9% Similarity=-0.154 Sum_probs=39.1
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
++.|.-+++.+++|+|||....--+.+.+ .++..+++++ +.|-..|+.+.+..+
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~--------~~ge~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGL--------QMGEPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHH--------HcCCcEEEEE-eeCCHHHHHHHHHHh
Confidence 35788899999999999975433334444 2356688777 567788888888877
No 214
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.00 E-value=0.036 Score=46.98 Aligned_cols=45 Identities=11% Similarity=-0.079 Sum_probs=32.3
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHH
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELA 57 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~ 57 (233)
.+.++++.++||||||.. +-.++..+... ..+.+.+.+=.+.||.
T Consensus 143 ~~~nilI~G~tGSGKTTl-l~aL~~~i~~~-----~~~~rivtiEd~~El~ 187 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTL-ANAVIAEIVAS-----APEDRLVILEDTAEIQ 187 (323)
T ss_pred cCCeEEEECCCCCCHHHH-HHHHHHHHhcC-----CCCceEEEecCCcccc
Confidence 467899999999999954 66666666432 1245778888888874
No 215
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.91 E-value=0.05 Score=45.70 Aligned_cols=45 Identities=11% Similarity=-0.030 Sum_probs=32.6
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHH
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELA 57 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~ 57 (233)
.+..+++.++||||||.. +-.++..+... ....+++.+=.+.|+.
T Consensus 131 ~~~~ilI~G~tGSGKTTl-l~al~~~i~~~-----~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTL-ANALLAEIAKN-----DPTDRVVIIEDTRELQ 175 (299)
T ss_pred cCCeEEEECCCCCCHHHH-HHHHHHHhhcc-----CCCceEEEECCchhhc
Confidence 467899999999999954 66666655432 1245788888888874
No 216
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.88 E-value=0.035 Score=47.01 Aligned_cols=46 Identities=7% Similarity=-0.090 Sum_probs=33.3
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELA 57 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~ 57 (233)
..+..+++.++|||||| +++-.++..+... .+..+.+++-.+.||.
T Consensus 146 ~~~~~ilI~G~tGSGKT-Tll~aL~~~~~~~-----~~~~rivtIEd~~El~ 191 (319)
T PRK13894 146 RAHRNILVIGGTGSGKT-TLVNAIINEMVIQ-----DPTERVFIIEDTGEIQ 191 (319)
T ss_pred HcCCeEEEECCCCCCHH-HHHHHHHHhhhhc-----CCCceEEEEcCCCccc
Confidence 35778999999999999 5566676655322 2345788888888873
No 217
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.79 E-value=0.045 Score=42.33 Aligned_cols=48 Identities=13% Similarity=0.029 Sum_probs=31.2
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQT 62 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~ 62 (233)
-.+..++..+++|+|||.. +..+...+... +..+++ ++..+|..++..
T Consensus 45 ~~~~~l~l~G~~G~GKThL-a~ai~~~~~~~-------g~~v~f-~~~~~L~~~l~~ 92 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHL-AVAIANEAIRK-------GYSVLF-ITASDLLDELKQ 92 (178)
T ss_dssp SC--EEEEEESTTSSHHHH-HHHHHHHHHHT-------T--EEE-EEHHHHHHHHHC
T ss_pred ccCeEEEEEhhHhHHHHHH-HHHHHHHhccC-------CcceeE-eecCceeccccc
Confidence 4578899999999999987 55566666543 445555 566677776644
No 218
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=94.72 E-value=0.061 Score=49.85 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=39.6
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
..++++.|+||||||..+++|-+-.. +..++++=|-.|+...+....++.
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~~----------~gS~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALKW----------GGPLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhcC----------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 46899999999999999999976422 234777889999988877766655
No 219
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=94.65 E-value=0.65 Score=38.44 Aligned_cols=31 Identities=10% Similarity=-0.105 Sum_probs=22.6
Q ss_pred CCCCCCCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
-++-.|+-..+.++.|+|||.. +.-++....
T Consensus 64 ~pig~GQr~~If~~~G~GKTtL-a~~i~~~i~ 94 (274)
T cd01133 64 APYAKGGKIGLFGGAGVGKTVL-IMELINNIA 94 (274)
T ss_pred CCcccCCEEEEecCCCCChhHH-HHHHHHHHH
Confidence 3567889999999999999975 343444443
No 220
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=94.65 E-value=0.039 Score=48.45 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=35.3
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHH
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQI 60 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~ 60 (233)
||.-...+++++.++||||||.. +..++..+... +.+++|+=|..|+....
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~-------~~~~vi~D~kg~~~~~~ 86 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRAR-------GDRAIIYDPNGGFVSKF 86 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHhc-------CCCEEEEeCCcchhHhh
Confidence 34455678999999999999975 55566655532 44677777777765443
No 221
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.62 E-value=0.043 Score=46.79 Aligned_cols=43 Identities=12% Similarity=-0.103 Sum_probs=31.1
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHH
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQ 58 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~ 58 (233)
.+.++++.++||||||.. +-.++..+- ...+++.+=-+.||..
T Consensus 159 ~~~nili~G~tgSGKTTl-l~aL~~~ip--------~~~ri~tiEd~~El~l 201 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTF-TNAALREIP--------AIERLITVEDAREIVL 201 (332)
T ss_pred cCCcEEEECCCCCCHHHH-HHHHHhhCC--------CCCeEEEecCCCcccc
Confidence 578999999999999944 666666552 2346777767777754
No 222
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.60 E-value=0.065 Score=50.10 Aligned_cols=55 Identities=13% Similarity=0.007 Sum_probs=41.4
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
..+++.|..|||||.+ ++.-+..+..... ..+.++|+++.|+..|..+.+++...
T Consensus 210 ~~~lV~agaGSGKT~v-l~~r~ayLl~~~~---~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 210 DSLLVLAGAGSGKTSV-LVARAGWLLARGQ---AQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCeEEEEeCCCCHHHH-HHHHHHHHHHhCC---CCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 4588999999999988 4444444443211 23458999999999999999998876
No 223
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.60 E-value=0.064 Score=41.29 Aligned_cols=48 Identities=10% Similarity=-0.067 Sum_probs=33.0
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
+++.+++|+|||.. ++-++..... .+..+++++ +.|-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l-~~~~~~~~~~-------~g~~v~~~s-~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTF-ALQFLYAGLA-------RGEPGLYVT-LEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHH-HHHHHHHHHH-------CCCcEEEEE-CCCCHHHHHHHHHHc
Confidence 57899999999965 4333333332 356677775 457788888888777
No 224
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=94.60 E-value=0.36 Score=37.58 Aligned_cols=72 Identities=19% Similarity=0.233 Sum_probs=52.7
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc-----CcC-CcCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV-----AAR-GLDVE 173 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~-----~~~-Gldi~ 173 (233)
..+.+++|.++++..+.+....++.. ++.+..++|+.+..+....++ +..+|+|+|.. +.+ -.+++
T Consensus 67 ~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~ 142 (203)
T cd00268 67 KDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLS 142 (203)
T ss_pred cCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChh
Confidence 35679999999999999887777554 678888999988766554433 56799999942 222 25667
Q ss_pred CccEEE
Q psy14082 174 DVNTVN 179 (233)
Q Consensus 174 ~v~~VI 179 (233)
+++++|
T Consensus 143 ~l~~lI 148 (203)
T cd00268 143 KVKYLV 148 (203)
T ss_pred hCCEEE
Confidence 777766
No 225
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.55 E-value=0.071 Score=49.86 Aligned_cols=56 Identities=5% Similarity=-0.112 Sum_probs=41.6
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
.-.+++.|.+|||||.+ +.--+.++..... -...++|+|+.|+..|..+.+++..+
T Consensus 15 ~g~~lV~AgpGSGKT~v-L~~Ria~Li~~~~---v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 15 TGPCLVLAGAGSGKTRV-ITNKIAHLIRGCG---YQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCEEEEecCCCCHHHH-HHHHHHHHHHhcC---CCHHHeeeEechHHHHHHHHHHHHHH
Confidence 34678999999999988 4444444443211 12457999999999999999999876
No 226
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=94.50 E-value=0.039 Score=48.03 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=36.2
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQT 62 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~ 62 (233)
||.-...+++++.+.||||||.+ +-+++..+... +-+++|.=|.-+.....++
T Consensus 9 l~~~~e~~~~li~G~~GsGKT~~-i~~ll~~~~~~-------g~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 9 LPKDSENRHILIIGATGSGKTQA-IRHLLDQIRAR-------GDRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp E-GGGGGG-EEEEE-TTSSHHHH-HHHHHHHHHHT-------T-EEEEEEETTHHHHHH--
T ss_pred cccchhhCcEEEECCCCCCHHHH-HHHHHHHHHHc-------CCEEEEEECCchHHHHhcC
Confidence 35556788999999999999974 67788777653 5678888888777665444
No 227
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=94.33 E-value=0.088 Score=48.58 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=38.4
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
..++++.||||||||..+++|-+-.. +..++++=|-.|+...+...-++.
T Consensus 211 ~~H~lv~ApTgsGKgvg~VIPnLL~~----------~gS~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 211 STHMIFFAGSGGFKTTSVVVPTALKY----------GGPLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred CceEEEEeCCCCCccceeehhhhhcC----------CCCEEEEEChHHHHHHHHHHHHHc
Confidence 36899999999999999999975422 234788888888887777655544
No 228
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.24 E-value=0.079 Score=41.89 Aligned_cols=41 Identities=7% Similarity=-0.141 Sum_probs=26.5
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHH
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRE 55 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~Ptre 55 (233)
.-+++.+|.|||||+..+...++.+... .--+.+|.-|..+
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~ 60 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVE 60 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCC
Confidence 4588999999999999888888777652 3446677667643
No 229
>KOG0333|consensus
Probab=94.21 E-value=0.61 Score=41.81 Aligned_cols=128 Identities=18% Similarity=0.259 Sum_probs=87.7
Q ss_pred HHhcCCCCeEEEEecchhHHHHHHHHHhh----CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEec------------
Q psy14082 100 EMAKNPAFKVIVFVETKKKVEDITRALRR----ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVAT------------ 163 (233)
Q Consensus 100 ~~~~~~~~k~iIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T------------ 163 (233)
......++..+|..+|+..++.+.+.-.+ .|++++.+-|+.+.+++-.-+.. .+.|+|+|
T Consensus 316 ~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~----gceiviatPgrLid~Lenr~ 391 (673)
T KOG0333|consen 316 LENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSM----GCEIVIATPGRLIDSLENRY 391 (673)
T ss_pred hhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhc----cceeeecCchHHHHHHHHHH
Confidence 34567888999999999999888776544 47899999999998886544443 47888888
Q ss_pred -----------ccCcCCcCCC---CccEEEEecCCCC-------------------------------------------
Q psy14082 164 -----------DVAARGLDVE---DVNTVNIGSLQLS------------------------------------------- 186 (233)
Q Consensus 164 -----------~~~~~Gldi~---~v~~VI~~d~P~~------------------------------------------- 186 (233)
|.++|.+|.. +|.-++- -+|.+
T Consensus 392 lvl~qctyvvldeadrmiDmgfE~dv~~iL~-~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verla 470 (673)
T KOG0333|consen 392 LVLNQCTYVVLDEADRMIDMGFEPDVQKILE-QMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLA 470 (673)
T ss_pred HHhccCceEeccchhhhhcccccHHHHHHHH-hCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHH
Confidence 3334444421 1111110 11211
Q ss_pred -----------------cccccceeeEEeecchHHHHHHHHHHhh-cCcccccccchhhHhhhc
Q psy14082 187 -----------------ANHNISQVIEVVQDYEKEKRLFSLIREL-GKYTLITQESSSTLSEMV 232 (233)
Q Consensus 187 -----------------~~~~i~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~l~ 232 (233)
+..++.+.+..+++.++..++.+.+++. ....++|...+++.+.||
T Consensus 471 r~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lA 534 (673)
T KOG0333|consen 471 RSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALA 534 (673)
T ss_pred HHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHH
Confidence 1122248888888888999999999997 466889999999988776
No 230
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=94.20 E-value=0.24 Score=44.13 Aligned_cols=71 Identities=20% Similarity=0.292 Sum_probs=54.1
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhC-----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----cCcC-CcCCC
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRE-----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----VAAR-GLDVE 173 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~~-Gldi~ 173 (233)
...+++|.++|++-+.++++.++.. +..+..++|+.+...+...++ ...+|+|+|+ .+.+ .+++.
T Consensus 71 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~ 146 (460)
T PRK11776 71 FRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLD 146 (460)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHH
Confidence 3458999999999999999888653 578889999999877655444 4679999993 3333 46777
Q ss_pred CccEEE
Q psy14082 174 DVNTVN 179 (233)
Q Consensus 174 ~v~~VI 179 (233)
+++++|
T Consensus 147 ~l~~lV 152 (460)
T PRK11776 147 ALNTLV 152 (460)
T ss_pred HCCEEE
Confidence 788776
No 231
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=94.20 E-value=0.15 Score=47.52 Aligned_cols=56 Identities=18% Similarity=0.008 Sum_probs=42.5
Q ss_pred ceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEE
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICI 76 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~ 76 (233)
..++.+.+|||||+..+ .++... +..+|||+|+.+.|.|+++.+..++++-.+..+
T Consensus 34 ~~ll~Gl~gs~ka~lia-~l~~~~----------~r~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f 89 (652)
T PRK05298 34 HQTLLGVTGSGKTFTMA-NVIARL----------QRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYF 89 (652)
T ss_pred cEEEEcCCCcHHHHHHH-HHHHHh----------CCCEEEEECCHHHHHHHHHHHHHhcCCCeEEEe
Confidence 45688999999998733 344322 235999999999999999999999665445555
No 232
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=94.14 E-value=0.16 Score=50.33 Aligned_cols=60 Identities=12% Similarity=0.187 Sum_probs=51.2
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhC----CCee---EEEeCCCCHHHHHHHHHHhhCCCCCEEEecc
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRE----RHSA---ICIHGDKTQQDRDYVLNDFRQGKAPILVATD 164 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~----~~~~---~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~ 164 (233)
.+.+++|.++|+.-+.++++.+.+. ++.+ ..+||+++..++...++.+++|..+|+|+|+
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp 186 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTT 186 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 4689999999999999998888754 3333 3589999999999999999999999999994
No 233
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=94.13 E-value=0.24 Score=46.04 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=53.0
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhC-----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----cCcCC-cCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRE-----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----VAARG-LDV 172 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~~G-ldi 172 (233)
....++||.++|+.-+.++++.+... ++.+..+||+.+.+.+...++ ...+|+|+|+ .+.++ +++
T Consensus 72 ~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~----~~~~IVVgTPgrl~d~l~r~~l~l 147 (629)
T PRK11634 72 LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR----QGPQIVVGTPGRLLDHLKRGTLDL 147 (629)
T ss_pred cCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhc----CCCCEEEECHHHHHHHHHcCCcch
Confidence 34568999999999999998887643 688899999988776655443 3578999993 33333 566
Q ss_pred CCccEEE
Q psy14082 173 EDVNTVN 179 (233)
Q Consensus 173 ~~v~~VI 179 (233)
.++.+||
T Consensus 148 ~~l~~lV 154 (629)
T PRK11634 148 SKLSGLV 154 (629)
T ss_pred hhceEEE
Confidence 6776655
No 234
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.12 E-value=0.11 Score=42.52 Aligned_cols=51 Identities=8% Similarity=0.052 Sum_probs=39.4
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKE 66 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~ 66 (233)
++..++..+++|+|||.. +.++...+.. .|. .++++++-||+.++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThL-a~Ai~~~l~~-------~g~-sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHL-AIAIGNELLK-------AGI-SVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred cCCcEEEECCCCCcHHHH-HHHHHHHHHH-------cCC-eEEEEEHHHHHHHHHHHHhc
Confidence 678899999999999988 5566666663 244 45567888999999887764
No 235
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=94.06 E-value=0.065 Score=49.81 Aligned_cols=50 Identities=12% Similarity=-0.057 Sum_probs=39.2
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
..++++.||||||||..+++|-+... ...++|+=|-.|+...+....++.
T Consensus 144 ~~hvLviApTrSGKgvg~VIPnLL~~----------~~S~VV~D~KGEl~~~Ta~~R~~~ 193 (663)
T PRK13876 144 PEHVLCFAPTRSGKGVGLVVPTLLTW----------PGSAIVHDIKGENWQLTAGFRARF 193 (663)
T ss_pred CceEEEEecCCCCcceeEehhhHHhC----------CCCEEEEeCcchHHHHHHHHHHhC
Confidence 46899999999999999999987644 224788888888877776665554
No 236
>KOG0925|consensus
Probab=94.05 E-value=1.3 Score=39.59 Aligned_cols=79 Identities=16% Similarity=0.300 Sum_probs=56.9
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHhhC---------CCeeEEEeCCCCHHHHHHHHHHhh---CC--CCCEEEecccCc
Q psy14082 102 AKNPAFKVIVFVETKKKVEDITRALRRE---------RHSAICIHGDKTQQDRDYVLNDFR---QG--KAPILVATDVAA 167 (233)
Q Consensus 102 ~~~~~~k~iIf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~---~g--~~~iLv~T~~~~ 167 (233)
.....+.+++|-...+..+...+.+... .+++..+| +.++..+++-.. +| ..+++|+|++++
T Consensus 249 ~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniae 324 (699)
T KOG0925|consen 249 MCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAE 324 (699)
T ss_pred hccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchh
Confidence 4456788999999999998888888632 25777788 223333332221 12 356999999999
Q ss_pred CCcCCCCccEEEEecCC
Q psy14082 168 RGLDVEDVNTVNIGSLQ 184 (233)
Q Consensus 168 ~Gldi~~v~~VI~~d~P 184 (233)
.-+-++++.+||.-++-
T Consensus 325 tsltidgiv~VIDpGf~ 341 (699)
T KOG0925|consen 325 TSLTIDGIVFVIDPGFS 341 (699)
T ss_pred eeeeeccEEEEecCchh
Confidence 99999999999987764
No 237
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.02 E-value=0.11 Score=49.00 Aligned_cols=56 Identities=5% Similarity=-0.063 Sum_probs=42.0
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
...+++.|..|||||.+ +.--+.++..... -+..++|+|+-|+..|..+.+++.++
T Consensus 22 ~g~~lV~AgaGSGKT~v-l~~Ria~Li~~~~---v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 22 LGNMLVLAGAGSGKTRV-LVHRIAWLMQVEN---ASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred CCCEEEEecCCCCHHHH-HHHHHHHHHHcCC---CChhHeEeeeccHHHHHHHHHHHHHH
Confidence 34688999999999988 4444444443211 12457999999999999999999987
No 238
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.99 E-value=0.078 Score=37.88 Aligned_cols=41 Identities=10% Similarity=-0.130 Sum_probs=26.7
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHH
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTREL 56 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL 56 (233)
+..+++.+|+|||||.. +.-++..+... +..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl-~~~l~~~~~~~-------~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTL-ARALARELGPP-------GGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHH-HHHHHhccCCC-------CCCEEEECCEEcc
Confidence 56789999999999976 44454444321 1347777766433
No 239
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.94 E-value=0.28 Score=43.86 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=54.5
Q ss_pred CCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc
Q psy14082 106 AFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD 164 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~ 164 (233)
.+.++|.++++.-++.....|...|+.+..++++.+..++..++...+.++.+++++|+
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TP 109 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTP 109 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 45789999999999999999999999999999999999999999999999999999985
No 240
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=93.88 E-value=0.063 Score=49.78 Aligned_cols=47 Identities=9% Similarity=-0.031 Sum_probs=37.2
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVA 64 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~ 64 (233)
..++++.||||||||..+++|-+... +..++|+=|-.|+...+....
T Consensus 175 ~~HvlviapTgSGKgvg~ViPnLL~~----------~~S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 175 PEHVLTYAPTRSGKGVGLVVPTLLSW----------GHSSVITDLKGELWALTAGWR 221 (636)
T ss_pred CceEEEEecCCCCCceEEEccchhhC----------CCCEEEEeCcHHHHHHHHHHH
Confidence 46799999999999999999988532 335888889999976665544
No 241
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=93.85 E-value=0.12 Score=48.73 Aligned_cols=56 Identities=5% Similarity=-0.094 Sum_probs=42.5
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
...+++.|..|||||.+ +.-=+.++..... -+..++|+|+-|+..|..+.+++.++
T Consensus 17 ~g~~lV~AgaGSGKT~~-L~~Ria~Li~~~~---v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 17 PGNLLVLAGAGSGKTRV-LTHRIAWLLSVEN---ASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred CCCEEEEecCCCCHHHH-HHHHHHHHHHcCC---CCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 34689999999999988 4444445543311 12457999999999999999999988
No 242
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.83 E-value=0.05 Score=44.81 Aligned_cols=44 Identities=7% Similarity=-0.103 Sum_probs=30.6
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHH
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQ 58 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~ 58 (233)
.+..+++.++||||||.. +-.++..+... ..+++.+-.+.|+-.
T Consensus 126 ~~~~ili~G~tGSGKTT~-l~all~~i~~~-------~~~iv~iEd~~E~~l 169 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTL-LNALLEEIPPE-------DERIVTIEDPPELRL 169 (270)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHHCHTT-------TSEEEEEESSS-S--
T ss_pred cceEEEEECCCccccchH-HHHHhhhcccc-------ccceEEeccccceee
Confidence 467899999999999955 66677666431 357788877777743
No 243
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.82 E-value=2 Score=35.56 Aligned_cols=23 Identities=9% Similarity=-0.045 Sum_probs=19.4
Q ss_pred CCCCCCCCceeEecCCCCCchHH
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~ 24 (233)
+-++-.|+...+.++.|+|||..
T Consensus 63 l~pigrGQr~~Ifg~~g~GKt~L 85 (274)
T cd01132 63 MIPIGRGQRELIIGDRQTGKTAI 85 (274)
T ss_pred cCCcccCCEEEeeCCCCCCccHH
Confidence 34567899999999999999974
No 244
>PRK04328 hypothetical protein; Provisional
Probab=93.63 E-value=0.15 Score=41.66 Aligned_cols=54 Identities=9% Similarity=-0.141 Sum_probs=37.2
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
++.|.-+++.+++|+|||.-.+--+.+.+ .++..+++++ +.|-..++.+.++.+
T Consensus 20 ip~gs~ili~G~pGsGKT~l~~~fl~~~~--------~~ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 20 IPERNVVLLSGGPGTGKSIFSQQFLWNGL--------QMGEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CcCCcEEEEEcCCCCCHHHHHHHHHHHHH--------hcCCcEEEEE-eeCCHHHHHHHHHHc
Confidence 45788899999999999965333333433 2355677666 666777788877777
No 245
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.59 E-value=0.07 Score=42.66 Aligned_cols=55 Identities=11% Similarity=-0.039 Sum_probs=36.0
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
++.|.-+++.+++|||||.-..--+.+.+.. .+.++++++ +.|-..++.+.++.+
T Consensus 16 ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~-------~ge~vlyvs-~ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 16 IPKGSVVLISGPPGSGKTTLALQFLYNGLKN-------FGEKVLYVS-FEEPPEELIENMKSF 70 (226)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHH-------HT--EEEEE-SSS-HHHHHHHHHTT
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhh-------cCCcEEEEE-ecCCHHHHHHHHHHc
Confidence 4678889999999999996633334444432 044677776 456677877787776
No 246
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=93.38 E-value=0.2 Score=46.87 Aligned_cols=56 Identities=4% Similarity=-0.156 Sum_probs=42.1
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
+.++++.|.+|||||.+ ++--+.++..... ....+.|+++.|+..+.++.+.+.+.
T Consensus 14 ~~~~~V~Ag~GSGKT~~-L~~ri~~ll~~~~---~~p~~IL~vTFt~~Aa~em~~Rl~~~ 69 (664)
T TIGR01074 14 TGPCLVLAGAGSGKTRV-ITNKIAYLIQNCG---YKARNIAAVTFTNKAAREMKERVAKT 69 (664)
T ss_pred CCCEEEEecCCCCHHHH-HHHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 45789999999999988 4444444443211 12457899999999999999999876
No 247
>PRK06921 hypothetical protein; Provisional
Probab=93.33 E-value=0.21 Score=41.18 Aligned_cols=50 Identities=12% Similarity=-0.099 Sum_probs=32.9
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVA 64 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~ 64 (233)
.+..++..++||+|||.. +..+...+..+ .+..++++ +..++..++.+.+
T Consensus 116 ~~~~l~l~G~~G~GKThL-a~aia~~l~~~------~g~~v~y~-~~~~l~~~l~~~~ 165 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHL-LTAAANELMRK------KGVPVLYF-PFVEGFGDLKDDF 165 (266)
T ss_pred CCCeEEEECCCCCcHHHH-HHHHHHHHhhh------cCceEEEE-EHHHHHHHHHHHH
Confidence 356799999999999966 45566666532 14455554 5567766665544
No 248
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.27 E-value=0.22 Score=40.17 Aligned_cols=54 Identities=7% Similarity=-0.082 Sum_probs=36.2
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
++.|.-+++.+++|+|||.. ++-++..... ++.++++++ +.+-..+..+.+..+
T Consensus 21 i~~g~~~~i~G~~G~GKTtl-~~~~~~~~~~-------~g~~~~yi~-~e~~~~~~~~~~~~~ 74 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSIL-SQRLAYGFLQ-------NGYSVSYVS-TQLTTTEFIKQMMSL 74 (230)
T ss_pred CCCCcEEEEECCCCCCHHHH-HHHHHHHHHh-------CCCcEEEEe-CCCCHHHHHHHHHHh
Confidence 45688899999999999966 3333433432 356678887 445556666666665
No 249
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.23 E-value=0.2 Score=46.00 Aligned_cols=58 Identities=10% Similarity=-0.002 Sum_probs=40.5
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKE 66 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~ 66 (233)
+.++-.++.+++|||||.+ +..++..+....+. ..+.++++.+||..-|..+.+....
T Consensus 158 l~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~~--~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 158 LKSNFSLITGGPGTGKTTT-VARLLLALVKQSPK--QGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred hhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhccc--cCCCcEEEECCcHHHHHHHHHHHHh
Confidence 4567789999999999976 55566555443110 1135799999998888877766544
No 250
>PF12846 AAA_10: AAA-like domain
Probab=93.18 E-value=0.13 Score=42.42 Aligned_cols=42 Identities=7% Similarity=0.048 Sum_probs=31.9
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHH
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQ 58 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~ 58 (233)
+++++.++||||||.... .++..+.. .+..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~-------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR-------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH-------cCCCEEEEcCCchHHH
Confidence 578999999999997744 66666654 3678888888766665
No 251
>PRK06526 transposase; Provisional
Probab=93.07 E-value=0.1 Score=42.72 Aligned_cols=47 Identities=4% Similarity=-0.087 Sum_probs=30.1
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQ 61 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~ 61 (233)
-.+.++++.+|+|+|||.. +..+...+.. .|.++++. +..+|..+..
