Query psy14082
Match_columns 233
No_of_seqs 167 out of 1762
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 19:07:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 3.3E-38 1.1E-42 275.5 19.9 200 1-201 86-407 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 2.3E-35 7.7E-40 255.0 18.9 216 1-223 67-403 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 1E-34 3.5E-39 251.1 20.4 202 1-202 45-384 (417)
4 1xti_A Probable ATP-dependent 100.0 7.9E-34 2.7E-38 243.4 22.5 216 1-222 38-377 (391)
5 3fht_A ATP-dependent RNA helic 100.0 2.8E-34 9.7E-39 247.6 19.5 216 2-223 56-400 (412)
6 3i5x_A ATP-dependent RNA helic 100.0 1.7E-34 5.9E-39 259.3 18.6 215 2-219 103-465 (563)
7 3eiq_A Eukaryotic initiation f 100.0 1.3E-34 4.6E-39 250.0 17.2 213 2-221 71-405 (414)
8 3sqw_A ATP-dependent RNA helic 100.0 2E-34 6.7E-39 259.9 18.5 215 2-219 52-414 (579)
9 3pey_A ATP-dependent RNA helic 100.0 9E-34 3.1E-38 242.9 20.7 209 2-216 36-370 (395)
10 1s2m_A Putative ATP-dependent 100.0 8.7E-34 3E-38 244.1 20.5 212 2-220 52-382 (400)
11 3fmp_B ATP-dependent RNA helic 100.0 6.9E-35 2.4E-39 257.2 6.2 181 1-186 122-413 (479)
12 1hv8_A Putative ATP-dependent 100.0 8.9E-33 3E-37 234.5 17.2 210 2-220 37-362 (367)
13 1fuu_A Yeast initiation factor 100.0 4.1E-34 1.4E-38 245.3 3.3 186 2-192 52-345 (394)
14 2v1x_A ATP-dependent DNA helic 100.0 2.9E-31 9.8E-36 239.2 19.6 178 1-191 52-352 (591)
15 3tbk_A RIG-I helicase domain; 100.0 1.4E-31 4.6E-36 238.9 13.9 99 104-202 387-508 (555)
16 4a2p_A RIG-I, retinoic acid in 100.0 7.8E-32 2.7E-36 240.8 11.8 89 104-192 388-489 (556)
17 1oyw_A RECQ helicase, ATP-depe 100.0 5.9E-31 2E-35 234.5 17.2 177 2-191 34-321 (523)
18 3fho_A ATP-dependent RNA helic 100.0 4.1E-32 1.4E-36 241.3 8.3 214 1-220 149-488 (508)
19 2z0m_A 337AA long hypothetical 100.0 7.6E-31 2.6E-35 220.3 14.6 175 2-191 25-301 (337)
20 3oiy_A Reverse gyrase helicase 100.0 7.4E-31 2.5E-35 227.3 14.3 176 1-191 29-339 (414)
21 2ykg_A Probable ATP-dependent 100.0 1.2E-30 4.1E-35 239.6 14.6 88 105-192 397-497 (696)
22 4a2q_A RIG-I, retinoic acid in 100.0 4.3E-30 1.5E-34 239.3 13.4 99 104-202 629-750 (797)
23 4a2w_A RIG-I, retinoic acid in 100.0 1.2E-29 4.3E-34 239.3 12.4 89 104-192 629-730 (936)
24 4gl2_A Interferon-induced heli 100.0 2.4E-30 8.1E-35 237.7 6.9 86 106-191 400-499 (699)
25 4ddu_A Reverse gyrase; topoiso 100.0 1.5E-28 5.1E-33 234.3 13.6 170 1-185 86-388 (1104)
26 2jlq_A Serine protease subunit 100.0 3.7E-29 1.3E-33 219.3 8.3 174 1-191 11-288 (451)
27 3l9o_A ATP-dependent RNA helic 100.0 3.2E-28 1.1E-32 232.2 14.2 178 1-188 192-562 (1108)
28 1gku_B Reverse gyrase, TOP-RG; 100.0 3.2E-28 1.1E-32 231.7 13.1 169 1-184 64-352 (1054)
29 1wp9_A ATP-dependent RNA helic 100.0 7.9E-28 2.7E-32 210.3 14.3 106 104-209 359-483 (494)
30 1yks_A Genome polyprotein [con 100.0 2.2E-28 7.6E-33 213.6 10.7 170 4-191 4-276 (440)
31 2wv9_A Flavivirin protease NS2 99.9 3.6E-28 1.2E-32 221.4 11.4 177 1-191 228-510 (673)
32 2whx_A Serine protease/ntpase/ 99.9 8.4E-28 2.9E-32 217.5 13.3 172 1-191 179-455 (618)
33 1tf5_A Preprotein translocase 99.9 5.6E-28 1.9E-32 220.7 12.1 96 105-202 431-546 (844)
34 2z83_A Helicase/nucleoside tri 99.9 3E-28 1E-32 213.9 6.4 174 5-191 18-290 (459)
35 3o8b_A HCV NS3 protease/helica 99.9 2.8E-27 9.6E-32 213.6 10.6 170 2-191 225-494 (666)
36 2v6i_A RNA helicase; membrane, 99.9 4.5E-27 1.5E-31 204.9 11.0 168 7-191 1-268 (431)
37 1gm5_A RECG; helicase, replica 99.9 5.8E-28 2E-32 222.7 5.4 170 9-186 390-669 (780)
38 2va8_A SSO2462, SKI2-type heli 99.9 1E-25 3.4E-30 207.7 20.3 183 2-191 39-384 (715)
39 2oca_A DAR protein, ATP-depend 99.9 5.2E-27 1.8E-31 208.3 11.2 181 3-191 123-433 (510)
40 2xgj_A ATP-dependent RNA helic 99.9 1.4E-26 4.6E-31 219.3 14.4 180 2-191 95-475 (1010)
41 2zj8_A DNA helicase, putative 99.9 5.3E-26 1.8E-30 209.7 17.1 183 2-191 32-363 (720)
42 2fwr_A DNA repair protein RAD2 99.9 1.6E-27 5.4E-32 209.8 5.5 171 3-191 103-429 (472)
43 2eyq_A TRCF, transcription-rep 99.9 2.1E-26 7.1E-31 220.7 12.5 173 8-188 622-897 (1151)
44 2p6r_A Afuhel308 helicase; pro 99.9 4E-26 1.4E-30 209.9 13.9 180 2-191 34-364 (702)
45 2fsf_A Preprotein translocase 99.9 5.3E-26 1.8E-30 207.4 12.8 97 105-203 440-585 (853)
46 4a4z_A Antiviral helicase SKI2 99.9 3E-26 1E-30 216.8 9.7 81 1-89 47-129 (997)
47 3rc3_A ATP-dependent RNA helic 99.9 4.3E-25 1.5E-29 200.9 14.8 163 5-183 152-398 (677)
48 1nkt_A Preprotein translocase 99.9 4.7E-25 1.6E-29 201.6 13.9 98 105-204 459-620 (922)
49 4f92_B U5 small nuclear ribonu 99.9 4.6E-24 1.6E-28 210.2 16.0 175 6-180 93-428 (1724)
50 4f92_B U5 small nuclear ribonu 99.9 5.7E-24 2E-28 209.5 16.5 168 7-180 941-1263(1724)
51 3h1t_A Type I site-specific re 99.9 9.4E-24 3.2E-28 190.6 11.1 95 104-199 437-545 (590)
52 2hjv_A ATP-dependent RNA helic 99.9 1.9E-22 6.6E-27 153.2 13.8 120 101-222 30-161 (163)
53 2xau_A PRE-mRNA-splicing facto 99.9 2.1E-23 7.3E-28 193.0 8.3 81 103-183 300-396 (773)
54 1t5i_A C_terminal domain of A 99.9 6.2E-22 2.1E-26 151.7 14.5 123 100-223 25-159 (172)
55 3dmq_A RNA polymerase-associat 99.9 1.1E-21 3.6E-26 185.8 18.6 110 104-213 501-627 (968)
56 1fuk_A Eukaryotic initiation f 99.9 2.2E-21 7.4E-26 147.6 16.1 122 99-222 23-156 (165)
57 1z63_A Helicase of the SNF2/RA 99.9 4.8E-21 1.7E-25 169.5 18.8 109 105-213 340-465 (500)
58 3eaq_A Heat resistant RNA depe 99.9 1.6E-21 5.3E-26 154.4 13.8 123 97-221 22-156 (212)
59 2rb4_A ATP-dependent RNA helic 99.9 2.6E-21 9E-26 148.6 14.5 121 100-222 28-166 (175)
60 3jux_A Protein translocase sub 99.9 4.4E-21 1.5E-25 172.5 17.4 98 105-204 473-590 (822)
61 2jgn_A DBX, DDX3, ATP-dependen 99.8 5.4E-21 1.9E-25 148.2 10.3 124 105-232 45-180 (185)
62 1z3i_X Similar to RAD54-like; 99.8 1.7E-19 5.8E-24 164.3 21.7 109 105-213 415-540 (644)
63 3i32_A Heat resistant RNA depe 99.8 1.5E-20 5.1E-25 156.0 13.4 121 99-221 21-153 (300)
64 2p6n_A ATP-dependent RNA helic 99.8 8.9E-21 3E-25 147.7 11.1 124 105-231 53-188 (191)
65 3mwy_W Chromo domain-containin 99.8 2.2E-19 7.6E-24 167.2 20.3 111 104-214 570-697 (800)
66 2yjt_D ATP-dependent RNA helic 99.7 1.4E-21 4.9E-26 149.4 0.0 91 102-192 26-116 (170)
67 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 4.2E-18 1.4E-22 161.1 12.4 86 105-191 536-683 (1038)
68 3fe2_A Probable ATP-dependent 99.7 5.7E-17 1.9E-21 130.4 11.9 148 1-148 59-225 (242)
69 3fmo_B ATP-dependent RNA helic 99.7 3.9E-17 1.3E-21 135.6 6.9 91 1-96 122-224 (300)
70 3iuy_A Probable ATP-dependent 99.7 2.4E-16 8.2E-21 125.5 10.4 83 1-83 50-134 (228)
71 1z5z_A Helicase of the SNF2/RA 99.7 9.6E-16 3.3E-20 125.4 12.9 109 105-213 111-236 (271)
72 1wrb_A DJVLGB; RNA helicase, D 99.6 1.6E-15 5.6E-20 122.6 12.5 153 1-154 53-232 (253)
73 3dkp_A Probable ATP-dependent 99.6 4.5E-16 1.5E-20 125.2 9.1 148 1-153 59-232 (245)
74 1vec_A ATP-dependent RNA helic 99.6 2.5E-15 8.6E-20 117.5 12.7 76 2-82 34-112 (206)
75 2d7d_A Uvrabc system protein B 99.6 1.2E-15 4E-20 139.2 12.2 98 105-202 444-557 (661)
76 3bor_A Human initiation factor 99.6 1E-15 3.4E-20 122.8 10.1 148 1-154 60-227 (237)
77 3ber_A Probable ATP-dependent 99.6 3.8E-15 1.3E-19 120.4 13.3 148 1-154 73-240 (249)
78 1c4o_A DNA nucleotide excision 99.6 1.9E-15 6.4E-20 138.0 12.1 98 105-202 438-551 (664)
79 2pl3_A Probable ATP-dependent 99.6 4.3E-15 1.5E-19 118.8 12.1 87 2-89 56-152 (236)
80 2oxc_A Probable ATP-dependent 99.6 5.2E-16 1.8E-20 123.8 6.5 76 2-82 55-133 (230)
81 1qde_A EIF4A, translation init 99.6 5E-15 1.7E-19 117.3 11.7 147 2-154 45-209 (224)
82 1q0u_A Bstdead; DEAD protein, 99.6 1.4E-15 4.7E-20 120.4 8.1 75 2-81 35-115 (219)
83 2gxq_A Heat resistant RNA depe 99.6 9.7E-15 3.3E-19 114.2 12.2 149 2-153 32-197 (207)
84 3ly5_A ATP-dependent RNA helic 99.6 4.9E-16 1.7E-20 126.5 4.8 81 1-82 84-166 (262)
85 1t6n_A Probable ATP-dependent 99.6 2.1E-15 7.2E-20 119.3 7.1 76 2-82 45-123 (220)
86 2ipc_A Preprotein translocase 99.6 6.2E-15 2.1E-19 135.2 9.2 70 2-81 88-159 (997)
87 3b6e_A Interferon-induced heli 99.3 8.9E-13 3E-17 103.3 1.8 81 2-84 42-124 (216)
88 1rif_A DAR protein, DNA helica 99.2 1E-11 3.4E-16 101.9 4.2 71 5-82 125-197 (282)
89 4a15_A XPD helicase, ATP-depen 99.1 4.7E-11 1.6E-15 108.1 6.3 70 5-81 19-90 (620)
90 3crv_A XPD/RAD3 related DNA he 99.1 7.3E-11 2.5E-15 105.6 4.4 65 6-81 20-86 (551)
91 2fz4_A DNA repair protein RAD2 99.0 1.5E-10 5E-15 92.7 5.2 73 4-89 104-177 (237)
92 2vl7_A XPD; helicase, unknown 98.9 1.4E-09 4.6E-14 97.1 6.5 61 5-78 23-83 (540)
93 3llm_A ATP-dependent RNA helic 98.9 5.1E-10 1.7E-14 89.3 3.0 63 2-67 70-132 (235)
94 1w36_D RECD, exodeoxyribonucle 98.0 2.9E-06 9.9E-11 76.7 3.2 60 2-67 158-219 (608)
95 2vl7_A XPD; helicase, unknown 97.9 7.8E-06 2.7E-10 72.8 5.4 78 104-187 382-465 (540)
96 4b3f_X DNA-binding protein smu 97.0 0.00093 3.2E-08 60.7 6.0 52 8-67 204-256 (646)
97 3hgt_A HDA1 complex subunit 3; 96.9 0.009 3.1E-07 49.4 11.0 97 103-204 122-240 (328)
98 4a15_A XPD helicase, ATP-depen 96.8 0.0013 4.4E-08 59.5 5.2 78 105-186 447-528 (620)
99 1c4o_A DNA nucleotide excision 96.6 0.0038 1.3E-07 56.9 6.9 57 10-77 30-86 (664)