T Consensus 96 ~~~~nlll~Gp~GtGKThL-a~al~~~a~~-------~g~~v~f~-t~~~l~~~l~ 142 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHL-AIGLGIRACQ-------AGHRVLFA-TAAQWVARLA 142 (254)
T ss_pred hcCceEEEEeCCCCchHHH-HHHHHHHHHH-------CCCchhhh-hHHHHHHHHH
Confidence 4577899999999999976 4445554443 24455553 4445665553
No 252
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=93.05 E-value=0.59 Score=41.22 Aligned_cols=71 Identities=17% Similarity=0.268 Sum_probs=53.5
Q ss_pred CCCeEEEEecchhHHHHHHHHHhh----CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc------cCcCCcCCCC
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRR----ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD------VAARGLDVED 174 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~------~~~~Gldi~~ 174 (233)
...+++|.++|+..+.++++.+.. .++++..++|+.+...+...+. +..+|+|+|. .....++..+
T Consensus 72 ~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~Tp~rl~~~~~~~~~~~~~ 147 (434)
T PRK11192 72 GPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFS----ENQDIVVATPGRLLQYIKEENFDCRA 147 (434)
T ss_pred CCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCcCccc
Confidence 346899999999999888776654 4688999999999887765543 4678999995 1224567777
Q ss_pred ccEEE
Q psy14082 175 VNTVN 179 (233)
Q Consensus 175 v~~VI 179 (233)
+++||
T Consensus 148 v~~lV 152 (434)
T PRK11192 148 VETLI 152 (434)
T ss_pred CCEEE
Confidence 77766
No 253
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=92.98 E-value=0.19 Score=48.63 Aligned_cols=66 Identities=15% Similarity=0.041 Sum_probs=49.1
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEcC
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFGG 79 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~gg 79 (233)
|--++-.|.||+|||++=+= ++..+-.. ..|.|..|-.-.|-|..|+.+.+++- ..+-..++++||
T Consensus 431 GfF~vNMASTGcGKT~aNAR-ImyaLsd~-----~~g~RfsiALGLRTLTLQTGda~r~rL~L~~ddLAVlIGs 498 (1110)
T TIGR02562 431 GAFGVNMASTGCGKTLANAR-AMYALRDD-----KQGARFAIALGLRSLTLQTGHALKTRLNLSDDDLAVLIGG 498 (1110)
T ss_pred CeEEEEecCCCcchHHHHHH-HHHHhCCC-----CCCceEEEEccccceeccchHHHHHhcCCCccceEEEECH
Confidence 45577789999999988443 33333221 45778888889999999999999986 334568888887
No 254
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.98 E-value=0.28 Score=40.22 Aligned_cols=55 Identities=11% Similarity=-0.081 Sum_probs=32.8
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcC---cHHHHHHHHHHHHHh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAP---TRELAQQIQTVAKEF 67 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~P---treL~~Q~~~~~~~~ 67 (233)
++.|.=+++.+++|+|||.. .+-++.... .++.++++++- ...+.+++......+
T Consensus 33 ip~gs~~lI~G~pGtGKT~l-~~qf~~~~a-------~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~ 90 (259)
T TIGR03878 33 IPAYSVINITGVSDTGKSLM-VEQFAVTQA-------SRGNPVLFVTVESPANFVYTSLKERAKAM 90 (259)
T ss_pred eECCcEEEEEcCCCCCHHHH-HHHHHHHHH-------hCCCcEEEEEecCCchHHHHHHHHHHHHc
Confidence 35688899999999999965 333332222 23567888873 233344444444444
No 255
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=92.88 E-value=0.54 Score=43.36 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=53.8
Q ss_pred CCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc
Q psy14082 106 AFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD 164 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~ 164 (233)
.+.++|.++++.-++.-...|+..|+.+..+|++++..++..+++....|+.++++.|+
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tp 111 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAP 111 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECh
Confidence 35688999999999988999999999999999999999999999999999999998874
No 256
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.77 E-value=0.089 Score=46.75 Aligned_cols=25 Identities=4% Similarity=-0.116 Sum_probs=20.7
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhcc
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISHQ 36 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~~ 36 (233)
+++.+|||||||.+ +..+++.+...
T Consensus 261 iLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 261 ILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred EEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 67899999999977 77788877653
No 257
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.75 E-value=0.25 Score=49.45 Aligned_cols=57 Identities=14% Similarity=-0.010 Sum_probs=43.1
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
.+|+++++.|+-|||||.+-+--++..+... ..--+.|+++=|+.-|..+.+++.+.
T Consensus 12 ~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~ 68 (1232)
T TIGR02785 12 TRGQNILVSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEA 68 (1232)
T ss_pred CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHH
Confidence 3588999999999999988555455555422 11235999999999999888888775
No 258
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=92.71 E-value=0.094 Score=50.15 Aligned_cols=151 Identities=17% Similarity=0.115 Sum_probs=83.1
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCc-EEEEEcCCCC-CCe
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALR-NICIFGGTPK-GPQ 85 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~-~~~~~gg~~~-~~~ 85 (233)
+.+.+....-|.|||+. .+..+..+.... ....+.++|+||+ +++.+|.+.+.++.+.++ +....|.... +..
T Consensus 358 ~~~~ilaD~mglGKTiq-~i~~l~~~~~~~---~~~~~~~liv~p~-s~~~nw~~e~~k~~~~~~~~~~~~g~~~~~~~~ 432 (866)
T COG0553 358 LLGGILADDMGLGKTVQ-TIALLLSLLESI---KVYLGPALIVVPA-SLLSNWKREFEKFAPDLRLVLVYHGEKSELDKK 432 (866)
T ss_pred cCCCcccccccchhHHH-HHHHHHhhhhcc---cCCCCCeEEEecH-HHHHHHHHHHhhhCccccceeeeeCCcccccHH
Confidence 44556667899999988 444444433321 1114578999998 889999999999977777 6777766542 110
Q ss_pred eEEeccchhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc
Q psy14082 86 DCLPLHRFVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV 165 (233)
Q Consensus 86 ~lv~l~r~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~ 165 (233)
.....+...... .++|+.-..+.+.+...+ ..|+.+...+...++-++... +.++.
T Consensus 433 --------~~~~~~~~~~~~---~~~~~v~itty~~l~~~~--------~~~~~l~~~~~~~~v~DEa~~-----ikn~~ 488 (866)
T COG0553 433 --------REALRDLLKLHL---VIIFDVVITTYELLRRFL--------VDHGGLKKIEWDRVVLDEAHR-----IKNDQ 488 (866)
T ss_pred --------HHHHHHHhhhcc---cceeeEEechHHHHHHhh--------hhHHHHhhceeeeeehhhHHH-----Hhhhh
Confidence 111111111111 566666666655555533 112222222222222222111 44455
Q ss_pred CcCCcCCCCccEEEEecCCCCc
Q psy14082 166 AARGLDVEDVNTVNIGSLQLSA 187 (233)
Q Consensus 166 ~~~Gldi~~v~~VI~~d~P~~~ 187 (233)
..++..+......+.+++|.++
T Consensus 489 s~~~~~l~~~~~~~~~~LtgTP 510 (866)
T COG0553 489 SSEGKALQFLKALNRLDLTGTP 510 (866)
T ss_pred hHHHHHHHHHhhcceeeCCCCh
Confidence 5556666666667777777777
No 259
>PRK08181 transposase; Validated
Probab=92.70 E-value=0.2 Score=41.40 Aligned_cols=47 Identities=13% Similarity=0.031 Sum_probs=31.6
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQT 62 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~ 62 (233)
.+.++++.+|+|+|||.. +..+...+..+ |..+ +..+..+|..++..
T Consensus 105 ~~~nlll~Gp~GtGKTHL-a~Aia~~a~~~-------g~~v-~f~~~~~L~~~l~~ 151 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHL-AAAIGLALIEN-------GWRV-LFTRTTDLVQKLQV 151 (269)
T ss_pred cCceEEEEecCCCcHHHH-HHHHHHHHHHc-------CCce-eeeeHHHHHHHHHH
Confidence 467899999999999965 44455555432 4445 44566788887644
No 260
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=92.63 E-value=0.54 Score=43.72 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=39.7
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHH--HHHHHHHHHHHhhc
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRE--LAQQIQTVAKEFSS 69 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~Ptre--L~~Q~~~~~~~~~~ 69 (233)
-...|+++.++||+|||..+.. ++..... .+..++++=|-.+ |...++..++..+.
T Consensus 174 ~~~~H~lv~G~TGsGKT~l~~~-l~~q~i~-------~g~~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 174 HRVGHTLVLGTTGVGKTRLAEL-LITQDIR-------RGDVVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CCCCcEEEECCCCCCHHHHHHH-HHHHHHH-------cCCeEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 3567899999999999977644 4444443 2456777777754 88888888877733
No 261
>PRK05973 replicative DNA helicase; Provisional
Probab=92.60 E-value=0.25 Score=39.98 Aligned_cols=54 Identities=11% Similarity=0.007 Sum_probs=36.6
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
+..|.=+++.++||+|||.. ++-++..... +|.+++|++ .-|=..|+.+.+..+
T Consensus 61 l~~Gsl~LIaG~PG~GKT~l-alqfa~~~a~-------~Ge~vlyfS-lEes~~~i~~R~~s~ 114 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLL-GLELAVEAMK-------SGRTGVFFT-LEYTEQDVRDRLRAL 114 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEE-EeCCHHHHHHHHHHc
Confidence 45677889999999999965 4433333322 255677775 335577888888777
No 262
>CHL00181 cbbX CbbX; Provisional
Probab=92.58 E-value=5.4 Score=33.27 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=33.4
Q ss_pred cCCCCeEEEEecchhHHHHHH---HHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCC
Q psy14082 103 KNPAFKVIVFVETKKKVEDIT---RALRRERHSAICIHGDKTQQDRDYVLNDFRQG 155 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~---~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 155 (233)
.....-.+|++.+.+..+.+. ..|..+ +...+.-..++.++..++++.|-+.
T Consensus 157 ~~~~~~~vI~ag~~~~~~~~~~~np~L~sR-~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 157 NQRDDLVVIFAGYKDRMDKFYESNPGLSSR-IANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred cCCCCEEEEEeCCcHHHHHHHhcCHHHHHh-CCceEEcCCcCHHHHHHHHHHHHHH
Confidence 344556778887766655443 334333 2444556678899999999998654
No 263
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.55 E-value=0.31 Score=39.24 Aligned_cols=49 Identities=16% Similarity=0.223 Sum_probs=32.2
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEc---CcHHHHHHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLA---PTRELAQQI 60 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~---PtreL~~Q~ 60 (233)
+..|.=+++.|+||+|||. +++-++.....+ .+..+++++ |..++...+
T Consensus 10 l~~G~l~lI~G~~G~GKT~-~~~~~~~~~~~~------~g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTA-FALNIAENIAKK------QGKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred CCCCeEEEEEeCCCCCHHH-HHHHHHHHHHHh------CCCceEEEeCCCCHHHHHHHH
Confidence 4567778999999999994 455555554432 256788887 344444443
No 264
>KOG0347|consensus
Probab=92.51 E-value=0.4 Score=43.16 Aligned_cols=53 Identities=23% Similarity=0.349 Sum_probs=47.0
Q ss_pred eEEEEecchhHHHHHHHHHhh----CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc
Q psy14082 108 KVIVFVETKKKVEDITRALRR----ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD 164 (233)
Q Consensus 108 k~iIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~ 164 (233)
-.+||++||+-+.++.+.|.. -++.+..+.|||+...++.+++. .-+|+|||+
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 389999999999999988864 37999999999999999999887 568999994
No 265
>PRK12377 putative replication protein; Provisional
Probab=92.45 E-value=0.26 Score=40.22 Aligned_cols=47 Identities=2% Similarity=-0.080 Sum_probs=32.8
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVA 64 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~ 64 (233)
..++..+++|+|||.. +..+.+.+..+ +..+ +.++..+|..++...+
T Consensus 102 ~~l~l~G~~GtGKThL-a~AIa~~l~~~-------g~~v-~~i~~~~l~~~l~~~~ 148 (248)
T PRK12377 102 TNFVFSGKPGTGKNHL-AAAIGNRLLAK-------GRSV-IVVTVPDVMSRLHESY 148 (248)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHc-------CCCe-EEEEHHHHHHHHHHHH
Confidence 4688999999999966 56667666542 3344 4556678888776554
No 266
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.38 E-value=0.36 Score=37.31 Aligned_cols=61 Identities=11% Similarity=-0.001 Sum_probs=35.8
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCC---CCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPV---KQGDGPIALVLAPTRELAQQIQTVAKEFS 68 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~---~~~~~~~~lil~PtreL~~Q~~~~~~~~~ 68 (233)
..|.-+++.|++|+|||.. ++-+...+....+. ....+.++|++..-.. ..++.+.+....
T Consensus 30 ~~g~l~~i~g~~g~GKT~~-~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTL-ALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp -TTSEEEEEECSTSSHHHH-HHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHH-HHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 3577799999999999955 66666666542111 1124567787766433 567777777763
No 267
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=92.37 E-value=0.19 Score=47.24 Aligned_cols=33 Identities=15% Similarity=-0.033 Sum_probs=28.0
Q ss_pred CCCEEEecccCcCCcCCCCccEEEEecCCCCcc
Q psy14082 156 KAPILVATDVAARGLDVEDVNTVNIGSLQLSAN 188 (233)
Q Consensus 156 ~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~ 188 (233)
..+.+.+--.+-+|.|-|+|=.++-.....|..
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~Sei 515 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEI 515 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcch
Confidence 478899999999999999999888887776665
No 268
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.37 E-value=0.21 Score=39.25 Aligned_cols=39 Identities=8% Similarity=-0.072 Sum_probs=24.7
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHH
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTREL 56 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL 56 (233)
+++.+|||||||.. +-.++..+... .+.+++.+--..|+
T Consensus 4 ilI~GptGSGKTTl-l~~ll~~~~~~------~~~~i~t~e~~~E~ 42 (198)
T cd01131 4 VLVTGPTGSGKSTT-LAAMIDYINKN------KTHHILTIEDPIEF 42 (198)
T ss_pred EEEECCCCCCHHHH-HHHHHHHhhhc------CCcEEEEEcCCccc
Confidence 57889999999966 55566655422 23455666554454
No 269
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.35 E-value=0.35 Score=38.63 Aligned_cols=54 Identities=17% Similarity=-0.014 Sum_probs=33.9
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
++.|.-+++.+++|+|||.. +.-++..... ++..++++.- .+...++.+..+.+
T Consensus 17 i~~G~~~~i~G~~G~GKT~l-~~~~~~~~~~-------~g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIF-CLHFAYKGLR-------DGDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CcCCeEEEEECCCCCChHHH-HHHHHHHHHh-------cCCeEEEEEc-cCCHHHHHHHHHHh
Confidence 45688899999999999955 3333322222 2445666653 45566666666555
No 270
>KOG0744|consensus
Probab=92.21 E-value=1.8 Score=36.78 Aligned_cols=145 Identities=12% Similarity=0.012 Sum_probs=77.7
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCC-CceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCCCCee
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGD-GPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPKGPQD 86 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~-~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~~~~~ 86 (233)
.+=+++.+|+|+|||-. .-++.+++--. ...+ ..-.+|=.....|-..|+.+--++-.
T Consensus 177 NRliLlhGPPGTGKTSL-CKaLaQkLSIR---~~~~y~~~~liEinshsLFSKWFsESgKlV~----------------- 235 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSL-CKALAQKLSIR---TNDRYYKGQLIEINSHSLFSKWFSESGKLVA----------------- 235 (423)
T ss_pred eeEEEEeCCCCCChhHH-HHHHHHhheee---ecCccccceEEEEehhHHHHHHHhhhhhHHH-----------------
Confidence 45578899999999944 55666665421 1122 22345545555565555555444300
Q ss_pred EEeccchhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHH------HHHHHHhhCCCCCEE
Q psy14082 87 CLPLHRFVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDR------DYVLNDFRQGKAPIL 160 (233)
Q Consensus 87 lv~l~r~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r------~~~~~~f~~g~~~iL 160 (233)
++.+.++++. ..+..+||+- .+.++.++..=.. ...+.-|.+.. ..-+++.+.-.--++
T Consensus 236 -----kmF~kI~ELv---~d~~~lVfvL-IDEVESLa~aR~s------~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 236 -----KMFQKIQELV---EDRGNLVFVL-IDEVESLAAARTS------ASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred -----HHHHHHHHHH---hCCCcEEEEE-eHHHHHHHHHHHh------hhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 0222222222 2255667664 4667766655211 11122222211 122444555554566
Q ss_pred EecccCcCCcCCCC---ccEEEEecCCCCcc
Q psy14082 161 VATDVAARGLDVED---VNTVNIGSLQLSAN 188 (233)
Q Consensus 161 v~T~~~~~Gldi~~---v~~VI~~d~P~~~~ 188 (233)
.||+-+..-+|..- .|.+.+.++|....
T Consensus 301 L~TSNl~~siD~AfVDRADi~~yVG~Pt~~a 331 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVDRADIVFYVGPPTAEA 331 (423)
T ss_pred EeccchHHHHHHHhhhHhhheeecCCccHHH
Confidence 88988888899654 45788888887654
No 271
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=92.20 E-value=0.59 Score=42.94 Aligned_cols=70 Identities=9% Similarity=0.112 Sum_probs=52.0
Q ss_pred CCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----cCcC--CcCCCC
Q psy14082 106 AFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----VAAR--GLDVED 174 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~~--Gldi~~ 174 (233)
..++||.++|++.+.++.+.+.+. ++.+..+||+.+.+.+...++ +..+|+|+|. .+.. .+++..
T Consensus 84 ~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~----~~~dIiV~TP~rL~~~l~~~~~~~l~~ 159 (572)
T PRK04537 84 DPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ----QGVDVIIATPGRLIDYVKQHKVVSLHA 159 (572)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh----CCCCEEEECHHHHHHHHHhccccchhh
Confidence 468999999999999988887653 678899999998877665554 3578999994 3222 355666
Q ss_pred ccEEE
Q psy14082 175 VNTVN 179 (233)
Q Consensus 175 v~~VI 179 (233)
++++|
T Consensus 160 v~~lV 164 (572)
T PRK04537 160 CEICV 164 (572)
T ss_pred eeeeE
Confidence 66554
No 272
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.18 E-value=0.22 Score=40.40 Aligned_cols=25 Identities=0% Similarity=-0.282 Sum_probs=18.9
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
-.+++.|++||||| ++++-++..+.
T Consensus 14 fr~viIG~sGSGKT-~li~~lL~~~~ 38 (241)
T PF04665_consen 14 FRMVIIGKSGSGKT-TLIKSLLYYLR 38 (241)
T ss_pred ceEEEECCCCCCHH-HHHHHHHHhhc
Confidence 35789999999999 44776765543
No 273
>KOG1016|consensus
Probab=92.14 E-value=0.35 Score=45.30 Aligned_cols=89 Identities=18% Similarity=0.307 Sum_probs=72.9
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCC------------------eeEEEeCCCCHHHHHHHHHHhhCCC---CCEEEe
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERH------------------SAICIHGDKTQQDRDYVLNDFRQGK---APILVA 162 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~------------------~~~~~~~~~~~~~r~~~~~~f~~g~---~~iLv~ 162 (233)
..+.++|+|....-..+.+.+.|.+..+ +-.-+.|..+..+|++.+++|++.. +-+|++
T Consensus 717 ~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlflls 796 (1387)
T KOG1016|consen 717 QIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLS 796 (1387)
T ss_pred ccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeeh
Confidence 3567899999999988888888876522 2234678889999999999998643 458899
Q ss_pred cccCcCCcCCCCccEEEEecCCCCcccccc
Q psy14082 163 TDVAARGLDVEDVNTVNIGSLQLSANHNIS 192 (233)
Q Consensus 163 T~~~~~Gldi~~v~~VI~~d~P~~~~~~i~ 192 (233)
|...+-|+++-..+-++.||--+++.|..+
T Consensus 797 trag~lGinLIsanr~~ifda~wnpchdaq 826 (1387)
T KOG1016|consen 797 TRAGSLGINLISANRCIIFDACWNPCHDAQ 826 (1387)
T ss_pred hccccccceeeccceEEEEEeecCccccch
Confidence 999999999999999999999999886664
No 274
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.14 E-value=5.3 Score=34.41 Aligned_cols=54 Identities=11% Similarity=-0.006 Sum_probs=32.3
Q ss_pred CCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
-++-.|.-..+.++.|+|||..- .-++ ++. +.. ++|.+--=|-...+.+.+++|
T Consensus 152 ~Pi~kGqr~~I~G~~G~GKT~L~-~~Ia----k~~----~~d--vvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 152 FPVVKGGTAAIPGPFGCGKTVIQ-QSLS----KYS----NSD--IVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred ccccCCCEEEEECCCCCChHHHH-HHHH----hCC----CCC--EEEEEEeCCChHHHHHHHHHH
Confidence 35667888888999999999762 2222 221 223 344444445566666666665
No 275
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.13 E-value=0.15 Score=43.00 Aligned_cols=24 Identities=4% Similarity=-0.346 Sum_probs=18.5
Q ss_pred CCCceeEecCCCCCchHHhHHHHHH
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAV 31 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~ 31 (233)
.|..+++.++||||||.. +-.++.
T Consensus 143 ~~~~ili~G~tGsGKTTl-l~al~~ 166 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTF-LKSLVD 166 (308)
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHc
Confidence 588999999999999954 443443
No 276
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=92.13 E-value=0.21 Score=39.96 Aligned_cols=47 Identities=11% Similarity=-0.048 Sum_probs=34.2
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHH
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQI 60 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~ 60 (233)
-++++.+.+.||||||.+ +--+++.+.. ..+..++|+=|.-|=+.-.
T Consensus 22 ~~~H~~I~G~TGsGKS~~-~~~ll~~l~~------~~~~~~ii~D~~GEY~~~~ 68 (229)
T PF01935_consen 22 FNRHIAIFGTTGSGKSNT-VKVLLEELLK------KKGAKVIIFDPHGEYASLF 68 (229)
T ss_pred ccceEEEECCCCCCHHHH-HHHHHHHHHh------cCCCCEEEEcCCCcchhhh
Confidence 368999999999999977 6668888873 2355677777776654443
No 277
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.07 E-value=0.083 Score=44.40 Aligned_cols=20 Identities=5% Similarity=-0.433 Sum_probs=16.7
Q ss_pred CCCCceeEecCCCCCchHHh
Q psy14082 6 ESGCQNFSKITNYLLSPPQY 25 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~ 25 (233)
+...+++..+|||||||+..
T Consensus 95 L~KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eeeccEEEECCCCCcHHHHH
Confidence 45668999999999999763
No 278
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.01 E-value=0.25 Score=45.62 Aligned_cols=56 Identities=9% Similarity=-0.056 Sum_probs=39.9
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAK 65 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~ 65 (233)
+..+-.++.+++|||||.+ +.-++..+.+.. ..+..++++.+||..-|..+.+.+.
T Consensus 165 ~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~~---~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 165 LTRRISVISGGPGTGKTTT-VAKLLAALIQLA---DGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred hcCCeEEEEeCCCCCHHHH-HHHHHHHHHHhc---CCCCcEEEEECCcHHHHHHHHHHHH
Confidence 4566789999999999976 444555554321 0224578899999998888877664
No 279
>PRK09183 transposase/IS protein; Provisional
Probab=91.96 E-value=0.43 Score=39.21 Aligned_cols=48 Identities=8% Similarity=-0.081 Sum_probs=30.4
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQ 61 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~ 61 (233)
+.+|..+++.+|+|+|||.. +..+...... .|..++++ +..+|..++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThL-a~al~~~a~~-------~G~~v~~~-~~~~l~~~l~ 146 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHL-AIALGYEAVR-------AGIKVRFT-TAADLLLQLS 146 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEE-eHHHHHHHHH
Confidence 45688899999999999965 3333333322 25556655 4456765543
No 280
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=91.91 E-value=1.1 Score=39.98 Aligned_cols=69 Identities=16% Similarity=0.302 Sum_probs=51.5
Q ss_pred CeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc------cCcCCcCCCCcc
Q psy14082 107 FKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD------VAARGLDVEDVN 176 (233)
Q Consensus 107 ~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~------~~~~Gldi~~v~ 176 (233)
.++||.++|++.+.++.+.+.+. ++.+..++|+.+.+.+...+ .+..+|+|+|. .....+++.+++
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IiV~TP~rL~~~~~~~~~~l~~v~ 151 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL----RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHH----cCCCcEEEEChHHHHHHHHcCCcccccce
Confidence 47999999999999888887653 57888899998877654433 25689999994 223446777777
Q ss_pred EEE
Q psy14082 177 TVN 179 (233)
Q Consensus 177 ~VI 179 (233)
++|
T Consensus 152 ~lV 154 (456)
T PRK10590 152 ILV 154 (456)
T ss_pred EEE
Confidence 766
No 281
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=91.89 E-value=0.24 Score=42.92 Aligned_cols=42 Identities=5% Similarity=-0.217 Sum_probs=27.0
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHH
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTREL 56 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL 56 (233)
--+++.+|||||||.. +-.+++.+... ....+++.+=-..|+
T Consensus 150 GlilI~G~TGSGKTT~-l~al~~~i~~~-----~~~~~IvtiEdp~E~ 191 (372)
T TIGR02525 150 GLGLICGETGSGKSTL-AASIYQHCGET-----YPDRKIVTYEDPIEY 191 (372)
T ss_pred CEEEEECCCCCCHHHH-HHHHHHHHHhc-----CCCceEEEEecCchh
Confidence 3588999999999955 66777777543 123345555444444
No 282
>PRK08727 hypothetical protein; Validated
Probab=91.76 E-value=0.48 Score=38.21 Aligned_cols=50 Identities=10% Similarity=0.018 Sum_probs=32.4
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
+-+++.+++|+|||.. +-.+...+.+ .+.+++++ |..++.....+.++.+
T Consensus 42 ~~l~l~G~~G~GKThL-~~a~~~~~~~-------~~~~~~y~-~~~~~~~~~~~~~~~l 91 (233)
T PRK08727 42 DWLYLSGPAGTGKTHL-ALALCAAAEQ-------AGRSSAYL-PLQAAAGRLRDALEAL 91 (233)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHH-------cCCcEEEE-eHHHhhhhHHHHHHHH
Confidence 3489999999999965 4445555543 25566665 4556666655655555
No 283
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=91.75 E-value=0.88 Score=42.16 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=43.3
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcH--HHHHHHHHHHHHhhcCCcEEEEE
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTR--ELAQQIQTVAKEFSSALRNICIF 77 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~Ptr--eL~~Q~~~~~~~~~~~~~~~~~~ 77 (233)
..-.|.++.++||+|||..+..-+.+.+ . .+..++++=|-. ++..-++..++..+..-....+.
T Consensus 178 ~~~gHtlV~GtTGsGKT~l~~~li~q~i-~-------~g~~vi~fDpkgD~el~~~~~~~~~~~GR~~~f~~~~ 243 (643)
T TIGR03754 178 ERVGHTLVLGTTRVGKTRLAELLITQDI-R-------RGDVVIVFDPKGDADLLKRMYAEAKRAGRLDEFYVFH 243 (643)
T ss_pred cccCceEEECCCCCCHHHHHHHHHHHHH-H-------cCCeEEEEeCCCCHHHHHHHHHHHHHhCCCCceEEec
Confidence 3567899999999999988666444444 2 355677777766 57777777777774433333333
No 284
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.75 E-value=1.7 Score=37.65 Aligned_cols=27 Identities=11% Similarity=-0.182 Sum_probs=19.9
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
..|.-++..+|||+|||.+.. -+..++
T Consensus 135 ~~g~ii~lvGptGvGKTTtia-kLA~~~ 161 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTA-KLAARC 161 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHH-HHHHHH
Confidence 457789999999999998743 344443
No 285
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=91.72 E-value=0.96 Score=39.81 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=50.9
Q ss_pred CCCeEEEEecchhHHHHHHHHHhh----CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----cC-cCCcCCCC
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRR----ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----VA-ARGLDVED 174 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~-~~Gldi~~ 174 (233)
.+.+++|.++|++-+.++.+.+.. .++++..++|+.+...+...++ ...+|+|+|. .+ ...+++.+
T Consensus 82 ~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~TP~~l~~~l~~~~~~l~~ 157 (423)
T PRK04837 82 NQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLE----SGVDILIGTTGRLIDYAKQNHINLGA 157 (423)
T ss_pred CCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEECHHHHHHHHHcCCccccc
Confidence 346899999999999998776653 4788999999988766554432 3578999995 22 22356666
Q ss_pred ccEEE
Q psy14082 175 VNTVN 179 (233)
Q Consensus 175 v~~VI 179 (233)
+.++|
T Consensus 158 v~~lV 162 (423)
T PRK04837 158 IQVVV 162 (423)
T ss_pred ccEEE
Confidence 66665
No 286
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.58 E-value=0.34 Score=43.54 Aligned_cols=54 Identities=9% Similarity=-0.116 Sum_probs=39.9
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
++.|.-+++.+++|+|||...+- .+.... .++.++++++ +.|-..|+...++.+
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~-f~~~~~-------~~ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSK-FLENAC-------ANKERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHH-HHHHHH-------HCCCeEEEEE-eeCCHHHHHHHHHHc
Confidence 45788899999999999965333 333332 2366788766 678899999999888
No 287
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=91.48 E-value=0.43 Score=39.03 Aligned_cols=54 Identities=15% Similarity=0.047 Sum_probs=38.2
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
++.|+-+++.+++|||||.- .+=.+..... .|-.++++ .+.|...++.+.+..+
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f-~~qfl~~~~~-------~ge~vlyv-s~~e~~~~l~~~~~~~ 73 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIF-ALQFLYEGAR-------EGEPVLYV-STEESPEELLENARSF 73 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHH-HHHHHHHHHh-------cCCcEEEE-EecCCHHHHHHHHHHc
Confidence 46789999999999999954 4433333332 24455554 5668888999999887
No 288
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=91.36 E-value=0.53 Score=37.53 Aligned_cols=54 Identities=15% Similarity=-0.062 Sum_probs=36.2
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
++.|.-+++.+++|+|||.. ++-++..... ++..++++.. .+-..|+.+.+..+
T Consensus 13 i~~g~~~li~G~~G~GKt~~-~~~~~~~~~~-------~g~~~~y~s~-e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 13 FPEGHVIVVIGEYGTGKTTF-SLQFLYQGLK-------NGEKAMYISL-EEREERILGYAKSK 66 (224)
T ss_pred CCCCeEEEEECCCCCCHHHH-HHHHHHHHHh-------CCCeEEEEEC-CCCHHHHHHHHHHc
Confidence 35688889999999999854 3333322221 2556777654 56788888888777
No 289
>PTZ00185 ATPase alpha subunit; Provisional
Probab=91.29 E-value=9.2 Score=34.80 Aligned_cols=65 Identities=8% Similarity=0.120 Sum_probs=36.6
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEE---cCcHHHHHHHHHHHHHh
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVL---APTRELAQQIQTVAKEF 67 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil---~PtreL~~Q~~~~~~~~ 67 (233)
+-++-+|+-..+.+..|+|||...+=.+++...-+.....+....+++. --.+|.++ +.+.+++.