100 2gk6_A Regulator of nonsense t 96.5 0.0029 9.8E-08 57.3 5.2 54 7-67 194-247 (624)
101 1gm5_A RECG; helicase, replica 96.4 0.0084 2.9E-07 55.6 8.2 75 105-179 416-495 (780)
102 3oiy_A Reverse gyrase helicase 96.2 0.014 4.9E-07 49.5 7.7 61 104-164 62-125 (414)
103 2xzl_A ATP-dependent helicase 96.1 0.006 2E-07 56.8 5.6 53 8-67 375-427 (802)
104 3lfu_A DNA helicase II; SF1 he 96.1 0.0095 3.3E-07 53.7 6.7 56 8-67 22-77 (647)
105 2wjy_A Regulator of nonsense t 96.0 0.0074 2.5E-07 56.1 5.3 53 8-67 371-423 (800)
106 2d7d_A Uvrabc system protein B 95.8 0.021 7.3E-07 51.9 7.6 57 10-77 34-90 (661)
107 3crv_A XPD/RAD3 related DNA he 95.8 0.036 1.2E-06 49.2 8.9 77 104-186 391-474 (551)
108 4ddu_A Reverse gyrase; topoiso 95.8 0.02 6.7E-07 55.2 7.4 75 104-179 119-201 (1104)
109 3e1s_A Exodeoxyribonuclease V, 95.3 0.022 7.4E-07 51.0 5.6 50 6-63 202-251 (574)
110 3u4q_A ATP-dependent helicase/ 95.1 0.031 1.1E-06 54.4 6.6 59 7-67 22-80 (1232)
111 2eyq_A TRCF, transcription-rep 94.8 0.081 2.8E-06 51.2 8.5 76 104-179 650-730 (1151)
112 1uaa_A REP helicase, protein ( 94.8 0.037 1.3E-06 50.3 5.9 56 8-67 15-70 (673)
113 3upu_A ATP-dependent DNA helic 94.6 0.047 1.6E-06 47.3 5.7 48 10-64 47-94 (459)
114 1t6n_A Probable ATP-dependent 94.5 0.21 7.1E-06 38.2 8.8 71 106-179 82-163 (220)
115 3vkw_A Replicase large subunit 94.5 0.034 1.2E-06 48.0 4.4 45 9-66 162-206 (446)
116 1pjr_A PCRA; DNA repair, DNA r 94.4 0.071 2.4E-06 49.0 6.7 56 8-67 24-79 (724)
117 3fe2_A Probable ATP-dependent 94.3 0.2 6.9E-06 39.1 8.3 72 104-179 100-181 (242)
118 1oyw_A RECQ helicase, ATP-depe 94.2 0.14 4.8E-06 45.1 7.9 59 106-164 65-123 (523)
119 3ber_A Probable ATP-dependent 94.0 0.31 1E-05 38.3 8.9 74 102-179 107-191 (249)
120 2db3_A ATP-dependent RNA helic 94.0 0.24 8.2E-06 42.4 8.8 124 105-232 128-317 (434)
121 2v1x_A ATP-dependent DNA helic 93.8 0.15 5E-06 45.7 7.3 60 105-164 83-144 (591)
122 1e9r_A Conjugal transfer prote 93.7 0.053 1.8E-06 46.5 4.2 48 3-58 48-95 (437)
123 3hjh_A Transcription-repair-co 93.5 0.15 5.1E-06 44.5 6.6 53 7-70 13-65 (483)
124 2oxc_A Probable ATP-dependent 93.3 0.26 8.9E-06 38.1 7.3 72 103-179 89-171 (230)
125 3iuy_A Probable ATP-dependent 93.1 0.28 9.6E-06 37.7 7.1 72 104-179 92-172 (228)
126 2gxq_A Heat resistant RNA depe 92.6 0.46 1.6E-05 35.7 7.7 72 104-179 70-149 (207)
127 1xti_A Probable ATP-dependent 92.4 0.63 2.2E-05 38.5 8.8 72 105-179 75-157 (391)
128 2pl3_A Probable ATP-dependent 92.4 0.26 8.9E-06 38.1 6.0 71 104-179 95-176 (236)
129 3ec2_A DNA replication protein 92.0 0.1 3.5E-06 38.7 3.1 51 6-64 36-86 (180)
130 1vec_A ATP-dependent RNA helic 91.9 0.74 2.5E-05 34.5 8.0 72 104-179 69-151 (206)
131 2dr3_A UPF0273 protein PH0284; 91.6 0.15 5.1E-06 39.6 3.8 53 6-67 21-73 (247)
132 2l82_A Designed protein OR32; 91.2 1.5 5.1E-05 29.8 7.8 50 109-158 5-54 (162)
133 3bor_A Human initiation factor 91.1 0.48 1.6E-05 36.7 6.4 72 105-179 97-178 (237)
134 3ly5_A ATP-dependent RNA helic 91.0 1.2 4.1E-05 35.2 8.6 71 105-179 125-206 (262)
135 1t5i_A C_terminal domain of A 90.8 3.3 0.00011 30.2 10.5 37 44-82 31-67 (172)
136 1wrb_A DJVLGB; RNA helicase, D 90.7 0.92 3.1E-05 35.4 7.6 71 105-179 99-179 (253)
137 3bh0_A DNAB-like replicative h 90.5 0.52 1.8E-05 38.5 6.2 54 5-67 65-118 (315)
138 2orw_A Thymidine kinase; TMTK, 90.5 0.25 8.5E-06 37.1 4.0 38 8-53 3-40 (184)
139 3n70_A Transport activator; si 90.4 0.13 4.5E-06 36.9 2.2 19 6-24 22-40 (145)
140 3te6_A Regulatory protein SIR3 89.8 0.26 8.8E-06 40.6 3.8 28 7-35 44-71 (318)
141 2b8t_A Thymidine kinase; deoxy 89.7 0.24 8.2E-06 38.6 3.3 40 7-54 11-50 (223)
142 2zts_A Putative uncharacterize 89.7 0.13 4.5E-06 39.9 1.9 53 6-67 28-81 (251)
143 1qde_A EIF4A, translation init 89.7 0.55 1.9E-05 35.8 5.4 71 104-179 80-160 (224)
144 1jbk_A CLPB protein; beta barr 89.4 0.41 1.4E-05 35.0 4.4 27 8-35 43-69 (195)
145 3co5_A Putative two-component 89.4 0.14 4.9E-06 36.6 1.7 18 7-24 26-43 (143)
146 2w58_A DNAI, primosome compone 89.3 0.38 1.3E-05 36.2 4.2 25 9-34 55-79 (202)
147 1gku_B Reverse gyrase, TOP-RG; 89.2 0.97 3.3E-05 43.3 7.7 70 105-179 98-180 (1054)
148 3cpe_A Terminase, DNA packagin 89.2 0.85 2.9E-05 40.7 7.0 54 8-67 178-231 (592)
149 2p65_A Hypothetical protein PF 89.1 0.51 1.8E-05 34.4 4.8 27 8-35 43-69 (187)
150 2qgz_A Helicase loader, putati 88.8 0.36 1.2E-05 39.4 4.0 26 8-34 152-177 (308)
151 4a2p_A RIG-I, retinoic acid in 88.6 1 3.4E-05 39.3 7.0 70 106-179 55-135 (556)
152 1xx6_A Thymidine kinase; NESG, 88.4 0.46 1.6E-05 36.0 4.0 39 7-53 7-45 (191)
153 2i4i_A ATP-dependent RNA helic 88.1 1.9 6.5E-05 36.0 8.2 70 106-179 101-180 (417)
154 1tue_A Replication protein E1; 88.1 0.26 8.9E-06 38.0 2.4 26 7-33 57-82 (212)
155 2o0j_A Terminase, DNA packagin 87.9 1.3 4.3E-05 37.5 6.9 53 9-67 179-231 (385)
156 4a2q_A RIG-I, retinoic acid in 87.9 1.4 4.8E-05 40.8 7.7 70 106-179 296-376 (797)
157 1wp9_A ATP-dependent RNA helic 87.8 1.4 5E-05 37.1 7.4 101 4-179 20-130 (494)
158 3bgw_A DNAB-like replicative h 87.6 0.55 1.9E-05 40.4 4.5 54 5-67 194-247 (444)
159 1q0u_A Bstdead; DEAD protein, 87.4 0.59 2E-05 35.6 4.2 71 105-179 71-155 (219)
160 3ice_A Transcription terminati 87.3 0.77 2.6E-05 39.0 5.1 102 4-117 170-271 (422)
161 3bos_A Putative DNA replicatio 87.0 0.61 2.1E-05 35.6 4.1 27 7-34 51-77 (242)
162 3syl_A Protein CBBX; photosynt 86.5 0.52 1.8E-05 37.9 3.6 28 6-34 65-92 (309)
163 1fuu_A Yeast initiation factor 86.5 3.1 0.00011 34.2 8.5 71 104-179 87-167 (394)
164 3t15_A Ribulose bisphosphate c 86.2 0.58 2E-05 37.8 3.7 30 3-33 31-60 (293)
165 3iij_A Coilin-interacting nucl 86.1 0.39 1.3E-05 35.4 2.5 22 3-24 6-27 (180)
166 2w0m_A SSO2452; RECA, SSPF, un 86.0 0.54 1.8E-05 35.9 3.3 54 5-67 20-73 (235)
167 1hv8_A Putative ATP-dependent 85.7 4.9 0.00017 32.5 9.3 72 103-179 71-152 (367)
168 2kjq_A DNAA-related protein; s 85.7 1 3.5E-05 32.4 4.5 18 7-24 35-52 (149)
169 4a1f_A DNAB helicase, replicat 85.4 0.8 2.8E-05 38.0 4.2 53 5-66 43-95 (338)
170 1xp8_A RECA protein, recombina 85.4 0.62 2.1E-05 39.1 3.6 41 5-53 71-111 (366)
171 1u94_A RECA protein, recombina 85.2 0.64 2.2E-05 38.8 3.6 40 5-52 60-99 (356)
172 2j0s_A ATP-dependent RNA helic 85.1 4.2 0.00014 33.8 8.7 72 104-179 103-184 (410)
173 2q6t_A DNAB replication FORK h 84.9 0.84 2.9E-05 39.2 4.3 53 5-65 197-249 (444)
174 4ag6_A VIRB4 ATPase, type IV s 84.9 0.8 2.7E-05 38.5 4.1 42 7-56 34-75 (392)
175 3hr8_A Protein RECA; alpha and 84.8 0.53 1.8E-05 39.4 2.9 41 5-53 58-98 (356)
176 2p6n_A ATP-dependent RNA helic 84.8 9.7 0.00033 28.3 9.8 37 44-82 54-90 (191)
177 3u4q_B ATP-dependent helicase/ 84.8 0.73 2.5E-05 44.6 4.2 49 12-66 5-53 (1166)
178 3tbk_A RIG-I helicase domain; 84.7 1.2 4E-05 38.8 5.2 70 106-179 52-132 (555)
179 3foj_A Uncharacterized protein 84.3 1.2 4E-05 29.5 3.9 38 104-141 54-91 (100)
180 2zr9_A Protein RECA, recombina 84.2 0.75 2.6E-05 38.3 3.6 40 5-52 58-97 (349)
181 2oap_1 GSPE-2, type II secreti 84.0 0.79 2.7E-05 40.3 3.8 18 7-24 259-276 (511)
182 1s2m_A Putative ATP-dependent 83.9 4 0.00014 33.8 8.0 71 105-179 88-168 (400)
183 3eme_A Rhodanese-like domain p 83.8 1.1 3.9E-05 29.7 3.8 38 104-141 54-91 (103)
184 1l8q_A Chromosomal replication 83.8 1.1 3.7E-05 36.5 4.3 27 7-34 36-62 (324)
185 3gk5_A Uncharacterized rhodane 83.7 1.1 3.8E-05 30.2 3.7 38 104-141 53-90 (108)
186 3fmo_B ATP-dependent RNA helic 83.7 0.86 3E-05 36.9 3.7 69 104-179 160-240 (300)
187 1cr0_A DNA primase/helicase; R 83.7 1.1 3.8E-05 35.9 4.3 40 5-51 32-71 (296)
188 3iwh_A Rhodanese-like domain p 83.5 1.2 4.1E-05 29.9 3.8 37 104-140 54-90 (103)
189 3dkp_A Probable ATP-dependent 83.4 1.7 5.7E-05 33.6 5.1 72 105-179 97-180 (245)
190 1kgd_A CASK, peripheral plasma 83.3 0.5 1.7E-05 35.0 2.0 19 6-24 3-21 (180)
191 2z0m_A 337AA long hypothetical 83.3 4.3 0.00015 32.5 7.8 69 106-179 56-134 (337)
192 3h4m_A Proteasome-activating n 83.2 0.8 2.7E-05 36.4 3.2 26 6-32 49-74 (285)
193 2r6a_A DNAB helicase, replicat 82.9 0.83 2.9E-05 39.3 3.4 52 5-64 200-251 (454)
194 3uk6_A RUVB-like 2; hexameric 82.9 0.7 2.4E-05 38.2 2.9 25 8-33 70-94 (368)
195 1w36_B RECB, exodeoxyribonucle 82.8 2.6 8.8E-05 40.9 7.1 60 7-67 16-79 (1180)
196 1fx0_A ATP synthase alpha chai 82.8 11 0.00037 33.0 10.3 23 2-24 157-179 (507)
197 3cf0_A Transitional endoplasmi 82.5 0.88 3E-05 36.8 3.2 25 6-31 47-71 (301)
198 3io5_A Recombination and repai 82.3 0.89 3.1E-05 37.5 3.2 45 5-56 26-70 (333)
199 2r8r_A Sensor protein; KDPD, P 82.0 1.2 4.2E-05 34.7 3.7 28 7-35 4-32 (228)
200 2bjv_A PSP operon transcriptio 81.9 0.64 2.2E-05 36.6 2.2 18 7-24 28-45 (265)
201 3eiq_A Eukaryotic initiation f 81.7 5 0.00017 33.3 7.8 72 105-179 107-188 (414)
202 3a8t_A Adenylate isopentenyltr 81.5 0.66 2.2E-05 38.5 2.1 25 9-34 41-65 (339)
203 2r9v_A ATP synthase subunit al 81.3 10 0.00034 33.2 9.5 21 4-24 171-191 (515)
204 1ofh_A ATP-dependent HSL prote 81.2 1 3.4E-05 36.1 3.1 25 8-33 50-74 (310)
205 1qhx_A CPT, protein (chloramph 81.2 0.67 2.3E-05 33.9 1.9 17 8-24 3-19 (178)
206 2eyu_A Twitching motility prot 81.2 0.58 2E-05 37.2 1.6 19 6-24 23-41 (261)
207 4b4t_K 26S protease regulatory 81.1 5.8 0.0002 33.9 8.0 25 8-33 206-230 (428)
208 2ze6_A Isopentenyl transferase 81.1 0.85 2.9E-05 35.9 2.6 21 11-32 4-24 (253)
209 1nlf_A Regulatory protein REPA 81.0 0.87 3E-05 36.3 2.7 29 4-33 26-54 (279)
210 2qz4_A Paraplegin; AAA+, SPG7, 81.0 0.68 2.3E-05 36.2 2.0 26 7-33 38-63 (262)
211 2z43_A DNA repair and recombin 80.9 2 6.8E-05 35.1 4.8 61 5-67 104-165 (324)
212 2qe7_A ATP synthase subunit al 80.7 13 0.00044 32.4 10.0 22 3-24 157-178 (502)
213 2qmh_A HPR kinase/phosphorylas 80.7 0.84 2.9E-05 34.9 2.3 24 7-31 33-56 (205)
214 2chg_A Replication factor C sm 80.7 1.1 3.9E-05 33.4 3.1 23 10-33 40-62 (226)
215 1zp6_A Hypothetical protein AT 80.6 0.64 2.2E-05 34.5 1.6 20 5-24 6-25 (191)
216 3ney_A 55 kDa erythrocyte memb 80.6 0.77 2.6E-05 35.0 2.1 19 6-24 17-35 (197)
217 3b9p_A CG5977-PA, isoform A; A 80.5 0.66 2.3E-05 37.2 1.8 23 8-31 54-76 (297)
218 2j9r_A Thymidine kinase; TK1, 80.3 2.3 7.8E-05 32.8 4.7 40 8-55 28-67 (214)
219 3exa_A TRNA delta(2)-isopenten 80.2 0.87 3E-05 37.4 2.4 24 9-33 4-27 (322)
220 2ck3_A ATP synthase subunit al 80.1 23 0.0008 30.9 11.4 30 4-33 158-187 (510)
221 1wv9_A Rhodanese homolog TT165 80.0 1.8 6E-05 28.2 3.5 35 107-141 54-88 (94)
222 1lvg_A Guanylate kinase, GMP k 79.7 0.74 2.5E-05 34.8 1.7 18 7-24 3-20 (198)
223 3foz_A TRNA delta(2)-isopenten 79.7 0.95 3.3E-05 37.1 2.5 23 10-33 12-34 (316)
224 3d3q_A TRNA delta(2)-isopenten 79.7 0.97 3.3E-05 37.5 2.6 23 10-33 9-31 (340)
225 2qby_B CDC6 homolog 3, cell di 79.7 1.9 6.7E-05 35.5 4.5 25 8-33 45-69 (384)
226 3hws_A ATP-dependent CLP prote 79.6 0.8 2.7E-05 38.0 2.1 25 7-32 50-74 (363)
227 2z4s_A Chromosomal replication 79.6 1.7 5.8E-05 37.3 4.2 49 8-63 130-178 (440)
228 1y63_A LMAJ004144AAA protein; 79.6 0.92 3.2E-05 33.6 2.2 18 7-24 9-26 (184)
229 3vaa_A Shikimate kinase, SK; s 79.5 0.76 2.6E-05 34.5 1.8 25 7-32 24-48 (199)
230 2j41_A Guanylate kinase; GMP, 79.4 0.81 2.8E-05 34.3 1.9 19 6-24 4-22 (207)
231 1d2n_A N-ethylmaleimide-sensit 79.3 0.7 2.4E-05 36.6 1.6 25 7-32 63-87 (272)
232 3oaa_A ATP synthase subunit al 79.3 19 0.00064 31.5 10.5 21 4-24 158-178 (513)
233 2v1u_A Cell division control p 79.3 1.1 3.8E-05 36.9 2.9 26 7-33 43-68 (387)
234 2ykg_A Probable ATP-dependent 79.3 2.5 8.4E-05 38.2 5.3 109 2-179 22-141 (696)
235 3eie_A Vacuolar protein sortin 79.0 1.2 4.1E-05 36.3 2.9 25 8-33 51-75 (322)
236 3trf_A Shikimate kinase, SK; a 78.9 0.8 2.8E-05 33.7 1.7 17 8-24 5-21 (185)
237 1q57_A DNA primase/helicase; d 78.8 1.3 4.4E-05 38.6 3.2 54 5-66 239-292 (503)
238 3tau_A Guanylate kinase, GMP k 78.7 0.83 2.9E-05 34.7 1.8 18 7-24 7-24 (208)
239 1xwi_A SKD1 protein; VPS4B, AA 78.6 1.2 4.2E-05 36.4 2.9 25 8-33 45-69 (322)
240 4b4t_M 26S protease regulatory 78.6 1.4 4.6E-05 37.9 3.2 25 8-33 215-239 (434)
241 2fsf_A Preprotein translocase 78.6 4.8 0.00016 37.5 7.0 55 104-164 113-171 (853)
242 1xjc_A MOBB protein homolog; s 78.6 1.9 6.6E-05 31.8 3.7 23 11-34 7-29 (169)
243 1nij_A Hypothetical protein YJ 78.6 1.9 6.7E-05 35.1 4.1 14 11-24 7-20 (318)
244 1tf5_A Preprotein translocase 78.4 5.2 0.00018 37.2 7.1 86 1-164 91-180 (844)
245 2ius_A DNA translocase FTSK; n 78.2 2.4 8.2E-05 37.2 4.7 27 7-34 166-192 (512)
246 1ojl_A Transcriptional regulat 78.1 1 3.5E-05 36.6 2.2 18 7-24 24-41 (304)
247 2qor_A Guanylate kinase; phosp 78.1 1 3.5E-05 34.0 2.1 19 6-24 10-28 (204)
248 3jvv_A Twitching mobility prot 78.1 1.2 4.1E-05 37.2 2.7 26 8-34 123-148 (356)
249 1p9r_A General secretion pathw 78.0 1.8 6.3E-05 36.9 3.9 25 8-33 167-191 (418)
250 2c9o_A RUVB-like 1; hexameric 77.9 1.3 4.3E-05 38.2 2.9 26 7-33 62-87 (456)
251 3lw7_A Adenylate kinase relate 77.9 0.82 2.8E-05 33.0 1.5 14 11-24 4-17 (179)
252 4b4t_J 26S protease regulatory 77.9 1.6 5.4E-05 37.1 3.4 25 8-33 182-206 (405)
253 2rb4_A ATP-dependent RNA helic 77.8 5.9 0.0002 28.8 6.3 38 43-82 33-70 (175)
254 2qt1_A Nicotinamide riboside k 77.8 1.1 3.6E-05 33.9 2.1 22 3-24 16-37 (207)
255 1ixz_A ATP-dependent metallopr 77.7 0.9 3.1E-05 35.5 1.8 14 11-24 52-65 (254)
256 2ewv_A Twitching motility prot 77.7 1.4 4.7E-05 37.0 3.0 27 6-33 134-160 (372)
257 1c9k_A COBU, adenosylcobinamid 77.7 1.4 4.9E-05 32.9 2.8 45 11-67 2-46 (180)
258 1kht_A Adenylate kinase; phosp 77.6 0.9 3.1E-05 33.5 1.7 18 7-24 2-19 (192)
259 1hqc_A RUVB; extended AAA-ATPa 77.5 1 3.6E-05 36.3 2.1 24 8-32 38-61 (324)
260 3b6e_A Interferon-induced heli 77.1 1.6 5.5E-05 32.7 3.0 72 104-179 80-167 (216)
261 1lv7_A FTSH; alpha/beta domain 77.0 0.94 3.2E-05 35.5 1.7 17 8-24 45-61 (257)
262 2gza_A Type IV secretion syste 77.0 1 3.5E-05 37.6 2.0 18 7-24 174-191 (361)
263 2qp9_X Vacuolar protein sortin 76.8 1.5 5.3E-05 36.3 3.0 25 8-33 84-108 (355)
264 2x8a_A Nuclear valosin-contain 76.5 1 3.5E-05 35.9 1.8 14 11-24 47-60 (274)
265 3sxu_A DNA polymerase III subu 76.2 8 0.00027 27.9 6.4 86 104-202 37-124 (150)
266 3pxg_A Negative regulator of g 76.2 2.5 8.6E-05 36.5 4.3 28 7-35 200-227 (468)
267 1um8_A ATP-dependent CLP prote 76.0 1.8 6E-05 36.1 3.2 25 7-32 71-95 (376)
268 3kb2_A SPBC2 prophage-derived 75.9 1 3.6E-05 32.5 1.6 15 10-24 3-17 (173)
269 1kag_A SKI, shikimate kinase I 75.9 1.1 3.9E-05 32.4 1.8 17 8-24 4-20 (173)
270 2hjv_A ATP-dependent RNA helic 75.8 5 0.00017 28.8 5.3 37 44-82 35-71 (163)
271 1z6g_A Guanylate kinase; struc 75.7 1.2 4.2E-05 34.1 2.0 19 6-24 21-39 (218)
272 1s96_A Guanylate kinase, GMP k 75.7 1.2 3.9E-05 34.4 1.8 20 5-24 13-32 (219)
273 3pfi_A Holliday junction ATP-d 75.7 1.2 4E-05 36.4 1.9 23 9-32 56-78 (338)
274 2r62_A Cell division protease 75.6 0.81 2.8E-05 36.0 0.9 25 8-33 44-68 (268)
275 2jtq_A Phage shock protein E; 75.6 4.4 0.00015 25.6 4.5 37 104-141 39-76 (85)
276 2wwf_A Thymidilate kinase, put 75.5 1.6 5.4E-05 32.8 2.5 20 5-24 7-26 (212)
277 1ex7_A Guanylate kinase; subst 75.5 1.1 3.9E-05 33.6 1.7 16 9-24 2-17 (186)
278 3eph_A TRNA isopentenyltransfe 75.5 1.6 5.4E-05 37.2 2.7 22 11-33 5-26 (409)
279 2px0_A Flagellar biosynthesis 75.5 3 0.0001 33.7 4.3 19 7-25 104-122 (296)
280 3nhv_A BH2092 protein; alpha-b 75.5 3.3 0.00011 29.4 4.2 38 104-141 70-109 (144)
281 1nkt_A Preprotein translocase 75.4 8.1 0.00028 36.2 7.5 56 103-164 149-208 (922)
282 1g8p_A Magnesium-chelatase 38 75.3 0.94 3.2E-05 37.0 1.3 24 8-32 45-68 (350)
283 4b4t_L 26S protease subunit RP 75.2 1.9 6.5E-05 37.0 3.2 25 8-33 215-239 (437)
284 3dm5_A SRP54, signal recogniti 75.1 5.1 0.00017 34.4 5.8 36 8-51 100-135 (443)
285 2k0z_A Uncharacterized protein 75.1 4.4 0.00015 27.2 4.5 38 104-141 54-91 (110)
286 1znw_A Guanylate kinase, GMP k 75.1 1.3 4.3E-05 33.6 1.9 20 5-24 17-36 (207)
287 4gl2_A Interferon-induced heli 75.0 1.2 3.9E-05 40.4 1.9 110 2-179 16-141 (699)
288 4gp7_A Metallophosphoesterase; 75.0 0.93 3.2E-05 33.3 1.1 20 7-26 8-27 (171)
289 3d8b_A Fidgetin-like protein 1 74.9 1.8 6.2E-05 35.8 3.0 23 8-31 117-139 (357)
290 1f9v_A Kinesin-like protein KA 74.8 0.82 2.8E-05 38.1 0.8 21 4-24 79-101 (347)
291 3tr0_A Guanylate kinase, GMP k 74.6 1.3 4.3E-05 33.2 1.8 18 7-24 6-23 (205)
292 2iut_A DNA translocase FTSK; n 74.5 3.2 0.00011 36.9 4.5 27 8-35 214-240 (574)
293 1ly1_A Polynucleotide kinase; 74.4 1.2 4E-05 32.5 1.5 15 10-24 4-18 (181)
294 1gvn_B Zeta; postsegregational 74.4 1.5 5.3E-05 35.2 2.3 18 7-24 32-49 (287)
295 3hix_A ALR3790 protein; rhodan 74.3 2.7 9.3E-05 28.0 3.3 38 104-141 50-88 (106)
296 3crm_A TRNA delta(2)-isopenten 74.3 1.7 5.7E-05 35.8 2.5 24 9-33 6-29 (323)
297 2c61_A A-type ATP synthase non 74.2 11 0.00036 32.7 7.6 22 3-24 147-168 (469)
298 3nbx_X ATPase RAVA; AAA+ ATPas 74.1 0.8 2.7E-05 40.1 0.6 19 6-24 39-57 (500)
299 1iy2_A ATP-dependent metallopr 74.0 1.3 4.4E-05 35.2 1.8 14 11-24 76-89 (278)
300 4eun_A Thermoresistant glucoki 74.0 1.4 4.7E-05 33.1 1.8 18 7-24 28-45 (200)
301 4a2w_A RIG-I, retinoic acid in 74.0 2.9 9.9E-05 39.5 4.4 109 2-179 257-376 (936)
302 3a00_A Guanylate kinase, GMP k 73.9 1.5 5E-05 32.6 1.9 15 10-24 3-17 (186)
303 3g5j_A Putative ATP/GTP bindin 73.5 3 0.0001 28.7 3.5 37 105-141 87-125 (134)
304 1knq_A Gluconate kinase; ALFA/ 73.5 1.3 4.5E-05 32.2 1.6 18 7-24 7-24 (175)
305 1fuk_A Eukaryotic initiation f 73.5 7.8 0.00027 27.8 5.9 37 44-82 30-66 (165)
306 2pt7_A CAG-ALFA; ATPase, prote 73.5 1.6 5.3E-05 36.0 2.2 18 7-24 170-187 (330)
307 3kl4_A SRP54, signal recogniti 73.4 6.7 0.00023 33.6 6.2 36 8-51 97-132 (433)
308 2ipc_A Preprotein translocase 73.4 5.9 0.0002 37.3 6.1 56 103-164 117-176 (997)
309 1njg_A DNA polymerase III subu 73.3 2.2 7.5E-05 32.2 2.9 24 10-34 47-70 (250)
310 2cvh_A DNA repair and recombin 73.3 1.8 6.1E-05 32.6 2.4 20 5-24 17-36 (220)
311 3t0q_A AGR253WP; kinesin, alph 73.0 1.4 4.7E-05 36.7 1.7 20 5-24 81-102 (349)
312 2r44_A Uncharacterized protein 72.9 0.88 3E-05 37.1 0.5 18 7-24 45-62 (331)
313 1rj9_A FTSY, signal recognitio 72.9 4.9 0.00017 32.6 5.0 27 7-35 101-127 (304)
314 3flh_A Uncharacterized protein 72.9 2.2 7.5E-05 29.4 2.6 38 104-141 69-108 (124)
315 3l9o_A ATP-dependent RNA helic 72.7 3.3 0.00011 39.9 4.5 65 104-179 225-295 (1108)