T Consensus 183 LiPIGRGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~e-i~~~L~e~ 250 (574)
T PTZ00185 183 MIPIGRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSY 250 (574)
T ss_pred cccccCCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHH-HHHHHHhc
Confidence 3457789999999999999997743334443311000000122233333 25666665 77777766
No 290
>PRK07952 DNA replication protein DnaC; Validated
Probab=91.28 E-value=0.49 Score=38.52 Aligned_cols=47 Identities=4% Similarity=-0.038 Sum_probs=31.0
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVA 64 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~ 64 (233)
..++..+++|+|||.. +..+...+... +..++++ +..+|...+...+
T Consensus 100 ~~~~l~G~~GtGKThL-a~aia~~l~~~-------g~~v~~i-t~~~l~~~l~~~~ 146 (244)
T PRK07952 100 ASFIFSGKPGTGKNHL-AAAICNELLLR-------GKSVLII-TVADIMSAMKDTF 146 (244)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHHhc-------CCeEEEE-EHHHHHHHHHHHH
Confidence 3588999999999976 55666666542 4455544 6667766555443
No 291
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=91.27 E-value=0.64 Score=36.80 Aligned_cols=39 Identities=13% Similarity=-0.037 Sum_probs=26.3
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEc
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLA 51 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~ 51 (233)
++.|.=+++.+++|+|||.. ++-++..... .+.+++++.
T Consensus 16 i~~g~i~~i~G~~GsGKT~l-~~~~a~~~~~-------~g~~v~yi~ 54 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNI-AIQLAVETAG-------QGKKVAYID 54 (218)
T ss_pred ccCCeEEEEECCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEE
Confidence 35577788999999999955 4444444432 255788874
No 292
>PRK10536 hypothetical protein; Provisional
Probab=91.21 E-value=0.35 Score=39.60 Aligned_cols=29 Identities=17% Similarity=-0.161 Sum_probs=21.6
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhc
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISH 35 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~ 35 (233)
.+.-+++.+++|||||+......++.+..
T Consensus 73 ~~~lV~i~G~aGTGKT~La~a~a~~~l~~ 101 (262)
T PRK10536 73 SKQLIFATGEAGCGKTWISAAKAAEALIH 101 (262)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 34568889999999998866656655543
No 293
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=91.19 E-value=0.45 Score=40.33 Aligned_cols=44 Identities=14% Similarity=-0.051 Sum_probs=29.8
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTREL 56 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL 56 (233)
+++|+=+.+.+|+|||||.. ++.++..... .+..++++-.-..+
T Consensus 52 lp~G~iteI~G~~GsGKTtL-aL~~~~~~~~-------~g~~v~yId~E~~~ 95 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTL-ALHAIAEAQK-------AGGTAAFIDAEHAL 95 (321)
T ss_pred CcCCeEEEEECCCCCCHHHH-HHHHHHHHHH-------cCCcEEEEcccchh
Confidence 56788889999999999955 5555555543 25567776554333
No 294
>KOG0701|consensus
Probab=91.15 E-value=0.067 Score=53.69 Aligned_cols=89 Identities=20% Similarity=0.246 Sum_probs=70.9
Q ss_pred CeEEEEecchhHHHHHHHHHhhCC-CeeEEEeCCCC-----------HHHHHHHHHHhhCCCCCEEEecccCcCCcCCCC
Q psy14082 107 FKVIVFVETKKKVEDITRALRRER-HSAICIHGDKT-----------QQDRDYVLNDFRQGKAPILVATDVAARGLDVED 174 (233)
Q Consensus 107 ~k~iIf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~-----------~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~ 174 (233)
--.++|++.+..+....+.+++.+ ..+..+.|.+. ...+.+++..|...++++|++|.++.+|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 456899999999998888887653 23333555422 223578899999999999999999999999999
Q ss_pred ccEEEEecCCCCcccccceee
Q psy14082 175 VNTVNIGSLQLSANHNISQVI 195 (233)
Q Consensus 175 v~~VI~~d~P~~~~~~i~~~~ 195 (233)
++.++.+|.|.....|+++.+
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~ 393 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKG 393 (1606)
T ss_pred hhhheeccCcchHHHHHHhhc
Confidence 999999999999988885433
No 295
>KOG0338|consensus
Probab=91.11 E-value=1.4 Score=39.43 Aligned_cols=72 Identities=15% Similarity=0.237 Sum_probs=55.1
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc-------CcCCcCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV-------AARGLDV 172 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~-------~~~Gldi 172 (233)
....++||.|+|++-+-+++...++. .+.+...-||++-+.++.+++. ..+|+|||+- -+-++|+
T Consensus 250 ~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs----~PDIVIATPGRlIDHlrNs~sf~l 325 (691)
T KOG0338|consen 250 VAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS----RPDIVIATPGRLIDHLRNSPSFNL 325 (691)
T ss_pred CcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh----CCCEEEecchhHHHHhccCCCccc
Confidence 35578999999999988887777654 5788888999999999999886 5799999952 2334556
Q ss_pred CCccEEE
Q psy14082 173 EDVNTVN 179 (233)
Q Consensus 173 ~~v~~VI 179 (233)
.++.++|
T Consensus 326 dsiEVLv 332 (691)
T KOG0338|consen 326 DSIEVLV 332 (691)
T ss_pred cceeEEE
Confidence 6666544
No 296
>PRK13764 ATPase; Provisional
Probab=91.06 E-value=0.3 Score=44.87 Aligned_cols=26 Identities=4% Similarity=-0.222 Sum_probs=20.8
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
+..+++.++||||||. ++-.++..+.
T Consensus 257 ~~~ILIsG~TGSGKTT-ll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKST-FAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHH-HHHHHHHHHh
Confidence 5679999999999995 4677777764
No 297
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=91.06 E-value=0.25 Score=45.22 Aligned_cols=31 Identities=6% Similarity=-0.245 Sum_probs=22.7
Q ss_pred CCCCCCCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
|.-...+++++.++||||||.+ +-.++..+.
T Consensus 171 ~~~~e~~h~li~G~tGsGKs~~-i~~ll~~~~ 201 (566)
T TIGR02759 171 KFGSETQHILIHGTTGSGKSVA-IRKLLRWIR 201 (566)
T ss_pred CCcccccceEEEcCCCCCHHHH-HHHHHHHHH
Confidence 4345678999999999999964 455555554
No 298
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=91.03 E-value=0.43 Score=45.14 Aligned_cols=56 Identities=9% Similarity=-0.018 Sum_probs=41.3
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
...+++.|..|||||.+ +.--+.++...... ...++|.++-|+.-|..+.+++.++
T Consensus 17 ~g~~lV~AgaGSGKT~~-l~~ria~Li~~~~i---~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 17 EGPLLIMAGAGSGKTRV-LTHRIAHLIAEKNV---APWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred CCCEEEEeCCCCCHHHH-HHHHHHHHHHcCCC---CHHHeeeeeccHHHHHHHHHHHHHH
Confidence 45689999999999988 44444444432111 2346999999999999999999877
No 299
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=90.94 E-value=0.58 Score=46.56 Aligned_cols=59 Identities=10% Similarity=-0.056 Sum_probs=44.8
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
..+..+++.|..|||||.+-.-=++..++... +-.-.+.|+++-|+.-+..+..++..-
T Consensus 14 ~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~---~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 14 PPGQSVLVEASAGTGKTFVLAERVLRLLLEGG---PLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred CCCCcEEEEEcCCCCchhHHHHHHHHHHhhcC---CCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 45779999999999999996666666666531 123457999999998888888777765
No 300
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=90.89 E-value=0.66 Score=33.26 Aligned_cols=26 Identities=4% Similarity=-0.314 Sum_probs=19.4
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.+..+++.+++|+|||.. +--+...+
T Consensus 18 ~~~~v~i~G~~G~GKT~l-~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTL-ARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHH-HHHHHHHh
Confidence 367899999999999954 44455444
No 301
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=90.78 E-value=3.3 Score=33.03 Aligned_cols=27 Identities=11% Similarity=-0.221 Sum_probs=20.9
Q ss_pred CCCCCCceeEecCCCCCchHHhHHHHHH
Q psy14082 4 PSESGCQNFSKITNYLLSPPQYMLPAAV 31 (233)
Q Consensus 4 ~~~~g~d~i~~a~tGsGKT~~~~lp~l~ 31 (233)
++-.|+.+.+.++.|+|||.. +.-++.
T Consensus 11 Pig~Gqr~~I~g~~g~GKt~L-l~~i~~ 37 (215)
T PF00006_consen 11 PIGRGQRIGIFGGAGVGKTVL-LQEIAN 37 (215)
T ss_dssp CEETTSEEEEEESTTSSHHHH-HHHHHH
T ss_pred ccccCCEEEEEcCcccccchh-hHHHHh
Confidence 566799999999999999976 333433
No 302
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=90.75 E-value=0.33 Score=45.32 Aligned_cols=50 Identities=8% Similarity=-0.067 Sum_probs=34.4
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHH
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQ 59 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q 59 (233)
||.-...++.++.+.||||||.+ +--++..+.. +|-+++|.=|+-+.+..
T Consensus 179 ip~~~E~~H~li~GttGSGKS~~-i~~LL~~ir~-------RGdrAIIyD~~GeFv~~ 228 (732)
T PRK13700 179 IIRDSEIQNFCLHGTVGAGKSEV-IRRLANYARQ-------RGDMVVIYDRSGEFVKS 228 (732)
T ss_pred CCcchhhcceEEeCCCCCCHHHH-HHHHHHHHHH-------cCCeEEEEeCCCchHHH
Confidence 45556789999999999999986 4556665543 34456666565555543
No 303
>PRK06835 DNA replication protein DnaC; Validated
Probab=90.60 E-value=0.51 Score=40.22 Aligned_cols=46 Identities=9% Similarity=-0.113 Sum_probs=31.8
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQT 62 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~ 62 (233)
+..++..++||+|||.. +..+...+.. .+..+++ .+..+|..+..+
T Consensus 183 ~~~Lll~G~~GtGKThL-a~aIa~~l~~-------~g~~V~y-~t~~~l~~~l~~ 228 (329)
T PRK06835 183 NENLLFYGNTGTGKTFL-SNCIAKELLD-------RGKSVIY-RTADELIEILRE 228 (329)
T ss_pred CCcEEEECCCCCcHHHH-HHHHHHHHHH-------CCCeEEE-EEHHHHHHHHHH
Confidence 46799999999999976 5556666653 2445554 556677776644
No 304
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=90.58 E-value=0.17 Score=31.84 Aligned_cols=27 Identities=15% Similarity=-0.071 Sum_probs=19.0
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
..|...++.+++|||||.. +-+++.++
T Consensus 21 ~~g~~tli~G~nGsGKSTl--lDAi~~~L 47 (62)
T PF13555_consen 21 PRGDVTLITGPNGSGKSTL--LDAIQTVL 47 (62)
T ss_pred CCCcEEEEECCCCCCHHHH--HHHHHHHH
Confidence 3456789999999999965 33444444
No 305
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=90.50 E-value=0.82 Score=40.00 Aligned_cols=64 Identities=14% Similarity=-0.060 Sum_probs=43.3
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcH-------HHHHHHHHHHHHhhcCCcEEEEE
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTR-------ELAQQIQTVAKEFSSALRNICIF 77 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~Ptr-------eL~~Q~~~~~~~~~~~~~~~~~~ 77 (233)
..+-+++.+++|+|||.. +-++-+..... .+..+++++.... ++-+.-.+.|++.+ ++...++.
T Consensus 112 ~~nplfi~G~~GlGKTHL-l~Aign~~~~~-----~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y-~~dlllID 182 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHL-LQAIGNEALAN-----GPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY-SLDLLLID 182 (408)
T ss_pred cCCcEEEECCCCCCHHHH-HHHHHHHHHhh-----CCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh-ccCeeeec
Confidence 356689999999999987 55566666554 4556788887755 44455555666666 66655554
No 306
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=90.48 E-value=5.9 Score=35.82 Aligned_cols=22 Identities=9% Similarity=-0.090 Sum_probs=18.9
Q ss_pred CCCCCCCceeEecCCCCCchHH
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~ 24 (233)
-++-+|+-..+.+..|+|||..
T Consensus 157 ~pigrGQr~~Ifg~~g~GKt~l 178 (502)
T PRK09281 157 IPIGRGQRELIIGDRQTGKTAI 178 (502)
T ss_pred cccccCcEEEeecCCCCCchHH
Confidence 3567899999999999999976
No 307
>PTZ00110 helicase; Provisional
Probab=90.46 E-value=1.4 Score=40.18 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=51.0
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----cCcCC-cCCCC
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----VAARG-LDVED 174 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~~G-ldi~~ 174 (233)
.+..+||.++|++-+.++.+.+.+. ++.+..++|+.+...+...+. . ..+|+|+|+ .+.++ .++..
T Consensus 202 ~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~---~-~~~IlVaTPgrL~d~l~~~~~~l~~ 277 (545)
T PTZ00110 202 DGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALR---R-GVEILIACPGRLIDFLESNVTNLRR 277 (545)
T ss_pred CCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHH---c-CCCEEEECHHHHHHHHHcCCCChhh
Confidence 4567999999999999998888765 467888899988766554443 2 479999994 33333 45556
Q ss_pred ccEEE
Q psy14082 175 VNTVN 179 (233)
Q Consensus 175 v~~VI 179 (233)
+++||
T Consensus 278 v~~lV 282 (545)
T PTZ00110 278 VTYLV 282 (545)
T ss_pred CcEEE
Confidence 66554
No 308
>KOG0330|consensus
Probab=90.46 E-value=1.7 Score=37.61 Aligned_cols=68 Identities=18% Similarity=0.110 Sum_probs=51.7
Q ss_pred hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc
Q psy14082 93 FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD 164 (233)
Q Consensus 93 ~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~ 164 (233)
.+-+++.++.......++|.++||+-+.++++.+... |+.+..+-|||+...+. .+.++ +..|||||+
T Consensus 116 aLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~--~~L~k--kPhilVaTP 187 (476)
T KOG0330|consen 116 ALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQA--NQLSK--KPHILVATP 187 (476)
T ss_pred HHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHH--HHhhc--CCCEEEeCc
Confidence 3445555666667789999999999999999888765 67899999998865544 44443 567899993
No 309
>KOG0334|consensus
Probab=90.40 E-value=4.9 Score=38.96 Aligned_cols=58 Identities=19% Similarity=0.366 Sum_probs=45.8
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHhh----CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEec
Q psy14082 102 AKNPAFKVIVFVETKKKVEDITRALRR----ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVAT 163 (233)
Q Consensus 102 ~~~~~~k~iIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T 163 (233)
....+.-.||.++|++.+.++...++. .++.++.++|+....++.. ..+.| ..|+|||
T Consensus 434 ~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qia---elkRg-~eIvV~t 495 (997)
T KOG0334|consen 434 EEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIA---ELKRG-AEIVVCT 495 (997)
T ss_pred hhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHH---HHhcC-CceEEec
Confidence 445667789999999999988888764 4889999999977665544 45557 8999998
No 310
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=90.39 E-value=0.57 Score=39.80 Aligned_cols=46 Identities=11% Similarity=-0.092 Sum_probs=31.6
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQ 58 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~ 58 (233)
++.|+=+.+.+|+|||||.. ++.++..... .+..++++.+-..+-.
T Consensus 52 lp~G~iteI~Gp~GsGKTtL-al~~~~~~~~-------~g~~~vyId~E~~~~~ 97 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTL-ALHAIAEAQK-------LGGTVAFIDAEHALDP 97 (325)
T ss_pred ccCCeEEEEECCCCCCHHHH-HHHHHHHHHH-------cCCCEEEECccccHHH
Confidence 56788889999999999955 5555544443 2566788776544443
No 311
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=90.31 E-value=6.5 Score=35.14 Aligned_cols=100 Identities=16% Similarity=0.131 Sum_probs=50.6
Q ss_pred CCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh-hc-CC-cEEEEEcC
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF-SS-AL-RNICIFGG 79 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~-~~-~~-~~~~~~gg 79 (233)
-++-.|+-+.+.|+.|+|||... ..++...... ... +.|++--=|-...+.+-++.+ .. .+ ++.++.+.
T Consensus 139 ~pigkGQR~gIfa~~GvGKt~Ll-~~i~~~~~~~-----~~~--v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~at 210 (463)
T PRK09280 139 APYAKGGKIGLFGGAGVGKTVLI-QELINNIAKE-----HGG--YSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQ 210 (463)
T ss_pred CCcccCCEEEeecCCCCChhHHH-HHHHHHHHhc-----CCC--EEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEEC
Confidence 35677899999999999999763 3333333221 112 333333334444555555555 11 12 34444444
Q ss_pred CCCCCeeEEeccchhh-----hchHHHhcCCCCeEEEEecc
Q psy14082 80 TPKGPQDCLPLHRFVF-----NCQYEMAKNPAFKVIVFVET 115 (233)
Q Consensus 80 ~~~~~~~lv~l~r~~~-----~~~~~~~~~~~~k~iIf~~~ 115 (233)
.+..+ +.|+.. -+.+++....+..++++..+
T Consensus 211 sd~p~-----~~r~~a~~~a~tiAEyfrd~~G~~VLll~Ds 246 (463)
T PRK09280 211 MNEPP-----GARLRVALTGLTMAEYFRDVEGQDVLLFIDN 246 (463)
T ss_pred CCCCH-----HHHHHHHHHHHHHHHHHHHhcCCceEEEecc
Confidence 33322 122111 12335554477777777755
No 312
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.30 E-value=0.51 Score=40.41 Aligned_cols=43 Identities=5% Similarity=-0.126 Sum_probs=28.0
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHH
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELA 57 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~ 57 (233)
+.-+++.+|||||||.. +-.++..+... .+.+++.+--..|+.
T Consensus 122 ~g~ili~G~tGSGKTT~-l~al~~~i~~~------~~~~i~tiEdp~E~~ 164 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTT-LASMIDYINKN------AAGHIITIEDPIEYV 164 (343)
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHhhCcC------CCCEEEEEcCChhhh
Confidence 45588999999999966 55566655321 234566666555653
No 313
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=90.30 E-value=1.5 Score=42.47 Aligned_cols=98 Identities=14% Similarity=0.036 Sum_probs=65.1
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEcCCCC------
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFGGTPK------ 82 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~gg~~~------ 82 (233)
-|+.++||=|||++..+|++-.-+. ++|+. |++..-=||.-=.++...+ +.++++.++..+.+.
T Consensus 154 ~IAEM~TGEGKTLvatlp~yLnAL~------G~gVH--vVTvNDYLA~RDaewm~p~y~flGLtVg~i~~~~~~~~Rr~a 225 (1025)
T PRK12900 154 KISEMATGEGKTLVSTLPTFLNALT------GRGVH--VVTVNDYLAQRDKEWMNPVFEFHGLSVGVILNTMRPEERREQ 225 (1025)
T ss_pred CccccCCCCCcchHhHHHHHHHHHc------CCCcE--EEeechHhhhhhHHHHHHHHHHhCCeeeeeCCCCCHHHHHHh
Confidence 4678889999999999998765554 33544 4455556887777777776 679999998765433
Q ss_pred -CCeeEEe---------------------ccc-----hhhhchHHHhcCCCCeEEEEecch
Q psy14082 83 -GPQDCLP---------------------LHR-----FVFNCQYEMAKNPAFKVIVFVETK 116 (233)
Q Consensus 83 -~~~~lv~---------------------l~r-----~~~~~~~~~~~~~~~k~iIf~~~~ 116 (233)
..+|.-| ..| ++|.+...+-.....|.||--+..
T Consensus 226 Y~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvLIDeARTPLIISgp~~ 286 (1025)
T PRK12900 226 YLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVLIDEARTPLIISGPVP 286 (1025)
T ss_pred CCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhhhccccCceEEeCCCC
Confidence 3333222 112 566666666666777888877633
No 314
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=90.18 E-value=0.71 Score=36.25 Aligned_cols=41 Identities=15% Similarity=0.032 Sum_probs=27.1
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCc
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPT 53 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~Pt 53 (233)
++.|.=+.+.+++|||||...+- ++..... .+.+++++.-.
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~-~~~~~~~-------~g~~v~yi~~e 49 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMI-LAVNAAR-------QGKKVVYIDTE 49 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHH-HHHHHHh-------CCCeEEEEECC
Confidence 35677789999999999966433 3333322 25567777764
No 315
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=89.99 E-value=2.2 Score=38.20 Aligned_cols=71 Identities=14% Similarity=0.150 Sum_probs=50.9
Q ss_pred CCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc-----Cc-CCcCCCCc
Q psy14082 106 AFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV-----AA-RGLDVEDV 175 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~-----~~-~Gldi~~v 175 (233)
..++|+.++|++-+.++.+.++.. ++.+..++|+.+...+. +.+..+..+|+|+|.. .. ..+.+.++
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~---~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l 238 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL---KQLEARFCDILVATPGRLLDFNQRGEVHLDMV 238 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHH---HHHhCCCCCEEEECHHHHHHHHHcCCcccccC
Confidence 468999999999999988877654 67888999998765544 3455677899999952 11 23445555
Q ss_pred cEEE
Q psy14082 176 NTVN 179 (233)
Q Consensus 176 ~~VI 179 (233)
++||
T Consensus 239 ~~lV 242 (475)
T PRK01297 239 EVMV 242 (475)
T ss_pred ceEE
Confidence 5554
No 316
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=89.85 E-value=1.6 Score=40.52 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=53.9
Q ss_pred CCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc
Q psy14082 106 AFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD 164 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~ 164 (233)
.+.++|.++++.-+......++..|+.+..+++..+.+++..++...+.|+.+++++|+
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 45799999999999999999999999999999999999999999999999999998884
No 317
>PRK10436 hypothetical protein; Provisional
Probab=89.84 E-value=0.43 Score=42.60 Aligned_cols=24 Identities=4% Similarity=-0.177 Sum_probs=18.6
Q ss_pred ceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
-+++.+|||||||.+ +..++..+.
T Consensus 220 liLvtGpTGSGKTTt-L~a~l~~~~ 243 (462)
T PRK10436 220 LILVTGPTGSGKTVT-LYSALQTLN 243 (462)
T ss_pred eEEEECCCCCChHHH-HHHHHHhhC
Confidence 478999999999976 556676664
No 318
>PRK08116 hypothetical protein; Validated
Probab=89.83 E-value=0.62 Score=38.48 Aligned_cols=47 Identities=9% Similarity=-0.101 Sum_probs=32.3
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVA 64 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~ 64 (233)
.-+++.+++|+|||.. +..+.+.+..+ +..++ ..+..+|..++...+
T Consensus 115 ~gl~l~G~~GtGKThL-a~aia~~l~~~-------~~~v~-~~~~~~ll~~i~~~~ 161 (268)
T PRK08116 115 VGLLLWGSVGTGKTYL-AACIANELIEK-------GVPVI-FVNFPQLLNRIKSTY 161 (268)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHHHc-------CCeEE-EEEHHHHHHHHHHHH
Confidence 3489999999999977 55677777643 33444 445667777765543
No 319
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.79 E-value=0.4 Score=40.53 Aligned_cols=44 Identities=11% Similarity=-0.114 Sum_probs=32.4
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQ 58 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~ 58 (233)
..+++++++++||||||.. +.+++..+- +..+.+.+=-|.|+..
T Consensus 141 e~~~siii~G~t~sGKTt~-lnall~~Ip--------~~~rivtIEdt~E~~~ 184 (312)
T COG0630 141 EARKSIIICGGTASGKTTL-LNALLDFIP--------PEERIVTIEDTPELKL 184 (312)
T ss_pred HcCCcEEEECCCCCCHHHH-HHHHHHhCC--------chhcEEEEeccccccC
Confidence 4688999999999999955 777777663 3445666666666643
No 320
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=89.70 E-value=9 Score=34.29 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=52.4
Q ss_pred CCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh-hc-CC-cEEEEEcC
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF-SS-AL-RNICIFGG 79 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~-~~-~~-~~~~~~gg 79 (233)
-++-.|+-+.+.|+.|+|||.. +..++.....+ ... +.|++--=|-...+.+-++.+ .. .+ ++.++.+.
T Consensus 138 ~pigkGQR~gIfa~~G~GKt~L-l~~~~~~~~~~-----~~d--v~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~at 209 (461)
T PRK12597 138 CPIAKGGKTGLFGGAGVGKTVL-MMELIFNISKQ-----HSG--SSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQ 209 (461)
T ss_pred CccccCCEEEeecCCCCChhHH-HHHHHHHHHhh-----CCC--EEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecC
Confidence 3566789999999999999976 33344444321 112 333443334445555555555 11 22 34445544
Q ss_pred CCCCCeeEEeccch-----hhhchHHHhcCCCCeEEEEecch
Q psy14082 80 TPKGPQDCLPLHRF-----VFNCQYEMAKNPAFKVIVFVETK 116 (233)
Q Consensus 80 ~~~~~~~lv~l~r~-----~~~~~~~~~~~~~~k~iIf~~~~ 116 (233)
.+..+- .|+ ---+.+++....+..++++..+.
T Consensus 210 sd~~~~-----~R~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 210 MNEPPG-----ARMRVVLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred CCCCHH-----HHHHHHHHHHHHHHHHHHhcCCceEEEeccc
Confidence 444321 121 11123345444477787777653
No 321
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=89.67 E-value=1.8 Score=42.79 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=52.7
Q ss_pred CCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhC--CCCCEEEecc
Q psy14082 106 AFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQ--GKAPILVATD 164 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~iLv~T~ 164 (233)
.+.+||.++++.-+..-...|...|+.+..+.++++..++.++++.+.. |++++|++|+
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 4689999999999986677777889999999999999999999999877 8899999996
No 322
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=89.61 E-value=3.7 Score=30.52 Aligned_cols=72 Identities=22% Similarity=0.366 Sum_probs=51.4
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHH-HHHHHHHHhhCCCCCEEEecc-----cCc-CCcCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQ-DRDYVLNDFRQGKAPILVATD-----VAA-RGLDV 172 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~-~r~~~~~~f~~g~~~iLv~T~-----~~~-~Gldi 172 (233)
.+..++++.++++..++...+.+.+. +.++..+|++.+.. +....+ .++.+|+|+|. ... ...++
T Consensus 42 ~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~~~~~~~~~ 117 (169)
T PF00270_consen 42 GKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDLISNGKINI 117 (169)
T ss_dssp TSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHHHHTTSSTG
T ss_pred CCCceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccccCcchhhcccccccccc
Confidence 35569999999999999999888764 35788889988855 333333 56789999993 222 23466
Q ss_pred CCccEEE
Q psy14082 173 EDVNTVN 179 (233)
Q Consensus 173 ~~v~~VI 179 (233)
..+++||
T Consensus 118 ~~~~~iV 124 (169)
T PF00270_consen 118 SRLSLIV 124 (169)
T ss_dssp TTESEEE
T ss_pred ccceeec
Confidence 6677665
No 323
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=89.56 E-value=6.4 Score=35.47 Aligned_cols=23 Identities=13% Similarity=-0.028 Sum_probs=19.2
Q ss_pred CCCCCCCCceeEecCCCCCchHH
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~ 24 (233)
+-++-+|+-..+.+..|+|||..
T Consensus 156 l~pigrGQR~~Ifg~~g~GKT~L 178 (497)
T TIGR03324 156 LIPIGRGQRELILGDRQTGKTAI 178 (497)
T ss_pred cCCcccCCEEEeecCCCCCHHHH
Confidence 34567899999999999999975
No 324
>PRK11823 DNA repair protein RadA; Provisional
Probab=89.52 E-value=0.71 Score=41.06 Aligned_cols=53 Identities=19% Similarity=0.155 Sum_probs=37.0
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
..|.-+++.+++|+|||.. ++-+...+.. .+.+++++. +.|-..|+....+++
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL-~lq~a~~~a~-------~g~~vlYvs-~Ees~~qi~~ra~rl 130 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTL-LLQVAARLAA-------AGGKVLYVS-GEESASQIKLRAERL 130 (446)
T ss_pred cCCEEEEEECCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEE-ccccHHHHHHHHHHc
Confidence 4577788999999999954 4444444432 255788876 456778888877777
No 325
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=89.49 E-value=8.6 Score=33.72 Aligned_cols=110 Identities=6% Similarity=0.087 Sum_probs=56.0
Q ss_pred CCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCC
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPK 82 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~ 82 (233)
-++=.|+-..+.|+.|+|||.. +--+.+.+..+ ..... ++++-..|--..+.+..+.+. + .++.+..+.
T Consensus 164 ~PIGkGQR~lIvgppGvGKTTL-aK~Ian~I~~n-----hFDv~-~~VvLIgER~~EVtdiqrsIl-g---~vv~st~d~ 232 (416)
T PRK09376 164 APIGKGQRGLIVAPPKAGKTVL-LQNIANSITTN-----HPEVH-LIVLLIDERPEEVTDMQRSVK-G---EVVASTFDE 232 (416)
T ss_pred cccccCceEEEeCCCCCChhHH-HHHHHHHHHhh-----cCCeE-EEEEEeCCchhHHHHHHHHhc-C---cEEEECCCC
Confidence 3566788889999999999954 55566655543 12333 333334444344444444442 1 233333333
Q ss_pred CCe--eEEeccchhhhchHHHhcCCCCeEEEEecchhHHHHHHHHH
Q psy14082 83 GPQ--DCLPLHRFVFNCQYEMAKNPAFKVIVFVETKKKVEDITRAL 126 (233)
Q Consensus 83 ~~~--~lv~l~r~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L 126 (233)
.+. ..++ ...+...+ .+. ..+..+++|..+......-....
T Consensus 233 ~~~~~~~~a-~~~ie~Ae-~~~-e~G~dVlL~iDsItR~arAqrev 275 (416)
T PRK09376 233 PAERHVQVA-EMVIEKAK-RLV-EHGKDVVILLDSITRLARAYNTV 275 (416)
T ss_pred CHHHHHHHH-HHHHHHHH-HHH-HcCCCEEEEEEChHHHHHHHHhh
Confidence 222 1110 00111112 222 56789999998866554444433
No 326
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=89.46 E-value=0.54 Score=40.56 Aligned_cols=28 Identities=4% Similarity=-0.155 Sum_probs=20.8
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhc
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISH 35 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~ 35 (233)
.+--+++.+|||||||.. +-.++..+..
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhh
Confidence 355689999999999966 5556666643
No 327
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=89.43 E-value=0.56 Score=35.90 Aligned_cols=46 Identities=7% Similarity=-0.037 Sum_probs=31.2
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
+++.+++||||| +|+.-++.. .+.++++++..+.+-..+.+.+.+.
T Consensus 2 ~li~G~~~sGKS-~~a~~~~~~----------~~~~~~y~at~~~~d~em~~rI~~H 47 (169)
T cd00544 2 ILVTGGARSGKS-RFAERLAAE----------LGGPVTYIATAEAFDDEMAERIARH 47 (169)
T ss_pred EEEECCCCCCHH-HHHHHHHHh----------cCCCeEEEEccCcCCHHHHHHHHHH
Confidence 478899999999 444433322 2457899988777766666665554
No 328
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=89.35 E-value=0.46 Score=40.40 Aligned_cols=127 Identities=9% Similarity=0.002 Sum_probs=63.4
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCCCCeeE
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPKGPQDC 87 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~~~~~l 87 (233)
.+++++++.||||||.. +-.+...+. ..-|++.+=-|.||-.+.-... .+..-..+....--
T Consensus 173 r~NILisGGTGSGKTTl-LNal~~~i~--------~~eRvItiEDtaELql~~ph~v---------rL~TR~~n~Eg~ge 234 (355)
T COG4962 173 RCNILISGGTGSGKTTL-LNALSGFID--------SDERVITIEDTAELQLAHPHVV---------RLETRPPNVEGTGE 234 (355)
T ss_pred ceeEEEeCCCCCCHHHH-HHHHHhcCC--------CcccEEEEeehhhhccCCCceE---------EEeecCCCCCCcce
Confidence 35899999999999965 333333332 2338898888888843321111 11111111111111
Q ss_pred EeccchhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHh-hCCCeeEEEeCCCCHHHHHHHHHHhhCCC
Q psy14082 88 LPLHRFVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALR-RERHSAICIHGDKTQQDRDYVLNDFRQGK 156 (233)
Q Consensus 88 v~l~r~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 156 (233)
|. +-++++..+...+..-.+-=|.- ..+..+.+.+. .+.=....+|+..+.+.-....+.+..+.
T Consensus 235 vt---m~dLvkn~LRmRPDRIiVGEVRG-~Ea~dLL~AmnTGHdG~~~TlHans~~ea~~rle~l~~~~~ 300 (355)
T COG4962 235 VT---MRDLVKNALRMRPDRIIVGEVRG-VEALDLLQAMNTGHDGGMGTLHANSPREALTRLEQLIAEGG 300 (355)
T ss_pred EE---HHHHHHHHhhcCccceEEEEecC-ccHHHHHHHhccCCCCcceeeccCCHHHHHHHHHHHHHhhc
Confidence 22 23444444444444433333332 33444444441 22225677898877776666665555443
No 329
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.34 E-value=0.54 Score=36.41 Aligned_cols=26 Identities=4% Similarity=-0.254 Sum_probs=19.1
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVH 32 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~ 32 (233)
..|..+++.++||||||.. +-.++..
T Consensus 23 ~~g~~i~I~G~tGSGKTTl-l~aL~~~ 48 (186)
T cd01130 23 EARKNILISGGTGSGKTTL-LNALLAF 48 (186)
T ss_pred hCCCEEEEECCCCCCHHHH-HHHHHhh
Confidence 3578899999999999965 3334433
No 330
>PRK04296 thymidine kinase; Provisional
Probab=89.31 E-value=0.48 Score=36.91 Aligned_cols=36 Identities=19% Similarity=0.139 Sum_probs=25.4
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcC
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAP 52 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~P 52 (233)
.=.++.+++|+|||.. ++-.+.++.. .+.+++++-|
T Consensus 3 ~i~litG~~GsGKTT~-~l~~~~~~~~-------~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTE-LLQRAYNYEE-------RGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHH-HHHHHHHHHH-------cCCeEEEEec
Confidence 3457788999999965 5556665543 3667888877
No 331
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=89.31 E-value=0.72 Score=41.47 Aligned_cols=55 Identities=16% Similarity=-0.032 Sum_probs=39.4
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
+++|+-+++.+++|||||.-.+--+.+.+.+ .+..+|+++- .|-..++.+.+..+
T Consensus 18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~-------~ge~~lyvs~-eE~~~~l~~~~~~~ 72 (484)
T TIGR02655 18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH-------FDEPGVFVTF-EESPQDIIKNARSF 72 (484)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEEEE-ecCHHHHHHHHHHc
Confidence 4678999999999999996644333443322 2456787774 47788888888888
No 332
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=89.31 E-value=0.16 Score=44.68 Aligned_cols=32 Identities=13% Similarity=-0.034 Sum_probs=25.2
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
||+-+..||-++.++||||||.+ +--+.+.+-
T Consensus 13 l~~~~~NRHGLIaGATGTGKTvT-LqvlAE~fS 44 (502)
T PF05872_consen 13 LPLKMANRHGLIAGATGTGKTVT-LQVLAEQFS 44 (502)
T ss_pred cChhhccccceeeccCCCCceeh-HHHHHHHhh
Confidence 67778899999999999999988 333555443
No 333
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=89.21 E-value=2.7 Score=36.72 Aligned_cols=135 Identities=8% Similarity=-0.003 Sum_probs=71.9
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEc--CcHHHHHHHHHHHHHhhcCCcEEEEEcCCCCCCe
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLA--PTRELAQQIQTVAKEFSSALRNICIFGGTPKGPQ 85 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~--PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~~~~ 85 (233)
++-+...+|||.|||.+-+- +..+.... .+..++-||+ ..|-=|....+.+.+. .++.+...+...+-..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAK-LAar~~~~-----~~~~kVaiITtDtYRIGA~EQLk~Ya~i-m~vp~~vv~~~~el~~- 274 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAK-LAARYVML-----KKKKKVAIITTDTYRIGAVEQLKTYADI-MGVPLEVVYSPKELAE- 274 (407)
T ss_pred CcEEEEECCCCCcHHHHHHH-HHHHHHhh-----ccCcceEEEEeccchhhHHHHHHHHHHH-hCCceEEecCHHHHHH-
Confidence 67788999999999987443 22222211 1233344443 3343333333333332 2444444443322111
Q ss_pred eEEeccchhhhchHHHhcCCCCeEEEEecch-------hHHHHHHHHHhhC-CC-eeEEEeCCCCHHHHHHHHHHhhCCC
Q psy14082 86 DCLPLHRFVFNCQYEMAKNPAFKVIVFVETK-------KKVEDITRALRRE-RH-SAICIHGDKTQQDRDYVLNDFRQGK 156 (233)
Q Consensus 86 ~lv~l~r~~~~~~~~~~~~~~~k~iIf~~~~-------~~~~~l~~~L~~~-~~-~~~~~~~~~~~~~r~~~~~~f~~g~ 156 (233)
.+. .-...=+|++.|. ...+++...+..- .+ ...++...+..++-.++++.|+.-.
T Consensus 275 ----------ai~-----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~ 339 (407)
T COG1419 275 ----------AIE-----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFP 339 (407)
T ss_pred ----------HHH-----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCC
Confidence 000 0111235666664 3334444444322 33 3456677888899999999999988
Q ss_pred CCEEEeccc
Q psy14082 157 APILVATDV 165 (233)
Q Consensus 157 ~~iLv~T~~ 165 (233)
++-+|-|-+
T Consensus 340 i~~~I~TKl 348 (407)
T COG1419 340 IDGLIFTKL 348 (407)
T ss_pred cceeEEEcc
Confidence 888888743
No 334
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=89.20 E-value=0.5 Score=37.08 Aligned_cols=134 Identities=13% Similarity=0.047 Sum_probs=60.3
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEc--CcHHHHHHHHHHHHHhhcCCcEEEEEcCCCCCCeeEE
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLA--PTRELAQQIQTVAKEFSSALRNICIFGGTPKGPQDCL 88 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~--PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~~~~~lv 88 (233)
++..+|||+|||.+. .=+..++..+ +.++.+++ ..|.=+.+ +++.+...+.+-........++.
T Consensus 4 i~lvGptGvGKTTt~-aKLAa~~~~~-------~~~v~lis~D~~R~ga~e---QL~~~a~~l~vp~~~~~~~~~~~--- 69 (196)
T PF00448_consen 4 IALVGPTGVGKTTTI-AKLAARLKLK-------GKKVALISADTYRIGAVE---QLKTYAEILGVPFYVARTESDPA--- 69 (196)
T ss_dssp EEEEESTTSSHHHHH-HHHHHHHHHT-------T--EEEEEESTSSTHHHH---HHHHHHHHHTEEEEESSTTSCHH---
T ss_pred EEEECCCCCchHhHH-HHHHHHHhhc-------cccceeecCCCCCccHHH---HHHHHHHHhccccchhhcchhhH---
Confidence 577899999999873 3344444332 33455554 33433333 33333222333333322222221
Q ss_pred eccchhhhchHH---HhcCCCCeEEEEecch-----hHHHHHHHHHhhC-CC-eeEEEeCCCCHHHHHHHHHHhhCCCCC
Q psy14082 89 PLHRFVFNCQYE---MAKNPAFKVIVFVETK-----KKVEDITRALRRE-RH-SAICIHGDKTQQDRDYVLNDFRQGKAP 158 (233)
Q Consensus 89 ~l~r~~~~~~~~---~~~~~~~k~iIf~~~~-----~~~~~l~~~L~~~-~~-~~~~~~~~~~~~~r~~~~~~f~~g~~~ 158 (233)
++..+. .......-++|=+.-+ ...+++.+.+... .. ...++.+.+.+++-..+.+.+....+.
T Consensus 70 ------~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~ 143 (196)
T PF00448_consen 70 ------EIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGID 143 (196)
T ss_dssp ------HHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTC
T ss_pred ------HHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCc
Confidence 111111 1122223334433321 2234444444332 33 334556666666666555555555677
Q ss_pred EEEecc
Q psy14082 159 ILVATD 164 (233)
Q Consensus 159 iLv~T~ 164 (233)
-+|-|.
T Consensus 144 ~lIlTK 149 (196)
T PF00448_consen 144 GLILTK 149 (196)
T ss_dssp EEEEES
T ss_pred eEEEEe
Confidence 677764
No 335
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=89.20 E-value=0.3 Score=42.02 Aligned_cols=28 Identities=7% Similarity=-0.123 Sum_probs=20.6
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
++|+-++..+|+|||||+. ++++.+.|-
T Consensus 48 ~aGr~iLiaGppGtGKTAl-A~~ia~eLG 75 (398)
T PF06068_consen 48 IAGRAILIAGPPGTGKTAL-AMAIAKELG 75 (398)
T ss_dssp -TT-EEEEEE-TTSSHHHH-HHHHHHHCT
T ss_pred ccCcEEEEeCCCCCCchHH-HHHHHHHhC
Confidence 5799999999999999966 676776664
No 336
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=89.15 E-value=0.44 Score=40.79 Aligned_cols=42 Identities=5% Similarity=-0.100 Sum_probs=29.0
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHH
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELA 57 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~ 57 (233)
.+..+++.++||||||.. +-.++..+. ...+.+.+--+.||.
T Consensus 177 ~~~~ili~G~tGsGKTTl-l~al~~~i~--------~~~riv~iEd~~El~ 218 (340)
T TIGR03819 177 ARLAFLISGGTGSGKTTL-LSALLALVA--------PDERIVLVEDAAELR 218 (340)
T ss_pred CCCeEEEECCCCCCHHHH-HHHHHccCC--------CCCcEEEECCcceec
Confidence 467899999999999954 444444331 234577777777874
No 337
>KOG1533|consensus
Probab=89.09 E-value=0.45 Score=38.38 Aligned_cols=24 Identities=8% Similarity=-0.168 Sum_probs=19.0
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhc
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISH 35 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~ 35 (233)
.++++|+||||| +|..-+.+.+..
T Consensus 5 qvVIGPPgSGKs-TYc~g~~~fls~ 28 (290)
T KOG1533|consen 5 QVVIGPPGSGKS-TYCNGMSQFLSA 28 (290)
T ss_pred eEEEcCCCCCcc-chhhhHHHHHHH
Confidence 478999999999 778777766654
No 338
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=89.05 E-value=7 Score=35.12 Aligned_cols=22 Identities=9% Similarity=-0.084 Sum_probs=19.0
Q ss_pred CCCCCCCceeEecCCCCCchHH
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~ 24 (233)
-++-+|+-..+.+..|+|||..
T Consensus 136 ~pigrGQR~~I~g~~g~GKt~L 157 (485)
T CHL00059 136 IPIGRGQRELIIGDRQTGKTAV 157 (485)
T ss_pred cccccCCEEEeecCCCCCHHHH
Confidence 3567889999999999999976
No 339
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=88.99 E-value=0.38 Score=41.19 Aligned_cols=28 Identities=7% Similarity=-0.166 Sum_probs=23.3
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
++|+-++..+|+|||||+. ++.+.+-|-
T Consensus 63 ~aGrgiLi~GppgTGKTAl-A~gIa~eLG 90 (450)
T COG1224 63 MAGRGILIVGPPGTGKTAL-AMGIARELG 90 (450)
T ss_pred ccccEEEEECCCCCcHHHH-HHHHHHHhC
Confidence 6799999999999999966 676776664
No 340
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.95 E-value=0.2 Score=37.93 Aligned_cols=38 Identities=21% Similarity=0.152 Sum_probs=24.9
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHH
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQI 60 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~ 60 (233)
.|+.++.|||||..|.......+ + ..+.+.+-|+|.|+
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~~~----------~--~~~~VN~D~iA~~i 42 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAPLL----------P--GIVFVNADEIAAQI 42 (187)
T ss_pred EEEecCCCCCceeeeeccchhhc----------C--CeEEECHHHHhhhc
Confidence 46789999999998876444322 1 45566666666554
No 341
>PRK09401 reverse gyrase; Reviewed
Probab=88.91 E-value=1.5 Score=43.84 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=48.8
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCC----CeeEEE--eCCCCHHHHHHHHHHhhCCCCCEEEecc
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRER----HSAICI--HGDKTQQDRDYVLNDFRQGKAPILVATD 164 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~----~~~~~~--~~~~~~~~r~~~~~~f~~g~~~iLv~T~ 164 (233)
.+.+++|.++|+.-+.++++.+++.+ ..+..+ |++++.+++.+..+.+++|..+|+|+|.
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp 187 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTS 187 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECH
Confidence 57899999999999999999998653 344434 4556678888888999999999999993
No 342
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=88.91 E-value=0.21 Score=41.29 Aligned_cols=25 Identities=4% Similarity=-0.229 Sum_probs=19.2
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAV 31 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~ 31 (233)
-+++.+++.+|||+|||.. +--.++
T Consensus 31 ~~~~pvLl~G~~GtGKT~l-i~~~l~ 55 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSL-IQNFLS 55 (272)
T ss_dssp HCTEEEEEESSTTSSHHHH-HHHHHH
T ss_pred HcCCcEEEECCCCCchhHH-HHhhhc
Confidence 3688899999999999976 333443
No 343
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=88.91 E-value=0.51 Score=38.88 Aligned_cols=24 Identities=4% Similarity=-0.139 Sum_probs=18.6
Q ss_pred ceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
-+++.++||||||.. +-.+++.+.
T Consensus 82 lilisG~tGSGKTT~-l~all~~i~ 105 (264)
T cd01129 82 IILVTGPTGSGKTTT-LYSALSELN 105 (264)
T ss_pred EEEEECCCCCcHHHH-HHHHHhhhC
Confidence 488999999999965 566666663
No 344
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=88.87 E-value=1.2 Score=35.67 Aligned_cols=54 Identities=4% Similarity=-0.159 Sum_probs=35.5
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
++.|.=+++.+++|+|||.- +.-++.... .++.+++++.-. +-..++.+.+..+
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l-~~~~~~~~~-------~~g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVL-SQQFVYGAL-------KQGKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CcCCcEEEEECCCCCChHHH-HHHHHHHHH-------hCCCEEEEEEcC-CCHHHHHHHHHHC
Confidence 46788899999999999955 333333222 235567776653 4556777777776
No 345
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=88.85 E-value=0.22 Score=35.71 Aligned_cols=26 Identities=8% Similarity=-0.277 Sum_probs=15.5
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.++-+++.+++|+|||.. +--+...+
T Consensus 3 ~~~~~~i~G~~G~GKT~~-~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTL-IKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHH-HHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHH-HHHHHHHh
Confidence 356689999999999976 44444444
No 346
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=88.84 E-value=1 Score=40.01 Aligned_cols=49 Identities=6% Similarity=-0.059 Sum_probs=32.1
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVA 64 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~ 64 (233)
+.+++.+++|+|||.. +-.+.+.+.++ ..+.+++++ +..++..+....+
T Consensus 149 ~~l~l~G~~G~GKThL-~~ai~~~~~~~-----~~~~~v~yi-~~~~~~~~~~~~~ 197 (450)
T PRK00149 149 NPLFIYGGVGLGKTHL-LHAIGNYILEK-----NPNAKVVYV-TSEKFTNDFVNAL 197 (450)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHh-----CCCCeEEEE-EHHHHHHHHHHHH
Confidence 4588999999999976 55666666543 235566665 5456665554443
No 347
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=88.83 E-value=1.2 Score=44.34 Aligned_cols=55 Identities=9% Similarity=-0.082 Sum_probs=41.8
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
.+.+++.|+-|||||.+-.--++..+... .....+++|+-|+.-|..+.+++...
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~-----~~~~~i~~~t~t~~aa~em~~Ri~~~ 64 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNG-----VPPSKILCLTYTKAAAAEMQNRVFDR 64 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcC-----CCCCeEEEEecCHHHHHHHHHHHHHH
Confidence 35689999999999988655555555432 12347999999999999988888766
No 348
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=88.82 E-value=1 Score=39.37 Aligned_cols=48 Identities=6% Similarity=-0.033 Sum_probs=31.4
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTV 63 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~ 63 (233)
+-+++.+++|+|||.. +..+.+.+.++ ..+.+++++. ..++..++...
T Consensus 137 n~l~l~G~~G~GKThL-~~ai~~~l~~~-----~~~~~v~yi~-~~~~~~~~~~~ 184 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHL-LHAIGNEILEN-----NPNAKVVYVS-SEKFTNDFVNA 184 (405)
T ss_pred CeEEEECCCCCcHHHH-HHHHHHHHHHh-----CCCCcEEEEE-HHHHHHHHHHH
Confidence 4578999999999976 56667666543 2345677764 44555554443
No 349
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=88.81 E-value=0.58 Score=37.38 Aligned_cols=48 Identities=15% Similarity=0.065 Sum_probs=31.4
Q ss_pred ceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVA 64 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~ 64 (233)
-+++.+++|+|||.. +-++.+.+.+. .++.+++++.. .+......+.+
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~-----~~~~~v~y~~~-~~f~~~~~~~~ 83 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQ-----HPGKRVVYLSA-EEFIREFADAL 83 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHH-----CTTS-EEEEEH-HHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhc-----cccccceeecH-HHHHHHHHHHH
Confidence 479999999999985 66677766654 34667777654 35555444433
No 350
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=88.75 E-value=0.58 Score=38.40 Aligned_cols=54 Identities=9% Similarity=-0.080 Sum_probs=32.8
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
..|.-+++.++||+|||.. +.-+...+..+ .+..++++.- -+-..++...+...
T Consensus 28 ~~g~~~~i~g~~G~GKT~l-~~~~~~~~~~~------~g~~vl~iS~-E~~~~~~~~r~~~~ 81 (271)
T cd01122 28 RKGELIILTAGTGVGKTTF-LREYALDLITQ------HGVRVGTISL-EEPVVRTARRLLGQ 81 (271)
T ss_pred cCCcEEEEEcCCCCCHHHH-HHHHHHHHHHh------cCceEEEEEc-ccCHHHHHHHHHHH
Confidence 4577788999999999954 44444444321 2566777763 23345555555443
No 351
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=88.47 E-value=1.5 Score=38.19 Aligned_cols=53 Identities=6% Similarity=-0.049 Sum_probs=41.5
Q ss_pred ceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHH-HHHHHHHHHHHh
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRE-LAQQIQTVAKEF 67 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~Ptre-L~~Q~~~~~~~~ 67 (233)
-.+..+..|||||.+.+.-++..++.. .++.+++++-|+.. |..-++..+...
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-----~~~~~~~~~r~~~~sl~~sv~~~l~~~ 56 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-----KKQQNILAARKVQNSIRDSVFKDIENL 56 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-----CCCcEEEEEehhhhHHHHHHHHHHHHH
Confidence 467889999999999888888888764 14678999989887 666667776654
No 352
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=88.47 E-value=1.1 Score=37.36 Aligned_cols=52 Identities=6% Similarity=0.030 Sum_probs=28.3
Q ss_pred cCCCCeEEEEecchhHHHHHH---HHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCC
Q psy14082 103 KNPAFKVIVFVETKKKVEDIT---RALRRERHSAICIHGDKTQQDRDYVLNDFRQG 155 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~---~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 155 (233)
.....-.+|++.+.+..+.+. ..|..+ +...+.-..++.+++..+++.|-..
T Consensus 156 ~~~~~~~vI~a~~~~~~~~~~~~np~L~sR-~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 156 NQRDDLVVILAGYKDRMDSFFESNPGFSSR-VAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred cCCCCEEEEEeCCcHHHHHHHhhCHHHHhh-CCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 334455677776655444432 222222 1222334556788888888887544
No 353
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=88.39 E-value=6.1 Score=32.26 Aligned_cols=21 Identities=10% Similarity=-0.012 Sum_probs=17.8
Q ss_pred CCCCCCceeEecCCCCCchHH
Q psy14082 4 PSESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 4 ~~~~g~d~i~~a~tGsGKT~~ 24 (233)
++-.|.-+.+.++.|+|||..
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHH
Confidence 456788999999999999953
No 354
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=88.36 E-value=1.2 Score=39.59 Aligned_cols=49 Identities=10% Similarity=-0.065 Sum_probs=31.9
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVA 64 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~ 64 (233)
+-+++.+++|+|||.. +-.+.+.+... .++.+++++.+ .++..++.+.+
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~-----~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESN-----FSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHh-----CCCCeEEEEEH-HHHHHHHHHHH
Confidence 4588999999999955 45566655543 33566766554 56666655443
No 355
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=88.34 E-value=2 Score=38.36 Aligned_cols=71 Identities=23% Similarity=0.293 Sum_probs=55.1
Q ss_pred eEEEEecchhHHHHHHHHHhhC-CC---eeEEEeCCCCHHHHHHHHHHhhCCCCCEEEec------ccCcCCcCCCCccE
Q psy14082 108 KVIVFVETKKKVEDITRALRRE-RH---SAICIHGDKTQQDRDYVLNDFRQGKAPILVAT------DVAARGLDVEDVNT 177 (233)
Q Consensus 108 k~iIf~~~~~~~~~l~~~L~~~-~~---~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T------~~~~~Gldi~~v~~ 177 (233)
++|+..+|+--+.+-+..+.+- ++ .+..++|..++++|.+.+.. .+|.|+| |+.+-=+|+.++.+
T Consensus 60 kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~-----~kVfvaTPQvveNDl~~Grid~~dv~~ 134 (542)
T COG1111 60 KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAK-----KKVFVATPQVVENDLKAGRIDLDDVSL 134 (542)
T ss_pred eEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhh-----CCEEEeccHHHHhHHhcCccChHHceE
Confidence 8999999997777766666542 44 56799999999999998774 6899999 44444499999998
Q ss_pred EEEecCC
Q psy14082 178 VNIGSLQ 184 (233)
Q Consensus 178 VI~~d~P 184 (233)
+| ||--
T Consensus 135 li-fDEA 140 (542)
T COG1111 135 LI-FDEA 140 (542)
T ss_pred EE-echh
Confidence 87 5543
No 356
>PF05729 NACHT: NACHT domain
Probab=88.32 E-value=0.9 Score=33.70 Aligned_cols=25 Identities=4% Similarity=-0.146 Sum_probs=19.1
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhcc
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISHQ 36 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~~ 36 (233)
+++.+++|+|||.. +--++..+...