316 3h11_B Caspase-8; cell death, 72.6 10 0.00036 30.1 6.8 51 103-154 14-85 (271)
317 3cm0_A Adenylate kinase; ATP-b 72.3 1.2 3.9E-05 32.8 1.0 18 7-24 3-20 (186)
318 3lre_A Kinesin-like protein KI 72.3 1.4 4.7E-05 36.8 1.6 20 5-24 101-122 (355)
319 4b4t_I 26S protease regulatory 72.2 2.6 8.8E-05 36.2 3.3 25 8-33 216-240 (437)
320 1goj_A Kinesin, kinesin heavy 72.0 1.7 5.7E-05 36.3 2.0 20 5-24 76-97 (355)
321 4fcw_A Chaperone protein CLPB; 71.9 1.4 4.9E-05 35.2 1.6 23 10-33 49-71 (311)
322 2fsx_A RV0390, COG0607: rhodan 71.9 4.1 0.00014 29.0 3.9 38 104-141 78-116 (148)
323 3vfd_A Spastin; ATPase, microt 71.8 1.5 5.1E-05 36.8 1.7 23 8-31 148-170 (389)
324 1sxj_D Activator 1 41 kDa subu 71.8 2.8 9.6E-05 34.1 3.4 24 9-33 59-82 (353)
325 4b4t_H 26S protease regulatory 71.6 2.4 8.2E-05 36.7 2.9 25 8-33 243-267 (467)
326 2qby_A CDC6 homolog 1, cell di 71.6 2.6 8.7E-05 34.6 3.1 26 8-34 45-70 (386)
327 1fnn_A CDC6P, cell division co 71.3 2.5 8.7E-05 34.8 3.0 23 10-33 46-68 (389)
328 4fn4_A Short chain dehydrogena 71.0 21 0.00072 28.0 8.2 58 105-164 30-92 (254)
329 1v5w_A DMC1, meiotic recombina 70.9 4.5 0.00015 33.3 4.4 61 5-67 119-180 (343)
330 3bfn_A Kinesin-like protein KI 70.9 1.5 5.2E-05 37.0 1.5 20 5-24 94-115 (388)
331 2rep_A Kinesin-like protein KI 70.6 1.7 5.8E-05 36.6 1.8 20 5-24 111-132 (376)
332 2rhm_A Putative kinase; P-loop 70.6 1.6 5.3E-05 32.2 1.4 18 7-24 4-21 (193)
333 2i1q_A DNA repair and recombin 70.5 6.4 0.00022 31.8 5.3 62 5-67 95-166 (322)
334 2ehv_A Hypothetical protein PH 70.4 1.8 6E-05 33.4 1.7 21 5-25 27-47 (251)
335 2ck3_D ATP synthase subunit be 70.4 19 0.00065 31.2 8.3 29 4-33 149-177 (482)
336 1np6_A Molybdopterin-guanine d 70.4 5.3 0.00018 29.5 4.3 22 11-33 9-30 (174)
337 1tq1_A AT5G66040, senescence-a 70.3 3.5 0.00012 28.6 3.2 38 104-141 80-118 (129)
338 3hu3_A Transitional endoplasmi 70.3 1.9 6.4E-05 37.6 2.0 18 7-24 237-254 (489)
339 2p5t_B PEZT; postsegregational 70.1 1.7 5.9E-05 34.0 1.6 20 5-24 29-48 (253)
340 3pxi_A Negative regulator of g 70.0 5.1 0.00017 36.8 5.0 27 7-34 200-226 (758)
341 3e2i_A Thymidine kinase; Zn-bi 70.0 3.5 0.00012 31.8 3.3 39 8-54 28-66 (219)
342 2zan_A Vacuolar protein sortin 69.9 2.5 8.5E-05 36.2 2.7 25 8-33 167-191 (444)
343 1qxn_A SUD, sulfide dehydrogen 69.9 3.4 0.00012 29.1 3.0 38 104-141 80-118 (137)
344 2vhj_A Ntpase P4, P4; non- hyd 69.8 1.9 6.4E-05 35.6 1.8 25 6-31 121-145 (331)
345 1tev_A UMP-CMP kinase; ploop, 69.8 1.6 5.4E-05 32.1 1.3 17 8-24 3-19 (196)
346 3cmu_A Protein RECA, recombina 69.7 3.7 0.00013 42.0 4.2 41 5-53 1424-1464(2050)
347 3uie_A Adenylyl-sulfate kinase 69.6 1.7 5.8E-05 32.6 1.4 18 7-24 24-41 (200)
348 1sky_E F1-ATPase, F1-ATP synth 69.5 22 0.00075 30.8 8.5 21 4-24 147-167 (473)
349 3lnc_A Guanylate kinase, GMP k 69.1 1.5 5.2E-05 33.6 1.1 18 7-24 26-43 (231)
350 1gmx_A GLPE protein; transfera 69.0 3.2 0.00011 27.6 2.7 38 104-141 56-94 (108)
351 2v54_A DTMP kinase, thymidylat 68.8 2.1 7.1E-05 31.9 1.8 18 7-24 3-20 (204)
352 3d1p_A Putative thiosulfate su 68.7 4.4 0.00015 28.3 3.5 38 104-141 89-127 (139)
353 1qvr_A CLPB protein; coiled co 68.6 5.9 0.0002 36.9 5.1 26 8-34 191-216 (854)
354 1n0w_A DNA repair protein RAD5 68.5 2.1 7.1E-05 32.8 1.8 26 5-31 21-46 (243)
355 3c8u_A Fructokinase; YP_612366 68.4 2.1 7.3E-05 32.3 1.8 18 7-24 21-38 (208)
356 3i5x_A ATP-dependent RNA helic 68.4 15 0.00053 31.9 7.6 56 106-164 146-209 (563)
357 1sxj_A Activator 1 95 kDa subu 68.2 2.9 0.0001 36.5 2.9 25 8-33 77-101 (516)
358 3sqw_A ATP-dependent RNA helic 68.2 16 0.00053 32.2 7.6 56 106-164 95-158 (579)
359 2r2a_A Uncharacterized protein 68.2 3 0.0001 31.6 2.6 14 11-24 8-21 (199)
360 3u61_B DNA polymerase accessor 68.2 5.2 0.00018 32.2 4.2 22 11-33 51-72 (324)
361 2h54_A Caspase-1; allosteric s 68.1 24 0.00082 26.1 7.5 48 106-154 43-101 (178)
362 1w4r_A Thymidine kinase; type 68.1 4.1 0.00014 30.9 3.3 39 7-53 19-57 (195)
363 2l82_A Designed protein OR32; 68.1 25 0.00085 23.8 11.7 107 48-156 6-129 (162)
364 3t61_A Gluconokinase; PSI-biol 68.0 2 6.7E-05 32.2 1.5 16 9-24 19-34 (202)
365 1bg2_A Kinesin; motor protein, 68.0 1.9 6.5E-05 35.5 1.5 19 6-24 74-94 (325)
366 3vr4_D V-type sodium ATPase su 68.0 51 0.0017 28.4 10.4 22 3-24 146-167 (465)
367 2hhg_A Hypothetical protein RP 68.0 3.9 0.00013 28.6 3.0 38 104-141 84-122 (139)
368 1zak_A Adenylate kinase; ATP:A 67.9 2.4 8.4E-05 32.2 2.1 18 7-24 4-21 (222)
369 3nwn_A Kinesin-like protein KI 67.8 1.9 6.5E-05 36.0 1.5 20 5-24 100-121 (359)
370 2bdt_A BH3686; alpha-beta prot 67.8 1.6 5.6E-05 32.2 1.0 16 9-24 3-18 (189)
371 2plr_A DTMP kinase, probable t 67.7 2 6.9E-05 32.1 1.5 26 7-33 3-28 (213)
372 3dc4_A Kinesin-like protein NO 67.7 2 6.7E-05 35.7 1.5 19 6-24 91-111 (344)
373 2c95_A Adenylate kinase 1; tra 67.6 2.3 7.8E-05 31.4 1.8 18 7-24 8-25 (196)
374 1ry6_A Internal kinesin; kines 67.3 2 6.8E-05 35.9 1.5 18 7-24 82-101 (360)
375 3bs4_A Uncharacterized protein 67.2 6.9 0.00023 31.0 4.6 54 5-67 18-71 (260)
376 1nks_A Adenylate kinase; therm 67.2 2 7E-05 31.5 1.4 23 10-33 3-25 (194)
377 1in4_A RUVB, holliday junction 67.1 2.2 7.6E-05 34.9 1.8 16 9-24 52-67 (334)
378 2h58_A Kinesin-like protein KI 67.1 2 7E-05 35.4 1.5 19 6-24 77-97 (330)
379 1g5t_A COB(I)alamin adenosyltr 67.0 4.7 0.00016 30.5 3.4 34 10-51 30-63 (196)
380 3fb4_A Adenylate kinase; psych 67.0 2.1 7.3E-05 32.3 1.5 14 11-24 3-16 (216)
381 3eaq_A Heat resistant RNA depe 66.7 11 0.00037 28.5 5.6 38 44-83 31-68 (212)
382 1aky_A Adenylate kinase; ATP:A 66.7 2.4 8.2E-05 32.2 1.8 17 8-24 4-20 (220)
383 2y65_A Kinesin, kinesin heavy 66.3 2.2 7.4E-05 35.8 1.5 19 6-24 81-101 (365)
384 2vvg_A Kinesin-2; motor protei 66.3 2.2 7.4E-05 35.5 1.5 19 6-24 86-106 (350)
385 3kta_A Chromosome segregation 66.3 2.3 7.8E-05 31.1 1.5 15 10-24 28-42 (182)
386 3cob_A Kinesin heavy chain-lik 66.1 2.1 7.4E-05 35.8 1.5 19 6-24 76-96 (369)
387 3dmn_A Putative DNA helicase; 66.0 29 0.00099 25.2 7.7 65 106-185 61-125 (174)
388 2v9p_A Replication protein E1; 66.0 3.2 0.00011 33.8 2.5 28 5-34 123-150 (305)
389 2vli_A Antibiotic resistance p 66.0 2.2 7.6E-05 31.1 1.4 18 7-24 4-21 (183)
390 1v8k_A Kinesin-like protein KI 65.9 2.2 7.5E-05 36.3 1.5 19 6-24 151-171 (410)
391 3b6u_A Kinesin-like protein KI 65.9 2.2 7.5E-05 35.8 1.5 19 6-24 98-118 (372)
392 1x88_A Kinesin-like protein KI 65.8 2.2 7.5E-05 35.6 1.5 19 6-24 85-105 (359)
393 3tif_A Uncharacterized ABC tra 65.7 2.5 8.5E-05 32.9 1.7 27 6-34 29-55 (235)
394 1ye8_A Protein THEP1, hypothet 65.6 2.4 8.2E-05 31.4 1.5 14 11-24 3-16 (178)
395 3dl0_A Adenylate kinase; phosp 65.6 2.3 8E-05 32.1 1.5 14 11-24 3-16 (216)
396 1zd8_A GTP:AMP phosphotransfer 65.5 2.5 8.4E-05 32.3 1.7 18 7-24 6-23 (227)
397 2pez_A Bifunctional 3'-phospho 65.5 2.3 7.9E-05 31.1 1.4 18 7-24 4-21 (179)
398 1vee_A Proline-rich protein fa 65.5 4.6 0.00016 28.1 3.0 38 104-141 72-110 (134)
399 1f2t_A RAD50 ABC-ATPase; DNA d 65.3 2.5 8.6E-05 30.3 1.5 14 11-24 26-39 (149)
400 1t5c_A CENP-E protein, centrom 65.3 2.3 7.9E-05 35.4 1.5 19 6-24 74-94 (349)
401 1e6c_A Shikimate kinase; phosp 65.2 2.4 8.3E-05 30.6 1.5 15 10-24 4-18 (173)
402 2yvu_A Probable adenylyl-sulfa 65.2 2.8 9.4E-05 30.9 1.8 27 6-33 11-37 (186)
403 1pyo_A Caspase-2; apoptosis, c 65.2 24 0.00081 25.8 6.9 38 116-154 57-94 (167)
404 3ilm_A ALR3790 protein; rhodan 65.0 5.9 0.0002 28.0 3.5 38 104-141 54-92 (141)
405 4a74_A DNA repair and recombin 65.0 2.3 7.9E-05 32.2 1.4 19 6-24 23-41 (231)
406 1g41_A Heat shock protein HSLU 65.0 2.8 9.7E-05 36.0 2.0 18 7-24 49-66 (444)
407 1qf9_A UMP/CMP kinase, protein 64.9 2.5 8.4E-05 31.0 1.5 16 9-24 7-22 (194)
408 2iyv_A Shikimate kinase, SK; t 64.9 2.8 9.7E-05 30.7 1.8 15 10-24 4-18 (184)
409 1via_A Shikimate kinase; struc 64.7 2.5 8.5E-05 30.8 1.5 15 10-24 6-20 (175)
410 2cdn_A Adenylate kinase; phosp 64.7 3.3 0.00011 30.9 2.2 18 7-24 19-36 (201)
411 2zfi_A Kinesin-like protein KI 64.7 2.4 8.3E-05 35.5 1.5 19 6-24 86-106 (366)
412 3e4c_A Caspase-1; zymogen, inf 64.7 25 0.00087 28.4 7.6 47 107-154 61-118 (302)
413 1zuh_A Shikimate kinase; alpha 64.6 2.6 8.9E-05 30.4 1.6 16 9-24 8-23 (168)
414 2wbe_C Bipolar kinesin KRP-130 64.5 2.4 8.4E-05 35.5 1.5 19 6-24 97-117 (373)
415 4etp_A Kinesin-like protein KA 64.4 2.4 8.3E-05 36.0 1.5 19 6-24 137-157 (403)
416 4a14_A Kinesin, kinesin-like p 64.4 2.5 8.4E-05 35.1 1.5 19 6-24 80-100 (344)
417 1vma_A Cell division protein F 64.4 5.7 0.0002 32.2 3.7 17 8-24 104-120 (306)
418 2bwj_A Adenylate kinase 5; pho 64.3 2.8 9.4E-05 31.0 1.7 17 8-24 12-28 (199)
419 2heh_A KIF2C protein; kinesin, 64.3 2.4 8.4E-05 35.7 1.5 19 6-24 131-151 (387)
420 1iqp_A RFCS; clamp loader, ext 64.3 4.3 0.00015 32.4 3.0 23 10-33 48-70 (327)
421 3cmu_A Protein RECA, recombina 64.2 5.4 0.00018 40.9 4.1 39 5-51 1078-1116(2050)
422 1cke_A CK, MSSA, protein (cyti 64.2 2.6 8.7E-05 32.0 1.5 16 9-24 6-21 (227)
423 1r6b_X CLPA protein; AAA+, N-t 64.1 4 0.00014 37.4 3.0 26 7-33 206-231 (758)
424 3nwj_A ATSK2; P loop, shikimat 64.0 2.6 9E-05 33.2 1.6 18 7-24 47-64 (250)