T Consensus 3 l~I~G~~G~GKStl-l~~~~~~~~~~ 27 (166)
T PF05729_consen 3 LWISGEPGSGKSTL-LRKLAQQLAEE 27 (166)
T ss_pred EEEECCCCCChHHH-HHHHHHHHHhc
Confidence 68899999999965 55666666554
No 357
>KOG1807|consensus
Probab=88.07 E-value=0.89 Score=42.60 Aligned_cols=70 Identities=11% Similarity=-0.143 Sum_probs=45.1
Q ss_pred ceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCCC
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPKG 83 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~~ 83 (233)
-.++++|+|+|||++- +-+++.++.+....... -..|+.|-|..-++|....+.. .+-...+..|+...+
T Consensus 395 lsliqgppGTgkt~vt-lkav~tLL~n~s~~~~~-epIlvvC~Tnhavdq~ligiy~--~qrpsImr~gsr~~s 464 (1025)
T KOG1807|consen 395 LSLIQGPPGTGKTLVT-LKAVDTLLLNSSGYTEP-EPILVVCLTNHAVDQYLIGIYY--HQRPSIMRQGSRFFS 464 (1025)
T ss_pred hheeecCCCCCceeeh-HHHHHHHHhcccccccc-cceeeeehhhHHHHHHHHHHHh--cCCceEEEeccccCC
Confidence 3588999999999994 45777777765333222 3368889888888887666643 122334445554443
No 358
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=87.94 E-value=0.39 Score=39.35 Aligned_cols=28 Identities=7% Similarity=-0.299 Sum_probs=19.7
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.....+++..+|+|||||.. +-.+...+
T Consensus 39 ~~~~~~vll~GppGtGKTtl-A~~ia~~l 66 (261)
T TIGR02881 39 SKQVLHMIFKGNPGTGKTTV-ARILGKLF 66 (261)
T ss_pred CCCcceEEEEcCCCCCHHHH-HHHHHHHH
Confidence 34567899999999999966 33344333
No 359
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=87.87 E-value=0.84 Score=35.79 Aligned_cols=27 Identities=0% Similarity=-0.215 Sum_probs=17.9
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhc
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISH 35 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~ 35 (233)
..++++.++||||||.+ +..++..+..
T Consensus 38 ~~h~li~G~tgsGKS~~-l~~ll~~l~~ 64 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTL-LRTLLLSLAL 64 (205)
T ss_dssp S-SEEEE--TTSSHHHH-HHHHHHHHHT
T ss_pred CceEEEEcCCCCCccHH-HHHHHHHHHH
Confidence 34899999999999976 5555555554
No 360
>KOG1942|consensus
Probab=87.74 E-value=0.51 Score=39.39 Aligned_cols=28 Identities=7% Similarity=-0.110 Sum_probs=23.7
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
++|+.++..+|+|+|||+. ++++.+.+-
T Consensus 62 maGravLlaGppgtGKTAl-AlaisqELG 89 (456)
T KOG1942|consen 62 MAGRAVLLAGPPGTGKTAL-ALAISQELG 89 (456)
T ss_pred ccCcEEEEecCCCCchhHH-HHHHHHHhC
Confidence 6799999999999999966 777777664
No 361
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=87.71 E-value=1.3 Score=32.67 Aligned_cols=38 Identities=13% Similarity=0.012 Sum_probs=23.6
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHH
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTREL 56 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL 56 (233)
+++.+++|+|||.. +.-++..... .+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l-~~~i~~~~~~-------~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTL-ALQLALNIAT-------KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHH-HHHHHHHHHh-------cCCEEEEEECCcch
Confidence 57899999999965 4434443322 35567777654333
No 362
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=87.68 E-value=12 Score=33.35 Aligned_cols=100 Identities=13% Similarity=0.146 Sum_probs=52.5
Q ss_pred CCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh-h-cCC-cEEEEEcC
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF-S-SAL-RNICIFGG 79 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~-~-~~~-~~~~~~gg 79 (233)
-++-.|+-+.+.++.|+|||.. +.-++.....+ .. -+.|++--=|-...+.+.++.+ . ..+ ++.++.+.
T Consensus 133 ~pigkGQr~~Ifg~~G~GKt~l-~~~~~~~~~~~-----~~--~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~t 204 (449)
T TIGR03305 133 VPLERGGKAGLFGGAGVGKTVL-LTEMIHNMVGQ-----HQ--GVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQ 204 (449)
T ss_pred cccccCCEEEeecCCCCChhHH-HHHHHHHHHhc-----CC--CEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeC
Confidence 3567899999999999999966 44344333211 11 2344444434455555555555 1 122 34445544
Q ss_pred CCCCCeeEEeccchh-----hhchHHHhcCCCCeEEEEecc
Q psy14082 80 TPKGPQDCLPLHRFV-----FNCQYEMAKNPAFKVIVFVET 115 (233)
Q Consensus 80 ~~~~~~~lv~l~r~~-----~~~~~~~~~~~~~k~iIf~~~ 115 (233)
.+..+- .|+. --+.+++....+..++++..+
T Consensus 205 s~~~~~-----~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ds 240 (449)
T TIGR03305 205 MNEPPG-----ARFRVGHTALTMAEYFRDDEKQDVLLLIDN 240 (449)
T ss_pred CCCCHH-----HHHHHHHHHHHHHHHHHHhcCCceEEEecC
Confidence 444321 1211 112335554466777777765
No 363
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=87.56 E-value=0.44 Score=41.34 Aligned_cols=38 Identities=8% Similarity=-0.008 Sum_probs=28.5
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCc
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPT 53 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~Pt 53 (233)
.|+-.++.+.+||||| .|.+-++..+... .-+++|+++
T Consensus 9 ~G~TLLIKG~PGTGKT-tfaLelL~~l~~~--------~~v~YISTR 46 (484)
T PF07088_consen 9 PGQTLLIKGEPGTGKT-TFALELLNSLKDH--------GNVMYISTR 46 (484)
T ss_pred CCcEEEEecCCCCCce-eeehhhHHHHhcc--------CCeEEEEec
Confidence 4788999999999999 6688888877543 235666654
No 364
>KOG1132|consensus
Probab=87.55 E-value=1.5 Score=41.63 Aligned_cols=26 Identities=0% Similarity=-0.171 Sum_probs=19.8
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVH 32 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~ 32 (233)
+..+.+..+|||||||++-+...+..
T Consensus 39 ~~q~~llESPTGTGKSLsLLCS~LAW 64 (945)
T KOG1132|consen 39 RKQNGLLESPTGTGKSLSLLCSTLAW 64 (945)
T ss_pred HhhhhhccCCCCCCccHHHHHHHHHH
Confidence 45678999999999998866544433
No 365
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=87.49 E-value=1.2 Score=29.78 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=32.4
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKT 141 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 141 (233)
....++++||.+-..+...+..|++.|+++..+.|+++
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 34578999999888888899999999998888999875
No 366
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=87.47 E-value=15 Score=32.18 Aligned_cols=32 Identities=9% Similarity=0.052 Sum_probs=23.9
Q ss_pred eEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc
Q psy14082 133 AICIHGDKTQQDRDYVLNDFRQGKAPILVATD 164 (233)
Q Consensus 133 ~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~ 164 (233)
+.++..++...+-..+++.|..-...-+|-|-
T Consensus 320 ~LVLsag~~~~d~~~i~~~f~~l~i~glI~TK 351 (407)
T PRK12726 320 CFTFSSGMKSADVMTILPKLAEIPIDGFIITK 351 (407)
T ss_pred EEECCCcccHHHHHHHHHhcCcCCCCEEEEEc
Confidence 34556677888888888889877777777773
No 367
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=87.43 E-value=0.33 Score=35.41 Aligned_cols=23 Identities=4% Similarity=-0.311 Sum_probs=16.4
Q ss_pred ceeEecCCCCCchHHhHHHHHHhh
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
++++.+++|+|||.. +--+...+
T Consensus 1 ~vlL~G~~G~GKt~l-~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTL-ARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHHHH-HHHHHHHH
T ss_pred CEEEECCCCCCHHHH-HHHHHHHh
Confidence 478999999999966 33344433
No 368
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=87.32 E-value=8.9 Score=34.06 Aligned_cols=20 Identities=5% Similarity=-0.318 Sum_probs=16.5
Q ss_pred CCCCCceeEecCCCCCchHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~ 24 (233)
+-.|.-+.+.+++|+|||..
T Consensus 159 i~~GqrigI~G~sG~GKSTL 178 (444)
T PRK08972 159 VGKGQRMGLFAGSGVGKSVL 178 (444)
T ss_pred EcCCCEEEEECCCCCChhHH
Confidence 34677888999999999965
No 369
>PRK05642 DNA replication initiation factor; Validated
Probab=87.27 E-value=1.5 Score=35.39 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=28.0
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHH
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQI 60 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~ 60 (233)
+.+++.+++|+|||.. +-.+.+.+.. .+.+++++. ..++....
T Consensus 46 ~~l~l~G~~G~GKTHL-l~a~~~~~~~-------~~~~v~y~~-~~~~~~~~ 88 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL-LQAACLRFEQ-------RGEPAVYLP-LAELLDRG 88 (234)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHh-------CCCcEEEee-HHHHHhhh
Confidence 4578999999999966 4445554432 245666654 46776554
No 370
>PTZ00301 uridine kinase; Provisional
Probab=87.26 E-value=0.91 Score=36.05 Aligned_cols=22 Identities=0% Similarity=-0.369 Sum_probs=15.1
Q ss_pred eEecCCCCCchHHhHHHHHHhhh
Q psy14082 12 FSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 12 i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
-+.+++|||||.. +-.+.+.+.
T Consensus 7 gIaG~SgSGKTTl-a~~l~~~l~ 28 (210)
T PTZ00301 7 GISGASGSGKSSL-STNIVSELM 28 (210)
T ss_pred EEECCCcCCHHHH-HHHHHHHHH
Confidence 4567899999954 555555554
No 371
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=87.20 E-value=0.99 Score=37.54 Aligned_cols=26 Identities=8% Similarity=-0.150 Sum_probs=18.3
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.+.-+.+.+|||+|||.+ +.-+...+
T Consensus 193 ~~~vi~~vGptGvGKTTt-~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTT-LAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHH
Confidence 456788899999999976 33344444
No 372
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=87.20 E-value=0.47 Score=43.52 Aligned_cols=24 Identities=4% Similarity=-0.198 Sum_probs=18.6
Q ss_pred ceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
-+++.+|||||||.+ +..++..+.
T Consensus 318 lilv~G~tGSGKTTt-l~a~l~~~~ 341 (564)
T TIGR02538 318 MVLVTGPTGSGKTVS-LYTALNILN 341 (564)
T ss_pred eEEEECCCCCCHHHH-HHHHHHhhC
Confidence 367999999999976 556776664
No 373
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.08 E-value=21 Score=31.57 Aligned_cols=134 Identities=12% Similarity=0.080 Sum_probs=65.0
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcC--cH-HHHHHHHHHHHHhhcCCcEEEEEcCCCCCC
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAP--TR-ELAQQIQTVAKEFSSALRNICIFGGTPKGP 84 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~P--tr-eL~~Q~~~~~~~~~~~~~~~~~~gg~~~~~ 84 (233)
++.+.+.++||+|||.+... +...+.. .+.++.++.. -| .-+.|+....... ++.+. ... ++
T Consensus 241 ~~vI~LVGptGvGKTTTiaK-LA~~L~~-------~GkkVglI~aDt~RiaAvEQLk~yae~l--gipv~--v~~---d~ 305 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAK-MAWQFHG-------KKKTVGFITTDHSRIGTVQQLQDYVKTI--GFEVI--AVR---DE 305 (436)
T ss_pred CcEEEEECCCCCcHHHHHHH-HHHHHHH-------cCCcEEEEecCCcchHHHHHHHHHhhhc--CCcEE--ecC---CH
Confidence 46788999999999976333 4334432 2445555543 33 3444544333322 22222 111 11
Q ss_pred eeEEeccchhhhchHHHhcCCCCeEEEEecch-------hHHHHHHHHHhhCC-Cee-EEEeCCCCHHHHHHHHHHhhCC
Q psy14082 85 QDCLPLHRFVFNCQYEMAKNPAFKVIVFVETK-------KKVEDITRALRRER-HSA-ICIHGDKTQQDRDYVLNDFRQG 155 (233)
Q Consensus 85 ~~lv~l~r~~~~~~~~~~~~~~~k~iIf~~~~-------~~~~~l~~~L~~~~-~~~-~~~~~~~~~~~r~~~~~~f~~g 155 (233)
. .+.+.+.. +... ...-+||+.|. ....++...+.... ..+ .++.+.+...+-..+++.|+.-
T Consensus 306 ~------~L~~aL~~-lk~~-~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~~ 377 (436)
T PRK11889 306 A------AMTRALTY-FKEE-ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDI 377 (436)
T ss_pred H------HHHHHHHH-HHhc-cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcCC
Confidence 1 01111111 1110 11223444332 23445555554322 223 3355556667777899999887
Q ss_pred CCCEEEecc
Q psy14082 156 KAPILVATD 164 (233)
Q Consensus 156 ~~~iLv~T~ 164 (233)
.+.-+|-|-
T Consensus 378 ~idglI~TK 386 (436)
T PRK11889 378 HIDGIVFTK 386 (436)
T ss_pred CCCEEEEEc
Confidence 777777773
No 374
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=87.03 E-value=1.2 Score=39.48 Aligned_cols=49 Identities=4% Similarity=-0.083 Sum_probs=32.2
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVA 64 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~ 64 (233)
+.+++.+++|+|||.. +-.+.+.+.+. ..+.+++++.. .++..+..+.+
T Consensus 131 n~l~lyG~~G~GKTHL-l~ai~~~l~~~-----~~~~~v~yi~~-~~f~~~~~~~~ 179 (440)
T PRK14088 131 NPLFIYGGVGLGKTHL-LQSIGNYVVQN-----EPDLRVMYITS-EKFLNDLVDSM 179 (440)
T ss_pred CeEEEEcCCCCcHHHH-HHHHHHHHHHh-----CCCCeEEEEEH-HHHHHHHHHHH
Confidence 4589999999999976 56677766543 23456676654 45555554433
No 375
>KOG1133|consensus
Probab=86.96 E-value=0.57 Score=43.25 Aligned_cols=23 Identities=9% Similarity=0.186 Sum_probs=10.8
Q ss_pred CeEEEEecchhHHHHHHHHHhhC
Q psy14082 107 FKVIVFVETKKKVEDITRALRRE 129 (233)
Q Consensus 107 ~k~iIf~~~~~~~~~l~~~L~~~ 129 (233)
+-+++|+++-+-...+.+...+.
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~ 652 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQN 652 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhc
Confidence 34455555544444444444433
No 376
>PRK06893 DNA replication initiation factor; Validated
Probab=86.94 E-value=0.8 Score=36.79 Aligned_cols=34 Identities=6% Similarity=-0.137 Sum_probs=22.7
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcC
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAP 52 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~P 52 (233)
+++.+|+|+|||.. +..+.+.+..+ +..+.++..
T Consensus 42 l~l~G~~G~GKThL-~~ai~~~~~~~-------~~~~~y~~~ 75 (229)
T PRK06893 42 FYIWGGKSSGKSHL-LKAVSNHYLLN-------QRTAIYIPL 75 (229)
T ss_pred EEEECCCCCCHHHH-HHHHHHHHHHc-------CCCeEEeeH
Confidence 68999999999966 45555555432 445666544
No 377
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=86.92 E-value=22 Score=32.07 Aligned_cols=54 Identities=11% Similarity=0.052 Sum_probs=34.2
Q ss_pred eeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCC
Q psy14082 132 SAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQL 185 (233)
Q Consensus 132 ~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~ 185 (233)
...++...+....-.++.+.|+.....-+|-|.+-+..---.-+++++.+++|-
T Consensus 368 ~~LVLdAt~~~~~l~~i~~~f~~~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI 421 (484)
T PRK06995 368 RLLLLNATSHGDTLNEVVQAYRGPGLAGCILTKLDEAASLGGALDVVIRYKLPL 421 (484)
T ss_pred eEEEEeCCCcHHHHHHHHHHhccCCCCEEEEeCCCCcccchHHHHHHHHHCCCe
Confidence 446667777788888899999988777777775433211112344555566664
No 378
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=86.87 E-value=19 Score=32.21 Aligned_cols=101 Identities=14% Similarity=0.134 Sum_probs=50.8
Q ss_pred CCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh-hcC-C-cEEEEEcC
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF-SSA-L-RNICIFGG 79 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~-~~~-~-~~~~~~gg 79 (233)
-++-.|+-+.+.++.|+|||.. +..++...... .+. +.|++--=|-...+.+-++.+ ..+ + +..++.+.
T Consensus 138 ~pig~GQr~~If~~~G~GKt~L-~~~~~~~~~~~-----~~~--v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~at 209 (461)
T TIGR01039 138 APYAKGGKIGLFGGAGVGKTVL-IQELINNIAKE-----HGG--YSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQ 209 (461)
T ss_pred CCcccCCEEEeecCCCCChHHH-HHHHHHHHHhc-----CCC--eEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEEC
Confidence 3567789999999999999966 33343333221 112 333343333444444444444 112 2 34444444
Q ss_pred CCCCCeeEEeccchhh-----hchHHHhcCCCCeEEEEecch
Q psy14082 80 TPKGPQDCLPLHRFVF-----NCQYEMAKNPAFKVIVFVETK 116 (233)
Q Consensus 80 ~~~~~~~lv~l~r~~~-----~~~~~~~~~~~~k~iIf~~~~ 116 (233)
.+..+ +.|+.. -+.+++...++..++++..+.
T Consensus 210 sd~p~-----~~R~~a~~~a~tiAEyfrd~~G~~VLll~Dsl 246 (461)
T TIGR01039 210 MNEPP-----GARMRVALTGLTMAEYFRDEQGQDVLLFIDNI 246 (461)
T ss_pred CCCCH-----HHHHHHHHHHHHHHHHHHHhcCCeeEEEecch
Confidence 44322 112111 123355544667777777553
No 379
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.86 E-value=1.1 Score=36.12 Aligned_cols=38 Identities=8% Similarity=-0.087 Sum_probs=25.0
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcC
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAP 52 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~P 52 (233)
.+..+++.+|+|+|||.. +..+.+.+.. .+.+++++.-
T Consensus 44 ~~~~l~l~Gp~G~GKThL-l~a~~~~~~~-------~~~~v~y~~~ 81 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHL-LHAACAELSQ-------RGRAVGYVPL 81 (235)
T ss_pred CCCeEEEECCCCCCHHHH-HHHHHHHHHh-------CCCeEEEEEH
Confidence 346789999999999965 4445554443 2456666544
No 380
>PRK08939 primosomal protein DnaI; Reviewed
Probab=86.73 E-value=1.1 Score=37.87 Aligned_cols=48 Identities=8% Similarity=-0.022 Sum_probs=30.9
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTV 63 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~ 63 (233)
.++.+++.+++|+|||.. +.++...+... +..+.++ ..-+|+.++...
T Consensus 155 ~~~gl~L~G~~G~GKThL-a~Aia~~l~~~-------g~~v~~~-~~~~l~~~lk~~ 202 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYL-LAAIANELAKK-------GVSSTLL-HFPEFIRELKNS 202 (306)
T ss_pred CCCeEEEECCCCCCHHHH-HHHHHHHHHHc-------CCCEEEE-EHHHHHHHHHHH
Confidence 356799999999999977 55566666532 4444444 333566665544
No 381
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=86.64 E-value=6.4 Score=28.94 Aligned_cols=88 Identities=17% Similarity=0.215 Sum_probs=47.8
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCC
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQ 184 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P 184 (233)
.+.+++|+|.+.+.++.+-+.|-...-...+=|+-.... ......|+++++... -..+..+++||.+..
T Consensus 28 ~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~i~~~~~~--~~~~~~~vLinL~~~ 96 (137)
T PF04364_consen 28 QGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PAARQPVLITWDQEA--NPNNHADVLINLSGE 96 (137)
T ss_dssp TT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------STT--SEEEE-TTS------S--SEEEE--SS
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CCCCCeEEEecCccc--CCCCCCCEEEECCCC
Confidence 578999999999999999999988766666666642211 112358999987643 122347889998743
Q ss_pred C-CcccccceeeEEeecchH
Q psy14082 185 L-SANHNISQVIEVVQDYEK 203 (233)
Q Consensus 185 ~-~~~~~i~~~~~~~~~~~~ 203 (233)
. ..-.+..+++.++...+.
T Consensus 97 ~p~~~~~f~rvieiv~~~~~ 116 (137)
T PF04364_consen 97 VPPFFSRFERVIEIVDQDDE 116 (137)
T ss_dssp --GGGGG-SEEEEEE-SSHH
T ss_pred CcchhhcccEEEEEecCCHH
Confidence 3 222445899999987663
No 382
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=86.56 E-value=0.4 Score=33.96 Aligned_cols=22 Identities=5% Similarity=-0.313 Sum_probs=15.4
Q ss_pred eeEecCCCCCchHHhHHHHHHhh
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
+++.+++|||||.. +--+.+++
T Consensus 2 I~I~G~~gsGKST~-a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTL-AKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHH-HHHHHHHH
T ss_pred EEEECCCCCCHHHH-HHHHHHHH
Confidence 57899999999955 44444443
No 383
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=86.52 E-value=0.65 Score=33.11 Aligned_cols=22 Identities=5% Similarity=-0.313 Sum_probs=15.8
Q ss_pred eeEecCCCCCchHHhHHHHHHhh
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
+++.+|+|+|||.. +--+.+.+
T Consensus 1 ill~G~~G~GKT~l-~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL-ARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHH-HHHHHHHT
T ss_pred CEEECcCCCCeeHH-HHHHHhhc
Confidence 57889999999966 44444444
No 384
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=86.49 E-value=0.36 Score=39.68 Aligned_cols=20 Identities=10% Similarity=-0.167 Sum_probs=17.4
Q ss_pred CCCCCceeEecCCCCCchHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~ 24 (233)
+..|+++++.+++|+|||..
T Consensus 18 l~~g~~vLL~G~~GtGKT~l 37 (262)
T TIGR02640 18 LKSGYPVHLRGPAGTGKTTL 37 (262)
T ss_pred HhcCCeEEEEcCCCCCHHHH
Confidence 34688999999999999976
No 385
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=86.39 E-value=0.77 Score=41.30 Aligned_cols=23 Identities=4% Similarity=-0.116 Sum_probs=17.8
Q ss_pred eeEecCCCCCchHHhHHHHHHhhh
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
+++.+|||||||.+ +-.+++.+.
T Consensus 245 ilitGptGSGKTTt-L~a~L~~l~ 267 (486)
T TIGR02533 245 ILVTGPTGSGKTTT-LYAALSRLN 267 (486)
T ss_pred EEEEcCCCCCHHHH-HHHHHhccC
Confidence 68999999999966 555666654
No 386
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=86.38 E-value=1.4 Score=39.24 Aligned_cols=54 Identities=17% Similarity=0.086 Sum_probs=36.8
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
+..|.=+++.+++|+|||.. ++-++..+.. .+.+++++.. .|-..|+.....++
T Consensus 91 i~~GsvilI~G~pGsGKTTL-~lq~a~~~a~-------~g~kvlYvs~-EEs~~qi~~ra~rl 144 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTL-LLQVACQLAK-------NQMKVLYVSG-EESLQQIKMRAIRL 144 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCcEEEEEC-cCCHHHHHHHHHHc
Confidence 34577789999999999965 4444444432 2346888765 46677887777766
No 387
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=86.34 E-value=0.76 Score=43.45 Aligned_cols=50 Identities=10% Similarity=-0.162 Sum_probs=34.8
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQT 62 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~ 62 (233)
.++-.++.+++|||||.+ +-.++..+... .+...+++++||-.-|..+.+
T Consensus 337 ~~~~~iitGgpGTGKTt~-l~~i~~~~~~~-----~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 337 QHKVVILTGGPGTGKTTI-TRAIIELAEEL-----GGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred hCCeEEEECCCCCCHHHH-HHHHHHHHHHc-----CCCceEEEEeCchHHHHHHHH
Confidence 456789999999999966 44555555432 112568889999887776654
No 388
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=86.30 E-value=2.1 Score=34.97 Aligned_cols=39 Identities=13% Similarity=0.079 Sum_probs=27.4
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcC
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAP 52 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~P 52 (233)
.|.=+++.|.||.||| +|++-+...+..+ .+..+++++.
T Consensus 18 ~g~L~vi~a~pg~GKT-~~~l~ia~~~a~~------~~~~vly~Sl 56 (259)
T PF03796_consen 18 PGELTVIAARPGVGKT-AFALQIALNAALN------GGYPVLYFSL 56 (259)
T ss_dssp TT-EEEEEESTTSSHH-HHHHHHHHHHHHT------TSSEEEEEES
T ss_pred cCcEEEEEecccCCch-HHHHHHHHHHHHh------cCCeEEEEcC
Confidence 3556788899999999 4566666666543 2467888885
No 389
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=86.23 E-value=3.9 Score=40.01 Aligned_cols=99 Identities=14% Similarity=0.085 Sum_probs=64.5
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEc-CCC------
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFG-GTP------ 81 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~g-g~~------ 81 (233)
-|+.++||=|||++..+|+.-.-+. ++|+ =|++..-=||.-=.++...+ +.++++.++.. +.+
T Consensus 185 ~IAEM~TGEGKTLvAtlp~yLnAL~------GkgV--HvVTVNDYLA~RDaewmgply~fLGLsvg~i~~~~~~~~~rr~ 256 (1112)
T PRK12901 185 KIAEMATGEGKTLVATLPVYLNALT------GNGV--HVVTVNDYLAKRDSEWMGPLYEFHGLSVDCIDKHQPNSEARRK 256 (1112)
T ss_pred ceeeecCCCCchhHHHHHHHHHHHc------CCCc--EEEEechhhhhccHHHHHHHHHHhCCceeecCCCCCCHHHHHH
Confidence 4778889999999999998866654 2344 44555666887766666666 56899988865 212
Q ss_pred -CCCeeEEe---------------------ccc-----hhhhchHHHhcCCCCeEEEEecchh
Q psy14082 82 -KGPQDCLP---------------------LHR-----FVFNCQYEMAKNPAFKVIVFVETKK 117 (233)
Q Consensus 82 -~~~~~lv~---------------------l~r-----~~~~~~~~~~~~~~~k~iIf~~~~~ 117 (233)
+..+|.=| ..| ++|.+...+-.....|.||--+...
T Consensus 257 aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSILIDEARTPLIISGp~~~ 319 (1112)
T PRK12901 257 AYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLIDDARTPLIISGPVPK 319 (1112)
T ss_pred hCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhhhccccCcEEEeCCCCC
Confidence 23333222 112 5666666666667778888777443
No 390
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=86.16 E-value=0.41 Score=37.06 Aligned_cols=20 Identities=0% Similarity=-0.348 Sum_probs=14.7
Q ss_pred CCceeEecCCCCCchHHhHH
Q psy14082 8 GCQNFSKITNYLLSPPQYML 27 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~l 27 (233)
...+++.+|.|||||..|..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~ 22 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQ 22 (181)
T ss_dssp --EEEEE-STTSSHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 46789999999999987654
No 391
>PRK13766 Hef nuclease; Provisional
Probab=86.11 E-value=3.6 Score=39.21 Aligned_cols=69 Identities=26% Similarity=0.357 Sum_probs=50.9
Q ss_pred CCeEEEEecchhHHHHHHHHHhhC-CC---eeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc------cCcCCcCCCCc
Q psy14082 106 AFKVIVFVETKKKVEDITRALRRE-RH---SAICIHGDKTQQDRDYVLNDFRQGKAPILVATD------VAARGLDVEDV 175 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~~-~~---~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~------~~~~Gldi~~v 175 (233)
+.++++.++++..+++..+.+++. +. .+..++|+.+..+|...+. +.+|+|+|. ....-+++.++
T Consensus 58 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~-----~~~iiv~T~~~l~~~l~~~~~~~~~~ 132 (773)
T PRK13766 58 GGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE-----KAKVIVATPQVIENDLIAGRISLEDV 132 (773)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh-----CCCEEEECHHHHHHHHHcCCCChhhC
Confidence 358999999998888877777653 33 7888999999888766554 358999995 23344666677
Q ss_pred cEEE
Q psy14082 176 NTVN 179 (233)
Q Consensus 176 ~~VI 179 (233)
++||
T Consensus 133 ~liV 136 (773)
T PRK13766 133 SLLI 136 (773)
T ss_pred cEEE
Confidence 7766
No 392
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=86.02 E-value=17 Score=32.86 Aligned_cols=22 Identities=9% Similarity=-0.084 Sum_probs=18.9
Q ss_pred CCCCCCCceeEecCCCCCchHH
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~ 24 (233)
-++-+|+-..+.+..|+|||..