425 3l0o_A Transcription terminati 63.9 8.1 0.00028 32.8 4.6 31 4-35 171-201 (427)
426 3u06_A Protein claret segregat 63.8 2.5 8.7E-05 36.0 1.5 19 6-24 135-155 (412)
427 2chq_A Replication factor C sm 63.6 4.9 0.00017 32.0 3.2 23 10-33 40-62 (319)
428 1qtn_A Caspase-8; apoptosis, d 63.5 25 0.00087 25.6 6.8 51 104-155 21-92 (164)
429 2jgn_A DBX, DDX3, ATP-dependen 63.5 13 0.00043 27.4 5.3 40 43-84 45-84 (185)
430 2orv_A Thymidine kinase; TP4A 63.5 5.9 0.0002 30.9 3.4 40 8-55 19-58 (234)
431 3pey_A ATP-dependent RNA helic 63.3 58 0.002 26.3 11.5 38 43-82 242-279 (395)
432 2cbz_A Multidrug resistance-as 63.2 2.7 9.4E-05 32.7 1.5 43 137-182 155-202 (237)
433 3cmw_A Protein RECA, recombina 63.1 4.2 0.00014 40.9 3.1 48 5-60 1428-1475(1706)
434 1nn5_A Similar to deoxythymidy 63.1 3.1 0.00011 31.1 1.8 18 7-24 8-25 (215)
435 3gbj_A KIF13B protein; kinesin 63.1 2.6 9.1E-05 35.1 1.5 19 6-24 89-109 (354)
436 2fz4_A DNA repair protein RAD2 63.1 12 0.00041 28.8 5.2 46 106-164 133-179 (237)
437 1sxj_C Activator 1 40 kDa subu 62.9 4.5 0.00015 33.0 2.8 22 11-33 49-70 (340)
438 3pvs_A Replication-associated 62.9 2.7 9.4E-05 36.1 1.6 21 10-31 52-72 (447)
439 2fwr_A DNA repair protein RAD2 62.9 7.7 0.00026 33.0 4.5 36 106-141 133-169 (472)
440 3h11_A CAsp8 and FADD-like apo 62.8 4.8 0.00017 32.2 2.9 52 103-155 40-91 (272)
441 2nr8_A Kinesin-like protein KI 62.8 2.7 9.3E-05 35.0 1.5 19 6-24 100-120 (358)
442 3qf7_A RAD50; ABC-ATPase, ATPa 62.7 2.8 9.5E-05 35.0 1.5 16 10-25 25-40 (365)
443 1ak2_A Adenylate kinase isoenz 62.7 3.3 0.00011 31.8 1.9 17 8-24 16-32 (233)
444 3asz_A Uridine kinase; cytidin 62.6 2.8 9.7E-05 31.4 1.5 18 7-24 5-22 (211)
445 1m7g_A Adenylylsulfate kinase; 62.5 3.1 0.00011 31.4 1.7 19 6-24 23-41 (211)
446 1ukz_A Uridylate kinase; trans 62.3 3 0.0001 31.1 1.5 15 10-24 17-31 (203)
447 3be4_A Adenylate kinase; malar 62.2 3.1 0.00011 31.6 1.6 17 8-24 5-21 (217)
448 2ce7_A Cell division protein F 62.2 3 0.0001 36.2 1.7 22 9-31 50-71 (476)
449 1fx0_B ATP synthase beta chain 62.2 47 0.0016 28.9 9.1 29 4-33 161-189 (498)
450 2v3c_C SRP54, signal recogniti 62.2 5.9 0.0002 33.8 3.6 24 9-33 100-123 (432)
451 3f9v_A Minichromosome maintena 62.1 3.8 0.00013 36.6 2.4 15 10-24 329-343 (595)
452 2dhr_A FTSH; AAA+ protein, hex 62.0 3.2 0.00011 36.3 1.9 15 10-24 66-80 (499)
453 2pt5_A Shikimate kinase, SK; a 62.0 3 0.0001 29.9 1.5 14 11-24 3-16 (168)
454 1zu4_A FTSY; GTPase, signal re 61.9 6.8 0.00023 32.0 3.7 17 8-24 105-121 (320)
455 1u0j_A DNA replication protein 61.8 3.6 0.00012 32.8 2.0 23 9-32 105-127 (267)
456 1sxj_E Activator 1 40 kDa subu 61.6 3.5 0.00012 33.6 2.0 24 10-34 38-61 (354)
457 3sr0_A Adenylate kinase; phosp 61.5 3 0.0001 31.8 1.4 14 11-24 3-16 (206)
458 2i3b_A HCR-ntpase, human cance 61.4 4.1 0.00014 30.5 2.2 17 8-24 1-17 (189)
459 2owm_A Nckin3-434, related to 61.0 3 0.0001 35.8 1.5 19 6-24 133-153 (443)
460 2jaq_A Deoxyguanosine kinase; 60.9 3.2 0.00011 30.7 1.5 14 11-24 3-16 (205)
461 2bbw_A Adenylate kinase 4, AK4 60.8 3.2 0.00011 32.2 1.5 17 8-24 27-43 (246)
462 3umf_A Adenylate kinase; rossm 60.8 3.7 0.00013 31.6 1.9 15 10-24 31-45 (217)
463 3m6a_A ATP-dependent protease 60.7 3.5 0.00012 36.3 1.9 18 7-24 107-124 (543)
464 2if2_A Dephospho-COA kinase; a 60.7 3.2 0.00011 30.9 1.5 14 11-24 4-17 (204)
465 3b85_A Phosphate starvation-in 60.5 4.2 0.00014 31.0 2.1 18 7-24 21-38 (208)
466 2ghi_A Transport protein; mult 60.2 3.6 0.00012 32.5 1.7 19 6-24 44-62 (260)
467 2pbr_A DTMP kinase, thymidylat 60.1 3.4 0.00012 30.3 1.5 14 11-24 3-16 (195)
468 1e4v_A Adenylate kinase; trans 60.1 3.4 0.00011 31.2 1.5 14 11-24 3-16 (214)
469 1jjv_A Dephospho-COA kinase; P 60.0 3.4 0.00012 30.9 1.5 14 11-24 5-18 (206)
470 2pze_A Cystic fibrosis transme 60.0 3 0.0001 32.2 1.2 19 6-24 32-50 (229)
471 2pcj_A ABC transporter, lipopr 60.0 3 0.0001 32.1 1.2 25 7-33 29-53 (224)
472 3a4m_A L-seryl-tRNA(SEC) kinas 59.9 3.3 0.00011 32.5 1.5 17 8-24 4-20 (260)
473 1tf7_A KAIC; homohexamer, hexa 59.6 7.3 0.00025 34.0 3.8 40 5-52 278-317 (525)
474 1ypw_A Transitional endoplasmi 59.6 3.5 0.00012 38.3 1.8 19 6-24 236-254 (806)
475 1sgw_A Putative ABC transporte 59.5 3.6 0.00012 31.6 1.5 19 6-24 33-51 (214)
476 2ff7_A Alpha-hemolysin translo 59.4 3.4 0.00012 32.4 1.4 27 6-34 33-59 (247)
477 2z0h_A DTMP kinase, thymidylat 59.4 3.6 0.00012 30.3 1.5 14 11-24 3-16 (197)
478 1mv5_A LMRA, multidrug resista 59.2 3.3 0.00011 32.3 1.3 27 6-34 26-52 (243)
479 3auy_A DNA double-strand break 58.9 3.5 0.00012 34.3 1.5 14 11-24 28-41 (371)
480 1htw_A HI0065; nucleotide-bind 58.9 4.1 0.00014 29.5 1.7 19 6-24 31-49 (158)
481 1jr3_A DNA polymerase III subu 58.5 6 0.0002 32.4 2.9 24 10-34 40-63 (373)
482 3tqf_A HPR(Ser) kinase; transf 58.5 5.5 0.00019 29.7 2.3 24 7-31 15-38 (181)
483 3k1j_A LON protease, ATP-depen 58.4 4.1 0.00014 36.4 2.0 19 6-24 58-76 (604)
484 3tlx_A Adenylate kinase 2; str 58.4 3.6 0.00012 32.0 1.4 17 8-24 29-45 (243)
485 3od5_A Caspase-6; caspase doma 58.0 29 0.001 27.6 6.8 50 104-154 19-82 (278)
486 1byi_A Dethiobiotin synthase; 57.9 10 0.00035 28.5 3.9 32 13-52 7-38 (224)
487 1sxj_B Activator 1 37 kDa subu 57.9 7 0.00024 31.1 3.1 23 10-33 44-66 (323)
488 3vr4_A V-type sodium ATPase ca 57.7 77 0.0026 28.2 9.8 21 4-24 228-248 (600)
489 1g6h_A High-affinity branched- 57.5 3.5 0.00012 32.5 1.2 19 6-24 31-49 (257)
490 1svm_A Large T antigen; AAA+ f 57.5 4.4 0.00015 34.0 1.9 20 5-24 166-185 (377)
491 1pui_A ENGB, probable GTP-bind 57.3 4.6 0.00016 30.0 1.8 19 6-24 24-42 (210)
492 1ji0_A ABC transporter; ATP bi 57.3 3.9 0.00013 31.8 1.4 26 6-33 30-55 (240)
493 3b9q_A Chloroplast SRP recepto 57.2 5.2 0.00018 32.4 2.2 26 7-34 99-124 (302)
494 1uf9_A TT1252 protein; P-loop, 57.1 4 0.00014 30.2 1.4 15 10-24 10-24 (203)
495 2xb4_A Adenylate kinase; ATP-b 57.1 4 0.00014 31.1 1.5 14 11-24 3-16 (223)
496 4e22_A Cytidylate kinase; P-lo 57.0 4.5 0.00016 31.6 1.8 18 7-24 26-43 (252)
497 3p45_A Caspase-6; protease, hu 56.8 44 0.0015 24.8 7.1 51 104-155 42-106 (179)
498 3gfo_A Cobalt import ATP-bindi 56.8 3.9 0.00014 32.6 1.4 26 7-34 33-58 (275)
499 2p6r_A Afuhel308 helicase; pro 56.3 10 0.00036 34.3 4.3 67 106-179 68-143 (702)
500 2zu0_C Probable ATP-dependent 56.1 4.6 0.00016 32.0 1.7 19 6-24 44-62 (267)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.3e-38 Score=275.53 Aligned_cols=200 Identities=26% Similarity=0.373 Sum_probs=167.0
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~g 78 (233)
|||.+++|+|++++|+||||||++|++|++++++.........++++||++|||||+.|+++.++++ ..++++.+++|
T Consensus 86 ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~g 165 (434)
T 2db3_A 86 SIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYG 165 (434)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECT
T ss_pred HHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEEC
Confidence 4677889999999999999999999999999998764433456889999999999999999999999 35688999999
Q ss_pred CCCC---------CCeeEEe--------c-------cc-----------------------hh-----------------
Q psy14082 79 GTPK---------GPQDCLP--------L-------HR-----------------------FV----------------- 94 (233)
Q Consensus 79 g~~~---------~~~~lv~--------l-------~r-----------------------~~----------------- 94 (233)
|.+. ..+++|+ + ++ ++
T Consensus 166 g~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT 245 (434)
T 2db3_A 166 GTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSAT 245 (434)
T ss_dssp TSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESC
T ss_pred CCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEecc
Confidence 9763 4567777 0 00 00
Q ss_pred --------------------------------------------hhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCC
Q psy14082 95 --------------------------------------------FNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRER 130 (233)
Q Consensus 95 --------------------------------------------~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~ 130 (233)
..+.+.+.. ...++||||++++.++.+++.|.+.+
T Consensus 246 ~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~-~~~~~lVF~~t~~~a~~l~~~L~~~~ 324 (434)
T 2db3_A 246 FPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSE-QADGTIVFVETKRGADFLASFLSEKE 324 (434)
T ss_dssp CCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHH-CCTTEEEECSSHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHh-CCCCEEEEEeCcHHHHHHHHHHHhCC
Confidence 000002222 23459999999999999999999999
Q ss_pred CeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------ceeeEEe
Q psy14082 131 HSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVIEVV 198 (233)
Q Consensus 131 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~~~~ 198 (233)
+.+..+||+|++++|..++++|++|+.+|||||+++++|+|+|++++|||||+|.+.+.|+ |.++.|+
T Consensus 325 ~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~ 404 (434)
T 2db3_A 325 FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFF 404 (434)
T ss_dssp CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999998666 4667778
Q ss_pred ecc
Q psy14082 199 QDY 201 (233)
Q Consensus 199 ~~~ 201 (233)
++.
T Consensus 405 ~~~ 407 (434)
T 2db3_A 405 DPE 407 (434)
T ss_dssp CTT
T ss_pred ecc
Confidence 743
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.3e-35 Score=254.95 Aligned_cols=216 Identities=24% Similarity=0.296 Sum_probs=177.1
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~g 78 (233)
|||.++.|+|+++.+|||||||++|++|+++.+... ..++++||++||++|+.|+++.++++ ..++++..++|
T Consensus 67 ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g 141 (410)
T 2j0s_A 67 AIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIG 141 (410)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECT
T ss_pred HHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-----cCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEEC
Confidence 356678899999999999999999999999988543 35678999999999999999999998 44678888888
Q ss_pred CCCC---------CCeeEEe--------ccc-------------------------------------------------
Q psy14082 79 GTPK---------GPQDCLP--------LHR------------------------------------------------- 92 (233)
Q Consensus 79 g~~~---------~~~~lv~--------l~r------------------------------------------------- 92 (233)
|.+. ..+++|+ +.+
T Consensus 142 ~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 221 (410)
T 2j0s_A 142 GTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP 221 (410)
T ss_dssp TSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCC
T ss_pred CCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCC
Confidence 8653 3455665 000
Q ss_pred -----------------------------------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCC
Q psy14082 93 -----------------------------------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERH 131 (233)
Q Consensus 93 -----------------------------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~ 131 (233)
..+.+.+.+......++||||++++.++.+++.|.+.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~ 301 (410)
T 2j0s_A 222 HEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANF 301 (410)
T ss_dssp HHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCC
Confidence 000111123334567999999999999999999999999
Q ss_pred eeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------ceeeEEee
Q psy14082 132 SAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVIEVVQ 199 (233)
Q Consensus 132 ~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~~~~~ 199 (233)
.+..+||+|++++|..++++|++|+.+|||||+++++|+|+|++++||+||+|.+...|+ |.++.+++
T Consensus 302 ~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 381 (410)
T 2j0s_A 302 TVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 381 (410)
T ss_dssp CCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEE
T ss_pred ceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEec
Confidence 999999999999999999999999999999999999999999999999999999987555 46777888
Q ss_pred cchHHHHHHHHHHhhcCccccccc
Q psy14082 200 DYEKEKRLFSLIRELGKYTLITQE 223 (233)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~~ 223 (233)
+.+ ...++.++++.+.+++..+
T Consensus 382 ~~~--~~~~~~i~~~~~~~~~~~~ 403 (410)
T 2j0s_A 382 NDD--IRILRDIEQYYSTQIDEMP 403 (410)
T ss_dssp GGG--HHHHHHHHHHTTCCCEECC
T ss_pred HHH--HHHHHHHHHHhCCCceecc
Confidence 654 7788888887776665444
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=251.11 Aligned_cols=202 Identities=32% Similarity=0.412 Sum_probs=165.1
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCC-------------CCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPV-------------KQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~-------------~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
|||.++.|+|++++||||||||++|++|+++.+...... ....++++||++||++|+.|+++.++++
T Consensus 45 ~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (417)
T 2i4i_A 45 AIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKF 124 (417)
T ss_dssp HHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHH
Confidence 356778999999999999999999999999998754211 1233578999999999999999999998
Q ss_pred --hcCCcEEEEEcCCCC---------CCeeEEe---------------ccc-----------------------------
Q psy14082 68 --SSALRNICIFGGTPK---------GPQDCLP---------------LHR----------------------------- 92 (233)
Q Consensus 68 --~~~~~~~~~~gg~~~---------~~~~lv~---------------l~r----------------------------- 92 (233)
..++++..++||.+. ..+++|+ +.+
T Consensus 125 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~ 204 (417)
T 2i4i_A 125 SYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT 204 (417)
T ss_dssp HTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSS
T ss_pred hCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhcc
Confidence 356888999998653 3566776 000
Q ss_pred ---------------------------------------------------------hhhhchHHHhc-CCCCeEEEEec
Q psy14082 93 ---------------------------------------------------------FVFNCQYEMAK-NPAFKVIVFVE 114 (233)
Q Consensus 93 ---------------------------------------------------------~~~~~~~~~~~-~~~~k~iIf~~ 114 (233)
....+.+.+.. ..+.++||||+
T Consensus 205 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~ 284 (417)
T 2i4i_A 205 MPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVE 284 (417)
T ss_dssp CCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECS
T ss_pred CCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEEC
Confidence 00000112222 35789999999
Q ss_pred chhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc---
Q psy14082 115 TKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI--- 191 (233)
Q Consensus 115 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i--- 191 (233)
+++.++.+++.|.+.++.+..+||+|++++|.+++++|++|+.+|||||+++++|+|+|++++||+||+|.+...|+
T Consensus 285 ~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~ 364 (417)
T 2i4i_A 285 TKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI 364 (417)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997665
Q ss_pred ---------ceeeEEeecch
Q psy14082 192 ---------SQVIEVVQDYE 202 (233)
Q Consensus 192 ---------~~~~~~~~~~~ 202 (233)
|.++.++++.+
T Consensus 365 GR~gR~g~~g~~~~~~~~~~ 384 (417)
T 2i4i_A 365 GRTGRVGNLGLATSFFNERN 384 (417)
T ss_dssp TTBCC--CCEEEEEEECGGG
T ss_pred CccccCCCCceEEEEEcccc
Confidence 45666777544
No 4
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=7.9e-34 Score=243.43 Aligned_cols=216 Identities=21% Similarity=0.276 Sum_probs=175.2
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh---cCCcEEEEE
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS---SALRNICIF 77 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~---~~~~~~~~~ 77 (233)
|+|.++.|+|+++.+|||+|||++|++|++..+... ..++++||++||++|+.|+++.++++. +++++..+.
T Consensus 38 ~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~ 112 (391)
T 1xti_A 38 CIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFF 112 (391)
T ss_dssp HHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEEC
T ss_pred HHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEe
Confidence 356678899999999999999999999999887643 346789999999999999999999983 378899999
Q ss_pred cCCCC----------CCeeEEe---------------ccc----------------------------------------
Q psy14082 78 GGTPK----------GPQDCLP---------------LHR---------------------------------------- 92 (233)
Q Consensus 78 gg~~~----------~~~~lv~---------------l~r---------------------------------------- 92 (233)
||.+. ..+++|+ +.+
T Consensus 113 g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 192 (391)
T 1xti_A 113 GGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSA 192 (391)
T ss_dssp TTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEES
T ss_pred CCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEe
Confidence 98653 2466666 000
Q ss_pred --------------------------------------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhh
Q psy14082 93 --------------------------------------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRR 128 (233)
Q Consensus 93 --------------------------------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~ 128 (233)
....+.+.+.....+++||||++++.++.+++.|.+
T Consensus 193 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~ 272 (391)
T 1xti_A 193 TLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVE 272 (391)
T ss_dssp SCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHh
Confidence 000111134455778999999999999999999999
Q ss_pred CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------ceeeE
Q psy14082 129 ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVIE 196 (233)
Q Consensus 129 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~~ 196 (233)
.++.+..+||+|+.++|..++++|++|+.++||||+++++|+|+|++++||+||+|.+...|+ |.++.
T Consensus 273 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~ 352 (391)
T 1xti_A 273 QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 352 (391)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEE
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEE
Confidence 999999999999999999999999999999999999999999999999999999999997555 35566
Q ss_pred EeecchHHHHHHHHHHhhcCcccccc
Q psy14082 197 VVQDYEKEKRLFSLIRELGKYTLITQ 222 (233)
Q Consensus 197 ~~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (233)
++++ +++..+++.+++..+..++..
T Consensus 353 ~~~~-~~~~~~~~~~~~~~~~~~~~~ 377 (391)
T 1xti_A 353 FVSD-ENDAKILNDVQDRFEVNISEL 377 (391)
T ss_dssp EECS-HHHHHHHHHHHHHTTCCCEEC
T ss_pred EEcc-cchHHHHHHHHHHhcCChhhC
Confidence 7765 345667777777655544433
No 5
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.8e-34 Score=247.63 Aligned_cols=216 Identities=21% Similarity=0.268 Sum_probs=171.3
Q ss_pred CCCCCCC--CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh---hcCCcEEEE
Q psy14082 2 LPPSESG--CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF---SSALRNICI 76 (233)
Q Consensus 2 ip~~~~g--~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~---~~~~~~~~~ 76 (233)
||.++.| +|+++.+|||||||++|++|+++.+... ..++++||++||++|+.|+++.++++ ..++++...
T Consensus 56 i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 130 (412)
T 3fht_A 56 LPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYA 130 (412)
T ss_dssp HHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEE
T ss_pred HHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEe
Confidence 4556666 9999999999999999999999988654 45678999999999999999999998 346788888
Q ss_pred EcCCCCC------CeeEEe--------c--------cc------------------------------------------
Q psy14082 77 FGGTPKG------PQDCLP--------L--------HR------------------------------------------ 92 (233)
Q Consensus 77 ~gg~~~~------~~~lv~--------l--------~r------------------------------------------ 92 (233)
.|+.... .+++|+ + .+
T Consensus 131 ~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 210 (412)
T 3fht_A 131 VRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATF 210 (412)
T ss_dssp CTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCC
T ss_pred ecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeec
Confidence 8876542 356666 0 00
Q ss_pred ------------------------------------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCC
Q psy14082 93 ------------------------------------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRER 130 (233)
Q Consensus 93 ------------------------------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~ 130 (233)
....+.+.+......++||||++++.++.++..|.+.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~ 290 (412)
T 3fht_A 211 EDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEG 290 (412)
T ss_dssp CHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCC
Confidence 00011113334466899999999999999999999999
Q ss_pred CeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCc------cccc------------c
Q psy14082 131 HSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSA------NHNI------------S 192 (233)
Q Consensus 131 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~------~~~i------------~ 192 (233)
+.+..+||+|++++|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+. ..|+ |
T Consensus 291 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g 370 (412)
T 3fht_A 291 HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRG 370 (412)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCE
T ss_pred CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999643 3444 3
Q ss_pred eeeEEeecchHHHHHHHHHHhhcCccccccc
Q psy14082 193 QVIEVVQDYEKEKRLFSLIRELGKYTLITQE 223 (233)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 223 (233)
.++.++++ +++...++.+++..+..++..+
T Consensus 371 ~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~ 400 (412)
T 3fht_A 371 LAVNMVDS-KHSMNILNRIQEHFNKKIERLD 400 (412)
T ss_dssp EEEEEECS-HHHHHHHHHHHHHHTCCCEEC-
T ss_pred eEEEEEcC-hhhHHHHHHHHHHHCCccccCC
Confidence 55667765 3446777777776655554433
No 6
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.7e-34 Score=259.26 Aligned_cols=215 Identities=21% Similarity=0.285 Sum_probs=172.8
Q ss_pred CCCCC--CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh------cCCcE
Q psy14082 2 LPPSE--SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS------SALRN 73 (233)
Q Consensus 2 ip~~~--~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~------~~~~~ 73 (233)
||.++ .|+|+++.||||||||++|++|+++++...... ...++++|||+||++|+.|+++.++++. ....+
T Consensus 103 i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~-~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~ 181 (563)
T 3i5x_A 103 IKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYAC 181 (563)
T ss_dssp HHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-ccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeE
Confidence 45566 689999999999999999999999999865321 2346789999999999999999999972 24568
Q ss_pred EEEEcCCCC----------CCeeEEe--------c--------cc-----------------------------------
Q psy14082 74 ICIFGGTPK----------GPQDCLP--------L--------HR----------------------------------- 92 (233)
Q Consensus 74 ~~~~gg~~~----------~~~~lv~--------l--------~r----------------------------------- 92 (233)
..++||.+. ..+++|+ + ++
T Consensus 182 ~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~ 261 (563)
T 3i5x_A 182 VSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS 261 (563)
T ss_dssp EEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSC
T ss_pred EEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccC
Confidence 888888753 4567777 0 00
Q ss_pred ---------------------------------------------------------------hhhhchH-HHhcCCCCe
Q psy14082 93 ---------------------------------------------------------------FVFNCQY-EMAKNPAFK 108 (233)
Q Consensus 93 ---------------------------------------------------------------~~~~~~~-~~~~~~~~k 108 (233)
.+..+.+ ......+.+
T Consensus 262 ~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 341 (563)
T 3i5x_A 262 ADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYK 341 (563)
T ss_dssp TTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCE
T ss_pred ccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCc
Confidence 0000000 112256789
Q ss_pred EEEEecchhHHHHHHHHHhhC---CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCC
Q psy14082 109 VIVFVETKKKVEDITRALRRE---RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQL 185 (233)
Q Consensus 109 ~iIf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~ 185 (233)
+||||++++.++.++..|.+. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.
T Consensus 342 ~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~ 421 (563)
T 3i5x_A 342 AIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPS 421 (563)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCS
T ss_pred EEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCC
Confidence 999999999999999999876 89999999999999999999999999999999999999999999999999999999
Q ss_pred Cccccc------------ceeeEEeecchHHHHHHHHHHhhcCccc
Q psy14082 186 SANHNI------------SQVIEVVQDYEKEKRLFSLIRELGKYTL 219 (233)
Q Consensus 186 ~~~~~i------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (233)
+...|+ |.++.++.+.+ ...++.+++..+..+
T Consensus 422 s~~~y~Qr~GRagR~g~~g~~i~~~~~~e--~~~~~~l~~~~~~~~ 465 (563)
T 3i5x_A 422 ELANYIHRIGRTARSGKEGSSVLFICKDE--LPFVRELEDAKNIVI 465 (563)
T ss_dssp STTHHHHHHTTSSCTTCCEEEEEEEEGGG--HHHHHHHHHHHCCCC
T ss_pred chhhhhhhcCccccCCCCceEEEEEchhH--HHHHHHHHHHhCCCc
Confidence 998776 46677888654 777777877654433
No 7
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=249.97 Aligned_cols=213 Identities=26% Similarity=0.357 Sum_probs=167.5
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEcC
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFGG 79 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~gg 79 (233)
||.++.|+|+++.+|||||||++|++|+++.+... ..+.++||++||++|+.|+++.++.+ ..+..+...+||
T Consensus 71 i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~ 145 (414)
T 3eiq_A 71 ILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGG 145 (414)
T ss_dssp HHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCC
T ss_pred hHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-----CCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECC
Confidence 56678899999999999999999999999988653 35778999999999999999999998 346788888887
Q ss_pred CCC----------CCeeEEe--------c-------cc------------------------------------------
Q psy14082 80 TPK----------GPQDCLP--------L-------HR------------------------------------------ 92 (233)
Q Consensus 80 ~~~----------~~~~lv~--------l-------~r------------------------------------------ 92 (233)
.+. ..+++|+ + .+
T Consensus 146 ~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 225 (414)
T 3eiq_A 146 TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMP 225 (414)
T ss_dssp TTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCC
T ss_pred cchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecC
Confidence 653 4466666 0 00
Q ss_pred -----------------------------------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCC
Q psy14082 93 -----------------------------------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERH 131 (233)
Q Consensus 93 -----------------------------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~ 131 (233)
....+.+.+......++||||++++.++.+++.|.+.++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~ 305 (414)
T 3eiq_A 226 SDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDF 305 (414)
T ss_dssp HHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCC
Confidence 111111244555678999999999999999999999999
Q ss_pred eeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------ceeeEEee
Q psy14082 132 SAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVIEVVQ 199 (233)
Q Consensus 132 ~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~~~~~ 199 (233)
.+..+||+|++++|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+...|+ |.++.+++
T Consensus 306 ~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 385 (414)
T 3eiq_A 306 TVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVT 385 (414)
T ss_dssp CCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEEC
T ss_pred eEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEc
Confidence 999999999999999999999999999999999999999999999999999999987665 35666777
Q ss_pred cchHHHHHHHHHHhhcCccccc
Q psy14082 200 DYEKEKRLFSLIRELGKYTLIT 221 (233)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~ 221 (233)
+.+ ...++.++++.+..++.