T Consensus 156 ~pigrGQr~~I~g~~g~GKt~L 177 (501)
T TIGR00962 156 IPIGRGQRELIIGDRQTGKTAV 177 (501)
T ss_pred CCcccCCEEEeecCCCCCccHH
Confidence 4567899999999999999975
No 393
>PRK14974 cell division protein FtsY; Provisional
Probab=86.00 E-value=2.4 Score=36.25 Aligned_cols=51 Identities=12% Similarity=-0.022 Sum_probs=30.3
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCc---HHHHHHHHHHHHHh
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPT---RELAQQIQTVAKEF 67 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~Pt---reL~~Q~~~~~~~~ 67 (233)
.=+++.+++|+|||.+..- +...+.. .+.+++++... ..-..|+......+
T Consensus 141 ~vi~~~G~~GvGKTTtiak-LA~~l~~-------~g~~V~li~~Dt~R~~a~eqL~~~a~~l 194 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAK-LAYYLKK-------NGFSVVIAAGDTFRAGAIEQLEEHAERL 194 (336)
T ss_pred eEEEEEcCCCCCHHHHHHH-HHHHHHH-------cCCeEEEecCCcCcHHHHHHHHHHHHHc
Confidence 4477899999999976332 3344432 24456665532 34556665555554
No 394
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=85.63 E-value=24 Score=31.97 Aligned_cols=23 Identities=13% Similarity=-0.028 Sum_probs=19.4
Q ss_pred CCCCCCCCceeEecCCCCCchHH
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~ 24 (233)
+-++-+|+-..+.+..|+|||..
T Consensus 156 l~pigrGQR~~I~g~~g~GKt~L 178 (502)
T PRK13343 156 LIPIGRGQRELIIGDRQTGKTAI 178 (502)
T ss_pred ccccccCCEEEeeCCCCCCccHH
Confidence 34567899999999999999966
No 395
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=85.62 E-value=1.3 Score=35.15 Aligned_cols=26 Identities=4% Similarity=-0.269 Sum_probs=18.8
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.+..+++.+++|+|||.. +..+....
T Consensus 37 ~~~~lll~G~~G~GKT~l-a~~~~~~~ 62 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHL-LQAACAAA 62 (226)
T ss_pred CCCeEEEECCCCCCHHHH-HHHHHHHH
Confidence 356799999999999966 44444444
No 396
>KOG0735|consensus
Probab=85.54 E-value=5.6 Score=37.44 Aligned_cols=145 Identities=10% Similarity=0.000 Sum_probs=78.7
Q ss_pred CCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh-----------hcCC
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF-----------SSAL 71 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~-----------~~~~ 71 (233)
.++++..++++-+|.|||||.. +-.++..+-. ..-.=+.++.-.+|...-.+.++++ .+.+
T Consensus 426 spv~~~~~Ill~G~~GsGKT~L-~kal~~~~~k-------~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSi 497 (952)
T KOG0735|consen 426 SPVFRHGNILLNGPKGSGKTNL-VKALFDYYSK-------DLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSI 497 (952)
T ss_pred ccccccccEEEeCCCCCCHhHH-HHHHHHHhcc-------ccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcE
Confidence 4578899999999999999965 5555554431 1112233333333433333333333 2222
Q ss_pred ----cEEEEEcCC-CCCCeeEEeccchhhhchHH-HhcCCCCeEEEEecchhHHHHHHHHHhhCC-CeeEEEeCCCCHHH
Q psy14082 72 ----RNICIFGGT-PKGPQDCLPLHRFVFNCQYE-MAKNPAFKVIVFVETKKKVEDITRALRRER-HSAICIHGDKTQQD 144 (233)
Q Consensus 72 ----~~~~~~gg~-~~~~~~lv~l~r~~~~~~~~-~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~ 144 (233)
.+.++.|+. +...|.=++-.|+.+.+.+. .......+.|.|..|.++-+.+...|.... +.+..--......+
T Consensus 498 IvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~ 577 (952)
T KOG0735|consen 498 IVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTR 577 (952)
T ss_pred EEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhH
Confidence 233444422 23344333333333333221 112344455777778888888888885544 34444445677888
Q ss_pred HHHHHHHhhCC
Q psy14082 145 RDYVLNDFRQG 155 (233)
Q Consensus 145 r~~~~~~f~~g 155 (233)
|.+++..+-+.
T Consensus 578 R~~IL~~~~s~ 588 (952)
T KOG0735|consen 578 RKEILTTIFSK 588 (952)
T ss_pred HHHHHHHHHHh
Confidence 88888876543
No 397
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=85.52 E-value=24 Score=30.85 Aligned_cols=137 Identities=9% Similarity=-0.005 Sum_probs=67.9
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEc--CcHHHHHHHHHHHHHhhcCCcEEEEEcCCCCCC
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLA--PTRELAQQIQTVAKEFSSALRNICIFGGTPKGP 84 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~--PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~~~ 84 (233)
.++-++..+|||+|||.+..- +..++.... ...+.++.++. +.|.-+......+.+. .++.+..... .
T Consensus 173 ~~~vi~lvGptGvGKTTT~aK-LA~~~~~~~---~~~g~~V~lit~Dt~R~aa~eQL~~~a~~-lgvpv~~~~~---~-- 242 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAK-LAAIYGINS---DDKSLNIKIITIDNYRIGAKKQIQTYGDI-MGIPVKAIES---F-- 242 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHH-HHHHHHhhh---ccCCCeEEEEeccCccHHHHHHHHHHhhc-CCcceEeeCc---H--
Confidence 356788999999999987443 333332110 01233444444 3344444333333221 1333221111 0
Q ss_pred eeEEeccchhhhchHHHhcCCCCeEEEEecchh-------HHHHHHHHHhhCC---CeeEEEeCCCCHHHHHHHHHHhhC
Q psy14082 85 QDCLPLHRFVFNCQYEMAKNPAFKVIVFVETKK-------KVEDITRALRRER---HSAICIHGDKTQQDRDYVLNDFRQ 154 (233)
Q Consensus 85 ~~lv~l~r~~~~~~~~~~~~~~~k~iIf~~~~~-------~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~ 154 (233)
+-+.+.+... ...-+|++.|.. ...++...+...+ ....++.+.....+-.+++++|..
T Consensus 243 ----------~~l~~~L~~~-~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~ 311 (388)
T PRK12723 243 ----------KDLKEEITQS-KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSP 311 (388)
T ss_pred ----------HHHHHHHHHh-CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcC
Confidence 0011111111 223344444431 2345555555433 244667777778888899999987
Q ss_pred CCCCEEEecc
Q psy14082 155 GKAPILVATD 164 (233)
Q Consensus 155 g~~~iLv~T~ 164 (233)
-...-+|-|-
T Consensus 312 ~~~~~~I~TK 321 (388)
T PRK12723 312 FSYKTVIFTK 321 (388)
T ss_pred CCCCEEEEEe
Confidence 6667676663
No 398
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=85.42 E-value=0.49 Score=33.62 Aligned_cols=14 Identities=0% Similarity=-0.657 Sum_probs=12.1
Q ss_pred eeEecCCCCCchHH
Q psy14082 11 NFSKITNYLLSPPQ 24 (233)
Q Consensus 11 ~i~~a~tGsGKT~~ 24 (233)
+++.+++|||||..
T Consensus 1 I~i~G~~GsGKtTi 14 (129)
T PF13238_consen 1 IGISGIPGSGKTTI 14 (129)
T ss_dssp EEEEESTTSSHHHH
T ss_pred CEEECCCCCCHHHH
Confidence 57889999999966
No 399
>PRK12678 transcription termination factor Rho; Provisional
Probab=85.41 E-value=4.1 Score=37.48 Aligned_cols=32 Identities=13% Similarity=-0.003 Sum_probs=24.2
Q ss_pred CCCCCCCceeEecCCCCCchHHhHHHHHHhhhc
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQYMLPAAVHISH 35 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~ 35 (233)
-++-.|+-.++.+++|+|||.. +..+++.+..
T Consensus 411 ~PIGkGQR~LIvgpp~aGKTtL-L~~IAn~i~~ 442 (672)
T PRK12678 411 MPIGKGQRGLIVSPPKAGKTTI-LQNIANAITT 442 (672)
T ss_pred cccccCCEeEEeCCCCCCHHHH-HHHHHHHHhh
Confidence 3556788899999999999976 5556665543
No 400
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=85.36 E-value=1.5 Score=39.71 Aligned_cols=55 Identities=11% Similarity=-0.071 Sum_probs=36.9
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
++.|.-+++.+++|+|||.-..--+.+.+.+ .+..++++ .+-|-..|+.+.+..+
T Consensus 28 ~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~-------~ge~~lyi-s~ee~~~~i~~~~~~~ 82 (509)
T PRK09302 28 LPKGRPTLVSGTAGTGKTLFALQFLVNGIKR-------FDEPGVFV-TFEESPEDIIRNVASF 82 (509)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-------cCCCEEEE-EccCCHHHHHHHHHHc
Confidence 4578889999999999995533223333321 14567666 4557777888888777
No 401
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=85.36 E-value=1.9 Score=40.92 Aligned_cols=47 Identities=13% Similarity=-0.067 Sum_probs=33.7
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQT 62 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~ 62 (233)
++-.++++++|+|||.+ +-++.+.+.. .+.+++.++||---+..+.+
T Consensus 368 ~~~~il~G~aGTGKTtl-l~~i~~~~~~-------~g~~V~~~ApTg~Aa~~L~~ 414 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTM-LKAAREAWEA-------AGYRVIGAALSGKAAEGLQA 414 (744)
T ss_pred CCEEEEEecCCCCHHHH-HHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHh
Confidence 34578999999999966 4445544432 36789999999877776654
No 402
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=85.32 E-value=1.6 Score=39.52 Aligned_cols=54 Identities=15% Similarity=-0.020 Sum_probs=37.2
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
++.|.-+++.+++|+|||.. +.-++..... .+-++++++ +.+-..|+.+.+..+
T Consensus 270 ~~~g~~~li~G~~G~GKT~l-~~~~~~~~~~-------~g~~~~yis-~e~~~~~i~~~~~~~ 323 (509)
T PRK09302 270 FFRGSIILVSGATGTGKTLL-ASKFAEAACR-------RGERCLLFA-FEESRAQLIRNARSW 323 (509)
T ss_pred CCCCcEEEEEcCCCCCHHHH-HHHHHHHHHh-------CCCcEEEEE-ecCCHHHHHHHHHHc
Confidence 45688888999999999965 4333333322 355678775 446688888888777
No 403
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=85.24 E-value=1.3 Score=33.83 Aligned_cols=47 Identities=9% Similarity=-0.051 Sum_probs=28.4
Q ss_pred ceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
-+++.+++|||||.. +.-+.... +...+++......-.++.+++...
T Consensus 3 ~ili~G~~~sGKS~~-a~~l~~~~----------~~~~~~iat~~~~~~e~~~ri~~h 49 (170)
T PRK05800 3 LILVTGGARSGKSRF-AERLAAQS----------GLQVLYIATAQPFDDEMAARIAHH 49 (170)
T ss_pred EEEEECCCCccHHHH-HHHHHHHc----------CCCcEeCcCCCCChHHHHHHHHHH
Confidence 478999999999944 44444332 223566766554455555555443
No 404
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=85.12 E-value=1.1 Score=36.79 Aligned_cols=54 Identities=17% Similarity=0.041 Sum_probs=34.8
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEE------EcCcHHHHHHHHHHHHHh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALV------LAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~li------l~PtreL~~Q~~~~~~~~ 67 (233)
..|--+...+|+|||||.+ +-+++++.+.. .| .++| =.|-.+|-..+--.++..
T Consensus 25 ~~gef~vliGpSGsGKTTt--LkMINrLiept-----~G-~I~i~g~~i~~~d~~~LRr~IGYviQqi 84 (309)
T COG1125 25 EEGEFLVLIGPSGSGKTTT--LKMINRLIEPT-----SG-EILIDGEDISDLDPVELRRKIGYVIQQI 84 (309)
T ss_pred cCCeEEEEECCCCCcHHHH--HHHHhcccCCC-----Cc-eEEECCeecccCCHHHHHHhhhhhhhhc
Confidence 3466678899999999966 56888887642 11 1111 125566766666666665
No 405
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=85.10 E-value=10 Score=33.45 Aligned_cols=32 Identities=9% Similarity=0.140 Sum_probs=25.0
Q ss_pred eEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc
Q psy14082 133 AICIHGDKTQQDRDYVLNDFRQGKAPILVATD 164 (233)
Q Consensus 133 ~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~ 164 (233)
..++...+..++-.++++.|+.-.+.-+|-|.
T Consensus 304 ~LVl~at~~~~~~~~~~~~f~~~~~~~~I~TK 335 (420)
T PRK14721 304 LLLLNATSSGDTLDEVISAYQGHGIHGCIITK 335 (420)
T ss_pred EEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEe
Confidence 45567777888889999999877777777774
No 406
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=84.86 E-value=1.8 Score=29.51 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=33.0
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKT 141 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 141 (233)
.+..+++++|.+-..+...+..|++.|+.+..+.|++.
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 35678999999988899999999999999888888874
No 407
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=84.85 E-value=1.5 Score=32.94 Aligned_cols=35 Identities=3% Similarity=-0.221 Sum_probs=22.7
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCc
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPT 53 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~Pt 53 (233)
+.+.+++|||||.. +--++..+.. .|.++.++-+.
T Consensus 2 i~i~G~~gsGKTtl-~~~l~~~l~~-------~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTL-IERLVKALKA-------RGYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEecc
Confidence 35678999999954 4555555532 35667777654
No 408
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=84.81 E-value=13 Score=28.07 Aligned_cols=27 Identities=4% Similarity=-0.239 Sum_probs=18.5
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhc
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISH 35 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~ 35 (233)
|.=+|..+.+|||||.. +-.+-.+|..
T Consensus 2 g~vIwltGlsGsGKtTl-A~~L~~~L~~ 28 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTL-ARALERRLFA 28 (156)
T ss_dssp -EEEEEESSTTSSHHHH-HHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 44578999999999954 4545555543
No 409
>KOG1131|consensus
Probab=84.79 E-value=3.7 Score=37.08 Aligned_cols=58 Identities=7% Similarity=0.014 Sum_probs=33.0
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
-++-+.+..+|+|+|||++ ++.++-..+..-+ ...-+.++-+-|..=.+....+++.+
T Consensus 33 DakGh~llEMPSGTGKTvs-LLSli~aYq~~~p---~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 33 DAKGHCLLEMPSGTGKTVS-LLSLIIAYQLHYP---DEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred ccCCcEEEECCCCCCcchH-HHHHHHHHHHhCC---cccceEEEecCcchHHHHHHHHHHHH
Confidence 3466789999999999988 5656555554321 12233444444433334444444444
No 410
>PRK12608 transcription termination factor Rho; Provisional
Probab=84.76 E-value=1.6 Score=37.79 Aligned_cols=32 Identities=9% Similarity=0.035 Sum_probs=24.5
Q ss_pred CCCCCCCceeEecCCCCCchHHhHHHHHHhhhc
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQYMLPAAVHISH 35 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~ 35 (233)
-++-.|+..++.++.|+|||.. +.-+++.+..
T Consensus 128 ~PiGkGQR~LIvG~pGtGKTTL-l~~la~~i~~ 159 (380)
T PRK12608 128 APIGKGQRGLIVAPPRAGKTVL-LQQIAAAVAA 159 (380)
T ss_pred eecCCCceEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 3456789999999999999966 5556666654
No 411
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=84.73 E-value=1.6 Score=34.77 Aligned_cols=40 Identities=15% Similarity=0.000 Sum_probs=25.9
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcC
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAP 52 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~P 52 (233)
++.|.=+.+.+++|+|||.. ++-++..... .+.+++++.-
T Consensus 20 i~~g~i~~i~G~~GsGKT~l-~~~la~~~~~-------~~~~v~yi~~ 59 (225)
T PRK09361 20 FERGTITQIYGPPGSGKTNI-CLQLAVEAAK-------NGKKVIYIDT 59 (225)
T ss_pred CCCCeEEEEECCCCCCHHHH-HHHHHHHHHH-------CCCeEEEEEC
Confidence 35677789999999999965 3434433332 2456777654
No 412
>PRK06936 type III secretion system ATPase; Provisional
Probab=84.46 E-value=16 Score=32.55 Aligned_cols=20 Identities=5% Similarity=-0.356 Sum_probs=16.7
Q ss_pred CCCCCceeEecCCCCCchHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~ 24 (233)
+-.|.-+.+.++.|+|||..
T Consensus 159 i~~Gq~~~I~G~sG~GKStL 178 (439)
T PRK06936 159 CGEGQRMGIFAAAGGGKSTL 178 (439)
T ss_pred ecCCCEEEEECCCCCChHHH
Confidence 45677888999999999965
No 413
>PRK09354 recA recombinase A; Provisional
Probab=84.35 E-value=2.2 Score=36.65 Aligned_cols=45 Identities=13% Similarity=-0.048 Sum_probs=29.9
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELA 57 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~ 57 (233)
+++|+=+.+.+|+|||||.. ++.++..... .+..++++-.-..+-
T Consensus 57 ip~G~IteI~G~~GsGKTtL-al~~~~~~~~-------~G~~~~yId~E~s~~ 101 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTL-ALHAIAEAQK-------AGGTAAFIDAEHALD 101 (349)
T ss_pred CcCCeEEEEECCCCCCHHHH-HHHHHHHHHH-------cCCcEEEECCccchH
Confidence 56788888999999999966 4444443332 356677776554444
No 414
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=84.29 E-value=0.84 Score=36.66 Aligned_cols=28 Identities=11% Similarity=-0.152 Sum_probs=21.6
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhc
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISH 35 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~ 35 (233)
..|.-+.+.+|+|||||. ++-++..+..
T Consensus 29 ~~Ge~vaI~GpSGSGKST--LLniig~ld~ 56 (226)
T COG1136 29 EAGEFVAIVGPSGSGKST--LLNLLGGLDK 56 (226)
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHhcccC
Confidence 467788999999999994 4666766654
No 415
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=84.24 E-value=2.3 Score=36.88 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=35.7
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
..|.=+++.+++|+|||.. ++-+...+.. .+.+++++.- .|-..|+.....++
T Consensus 80 ~~GslvLI~G~pG~GKStL-llq~a~~~a~-------~g~~VlYvs~-EEs~~qi~~Ra~rl 132 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTL-LLQVAARLAK-------RGGKVLYVSG-EESPEQIKLRADRL 132 (372)
T ss_pred cCCeEEEEEeCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEEC-CcCHHHHHHHHHHc
Confidence 4467788999999999965 4444444432 2456888765 35667877777766
No 416
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=84.19 E-value=2 Score=37.10 Aligned_cols=54 Identities=22% Similarity=0.118 Sum_probs=38.6
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHH--HHHHHHh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQI--QTVAKEF 67 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~--~~~~~~~ 67 (233)
..|..+++.++-|+|||.. +-.+.+.+ . ..+..+++.+||---|..+ ..++..+
T Consensus 20 ~~~~~~fv~G~~GtGKs~l-~~~i~~~~-~------~~~~~~~~~a~tg~AA~~i~~G~T~hs~ 75 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFL-IKAIIDYL-R------SRGKKVLVTAPTGIAAFNIPGGRTIHSF 75 (364)
T ss_pred cCCcEEEEEcCCCCChhHH-HHHHHHHh-c------cccceEEEecchHHHHHhccCCcchHHh
Confidence 4578899999999999966 22344333 2 2467899999998888877 4555555
No 417
>KOG1806|consensus
Probab=84.19 E-value=1.2 Score=43.08 Aligned_cols=55 Identities=5% Similarity=-0.057 Sum_probs=44.7
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
..-+.++.+|||+|||-. +.-++.-+..+ .+.++++|++.+..-..|.++.+.+.
T Consensus 752 qpgltmvvgppgtgktd~-avqil~~lyhn-----~p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 752 QPGLTMVVGPPGTGKTDV-AVQILSVLYHN-----SPNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred CCCceeeecCCCCCCcch-hhhhhhhhhhc-----CCCcceEEEEecccchhHHHHHHHhc
Confidence 346789999999999977 55567666665 56889999999988888888888777
No 418
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=84.17 E-value=1.6 Score=34.76 Aligned_cols=38 Identities=11% Similarity=-0.163 Sum_probs=24.0
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcC
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAP 52 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~P 52 (233)
.+..+++.+++|+|||.. +-.+...... .+..++++..
T Consensus 41 ~~~~~~l~G~~G~GKT~L-a~ai~~~~~~-------~~~~~~~i~~ 78 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHL-LQALVADASY-------GGRNARYLDA 78 (227)
T ss_pred CCCeEEEECCCCCCHHHH-HHHHHHHHHh-------CCCcEEEEeh
Confidence 345699999999999955 3444444332 2445666554
No 419
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=84.00 E-value=22 Score=31.50 Aligned_cols=53 Identities=13% Similarity=-0.091 Sum_probs=31.1
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVA 64 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~ 64 (233)
+-.|.-+.+.+++|+|||..+ -++...... ..+..+++=-..+|..+-+.+.+
T Consensus 137 i~~Gq~i~I~G~sG~GKTtLl--~~I~~~~~~-----~~gvi~~iGer~~ev~~~~~~~l 189 (418)
T TIGR03498 137 LCRGQRLGIFAGSGVGKSTLL--SMLARNTDA-----DVVVIALVGERGREVREFLEDDL 189 (418)
T ss_pred ccCCcEEEEECCCCCChHHHH--HHHhCCCCC-----CEEEEEEEeeechHHHHHHHHhh
Confidence 446777889999999999663 334333221 22333444456677665554443
No 420
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=83.98 E-value=19 Score=30.63 Aligned_cols=99 Identities=12% Similarity=0.043 Sum_probs=48.3
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCC-cEEEEEcCCCCC
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSAL-RNICIFGGTPKG 83 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~-~~~~~~gg~~~~ 83 (233)
+-.|.-+.+.+++|+|||..+ -++...... ..+..+++--..+|...-+.+.... ..+ ++.++.+..+..
T Consensus 66 i~~Gqri~I~G~sG~GKTtLl--~~Ia~~~~~-----~~~vi~~iGer~~ev~~~~~~~~~~--~~l~rtvvv~~t~d~~ 136 (326)
T cd01136 66 VGKGQRLGIFAGSGVGKSTLL--GMIARGTTA-----DVNVIALIGERGREVREFIEKDLGE--EGLKRSVVVVATSDES 136 (326)
T ss_pred EcCCcEEEEECCCCCChHHHH--HHHhCCCCC-----CEEEEEEEecCCccHHHHHHHHHhc--CccceEEEEEcCCCCC
Confidence 345777888999999999762 234333211 2233344444556665544333322 122 445555554443
Q ss_pred Cee--EEeccchhhhchHHHhcCCCCeEEEEecc
Q psy14082 84 PQD--CLPLHRFVFNCQYEMAKNPAFKVIVFVET 115 (233)
Q Consensus 84 ~~~--lv~l~r~~~~~~~~~~~~~~~k~iIf~~~ 115 (233)
+-. .++ ..---+.+++. ..+..++++..+
T Consensus 137 ~~~r~~~~--~~a~~~AEyfr-~~g~~Vll~~Ds 167 (326)
T cd01136 137 PLLRVKAA--YTATAIAEYFR-DQGKDVLLLMDS 167 (326)
T ss_pred HHHHHHHH--HHHHHHHHHHH-HcCCCeEEEecc
Confidence 211 000 01111233444 356677777765
No 421
>KOG0348|consensus
Probab=83.89 E-value=4.9 Score=36.42 Aligned_cols=77 Identities=13% Similarity=0.148 Sum_probs=48.6
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCC--CCHHHHHHHHHHhhCCCCCEEEeccc-------CcCCcCC
Q psy14082 102 AKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGD--KTQQDRDYVLNDFRQGKAPILVATDV-------AARGLDV 172 (233)
Q Consensus 102 ~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~~~r~~~~~~f~~g~~~iLv~T~~-------~~~Gldi 172 (233)
.+..+.=++|.++||+-|.++++.+++.-..+.++-.+ |.-+.|..--.+++.| ++|||+|+- --..+++
T Consensus 207 ~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKG-iNILIgTPGRLvDHLknT~~i~~ 285 (708)
T KOG0348|consen 207 QRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKG-INILIGTPGRLVDHLKNTKSIKF 285 (708)
T ss_pred cccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcC-ceEEEcCchHHHHHHhccchhee
Confidence 34566678999999999999999998875443332211 1112233333445555 899999951 1234666
Q ss_pred CCccEEE
Q psy14082 173 EDVNTVN 179 (233)
Q Consensus 173 ~~v~~VI 179 (233)
..+.|+|
T Consensus 286 s~LRwlV 292 (708)
T KOG0348|consen 286 SRLRWLV 292 (708)
T ss_pred eeeeEEE
Confidence 7777776
No 422
>KOG0745|consensus
Probab=83.86 E-value=0.65 Score=40.80 Aligned_cols=27 Identities=0% Similarity=-0.336 Sum_probs=19.6
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
+..-++++.+|||||||+... -+.+++
T Consensus 224 LeKSNvLllGPtGsGKTllaq--TLAr~l 250 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTLLAQ--TLARVL 250 (564)
T ss_pred eecccEEEECCCCCchhHHHH--HHHHHh
Confidence 456689999999999997632 344444
No 423
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=83.86 E-value=1.5 Score=38.72 Aligned_cols=58 Identities=10% Similarity=0.021 Sum_probs=35.0
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCC
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSAL 71 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~ 71 (233)
..|.=+++.|+||+||| +|++-++..+... .+..+++++. -.=..|+.+++.....++
T Consensus 193 ~~G~l~vi~g~pg~GKT-~~~l~~a~~~a~~------~g~~vl~~Sl-Em~~~~i~~R~~~~~~~v 250 (434)
T TIGR00665 193 QPSDLIILAARPSMGKT-AFALNIAENAAIK------EGKPVAFFSL-EMSAEQLAMRMLSSESRV 250 (434)
T ss_pred CCCeEEEEEeCCCCChH-HHHHHHHHHHHHh------CCCeEEEEeC-cCCHHHHHHHHHHHhcCC
Confidence 44666788999999999 5566666554421 2445676653 344555555555443333
No 424
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=83.86 E-value=16 Score=29.54 Aligned_cols=65 Identities=12% Similarity=0.215 Sum_probs=51.0
Q ss_pred cCCCCeEEEEecch-----------hHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCC----CCCEEEecccCc
Q psy14082 103 KNPAFKVIVFVETK-----------KKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQG----KAPILVATDVAA 167 (233)
Q Consensus 103 ~~~~~k~iIf~~~~-----------~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g----~~~iLv~T~~~~ 167 (233)
..+.+.+||+.|.. ..++.+++.|++.|+.+ .++.+++.++-.+.+++|.+. ..+++++. .++
T Consensus 5 ~~p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V-~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~-~~s 82 (241)
T smart00115 5 SKPRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEV-HVKNNLTAEEMLEELKEFAERPEHSDSDSFVCV-LLS 82 (241)
T ss_pred CCCCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHhccccCCCCEEEEE-EcC
Confidence 45667788888863 57999999999999987 567889999999999999763 35666665 566
Q ss_pred CC
Q psy14082 168 RG 169 (233)
Q Consensus 168 ~G 169 (233)
.|
T Consensus 83 HG 84 (241)
T smart00115 83 HG 84 (241)
T ss_pred CC
Confidence 66
No 425
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=83.80 E-value=2.8 Score=36.95 Aligned_cols=53 Identities=13% Similarity=0.030 Sum_probs=31.8
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKE 66 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~ 66 (233)
..|.=+++.|+||+||| +|++-+...+.. ..+..+++++. -.-..|+..++..
T Consensus 192 ~~g~liviag~pg~GKT-~~al~ia~~~a~------~~g~~v~~fSl-Em~~~~l~~Rl~~ 244 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKT-TLALNIAENVAL------REGKPVLFFSL-EMSAEQLGERLLA 244 (421)
T ss_pred CCCceEEEEeCCCCCHH-HHHHHHHHHHHH------hCCCcEEEEEC-CCCHHHHHHHHHH
Confidence 44666788999999999 556666655431 12445777762 2334454444433
No 426
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=83.77 E-value=0.56 Score=34.19 Aligned_cols=14 Identities=0% Similarity=-0.555 Sum_probs=12.0
Q ss_pred eeEecCCCCCchHH
Q psy14082 11 NFSKITNYLLSPPQ 24 (233)
Q Consensus 11 ~i~~a~tGsGKT~~ 24 (233)
+++.+++|||||..