T Consensus 386 ~~~--~~~~~~~~~~~~~~~~~ 405 (414)
T 3eiq_A 386 EED--KRTLRDIETFYNTSIEE 405 (414)
T ss_dssp STH--HHHHHHHHHHTTCCCEE
T ss_pred HHH--HHHHHHHHHHHcCCccc
Confidence 654 67778888876655443
No 8
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2e-34 Score=259.94 Aligned_cols=215 Identities=21% Similarity=0.312 Sum_probs=173.6
Q ss_pred CCCCC--CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh------cCCcE
Q psy14082 2 LPPSE--SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS------SALRN 73 (233)
Q Consensus 2 ip~~~--~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~------~~~~~ 73 (233)
||.++ .|+|++++||||||||++|++|+++.+..... ....++++|||+||++|+.|+++.++++. ..+.+
T Consensus 52 i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~ 130 (579)
T 3sqw_A 52 IKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYAC 130 (579)
T ss_dssp HHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-cccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEE
Confidence 45566 68999999999999999999999999986532 12346799999999999999999999973 34678
Q ss_pred EEEEcCCCC----------CCeeEEe--------ccc-------------------------------------------
Q psy14082 74 ICIFGGTPK----------GPQDCLP--------LHR------------------------------------------- 92 (233)
Q Consensus 74 ~~~~gg~~~----------~~~~lv~--------l~r------------------------------------------- 92 (233)
..++||.+. ..+++|+ +.+
T Consensus 131 ~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~ 210 (579)
T 3sqw_A 131 VSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS 210 (579)
T ss_dssp EEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSC
T ss_pred EEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhccc
Confidence 888888653 4567777 000
Q ss_pred ---------------------------------------------------------------hhhhchHHH-hcCCCCe
Q psy14082 93 ---------------------------------------------------------------FVFNCQYEM-AKNPAFK 108 (233)
Q Consensus 93 ---------------------------------------------------------------~~~~~~~~~-~~~~~~k 108 (233)
.+..+.+.+ ....+.+
T Consensus 211 ~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 290 (579)
T 3sqw_A 211 ADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYK 290 (579)
T ss_dssp TTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCE
T ss_pred ccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCc
Confidence 000000011 2256789
Q ss_pred EEEEecchhHHHHHHHHHhhC---CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCC
Q psy14082 109 VIVFVETKKKVEDITRALRRE---RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQL 185 (233)
Q Consensus 109 ~iIf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~ 185 (233)
+||||++++.++.++..|.+. ++.+..+||+|++.+|..++++|++|+.+|||||+++++|+|+|++++||+||+|.
T Consensus 291 ~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~ 370 (579)
T 3sqw_A 291 AIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPS 370 (579)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCS
T ss_pred EEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCC
Confidence 999999999999999999876 89999999999999999999999999999999999999999999999999999999
Q ss_pred Cccccc------------ceeeEEeecchHHHHHHHHHHhhcCccc
Q psy14082 186 SANHNI------------SQVIEVVQDYEKEKRLFSLIRELGKYTL 219 (233)
Q Consensus 186 ~~~~~i------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (233)
+...|+ |.++.++.+.+ ...++.+++.....+
T Consensus 371 s~~~y~Qr~GRagR~g~~g~~i~~~~~~e--~~~~~~l~~~~~~~~ 414 (579)
T 3sqw_A 371 ELANYIHRIGRTARSGKEGSSVLFICKDE--LPFVRELEDAKNIVI 414 (579)
T ss_dssp STTHHHHHHTTSSCTTCCEEEEEEEEGGG--HHHHHHHHHHHCCCC
T ss_pred CHHHhhhhccccccCCCCceEEEEEcccH--HHHHHHHHHHhCCCc
Confidence 998776 46777888654 777888877654443
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=9e-34 Score=242.86 Aligned_cols=209 Identities=25% Similarity=0.325 Sum_probs=168.9
Q ss_pred CCCCCCC--CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEE
Q psy14082 2 LPPSESG--CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIF 77 (233)
Q Consensus 2 ip~~~~g--~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~ 77 (233)
+|.++.| +++++++|||||||++|++|+++++... ..++++||++||++|+.|+++.++++ ..++.+....
T Consensus 36 i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 110 (395)
T 3pey_A 36 LPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-----DASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIV 110 (395)
T ss_dssp HHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEES
T ss_pred HHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-----CCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEe
Confidence 4455666 9999999999999999999999988654 45778999999999999999999998 4567777777
Q ss_pred cCCCC-----CCeeEEe--------c-------cc---------------------------------------------
Q psy14082 78 GGTPK-----GPQDCLP--------L-------HR--------------------------------------------- 92 (233)
Q Consensus 78 gg~~~-----~~~~lv~--------l-------~r--------------------------------------------- 92 (233)
|+... +.+++|+ + .+
T Consensus 111 ~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 190 (395)
T 3pey_A 111 PDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADA 190 (395)
T ss_dssp TTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHH
T ss_pred cCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHH
Confidence 77543 3456666 0 00
Q ss_pred ---------------------------------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCCee
Q psy14082 93 ---------------------------------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERHSA 133 (233)
Q Consensus 93 ---------------------------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~ 133 (233)
....+.+.+......++||||++++.++.+++.|++.++.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~ 270 (395)
T 3pey_A 191 VRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEV 270 (395)
T ss_dssp HHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcE
Confidence 01111113445567899999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCC------Cccccc------------ceee
Q psy14082 134 ICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQL------SANHNI------------SQVI 195 (233)
Q Consensus 134 ~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~------~~~~~i------------~~~~ 195 (233)
..+||+|+.++|.+++++|++|+.+|||||+++++|+|+|++++||+||+|. +...|+ |.++
T Consensus 271 ~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~ 350 (395)
T 3pey_A 271 SILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAI 350 (395)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEE
T ss_pred EEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEE
Confidence 9999999999999999999999999999999999999999999999999998 666444 3455
Q ss_pred EEeecchHHHHHHHHHHhhcC
Q psy14082 196 EVVQDYEKEKRLFSLIRELGK 216 (233)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~~~~ 216 (233)
.++.+ ++....++.+++..+
T Consensus 351 ~~~~~-~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 351 SFVHD-KNSFNILSAIQKYFG 370 (395)
T ss_dssp EEECS-HHHHHHHHHHHHHTT
T ss_pred EEEec-hHHHHHHHHHHHHhC
Confidence 56665 455677777777654
No 10
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=8.7e-34 Score=244.14 Aligned_cols=212 Identities=22% Similarity=0.295 Sum_probs=172.6
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh--cCCcEEEEEcC
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS--SALRNICIFGG 79 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~--~~~~~~~~~gg 79 (233)
+|.++.|+|+++.+|||||||++|++|++..+... ..+.++||++||++|+.|+++.++.+. .++++....|+
T Consensus 52 i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~ 126 (400)
T 1s2m_A 52 IPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGG 126 (400)
T ss_dssp HHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSS
T ss_pred HHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCC
Confidence 45567899999999999999999999999988643 356789999999999999999999994 36788888888
Q ss_pred CCC---------CCeeEEe---------------ccc-------------------------------------------
Q psy14082 80 TPK---------GPQDCLP---------------LHR------------------------------------------- 92 (233)
Q Consensus 80 ~~~---------~~~~lv~---------------l~r------------------------------------------- 92 (233)
.+. +.+++|+ +.+
T Consensus 127 ~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~ 206 (400)
T 1s2m_A 127 TNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPL 206 (400)
T ss_dssp SCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCH
T ss_pred cchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCH
Confidence 652 3456666 000
Q ss_pred --------------------------------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCCeeE
Q psy14082 93 --------------------------------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERHSAI 134 (233)
Q Consensus 93 --------------------------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~ 134 (233)
....+...+......++||||++++.++.+++.|.+.++.+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~ 286 (400)
T 1s2m_A 207 TVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCY 286 (400)
T ss_dssp HHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeE
Confidence 001111134455678999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------ceeeEEeecch
Q psy14082 135 CIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVIEVVQDYE 202 (233)
Q Consensus 135 ~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~~~~~~~~ 202 (233)
.+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+...|+ |.++.++++.+
T Consensus 287 ~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~ 366 (400)
T 1s2m_A 287 YSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWND 366 (400)
T ss_dssp EECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGG
T ss_pred EecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccch
Confidence 999999999999999999999999999999999999999999999999999987555 46677887654
Q ss_pred HHHHHHHHHHhhcCcccc
Q psy14082 203 KEKRLFSLIRELGKYTLI 220 (233)
Q Consensus 203 ~~~~~~~~i~~~~~~~~~ 220 (233)
...++.+++..+.++.
T Consensus 367 --~~~~~~i~~~~~~~~~ 382 (400)
T 1s2m_A 367 --RFNLYKIEQELGTEIA 382 (400)
T ss_dssp --HHHHHHHHHHHTCCCE
T ss_pred --HHHHHHHHHHhCCCcc
Confidence 5566667765555443
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=6.9e-35 Score=257.21 Aligned_cols=181 Identities=24% Similarity=0.321 Sum_probs=69.4
Q ss_pred CCCCCCCC--CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh---hcCCcEEE
Q psy14082 1 MLPPSESG--CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF---SSALRNIC 75 (233)
Q Consensus 1 aip~~~~g--~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~---~~~~~~~~ 75 (233)
|||.++.| +|++++|+||||||++|++|+++++... ..++++|||+||++|+.|+++.++++ ..++.+..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-----~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~ 196 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAY 196 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEE
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-----CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEE
Confidence 35666776 9999999999999999999999988654 35678999999999999999999998 34678888
Q ss_pred EEcCCCC------CCeeEEe--------c--------cc----hhhh---------------------------------
Q psy14082 76 IFGGTPK------GPQDCLP--------L--------HR----FVFN--------------------------------- 96 (233)
Q Consensus 76 ~~gg~~~------~~~~lv~--------l--------~r----~~~~--------------------------------- 96 (233)
..|+... ..+++|+ + .+ ++|.
T Consensus 197 ~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 276 (479)
T 3fmp_B 197 AVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSAT 276 (479)
T ss_dssp ESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESC
T ss_pred EeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCC
Confidence 8887654 2356777 0 00 0000
Q ss_pred -------------------------------------c----------hHHHhcCCCCeEEEEecchhHHHHHHHHHhhC
Q psy14082 97 -------------------------------------C----------QYEMAKNPAFKVIVFVETKKKVEDITRALRRE 129 (233)
Q Consensus 97 -------------------------------------~----------~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~ 129 (233)
+ ...+......++||||++++.++.++..|.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~ 356 (479)
T 3fmp_B 277 FEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE 356 (479)
T ss_dssp CCHHHHHHHHHHSSSEEEEEEC----------------------------------------------------------
T ss_pred CCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhC
Confidence 0 00222335578999999999999999999999
Q ss_pred CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCC
Q psy14082 130 RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLS 186 (233)
Q Consensus 130 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~ 186 (233)
++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+
T Consensus 357 ~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~ 413 (479)
T 3fmp_B 357 GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD 413 (479)
T ss_dssp ---------------------------------------------------------
T ss_pred CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCC
Confidence 999999999999999999999999999999999999999999999999999999953
No 12
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.9e-33 Score=234.49 Aligned_cols=210 Identities=26% Similarity=0.363 Sum_probs=171.3
Q ss_pred CCCCCCC-CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh--cCCcEEEEEc
Q psy14082 2 LPPSESG-CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS--SALRNICIFG 78 (233)
Q Consensus 2 ip~~~~g-~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~--~~~~~~~~~g 78 (233)
+|.++.| +++++.+|||||||++|++|+++.+.. .++.++||++||++|+.|+++.+.++. .++++..+.|
T Consensus 37 i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~ 110 (367)
T 1hv8_A 37 IPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE------NNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYG 110 (367)
T ss_dssp HHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS------SSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECT
T ss_pred HHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc------cCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEEC
Confidence 3455666 799999999999999999999988754 347789999999999999999999983 4678888888
Q ss_pred CCCC--------CCeeEEe---------------ccc-------------------------------------------
Q psy14082 79 GTPK--------GPQDCLP---------------LHR------------------------------------------- 92 (233)
Q Consensus 79 g~~~--------~~~~lv~---------------l~r------------------------------------------- 92 (233)
+.+. +.+++|+ +.+
T Consensus 111 ~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 190 (367)
T 1hv8_A 111 GKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPR 190 (367)
T ss_dssp TSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCH
T ss_pred CcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCH
Confidence 8653 3455555 000
Q ss_pred -----------------------------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEe
Q psy14082 93 -----------------------------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIH 137 (233)
Q Consensus 93 -----------------------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~ 137 (233)
....+. .+....+.++||||++++.++.+++.|.+.++.+..+|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~ 269 (367)
T 1hv8_A 191 EILNLAKKYMGDYSFIKAKINANIEQSYVEVNENERFEALC-RLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIH 269 (367)
T ss_dssp HHHHHHHHHCCSEEEEECCSSSSSEEEEEECCGGGHHHHHH-HHHCSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHcCCCeEEEecCCCCceEEEEEeChHHHHHHHH-HHHhcCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEee
Confidence 000000 12345778999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc------------ceeeEEeecchHHH
Q psy14082 138 GDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI------------SQVIEVVQDYEKEK 205 (233)
Q Consensus 138 ~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i------------~~~~~~~~~~~~~~ 205 (233)
|+++.++|.++++.|++|+.++||||+++++|+|+|++++||+||+|.|...|+ |.++.++++.+ .
T Consensus 270 ~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~--~ 347 (367)
T 1hv8_A 270 GDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRRE--Y 347 (367)
T ss_dssp SSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTS--H
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHH--H
Confidence 999999999999999999999999999999999999999999999999987555 45667777654 6
Q ss_pred HHHHHHHhhcCcccc
Q psy14082 206 RLFSLIRELGKYTLI 220 (233)
Q Consensus 206 ~~~~~i~~~~~~~~~ 220 (233)
..++.+++..+.+++
T Consensus 348 ~~~~~i~~~~~~~~~ 362 (367)
T 1hv8_A 348 KKLRYIERAMKLKIK 362 (367)
T ss_dssp HHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHhCCCCc
Confidence 777888887666554
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.98 E-value=4.1e-34 Score=245.30 Aligned_cols=186 Identities=28% Similarity=0.411 Sum_probs=69.5
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEcC
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFGG 79 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~gg 79 (233)
+|.++.|+|+++.+|||+|||++|++|+++.+... ..++++||++||++|+.|+++.+.++ ..++++..++|+
T Consensus 52 i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~ 126 (394)
T 1fuu_A 52 IMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGG 126 (394)
T ss_dssp HHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSS
T ss_pred HHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----CCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCC
Confidence 45667899999999999999999999999988653 35778999999999999999999998 346788889988
Q ss_pred CCC--------CCeeEEe--------cc-------c--------------------------------------------
Q psy14082 80 TPK--------GPQDCLP--------LH-------R-------------------------------------------- 92 (233)
Q Consensus 80 ~~~--------~~~~lv~--------l~-------r-------------------------------------------- 92 (233)
.+. +.+++|+ +. +
T Consensus 127 ~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 206 (394)
T 1fuu_A 127 TSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPND 206 (394)
T ss_dssp CCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHH
T ss_pred CchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHH
Confidence 663 3445665 00 0
Q ss_pred ------------------------------h---------hhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCCee
Q psy14082 93 ------------------------------F---------VFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERHSA 133 (233)
Q Consensus 93 ------------------------------~---------~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~ 133 (233)
+ ...+.+.+......++||||++++.++.+++.|++.++.+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~ 286 (394)
T 1fuu_A 207 VLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTV 286 (394)
T ss_dssp HHHHHHHHCCSCEEEEECC-------------------------------------------------------------
T ss_pred HHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeE
Confidence 0 0000012233356799999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCcccccc
Q psy14082 134 ICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNIS 192 (233)
Q Consensus 134 ~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i~ 192 (233)
..+||+|+.++|..+++.|++|+.++||||+++++|+|+|++++||+||+|.+...|++
T Consensus 287 ~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Q 345 (394)
T 1fuu_A 287 SAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH 345 (394)
T ss_dssp -----------------------------------------------------------
T ss_pred EEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999886663
No 14
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.97 E-value=2.9e-31 Score=239.24 Aligned_cols=178 Identities=19% Similarity=0.208 Sum_probs=149.4
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGT 80 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~ 80 (233)
|||.++.|+|+++.+|||+|||++|++|++. .+.++||++|+++|+.|+.+.+..+ ++++..+.|+.