T Consensus 2 ii~~G~pgsGKSt~ 15 (143)
T PF13671_consen 2 IILCGPPGSGKSTL 15 (143)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999944
No 427
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=83.56 E-value=1.4 Score=42.05 Aligned_cols=41 Identities=12% Similarity=-0.148 Sum_probs=29.0
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHH
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTREL 56 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL 56 (233)
+.+.++.++||||||.. +--++..++. .+.+++|+=|..+-
T Consensus 430 n~n~~I~G~tGsGKS~~-~~~l~~~~~~-------~g~~v~iiD~~~sy 470 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFF-MQELIVDNLS-------RGGKVWVIDVGRSY 470 (797)
T ss_pred ccceEEEcCCCCCHHHH-HHHHHHHHHh-------CCCEEEEEeCCCCH
Confidence 45799999999999977 4445555543 35677777776544
No 428
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=83.52 E-value=13 Score=27.41 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=57.1
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEe-cccCcCCcCCCCccEEEEec
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVA-TDVAARGLDVEDVNTVNIGS 182 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~-T~~~~~Gldi~~v~~VI~~d 182 (233)
..+.|++|.|.+.+.++.+-+.|-...-...+=|+-..... .....|+++ ++. -+.+..+++||.+
T Consensus 27 ~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~---------~~~~PV~l~~~~~----~~~~~~~~LinL~ 93 (142)
T PRK05728 27 RAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEGP---------AAGQPVLLTWPGK----RNANHRDLLINLD 93 (142)
T ss_pred HCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCCC---------CCCCCEEEEcCCC----CCCCCCcEEEECC
Confidence 46889999999999999999999877656656666322110 124678887 321 2345667899887
Q ss_pred C--CCCcccccceeeEEeecch
Q psy14082 183 L--QLSANHNISQVIEVVQDYE 202 (233)
Q Consensus 183 ~--P~~~~~~i~~~~~~~~~~~ 202 (233)
. |.... +..|++.++.+.+
T Consensus 94 ~~~p~~~~-~F~Rvieiv~~d~ 114 (142)
T PRK05728 94 GAVPAFAA-AFERVVDFVGYDE 114 (142)
T ss_pred CCCcchhh-cccEEEEEeCCCH
Confidence 4 44434 4489999996544
No 429
>PRK07004 replicative DNA helicase; Provisional
Probab=83.50 E-value=2.4 Score=37.87 Aligned_cols=52 Identities=8% Similarity=-0.020 Sum_probs=30.8
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVA 64 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~ 64 (233)
+..|.=+++.|.||+||| +|++-+....... .+..+++++ ...=..|+..++
T Consensus 210 ~~~g~liviaarpg~GKT-~~al~ia~~~a~~------~~~~v~~fS-lEM~~~ql~~R~ 261 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKT-AFSMNIGEYVAVE------YGLPVAVFS-MEMPGTQLAMRM 261 (460)
T ss_pred CCCCceEEEEeCCCCCcc-HHHHHHHHHHHHH------cCCeEEEEe-CCCCHHHHHHHH
Confidence 345666788899999999 5577666554321 244566665 223344444444
No 430
>KOG0741|consensus
Probab=83.44 E-value=15 Score=33.53 Aligned_cols=49 Identities=10% Similarity=0.009 Sum_probs=31.4
Q ss_pred ceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcH-------HHHHHHHHHHHHhh
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTR-------ELAQQIQTVAKEFS 68 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~Ptr-------eL~~Q~~~~~~~~~ 68 (233)
-++..+|+|||||...+-..+. ..-|-+=|++|.. +-|.-+.+.|+..+
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~----------S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALS----------SDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAY 595 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhh----------cCCCeEEEeChHHccCccHHHHHHHHHHHHHHhh
Confidence 4788999999999654332221 4467777777742 44556666666653
No 431
>KOG0329|consensus
Probab=83.26 E-value=3.2 Score=34.01 Aligned_cols=71 Identities=20% Similarity=0.272 Sum_probs=53.2
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhC-----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc------cCcCCcCCC
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRE-----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD------VAARGLDVE 173 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~------~~~~Gldi~ 173 (233)
..-.+++.|.|++.+..+.+...+. +.++.++.||++-+.-.+.++. -..|+|+|+ +-.+-+++.
T Consensus 109 g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk 184 (387)
T KOG0329|consen 109 GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLK 184 (387)
T ss_pred CeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchh
Confidence 3456799999999999988877654 5789999999998888887765 456889995 223456666
Q ss_pred CccEEE
Q psy14082 174 DVNTVN 179 (233)
Q Consensus 174 ~v~~VI 179 (233)
++.+.+
T Consensus 185 ~vkhFv 190 (387)
T KOG0329|consen 185 NVKHFV 190 (387)
T ss_pred hcceee
Confidence 666544
No 432
>PRK05748 replicative DNA helicase; Provisional
Probab=82.80 E-value=2.1 Score=38.08 Aligned_cols=53 Identities=6% Similarity=-0.035 Sum_probs=33.8
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKE 66 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~ 66 (233)
..|.=+++.|.||+||| +|++-++...... .+..+++++ ..+-..|+..++..
T Consensus 201 ~~G~livIaarpg~GKT-~~al~ia~~~a~~------~g~~v~~fS-lEms~~~l~~R~l~ 253 (448)
T PRK05748 201 QPNDLIIVAARPSVGKT-AFALNIAQNVATK------TDKNVAIFS-LEMGAESLVMRMLC 253 (448)
T ss_pred CCCceEEEEeCCCCCch-HHHHHHHHHHHHh------CCCeEEEEe-CCCCHHHHHHHHHH
Confidence 45666888999999999 5577676655321 244566664 33455666666643
No 433
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=82.74 E-value=2.2 Score=36.94 Aligned_cols=28 Identities=0% Similarity=-0.263 Sum_probs=20.5
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhcc
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQ 36 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~ 36 (233)
+.++++-++||||||++ +--+...+...
T Consensus 42 p~n~~iyG~~GTGKT~~-~~~v~~~l~~~ 69 (366)
T COG1474 42 PSNIIIYGPTGTGKTAT-VKFVMEELEES 69 (366)
T ss_pred CccEEEECCCCCCHhHH-HHHHHHHHHhh
Confidence 34589999999999988 44466666543
No 434
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=82.66 E-value=2 Score=33.96 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=34.7
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQI 60 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~ 60 (233)
++.|.=.=.++|.|.||+. ++.+..++.......-.-..+-+-=.|+++||..+
T Consensus 24 i~~g~iTs~IGPNGAGKST--LLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~l 77 (252)
T COG4604 24 IPKGGITSIIGPNGAGKST--LLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKL 77 (252)
T ss_pred ecCCceeEEECCCCccHHH--HHHHHHHhccccCceEEEeeeecccCChHHHHHHH
Confidence 3456666678999999994 57788888865321111122334446899998654
No 435
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=82.62 E-value=1.3 Score=43.16 Aligned_cols=49 Identities=10% Similarity=-0.129 Sum_probs=34.1
Q ss_pred CCCCCc-eeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHH
Q psy14082 5 SESGCQ-NFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQ 61 (233)
Q Consensus 5 ~~~g~d-~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~ 61 (233)
++.+++ .++++..|||||.+ +-++.+.+ + ..|.+++.++||---+..+.
T Consensus 358 il~s~~v~vv~G~AGTGKTT~-l~~~~~~~-e------~~G~~V~~~ApTGkAA~~L~ 407 (988)
T PRK13889 358 VTDGRDLGVVVGYAGTGKSAM-LGVAREAW-E------AAGYEVRGAALSGIAAENLE 407 (988)
T ss_pred HhcCCCeEEEEeCCCCCHHHH-HHHHHHHH-H------HcCCeEEEecCcHHHHHHHh
Confidence 345444 68899999999976 44444443 2 23778999999987776654
No 436
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=82.52 E-value=0.77 Score=38.57 Aligned_cols=22 Identities=5% Similarity=-0.218 Sum_probs=16.4
Q ss_pred ceeEecCCCCCchHHhHHHHHHh
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVH 32 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~ 32 (233)
=+++.+|||||||.. ++-+..+
T Consensus 6 ii~I~GpTasGKS~L-Al~LA~~ 27 (300)
T PRK14729 6 IVFIFGPTAVGKSNI-LFHFPKG 27 (300)
T ss_pred EEEEECCCccCHHHH-HHHHHHh
Confidence 378899999999965 5555543
No 437
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=82.51 E-value=5.5 Score=32.95 Aligned_cols=18 Identities=0% Similarity=-0.476 Sum_probs=15.8
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
+.++|+--+|||+|||..
T Consensus 150 APknVLFyGppGTGKTm~ 167 (368)
T COG1223 150 APKNVLFYGPPGTGKTMM 167 (368)
T ss_pred CcceeEEECCCCccHHHH
Confidence 467899999999999976
No 438
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=82.46 E-value=5.9 Score=35.96 Aligned_cols=71 Identities=11% Similarity=0.226 Sum_probs=47.4
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----cCcC-CcCCCC
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----VAAR-GLDVED 174 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~~-Gldi~~ 174 (233)
.+.+++|.++|++-+.++.+.++.. ++.+..+.|+.+...+... ++. ..+|+|+|. .+.+ ++++.+
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~---l~~-~~~IiV~TPgrL~~~l~~~~~~l~~ 270 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYR---IQQ-GVELIVGTPGRLIDLLSKHDIELDN 270 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHH---hcC-CCCEEEECHHHHHHHHHcCCccchh
Confidence 5678999999999998877776543 4677778887665554332 333 478999993 3332 455556
Q ss_pred ccEEE
Q psy14082 175 VNTVN 179 (233)
Q Consensus 175 v~~VI 179 (233)
+.++|
T Consensus 271 v~~lV 275 (518)
T PLN00206 271 VSVLV 275 (518)
T ss_pred eeEEE
Confidence 66544
No 439
>KOG0743|consensus
Probab=82.39 E-value=17 Score=32.28 Aligned_cols=130 Identities=11% Similarity=0.029 Sum_probs=73.6
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEcCCCC------
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFGGTPK------ 82 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~gg~~~------ 82 (233)
-+.-+|+||||| +++.++.+.+.- ...-|=|+- .+--+.++++ ...-+..+++-+.+-
T Consensus 238 YLLYGPPGTGKS-S~IaAmAn~L~y--------dIydLeLt~-----v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~ 303 (457)
T KOG0743|consen 238 YLLYGPPGTGKS-SFIAAMANYLNY--------DIYDLELTE-----VKLDSDLRHLLLATPNKSILLIEDIDCSFDLRE 303 (457)
T ss_pred ceeeCCCCCCHH-HHHHHHHhhcCC--------ceEEeeecc-----ccCcHHHHHHHHhCCCCcEEEEeeccccccccc
Confidence 356799999999 556667666632 223332222 1222336666 222233333332111
Q ss_pred ---C----Ce---eEEeccchhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCC-CeeEEEeCCCCHHHHHHHHHH
Q psy14082 83 ---G----PQ---DCLPLHRFVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRER-HSAICIHGDKTQQDRDYVLND 151 (233)
Q Consensus 83 ---~----~~---~lv~l~r~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~ 151 (233)
+ .+ --|.|+-++..+.-........|++||+. .+.+.+-..|-+.| ....++-|.-+...-....+.
T Consensus 304 ~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTT--Nh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~n 381 (457)
T KOG0743|consen 304 RRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTT--NHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASN 381 (457)
T ss_pred ccccccccccCCcceeehHHhhhhhccccccCCCceEEEEec--CChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHH
Confidence 1 01 12555555555555555666788888875 56777777776655 455566666677777777777
Q ss_pred hhCCC
Q psy14082 152 FRQGK 156 (233)
Q Consensus 152 f~~g~ 156 (233)
|-..+
T Consensus 382 YL~~~ 386 (457)
T KOG0743|consen 382 YLGIE 386 (457)
T ss_pred hcCCC
Confidence 76554
No 440
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=82.38 E-value=35 Score=30.27 Aligned_cols=48 Identities=8% Similarity=0.090 Sum_probs=33.2
Q ss_pred hHHHHHHHHHhhCC-----CeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc
Q psy14082 117 KKVEDITRALRRER-----HSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD 164 (233)
Q Consensus 117 ~~~~~l~~~L~~~~-----~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~ 164 (233)
..++.+.+.+...+ ....++.+...+++-..+.+.|..-.++-+|-|.
T Consensus 316 ~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTK 368 (432)
T PRK12724 316 EQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTK 368 (432)
T ss_pred HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEc
Confidence 44555555554321 2456677888888889999999887788777774
No 441
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=82.28 E-value=4.2 Score=37.37 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=51.5
Q ss_pred CCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEec
Q psy14082 106 AFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVAT 163 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T 163 (233)
.+-+||..+-..-.+.=.+.|+..|+.+..+++.++.++|..+++.+..|++++|--+
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyis 114 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYIS 114 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEEC
Confidence 3478888888888888788899999999999999999999999999999999998555
No 442
>KOG1133|consensus
Probab=82.25 E-value=11 Score=35.38 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=23.1
Q ss_pred CCCCEEEe--cccCcCCcCCCC--ccEEEEecCCCC
Q psy14082 155 GKAPILVA--TDVAARGLDVED--VNTVNIGSLQLS 186 (233)
Q Consensus 155 g~~~iLv~--T~~~~~Gldi~~--v~~VI~~d~P~~ 186 (233)
|.--+|.+ -.-+++|||+.+ ..+|+..++|-.
T Consensus 686 g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 686 GRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYP 721 (821)
T ss_pred CCCeEEEEEeccccccccccccccccEEEEeecCCC
Confidence 34346644 467899999987 678999998743
No 443
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=82.13 E-value=1.6 Score=32.05 Aligned_cols=27 Identities=7% Similarity=-0.189 Sum_probs=19.7
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
..|.-+.+.++.|+||| +++-.+...+
T Consensus 20 ~~~~~i~l~G~lGaGKT-tl~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKT-TLVQGLLQGL 46 (133)
T ss_pred CCCCEEEEEcCCCCCHH-HHHHHHHHHc
Confidence 34556778999999999 5566666654
No 444
>KOG0991|consensus
Probab=82.11 E-value=1.3 Score=35.88 Aligned_cols=25 Identities=8% Similarity=-0.200 Sum_probs=19.0
Q ss_pred ceeEecCCCCCchHHhHHHHHHhhhc
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHISH 35 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l~~ 35 (233)
++++.+|+|+|||.+ +..+...++.
T Consensus 50 ~liisGpPG~GKTTs-i~~LAr~LLG 74 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTS-ILCLARELLG 74 (333)
T ss_pred ceEeeCCCCCchhhH-HHHHHHHHhC
Confidence 578999999999988 4445555554
No 445
>PRK14530 adenylate kinase; Provisional
Probab=82.09 E-value=0.9 Score=36.00 Aligned_cols=18 Identities=11% Similarity=-0.339 Sum_probs=15.5
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.|..+++.+++|||||..
T Consensus 2 ~~~~I~i~G~pGsGKsT~ 19 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQ 19 (215)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567799999999999965
No 446
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=82.09 E-value=34 Score=30.18 Aligned_cols=20 Identities=5% Similarity=-0.286 Sum_probs=16.7
Q ss_pred CCCCCceeEecCCCCCchHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~ 24 (233)
+..|.-+.+.+++|+|||..
T Consensus 134 i~~Gq~~~I~G~sG~GKTtL 153 (411)
T TIGR03496 134 VGRGQRMGIFAGSGVGKSTL 153 (411)
T ss_pred EecCcEEEEECCCCCCHHHH
Confidence 45677788999999999975
No 447
>KOG0391|consensus
Probab=82.08 E-value=2.9 Score=41.38 Aligned_cols=66 Identities=18% Similarity=0.251 Sum_probs=49.2
Q ss_pred ceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCC
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTP 81 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~ 81 (233)
+-|..-.-|-|||.. .|.++.++.=.+. +=||. ||+|||- ....|.-+|++|.+++++...+|...
T Consensus 636 NGILADEmGLGKTIQ-tISllAhLACeeg---nWGPH-LIVVpTs-viLnWEMElKRwcPglKILTYyGs~k 701 (1958)
T KOG0391|consen 636 NGILADEMGLGKTIQ-TISLLAHLACEEG---NWGPH-LIVVPTS-VILNWEMELKRWCPGLKILTYYGSHK 701 (1958)
T ss_pred cceehhhhcccchhH-HHHHHHHHHhccc---CCCCc-eEEeech-hhhhhhHHHhhhCCcceEeeecCCHH
Confidence 345556689999987 6777777764321 22555 8889994 45678899999999999999999744
No 448
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=81.99 E-value=1.8 Score=35.83 Aligned_cols=25 Identities=4% Similarity=-0.287 Sum_probs=18.7
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhcc
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISHQ 36 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~~ 36 (233)
+|+.++|||||+.+ +..++.+-.++
T Consensus 130 viiVGaTGSGKSTt-mAaMi~yRN~~ 154 (375)
T COG5008 130 VIIVGATGSGKSTT-MAAMIGYRNKN 154 (375)
T ss_pred EEEECCCCCCchhh-HHHHhcccccC
Confidence 77899999999977 55666655443
No 449
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=81.81 E-value=2.2 Score=36.98 Aligned_cols=26 Identities=0% Similarity=-0.291 Sum_probs=19.7
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
+..+++.+++|+|||.+ +--++..+.
T Consensus 55 ~~~~lI~G~~GtGKT~l-~~~v~~~l~ 80 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTT-VKKVFEELE 80 (394)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 35699999999999977 555555554
No 450
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=81.76 E-value=1.5 Score=35.52 Aligned_cols=23 Identities=0% Similarity=-0.242 Sum_probs=17.2
Q ss_pred EecCCCCCchHHhHHHHHHhhhcc
Q psy14082 13 SKITNYLLSPPQYMLPAAVHISHQ 36 (233)
Q Consensus 13 ~~a~tGsGKT~~~~lp~l~~l~~~ 36 (233)
+.+|.||||| +|.-.+-+++..+
T Consensus 1 ViGpaGSGKT-T~~~~~~~~~~~~ 23 (238)
T PF03029_consen 1 VIGPAGSGKT-TFCKGLSEWLESN 23 (238)
T ss_dssp -EESTTSSHH-HHHHHHHHHHTTT
T ss_pred CCCCCCCCHH-HHHHHHHHHHHhc
Confidence 4789999999 7777777766543
No 451
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=81.71 E-value=1.6 Score=41.77 Aligned_cols=25 Identities=0% Similarity=-0.343 Sum_probs=18.0
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
.+.++.++||+|||+. +-.++....
T Consensus 437 ghT~I~G~tGaGKTvL-l~~llaq~~ 461 (796)
T COG3451 437 GHTLIIGPTGAGKTVL-LSFLLAQAL 461 (796)
T ss_pred CCeEEECCCCCCHHHH-HHHHHHHHH
Confidence 3789999999999955 444554444
No 452
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=81.70 E-value=4.5 Score=33.50 Aligned_cols=35 Identities=14% Similarity=-0.034 Sum_probs=21.6
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEc
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLA 51 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~ 51 (233)
+=+.+.+++|+|||.+.+- +...+.. .+.+++++.
T Consensus 73 ~vi~l~G~~G~GKTTt~ak-LA~~l~~-------~g~~V~li~ 107 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAK-LANKLKK-------QGKSVLLAA 107 (272)
T ss_pred eEEEEECCCCCcHHHHHHH-HHHHHHh-------cCCEEEEEe
Confidence 3466779999999977433 3333432 245666665
No 453
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=81.67 E-value=35 Score=31.46 Aligned_cols=53 Identities=11% Similarity=0.039 Sum_probs=32.2
Q ss_pred CCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 4 PSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 4 ~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
++-.|.-+-+-++.|+|||.. ++.+.+. .+....+.+.|= |-...+.+.++.+
T Consensus 218 Pi~kGqr~~I~gg~G~GKT~l-----~~~lak~----~~adivVyvg~G--ERG~E~~e~le~f 270 (578)
T TIGR01043 218 PIAKGGTAAIPGPFGSGKTVT-----QHQLAKW----SDADIVVYIGCG--ERGNEMTDVLEEF 270 (578)
T ss_pred cccCCCEEEEecCCCCCHHHH-----HHHHHhc----CCCCEEEEEEec--cChHHHHHHHHHh
Confidence 456677788899999999974 3333221 123333444443 4566777677666
No 454
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=81.58 E-value=1.2 Score=33.76 Aligned_cols=29 Identities=3% Similarity=-0.220 Sum_probs=16.5
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhc
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISH 35 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~ 35 (233)
-.++-+++.+++|+|||.. +--++.++..
T Consensus 22 ~~~~~~ll~G~~G~GKT~l-l~~~~~~~~~ 50 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSL-LRALLDRLAE 50 (185)
T ss_dssp -----EEE-B-TTSSHHHH-HHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 3467799999999999955 5556655554
No 455
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=81.54 E-value=1.8 Score=31.95 Aligned_cols=24 Identities=0% Similarity=-0.287 Sum_probs=17.9
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhc
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISH 35 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~ 35 (233)
+.+.++.|||||.. +--++..+.+
T Consensus 3 v~VvG~~~sGKTTl-~~~Li~~l~~ 26 (140)
T PF03205_consen 3 VQVVGPKNSGKTTL-IRKLINELKR 26 (140)
T ss_dssp EEEEESTTSSHHHH-HHHHHHHHHH
T ss_pred EEEECCCCCCHHHH-HHHHHHHHhH
Confidence 46789999999944 6667776654
No 456
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=81.54 E-value=1.7 Score=42.25 Aligned_cols=41 Identities=2% Similarity=-0.039 Sum_probs=30.4
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHH
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRE 55 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~Ptre 55 (233)
..+.++.++||||||+. +-.++..++.. .+++++|+=|-++
T Consensus 475 n~n~~I~G~TGSGKS~l-~~~li~q~~~~------~~~~v~IiD~g~s 515 (893)
T TIGR03744 475 NAHLLILGPTGAGKSAT-LTNLLMQVMAV------HRPRLFIVEAGNS 515 (893)
T ss_pred cccEEEECCCCCCHHHH-HHHHHHHHHHh------cCCEEEEEcCCCC
Confidence 46789999999999976 55566555532 2678888888776
No 457
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=81.51 E-value=2.3 Score=32.26 Aligned_cols=23 Identities=4% Similarity=-0.211 Sum_probs=15.7
Q ss_pred eeEecCCCCCchHHhHHHHHHhhh
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
+++.+++|+|||.. ..-+...+.
T Consensus 3 ~~~~G~~G~GKTt~-~~~la~~~~ 25 (173)
T cd03115 3 ILLVGLQGVGKTTT-AAKLALYLK 25 (173)
T ss_pred EEEECCCCCCHHHH-HHHHHHHHH
Confidence 46789999999976 444444443
No 458
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=81.46 E-value=1.4 Score=30.81 Aligned_cols=24 Identities=4% Similarity=-0.234 Sum_probs=17.8
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhc
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISH 35 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~ 35 (233)
+++.+++|+|||.. +-.++..+.+
T Consensus 1 I~i~G~~G~GKS~l-~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTL-AKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHH-HHHHHHHHHH
Confidence 57889999999976 5556665654
No 459
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=81.38 E-value=20 Score=32.02 Aligned_cols=49 Identities=10% Similarity=-0.085 Sum_probs=28.7
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQI 60 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~ 60 (233)
+-.|.-+.+.+++|+|||... -++..+... ..-..+.|-...+|....+
T Consensus 172 I~~Gqri~I~G~sG~GKTTLL--~~Ia~~~~~-----d~iv~g~Igerg~ev~e~~ 220 (455)
T PRK07960 172 VGRGQRMGLFAGSGVGKSVLL--GMMARYTQA-----DVIVVGLIGERGREVKDFI 220 (455)
T ss_pred ccCCcEEEEECCCCCCccHHH--HHHhCCCCC-----CEEEEEEEEECCeEHHHHH
Confidence 456788899999999999652 233322211 1112345666777775433
No 460
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=81.36 E-value=6.7 Score=37.37 Aligned_cols=56 Identities=21% Similarity=0.333 Sum_probs=44.6
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhC---CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRE---RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD 164 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~ 164 (233)
.+..++|+.++|++-+......+++. ++++..++|+.+.++|..+ + ...+|+++|+
T Consensus 79 ~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i----~-~~~~IivtTP 137 (742)
T TIGR03817 79 DPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWA----R-EHARYVLTNP 137 (742)
T ss_pred CCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHH----h-cCCCEEEECh
Confidence 45679999999999999999998875 5788889999998776432 2 2368999995
No 461
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=81.31 E-value=4.5 Score=34.17 Aligned_cols=45 Identities=4% Similarity=-0.134 Sum_probs=26.9
Q ss_pred eEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHH
Q psy14082 12 FSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQ 61 (233)
Q Consensus 12 i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~ 61 (233)
++.++.|+|||.+.+.-++..+...+ ++..+++...+.++...+.
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~-----~~~~vi~~~~~~~~~~~~~ 45 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP-----PGRRVIIASTYRQARDIFG 45 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS-----S--EEEEEESSHHHHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC-----CCcEEEEecCHHHHHHHHH
Confidence 35788999999998887887777641 2355666655555555433
No 462
>PRK08506 replicative DNA helicase; Provisional
Probab=81.30 E-value=2.4 Score=38.08 Aligned_cols=52 Identities=10% Similarity=-0.065 Sum_probs=32.7
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
.|.=+++.|.||.||| +|++-++..... .+..+++++. -.=..|+..++...
T Consensus 191 ~G~LivIaarpg~GKT-~fal~ia~~~~~-------~g~~V~~fSl-EMs~~ql~~Rlla~ 242 (472)
T PRK08506 191 KGDLIIIAARPSMGKT-TLCLNMALKALN-------QDKGVAFFSL-EMPAEQLMLRMLSA 242 (472)
T ss_pred CCceEEEEcCCCCChH-HHHHHHHHHHHh-------cCCcEEEEeC-cCCHHHHHHHHHHH
Confidence 4555778888999999 557766666543 2445676653 24455666555443
No 463
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=81.27 E-value=3.6 Score=38.06 Aligned_cols=47 Identities=9% Similarity=-0.056 Sum_probs=30.5
Q ss_pred ceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTV 63 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~ 63 (233)
-+++.+++|+|||.. +..+.+.+... ..+.+++++ +..+++.+....
T Consensus 316 pL~LyG~sGsGKTHL-L~AIa~~a~~~-----~~g~~V~Yi-taeef~~el~~a 362 (617)
T PRK14086 316 PLFIYGESGLGKTHL-LHAIGHYARRL-----YPGTRVRYV-SSEEFTNEFINS 362 (617)
T ss_pred cEEEECCCCCCHHHH-HHHHHHHHHHh-----CCCCeEEEe-eHHHHHHHHHHH
Confidence 488999999999976 55566665532 235566655 455666555443
No 464
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=81.27 E-value=7.8 Score=36.71 Aligned_cols=57 Identities=12% Similarity=-0.031 Sum_probs=46.1
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhh----CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRR----ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV 165 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~ 165 (233)
...+.++.|.++|..-+...++.+.. .|+++.+++|+++.++|...++ .+|+++|+.
T Consensus 94 aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 94 ALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred HHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcC------CCEEEECCC
Confidence 34566899999999888888777754 5899999999999888776653 689999975
No 465
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=81.24 E-value=39 Score=31.22 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=31.5
Q ss_pred CCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 4 PSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 4 ~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
++..|.-+-+-++.|+|||.. .+.+.++. +.. ++|.+--=|-...+.+.+..|
T Consensus 223 Pi~kGq~~~Ipg~~G~GKTvl-----~~~iak~a----~ad--ivVyvg~GERg~E~~e~l~ef 275 (586)
T PRK04192 223 PVAKGGTAAIPGPFGSGKTVT-----QHQLAKWA----DAD--IVIYVGCGERGNEMTEVLEEF 275 (586)
T ss_pred ccccCCeEEEecCCCCCHHHH-----HHHHHhcC----CCC--EEEEEEcCcChHHHHHHHHHH
Confidence 455677777888999999943 23333221 223 444444446666666666666
No 466
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=81.21 E-value=1.2 Score=33.43 Aligned_cols=21 Identities=5% Similarity=-0.406 Sum_probs=14.2
Q ss_pred eeEecCCCCCchHHhHHHHHHh
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVH 32 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~ 32 (233)
+++.+++|||||.. +-.+...
T Consensus 1 i~l~G~~GsGKSTl-a~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTI-ASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHH-HHHHHHh
Confidence 36789999999944 4434433
No 467
>PRK05595 replicative DNA helicase; Provisional
Probab=81.18 E-value=2.2 Score=37.94 Aligned_cols=57 Identities=9% Similarity=-0.001 Sum_probs=33.9
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCC
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSAL 71 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~ 71 (233)
.|.=+++.|.||.||| +|++-+..++.. ..+..+++++. ..-..|+..++.....++
T Consensus 200 ~g~liviaarpg~GKT-~~al~ia~~~a~------~~g~~vl~fSl-Ems~~~l~~R~~a~~~~v 256 (444)
T PRK05595 200 KGDMILIAARPSMGKT-TFALNIAEYAAL------REGKSVAIFSL-EMSKEQLAYKLLCSEANV 256 (444)
T ss_pred CCcEEEEEecCCCChH-HHHHHHHHHHHH------HcCCcEEEEec-CCCHHHHHHHHHHHhcCC
Confidence 3555677888999999 556666655432 12556777754 234555555554443333
No 468
>KOG0060|consensus
Probab=81.15 E-value=0.91 Score=41.24 Aligned_cols=29 Identities=10% Similarity=-0.179 Sum_probs=22.0
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhc
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISH 35 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~ 35 (233)
+++|+++++.+|+|+|||-. +-++.-+..
T Consensus 458 V~~g~~LLItG~sG~GKtSL--lRvlggLWp 486 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSL--LRVLGGLWP 486 (659)
T ss_pred ecCCCeEEEECCCCCchhHH--HHHHhcccc
Confidence 56899999999999999943 445555544
No 469
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=81.15 E-value=6 Score=40.48 Aligned_cols=72 Identities=22% Similarity=0.240 Sum_probs=53.3
Q ss_pred CCCeEEEEecchhHHHHHHHHHhh----------------CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc---
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRR----------------ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV--- 165 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~----------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~--- 165 (233)
.+.++|+.++++.-+..+.+.|+. .++++...||+.+.++|.+.++ ...+|||+|.-
T Consensus 36 ~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~----~ppdILVTTPEsL~ 111 (1490)
T PRK09751 36 KTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTR----NPPDILITTPESLY 111 (1490)
T ss_pred CCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhc----CCCCEEEecHHHHH
Confidence 356899999999999988887752 3678899999999999877554 36789999942
Q ss_pred --Cc-CC-cCCCCccEEEE
Q psy14082 166 --AA-RG-LDVEDVNTVNI 180 (233)
Q Consensus 166 --~~-~G-ldi~~v~~VI~ 180 (233)
+. ++ ..+.++++||.
T Consensus 112 ~LLtsk~r~~L~~Vr~VIV 130 (1490)
T PRK09751 112 LMLTSRARETLRGVETVII 130 (1490)
T ss_pred HHHhhhhhhhhccCCEEEE
Confidence 22 22 24667777663
No 470
>KOG1015|consensus
Probab=81.04 E-value=2.5 Score=40.82 Aligned_cols=52 Identities=13% Similarity=-0.043 Sum_probs=38.7
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
+|..=.-|.|||+. ++..++.++...+ ..-.++||+||- .-+..|.+.|.+|
T Consensus 699 cILAHcMGLGKTlQ-VvtflhTvL~c~k---lg~ktaLvV~Pl-Nt~~NW~~EFekW 750 (1567)
T KOG1015|consen 699 CILAHCMGLGKTLQ-VVTFLHTVLLCDK---LGFKTALVVCPL-NTALNWMNEFEKW 750 (1567)
T ss_pred hHHHHhhcccceeh-hhHHHHHHHHhhc---cCCceEEEEcch-HHHHHHHHHHHHh
Confidence 44444568999988 6777777775432 446789999996 5677899999998
No 471
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=81.00 E-value=3 Score=35.09 Aligned_cols=19 Identities=5% Similarity=-0.436 Sum_probs=15.4
Q ss_pred CCCCceeEecCCCCCchHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~ 24 (233)
+.|.=+.+.+++|+|||..
T Consensus 93 ~~g~i~ei~G~~g~GKT~l 111 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQI 111 (310)
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 4566678999999999955
No 472
>KOG1001|consensus
Probab=80.74 E-value=0.04 Score=51.14 Aligned_cols=82 Identities=13% Similarity=0.123 Sum_probs=71.1
Q ss_pred CeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCC-CCEE-EecccCcCCcCCCCccEEEEecCC
Q psy14082 107 FKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGK-APIL-VATDVAARGLDVEDVNTVNIGSLQ 184 (233)
Q Consensus 107 ~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~iL-v~T~~~~~Gldi~~v~~VI~~d~P 184 (233)
.+++||+.-..-+..+.-.|...++....+.|.|+...|...+..|..+. ..+| ++..+..-|+++....+|+..|+=
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 39999999999998888888888888888999999999999999998553 3344 677889999999999999999987
Q ss_pred CCcc
Q psy14082 185 LSAN 188 (233)
Q Consensus 185 ~~~~ 188 (233)
+++.
T Consensus 620 wnp~ 623 (674)
T KOG1001|consen 620 WNPA 623 (674)
T ss_pred cChH
Confidence 7764
No 473
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=80.63 E-value=3.3 Score=27.46 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=33.4
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhhCCCe-eEEEeCCCC
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRRERHS-AICIHGDKT 141 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 141 (233)
..+..+++++|.+...+...+..|.+.|+. +..+.|++.
T Consensus 53 ~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 53 LDKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 456689999999999999999999999987 888888864
No 474
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=80.53 E-value=1.4 Score=35.15 Aligned_cols=28 Identities=11% Similarity=-0.100 Sum_probs=20.7
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhc
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISH 35 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~ 35 (233)
-.|.=+.+++|+|||||. ++-+++.|-.
T Consensus 26 ~~Gevv~iiGpSGSGKST--lLRclN~LE~ 53 (240)
T COG1126 26 EKGEVVVIIGPSGSGKST--LLRCLNGLEE 53 (240)
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHHCCcC
Confidence 356678899999999994 4556766643
No 475
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=80.50 E-value=5.6 Score=35.76 Aligned_cols=55 Identities=20% Similarity=-0.019 Sum_probs=41.1
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
..|.. -+.+--|||||...++-+.+..+. ++.-+.+|=+-|+-|+.|+.+...+|
T Consensus 175 ~~G~q-rIrGLAGSGKT~~La~Kaa~lh~k------nPd~~I~~Tfftk~L~s~~r~lv~~F 229 (660)
T COG3972 175 GFGKQ-RIRGLAGSGKTELLAHKAAELHSK------NPDSRIAFTFFTKILASTMRTLVPEF 229 (660)
T ss_pred CCchh-hhhcccCCCchhHHHHHHHHHhcC------CCCceEEEEeehHHHHHHHHHHHHHH
Confidence 34555 346668999998866555444433 45778999999999999999999988
No 476
>KOG0326|consensus
Probab=80.37 E-value=3.6 Score=34.80 Aligned_cols=126 Identities=17% Similarity=0.266 Sum_probs=77.7
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhh----CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEec-----ccCcCCcC-C
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRR----ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVAT-----DVAARGLD-V 172 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T-----~~~~~Gld-i 172 (233)
....-+++|.+++++-+-...+...+ .++.+.+.+|+.+-. ..+++-. +...++|+| |...+|+- +
T Consensus 150 ~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lr--DDI~Rl~--~~VH~~vgTPGRIlDL~~KgVa~l 225 (459)
T KOG0326|consen 150 KKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLR--DDIMRLN--QTVHLVVGTPGRILDLAKKGVADL 225 (459)
T ss_pred cccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccc--cceeeec--CceEEEEcCChhHHHHHhcccccc
Confidence 44556899999999977665554433 478999999997744 3554432 457888988 45555542 2
Q ss_pred CCccEEE------------------------------Eec--CCCCccccc---------------------ceeeEEee
Q psy14082 173 EDVNTVN------------------------------IGS--LQLSANHNI---------------------SQVIEVVQ 199 (233)
Q Consensus 173 ~~v~~VI------------------------------~~d--~P~~~~~~i---------------------~~~~~~~~ 199 (233)
.++..++ .|+ +|.....|. .+...|+.
T Consensus 226 s~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~ 305 (459)
T KOG0326|consen 226 SDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVE 305 (459)
T ss_pred hhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeec
Confidence 2222221 121 233322222 37778888
Q ss_pred cchHHHHHHHHHHhhc-CcccccccchhhHhhhc
Q psy14082 200 DYEKEKRLFSLIRELG-KYTLITQESSSTLSEMV 232 (233)
Q Consensus 200 ~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~l~ 232 (233)
+..|.-++.-++.+.. +..++|..+..+.+-||
T Consensus 306 e~qKvhCLntLfskLqINQsIIFCNS~~rVELLA 339 (459)
T KOG0326|consen 306 ERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLA 339 (459)
T ss_pred hhhhhhhHHHHHHHhcccceEEEeccchHhHHHH
Confidence 8778877777777755 56666666666655443
No 477
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=80.35 E-value=1.6 Score=37.32 Aligned_cols=26 Identities=4% Similarity=-0.243 Sum_probs=20.0
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
+..+++.+|+|+|||.+ +-.++..+.
T Consensus 40 ~~~i~I~G~~GtGKT~l-~~~~~~~l~ 65 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAV-TKYVMKELE 65 (365)
T ss_pred CCcEEEECCCCCCHHHH-HHHHHHHHH
Confidence 35799999999999976 555666554
No 478
>PRK06904 replicative DNA helicase; Validated
Probab=80.26 E-value=4.6 Score=36.28 Aligned_cols=58 Identities=10% Similarity=-0.030 Sum_probs=34.1
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCc
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALR 72 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~ 72 (233)
.|.=+++.|.||.|||. |++-+....... .+..+++++.- --..|+..++-....++.
T Consensus 220 ~G~LiiIaarPg~GKTa-falnia~~~a~~------~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~ 277 (472)
T PRK06904 220 PSDLIIVAARPSMGKTT-FAMNLCENAAMA------SEKPVLVFSLE-MPAEQIMMRMLASLSRVD 277 (472)
T ss_pred CCcEEEEEeCCCCChHH-HHHHHHHHHHHh------cCCeEEEEecc-CCHHHHHHHHHHhhCCCC
Confidence 35557778889999994 566666554321 24457776532 445565555554433333
No 479
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=80.22 E-value=1 Score=35.63 Aligned_cols=18 Identities=6% Similarity=-0.313 Sum_probs=13.2
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.+++++..+++|+|||..
T Consensus 21 G~h~lLl~GppGtGKTml 38 (206)
T PF01078_consen 21 GGHHLLLIGPPGTGKTML 38 (206)
T ss_dssp CC--EEEES-CCCTHHHH
T ss_pred CCCCeEEECCCCCCHHHH
Confidence 477899999999999965
No 480
>KOG0345|consensus
Probab=80.20 E-value=5.2 Score=35.59 Aligned_cols=69 Identities=14% Similarity=0.262 Sum_probs=51.7
Q ss_pred eEEEEecchhHHHHHHHHHhh-----CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----cCcC---CcCCCC
Q psy14082 108 KVIVFVETKKKVEDITRALRR-----ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----VAAR---GLDVED 174 (233)
Q Consensus 108 k~iIf~~~~~~~~~l~~~L~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~~---Gldi~~ 174 (233)
-.+|..+|++-+.++.+.+.. .++++..+-||++.+ +-++.|++...+|||+|+ ++.+ ++|+.+
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~---~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVE---EDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHH---HHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 469999999998877766643 367899999996644 456778888899999994 4444 566667
Q ss_pred ccEEE
Q psy14082 175 VNTVN 179 (233)
Q Consensus 175 v~~VI 179 (233)
.+++|
T Consensus 158 Le~LV 162 (567)
T KOG0345|consen 158 LEILV 162 (567)
T ss_pred cceEE
Confidence 77665
No 481
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=80.19 E-value=3.7 Score=36.58 Aligned_cols=45 Identities=9% Similarity=-0.021 Sum_probs=30.1
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQT 62 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~ 62 (233)
+.+++.+++|+|||.. +-++.+.+... +.+++++.. .++..+..+
T Consensus 142 npl~L~G~~G~GKTHL-l~Ai~~~l~~~-------~~~v~yi~~-~~f~~~~~~ 186 (445)
T PRK12422 142 NPIYLFGPEGSGKTHL-MQAAVHALRES-------GGKILYVRS-ELFTEHLVS 186 (445)
T ss_pred ceEEEEcCCCCCHHHH-HHHHHHHHHHc-------CCCEEEeeH-HHHHHHHHH
Confidence 4589999999999966 55666666532 456776654 455554433
No 482
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=79.96 E-value=0.69 Score=40.69 Aligned_cols=24 Identities=13% Similarity=-0.097 Sum_probs=20.1
Q ss_pred CCCCCCCceeEecCCCCCchHHhH
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQYM 26 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~~~ 26 (233)
|-+-++.+++..+|+|+|||..|.
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHH
Confidence 556678999999999999996654
No 483
>KOG4150|consensus
Probab=79.84 E-value=3 Score=38.07 Aligned_cols=175 Identities=12% Similarity=0.012 Sum_probs=92.9
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh---hcCCcE--EEE
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF---SSALRN--ICI 76 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~---~~~~~~--~~~ 76 (233)
|-.+..|+++++-.+|.+||.++|.+..+..+.. ......+++.|+.|+++.-.+-+.-. .+..+. .-.
T Consensus 295 ~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~------~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~ 368 (1034)
T KOG4150|consen 295 LKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL------CHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEM 368 (1034)
T ss_pred HhhhhhcccccccchhhcCCccCcccchhhhhhc------CcccceecchhHHHHhhccCCceEEEEEehhhhhcceeec
Confidence 3455679999999999999999999988876654 23445788999999887643322211 111111 111
Q ss_pred EcC-CCCCCee--------EEe---------ccc---hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhC------
Q psy14082 77 FGG-TPKGPQD--------CLP---------LHR---FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRE------ 129 (233)
Q Consensus 77 ~gg-~~~~~~~--------lv~---------l~r---~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~------ 129 (233)
+.| +...... +.. |.+ +...+=+.....-..-.|-...+..++...-..|.+.
T Consensus 369 ~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~ 448 (1034)
T KOG4150|consen 369 SDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEA 448 (1034)
T ss_pred ccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHHh
Confidence 111 1111100 111 000 0000000112223334455556666665555555432
Q ss_pred CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCc
Q psy14082 130 RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSA 187 (233)
Q Consensus 130 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~ 187 (233)
+..-.++.++.+.+++.+..+...+-.---||.-|-. .....+.+.|++|--+
T Consensus 449 ~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGS-----Ps~~K~~V~WNP~~~P 501 (1034)
T KOG4150|consen 449 SINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGS-----PSSEKLFVLWNPSAPP 501 (1034)
T ss_pred hcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCC-----CCccceEEEeCCCCCC
Confidence 4455678888888888888777654322234443322 2245677778876433
No 484
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=79.81 E-value=25 Score=28.40 Aligned_cols=67 Identities=10% Similarity=0.165 Sum_probs=49.0
Q ss_pred cCCCCeEEEEecc------------hhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhC---CCCCEEEecccCc
Q psy14082 103 KNPAFKVIVFVET------------KKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQ---GKAPILVATDVAA 167 (233)
Q Consensus 103 ~~~~~k~iIf~~~------------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~~iLv~T~~~~ 167 (233)
+.+.+.+||+.|. ...++.+++.|++.|+.+ ..+.+.+.++-.+.+++|.+ ....++++. .++
T Consensus 6 ~~~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V-~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~s 83 (243)
T cd00032 6 SKRRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEV-EVKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILS 83 (243)
T ss_pred CCCCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEE-EEeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECC
Confidence 3456677777774 366899999999999987 56788999999999999985 234444443 455
Q ss_pred CCcC
Q psy14082 168 RGLD 171 (233)
Q Consensus 168 ~Gld 171 (233)
.|..
T Consensus 84 HG~~ 87 (243)
T cd00032 84 HGEE 87 (243)
T ss_pred CCCC
Confidence 5543
No 485
>PHA02542 41 41 helicase; Provisional
Probab=79.80 E-value=2.5 Score=37.99 Aligned_cols=50 Identities=10% Similarity=-0.052 Sum_probs=29.7
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAK 65 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~ 65 (233)
.|.=+++.|.||.||| +|++-+...... .+..++++. .-.-..|+..++.
T Consensus 189 ~G~LiiIaarPgmGKT-tfalniA~~~a~-------~g~~Vl~fS-LEM~~~ql~~Rl~ 238 (473)
T PHA02542 189 RKTLNVLLAGVNVGKS-LGLCSLAADYLQ-------QGYNVLYIS-MEMAEEVIAKRID 238 (473)
T ss_pred CCcEEEEEcCCCccHH-HHHHHHHHHHHh-------cCCcEEEEe-ccCCHHHHHHHHH
Confidence 3555778889999999 456666655542 244567665 2222344444443
No 486
>PRK05922 type III secretion system ATPase; Validated
Probab=79.77 E-value=39 Score=30.08 Aligned_cols=20 Identities=5% Similarity=-0.386 Sum_probs=16.5
Q ss_pred CCCCCceeEecCCCCCchHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~ 24 (233)
+-.|.-+.+.+++|+|||..
T Consensus 154 I~~GqrigI~G~nG~GKSTL 173 (434)
T PRK05922 154 LGKGQRIGVFSEPGSGKSSL 173 (434)
T ss_pred EcCCcEEEEECCCCCChHHH
Confidence 45677888999999999955
No 487
>PHA02244 ATPase-like protein
Probab=79.77 E-value=1.8 Score=37.45 Aligned_cols=25 Identities=12% Similarity=-0.226 Sum_probs=18.7
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAV 31 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~ 31 (233)
-.+.++++.+|||+|||.. +-.+..
T Consensus 117 ~~~~PVLL~GppGtGKTtL-A~aLA~ 141 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHI-AEQIAE 141 (383)
T ss_pred hcCCCEEEECCCCCCHHHH-HHHHHH
Confidence 3578899999999999955 343443
No 488
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=79.68 E-value=2.4 Score=35.74 Aligned_cols=44 Identities=2% Similarity=-0.032 Sum_probs=25.6
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHH
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQI 60 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~ 60 (233)
.++-+||||||+-- +..++...-.. ...-.+.+++|+..-..-.
T Consensus 90 ~~VYGPTG~GKSqL-----lRNLis~~lI~-P~PETVfFItP~~~mIpp~ 133 (369)
T PF02456_consen 90 GVVYGPTGSGKSQL-----LRNLISCQLIQ-PPPETVFFITPQKDMIPPQ 133 (369)
T ss_pred EEEECCCCCCHHHH-----HHHhhhcCccc-CCCCceEEECCCCCCCCHH
Confidence 56789999999933 33333321111 1233588899887655433
No 489
>KOG0736|consensus
Probab=79.67 E-value=8 Score=36.72 Aligned_cols=125 Identities=12% Similarity=0.021 Sum_probs=64.3
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHH-----------HHhhc------CCcE
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVA-----------KEFSS------ALRN 73 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~-----------~~~~~------~~~~ 73 (233)
+++.+++|||||.+ +-.....+-. =++=++--||+.+..+.. +...+ ++.+
T Consensus 434 vLLhG~~g~GK~t~-V~~vas~lg~-----------h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dv 501 (953)
T KOG0736|consen 434 VLLHGPPGSGKTTV-VRAVASELGL-----------HLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDV 501 (953)
T ss_pred EEEeCCCCCChHHH-HHHHHHHhCC-----------ceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccce
Confidence 78899999999977 3334443321 244555556665544332 22211 1111
Q ss_pred EEEEcCCCCCCeeEEeccchhhhchHHHh---cCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHH
Q psy14082 74 ICIFGGTPKGPQDCLPLHRFVFNCQYEMA---KNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLN 150 (233)
Q Consensus 74 ~~~~gg~~~~~~~lv~l~r~~~~~~~~~~---~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 150 (233)
..+.. +... -.|+...++.++. .....+..+|+.+..+.+.+-..++... ...+--+.++.++|.++++
T Consensus 502 l~id~--dgge-----d~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f-~~ei~~~~lse~qRl~iLq 573 (953)
T KOG0736|consen 502 LGIDQ--DGGE-----DARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLF-LHEIEVPALSEEQRLEILQ 573 (953)
T ss_pred eeecC--CCch-----hHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhh-hhhccCCCCCHHHHHHHHH
Confidence 11111 1111 1234455555443 2223445566666677776666664432 1122235688999999998
Q ss_pred HhhCC
Q psy14082 151 DFRQG 155 (233)
Q Consensus 151 ~f~~g 155 (233)
.+.+.
T Consensus 574 ~y~~~ 578 (953)
T KOG0736|consen 574 WYLNH 578 (953)
T ss_pred HHHhc
Confidence 87643
No 490
>PF13871 Helicase_C_4: Helicase_C-like
Probab=79.66 E-value=10 Score=31.54 Aligned_cols=67 Identities=21% Similarity=0.264 Sum_probs=48.4
Q ss_pred HHHHHhhCCCCCEEEecccCcCCcCCCC--------ccEEEEecCCCCccccc---------ce-----eeEEeecchHH
Q psy14082 147 YVLNDFRQGKAPILVATDVAARGLDVED--------VNTVNIGSLQLSANHNI---------SQ-----VIEVVQDYEKE 204 (233)
Q Consensus 147 ~~~~~f~~g~~~iLv~T~~~~~Gldi~~--------v~~VI~~d~P~~~~~~i---------~~-----~~~~~~~~~~~ 204 (233)
...+.|.+|+.+|+|.++..+.|+.+.+ -.+-|...+|||++..| ++ ...++++-.-+
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 5667899999999999999999987642 34567789999998444 22 33355555556
Q ss_pred HHHHHHHHh
Q psy14082 205 KRLFSLIRE 213 (233)
Q Consensus 205 ~~~~~~i~~ 213 (233)
.++...+.+
T Consensus 132 ~Rfas~va~ 140 (278)
T PF13871_consen 132 RRFASTVAR 140 (278)
T ss_pred HHHHHHHHH
Confidence 777766654
No 491
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=79.64 E-value=4.5 Score=27.30 Aligned_cols=38 Identities=8% Similarity=0.042 Sum_probs=31.9
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCC-eeEEEeCCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERH-SAICIHGDKT 141 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 141 (233)
....+++++|.+...+...+..|+..|+ ++..+.|+|.
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 4567899999998888888999999998 5788888874
No 492
>PRK13768 GTPase; Provisional
Probab=79.64 E-value=2.3 Score=34.72 Aligned_cols=23 Identities=9% Similarity=-0.249 Sum_probs=16.1
Q ss_pred eeEecCCCCCchHHhHHHHHHhhh
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
+++.++.|+|||.. +.-+...+.
T Consensus 5 i~v~G~~G~GKTt~-~~~~~~~l~ 27 (253)
T PRK13768 5 VFFLGTAGSGKTTL-TKALSDWLE 27 (253)
T ss_pred EEEECCCCccHHHH-HHHHHHHHH
Confidence 57889999999964 444554443
No 493
>PLN02165 adenylate isopentenyltransferase
Probab=79.38 E-value=1.8 Score=36.90 Aligned_cols=25 Identities=4% Similarity=-0.302 Sum_probs=17.8
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
|.-+++.+|||||||.. +.-+...+
T Consensus 43 g~iivIiGPTGSGKStL-A~~LA~~l 67 (334)
T PLN02165 43 DKVVVIMGATGSGKSRL-SVDLATRF 67 (334)
T ss_pred CCEEEEECCCCCcHHHH-HHHHHHHc
Confidence 55688899999999966 34444443
No 494
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=79.32 E-value=7.7 Score=38.14 Aligned_cols=69 Identities=19% Similarity=0.232 Sum_probs=51.7
Q ss_pred EEEecchhHHHHHHHHHhhC----C--CeeEEEeCCCCHHHHHHHHHHh----------------------hC----CCC
Q psy14082 110 IVFVETKKKVEDITRALRRE----R--HSAICIHGDKTQQDRDYVLNDF----------------------RQ----GKA 157 (233)
Q Consensus 110 iIf~~~~~~~~~l~~~L~~~----~--~~~~~~~~~~~~~~r~~~~~~f----------------------~~----g~~ 157 (233)
+|-+++.+.+-.++..|... + +...++|+..+...|..+.+.. ++ +..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 77788888888888888654 2 4567899998777776655442 12 356
Q ss_pred CEEEecccCcCCcCCCCccEEE
Q psy14082 158 PILVATDVAARGLDVEDVNTVN 179 (233)
Q Consensus 158 ~iLv~T~~~~~Gldi~~v~~VI 179 (233)
-|+|+|.+.+-|+|+ +.|++|
T Consensus 840 ~i~v~Tqv~E~g~D~-dfd~~~ 860 (1110)
T TIGR02562 840 FIVLATPVEEVGRDH-DYDWAI 860 (1110)
T ss_pred eEEEEeeeEEEEecc-cCCeee
Confidence 799999999999998 677776
No 495
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=79.25 E-value=3.1 Score=34.86 Aligned_cols=28 Identities=4% Similarity=-0.206 Sum_probs=19.4
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
-.+.-+.+.+++|+|||.. +.-+...+.
T Consensus 32 ~~~~~i~i~G~~G~GKttl-~~~l~~~~~ 59 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTL-LEALGMELR 59 (300)
T ss_pred CCceEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 3466788889999999954 554554443
No 496
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=79.20 E-value=2.8 Score=33.50 Aligned_cols=20 Identities=0% Similarity=-0.275 Sum_probs=13.6
Q ss_pred EecCCCCCchHHhHHHHHHhh
Q psy14082 13 SKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 13 ~~a~tGsGKT~~~~lp~l~~l 33 (233)
+.+++|||||.. +--+...+
T Consensus 4 I~G~sGSGKTTl-a~~L~~~l 23 (220)
T cd02025 4 IAGSVAVGKSTT-ARVLQALL 23 (220)
T ss_pred eeCCCCCCHHHH-HHHHHHHH
Confidence 568999999955 44444444
No 497
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=79.16 E-value=1.2 Score=34.36 Aligned_cols=17 Identities=6% Similarity=-0.316 Sum_probs=14.5
Q ss_pred CCceeEecCCCCCchHH
Q psy14082 8 GCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~ 24 (233)
|.-+++.+|+|||||..
T Consensus 2 g~~i~l~G~sGsGKsTl 18 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSL 18 (186)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 55688999999999965
No 498
>PRK08760 replicative DNA helicase; Provisional
Probab=79.15 E-value=5.2 Score=35.96 Aligned_cols=57 Identities=9% Similarity=-0.080 Sum_probs=34.5
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCC
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSAL 71 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~ 71 (233)
.|.=+++.|.||.||| +|++-+......+ .+..+++++. ..=..|+..++.....++
T Consensus 228 ~G~LivIaarPg~GKT-afal~iA~~~a~~------~g~~V~~fSl-EMs~~ql~~Rl~a~~s~i 284 (476)
T PRK08760 228 PTDLIILAARPAMGKT-TFALNIAEYAAIK------SKKGVAVFSM-EMSASQLAMRLISSNGRI 284 (476)
T ss_pred CCceEEEEeCCCCChh-HHHHHHHHHHHHh------cCCceEEEec-cCCHHHHHHHHHHhhCCC
Confidence 4555778888999999 5576666555321 2445676654 234556666665553333
No 499
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=79.09 E-value=1.3 Score=38.94 Aligned_cols=18 Identities=0% Similarity=-0.426 Sum_probs=15.6
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
...++++.+|||+|||..
T Consensus 107 ~~~~iLl~Gp~GtGKT~l 124 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLL 124 (412)
T ss_pred CCceEEEEcCCCCCHHHH
Confidence 457799999999999966
No 500
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=79.08 E-value=17 Score=25.28 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=43.6
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhhCC---CeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRRER---HSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV 165 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~ 165 (233)
.....++++++++...+++....+.... .....+++......+. ........++++|..
T Consensus 27 ~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~t~~ 88 (144)
T cd00046 27 SLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLLSGKTDIVVGTPG 88 (144)
T ss_pred cccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHhcCCCCEEEECcH
Confidence 3466899999999999998888886544 7788888876655544 222356788999865
Done!