T Consensus 52 ~i~~il~g~d~lv~~pTGsGKTl~~~lpal~-----------~~g~~lVisP~~~L~~q~~~~l~~~--gi~~~~l~~~~ 118 (591)
T 2v1x_A 52 TINVTMAGKEVFLVMPTGGGKSLCYQLPALC-----------SDGFTLVICPLISLMEDQLMVLKQL--GISATMLNASS 118 (591)
T ss_dssp HHHHHHTTCCEEEECCTTSCTTHHHHHHHHT-----------SSSEEEEECSCHHHHHHHHHHHHHH--TCCEEECCSSC
T ss_pred HHHHHHcCCCEEEEECCCChHHHHHHHHHHH-----------cCCcEEEEeCHHHHHHHHHHHHHhc--CCcEEEEeCCC
Confidence 3566788999999999999999999999985 1348999999999999999999998 77888888875
Q ss_pred CC---------------CCeeEEe----c----------c------c---------------------------------
Q psy14082 81 PK---------------GPQDCLP----L----------H------R--------------------------------- 92 (233)
Q Consensus 81 ~~---------------~~~~lv~----l----------~------r--------------------------------- 92 (233)
+. ..+++++ + . +
T Consensus 119 ~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~ 198 (591)
T 2v1x_A 119 SKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQF 198 (591)
T ss_dssp CHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHC
T ss_pred CHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhC
Confidence 32 3444444 0 0 0
Q ss_pred ------------------------------------------------------hhhhchHHHh-cCCCCeEEEEecchh
Q psy14082 93 ------------------------------------------------------FVFNCQYEMA-KNPAFKVIVFVETKK 117 (233)
Q Consensus 93 ------------------------------------------------------~~~~~~~~~~-~~~~~k~iIf~~~~~ 117 (233)
.+..+.+.+. ...+.++||||++++
T Consensus 199 ~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~ 278 (591)
T 2v1x_A 199 PNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQK 278 (591)
T ss_dssp TTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHH
T ss_pred CCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHH
Confidence 0000111222 236789999999999
Q ss_pred HHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc
Q psy14082 118 KVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI 191 (233)
Q Consensus 118 ~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i 191 (233)
.++.++..|.+.|+.+..+||+|++++|..++++|++|+.+|||||+++++|+|+|++++||+||+|.|.+.|+
T Consensus 279 ~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~ 352 (591)
T 2v1x_A 279 DSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYY 352 (591)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998777
No 15
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.97 E-value=1.4e-31 Score=238.92 Aligned_cols=99 Identities=25% Similarity=0.354 Sum_probs=65.6
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCC------------CeeEEEeCCCCHHHHHHHHHHhhC-CCCCEEEecccCcCCc
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRER------------HSAICIHGDKTQQDRDYVLNDFRQ-GKAPILVATDVAARGL 170 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~------------~~~~~~~~~~~~~~r~~~~~~f~~-g~~~iLv~T~~~~~Gl 170 (233)
....++||||+++++++.++..|.+.+ .....+||+|++++|.+++++|++ |+.+|||||+++++|+
T Consensus 387 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gl 466 (555)
T 3tbk_A 387 KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGI 466 (555)
T ss_dssp CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCE
T ss_pred CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCC
Confidence 355899999999999999999998764 344555679999999999999999 9999999999999999
Q ss_pred CCCCccEEEEecCCCCccccc----------ceeeEEeecch
Q psy14082 171 DVEDVNTVNIGSLQLSANHNI----------SQVIEVVQDYE 202 (233)
Q Consensus 171 di~~v~~VI~~d~P~~~~~~i----------~~~~~~~~~~~ 202 (233)
|+|++++||+||+|+|+..|+ |.++.++++.+
T Consensus 467 Dlp~v~~VI~~d~p~s~~~~~Qr~GRgR~~~g~~~~l~~~~~ 508 (555)
T 3tbk_A 467 DIAECNLVILYEYVGNVIKMIQTRGRGRARDSKCFLLTSSAD 508 (555)
T ss_dssp ETTSCSEEEEESCCSSCCCEECSSCCCTTTSCEEEEEESCHH
T ss_pred ccccCCEEEEeCCCCCHHHHHHhcCcCcCCCceEEEEEcCCC
Confidence 999999999999999998777 35666777654
No 16
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.97 E-value=7.8e-32 Score=240.81 Aligned_cols=89 Identities=21% Similarity=0.327 Sum_probs=46.9
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhC------------CCeeEEEeCCCCHHHHHHHHHHhhC-CCCCEEEecccCcCCc
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRE------------RHSAICIHGDKTQQDRDYVLNDFRQ-GKAPILVATDVAARGL 170 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~iLv~T~~~~~Gl 170 (233)
..+.++||||+++++++.+++.|.+. |.....+||+|++++|.+++++|++ |+.+|||||+++++|+
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gi 467 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 467 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCC
Confidence 46789999999999999999999876 5556667888999999999999999 9999999999999999
Q ss_pred CCCCccEEEEecCCCCcccccc
Q psy14082 171 DVEDVNTVNIGSLQLSANHNIS 192 (233)
Q Consensus 171 di~~v~~VI~~d~P~~~~~~i~ 192 (233)
|+|++++||+||+|+|+..|++
T Consensus 468 Dip~v~~VI~~d~p~s~~~~~Q 489 (556)
T 4a2p_A 468 DIVQCNLVVLYEYSGNVTKMIQ 489 (556)
T ss_dssp -----CEEEEETCCSCHHHHHH
T ss_pred CchhCCEEEEeCCCCCHHHHHH
Confidence 9999999999999999987763
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.97 E-value=5.9e-31 Score=234.49 Aligned_cols=177 Identities=16% Similarity=0.153 Sum_probs=148.1
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCC
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTP 81 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~ 81 (233)
|+.++.|+|+++.+|||+|||++|++|++.. ...+||++|+++|+.|+.+.++.+ ++.+..+.|+.+
T Consensus 34 i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~lvi~P~~aL~~q~~~~l~~~--gi~~~~l~~~~~ 100 (523)
T 1oyw_A 34 IDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVVVSPLISLMKDQVDQLQAN--GVAAACLNSTQT 100 (523)
T ss_dssp HHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEEECSCHHHHHHHHHHHHHT--TCCEEEECTTSC
T ss_pred HHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEEEECChHHHHHHHHHHHHHc--CCcEEEEeCCCC
Confidence 5667889999999999999999999999842 246999999999999999999987 677777777654
Q ss_pred C-------------CCeeEEe-------------------------------------------ccc-------------
Q psy14082 82 K-------------GPQDCLP-------------------------------------------LHR------------- 92 (233)
Q Consensus 82 ~-------------~~~~lv~-------------------------------------------l~r------------- 92 (233)
. ..+++++ +.+
T Consensus 101 ~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~l 180 (523)
T 1oyw_A 101 REQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMAL 180 (523)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEE
Confidence 2 1333333 000
Q ss_pred ------------------------------------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCC
Q psy14082 93 ------------------------------------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRER 130 (233)
Q Consensus 93 ------------------------------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~ 130 (233)
....+.+.+....+.++||||++++.++.+++.|.+.|
T Consensus 181 SAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g 260 (523)
T 1oyw_A 181 TATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKG 260 (523)
T ss_dssp ESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTT
T ss_pred eCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCC
Confidence 00111113445577899999999999999999999999
Q ss_pred CeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc
Q psy14082 131 HSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI 191 (233)
Q Consensus 131 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i 191 (233)
+.+..+||+|++++|..++++|++|+.+|||||+++++|+|+|++++||+||+|.|.+.|+
T Consensus 261 ~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~ 321 (523)
T 1oyw_A 261 ISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYY 321 (523)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHH
T ss_pred CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998666
No 18
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.97 E-value=4.1e-32 Score=241.34 Aligned_cols=214 Identities=23% Similarity=0.301 Sum_probs=146.7
Q ss_pred CCCCCCCC--CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh--cCCcEEEE
Q psy14082 1 MLPPSESG--CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS--SALRNICI 76 (233)
Q Consensus 1 aip~~~~g--~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~--~~~~~~~~ 76 (233)
||+.+++| +++++.+|||||||++|++|+++++... ..++++||++|+++|+.|+++.+++++ .++.+...
T Consensus 149 ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~-----~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~ 223 (508)
T 3fho_A 149 ALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS-----VPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFG 223 (508)
T ss_dssp SHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT-----CCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC-
T ss_pred HHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC-----CCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEE
Confidence 34556676 9999999999999999999999988654 346789999999999999999999983 34555555
Q ss_pred EcCCCC-----CCeeEEe--------c-------cc--------------------------------------------
Q psy14082 77 FGGTPK-----GPQDCLP--------L-------HR-------------------------------------------- 92 (233)
Q Consensus 77 ~gg~~~-----~~~~lv~--------l-------~r-------------------------------------------- 92 (233)
.++... +.+++|+ + .+
T Consensus 224 ~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~ 303 (508)
T 3fho_A 224 IKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSE 303 (508)
T ss_dssp ---------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCST
T ss_pred eCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCH
Confidence 554332 3456666 0 00
Q ss_pred ----------------------------------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCCe
Q psy14082 93 ----------------------------------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERHS 132 (233)
Q Consensus 93 ----------------------------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~ 132 (233)
......+.+......++||||+++++++.++..|.+.+..
T Consensus 304 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~ 383 (508)
T 3fho_A 304 RVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHT 383 (508)
T ss_dssp HHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCC
T ss_pred HHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCc
Confidence 0011111334456789999999999999999999999999
Q ss_pred eEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCC------CCccccc---c---------ee
Q psy14082 133 AICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQ------LSANHNI---S---------QV 194 (233)
Q Consensus 133 ~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P------~~~~~~i---~---------~~ 194 (233)
+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+||+| .+...|+ | .+
T Consensus 384 v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~ 463 (508)
T 3fho_A 384 VACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVS 463 (508)
T ss_dssp CCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEE
Confidence 9999999999999999999999999999999999999999999999999999 5665444 3 45
Q ss_pred eEEeecchHHHHHHHHHHhhcCcccc
Q psy14082 195 IEVVQDYEKEKRLFSLIRELGKYTLI 220 (233)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~~~~~~~~ 220 (233)
+.++.+. +....++.+++..+..+.
T Consensus 464 i~l~~~~-~~~~~~~~i~~~~~~~i~ 488 (508)
T 3fho_A 464 INFVHDK-KSWEEMNAIQEYFQRPIT 488 (508)
T ss_dssp EEEECTT-TSSSSHHHHHHHSCCCCC
T ss_pred EEEEeCh-HHHHHHHHHHHHHCCCcc
Confidence 5566642 334556667776655444
No 19
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=7.6e-31 Score=220.32 Aligned_cols=175 Identities=28% Similarity=0.403 Sum_probs=145.4
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEcC
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFGG 79 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~gg 79 (233)
+|.++.|+++++.+|||+|||++|++|+++. +.++||++|+++|+.|+++.++++ ..++++..++|+
T Consensus 25 i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~ 93 (337)
T 2z0m_A 25 IPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGG 93 (337)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTT
T ss_pred HHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECC
Confidence 4556789999999999999999999998863 457999999999999999999998 346788888888
Q ss_pred CCC--------CCeeEEe---------------ccc--------------------------------------------
Q psy14082 80 TPK--------GPQDCLP---------------LHR-------------------------------------------- 92 (233)
Q Consensus 80 ~~~--------~~~~lv~---------------l~r-------------------------------------------- 92 (233)
.+. +.+++|+ +.+
T Consensus 94 ~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~ 173 (337)
T 2z0m_A 94 MPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEE 173 (337)
T ss_dssp SCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred cchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEEEEeCcCCHH
Confidence 653 3456666 000
Q ss_pred ---------------------------hhh------hchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCC
Q psy14082 93 ---------------------------FVF------NCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGD 139 (233)
Q Consensus 93 ---------------------------~~~------~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~ 139 (233)
++. ...+.+....+.++||||++++.++.+++.|. ++..+||+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~ 249 (337)
T 2z0m_A 174 IRKVVKDFITNYEEIEACIGLANVEHKFVHVKDDWRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGD 249 (337)
T ss_dssp HHHHHHHHSCSCEEEECSGGGGGEEEEEEECSSSSHHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTT
T ss_pred HHHHHHHhcCCceeeecccccCCceEEEEEeChHHHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCC
Confidence 000 00013455678899999999999999988875 57899999
Q ss_pred CCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc
Q psy14082 140 KTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI 191 (233)
Q Consensus 140 ~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i 191 (233)
|+..+|.+++++|++|+.++||||+++++|+|+|++++||+||+|.|...|+
T Consensus 250 ~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~ 301 (337)
T 2z0m_A 250 LPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYI 301 (337)
T ss_dssp SCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhh
Confidence 9999999999999999999999999999999999999999999999997555
No 20
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.97 E-value=7.4e-31 Score=227.32 Aligned_cols=176 Identities=14% Similarity=0.144 Sum_probs=146.3
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhc-CCcEEEEEcC
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSS-ALRNICIFGG 79 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~-~~~~~~~~gg 79 (233)
|||.++.|+|+++++|||||||++|++|++..+ .+++++||++||++|+.|+++.++++.. ++++..++||
T Consensus 29 ~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~--------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~ 100 (414)
T 3oiy_A 29 WAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--------RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSS 100 (414)
T ss_dssp HHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH--------TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTT
T ss_pred HHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--------cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECC
Confidence 457788999999999999999999999988766 3477999999999999999999999854 7899999999
Q ss_pred CCC-------------CCeeEEe------------------------c----------cchhh--------------hch
Q psy14082 80 TPK-------------GPQDCLP------------------------L----------HRFVF--------------NCQ 98 (233)
Q Consensus 80 ~~~-------------~~~~lv~------------------------l----------~r~~~--------------~~~ 98 (233)
.+. +.+++|+ . .|+++ .+.
T Consensus 101 ~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~ 180 (414)
T 3oiy_A 101 MKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIK 180 (414)
T ss_dssp SCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcc
Confidence 865 2677777 1 01110 000
Q ss_pred -----------H------------------------------------------------------HHhcCCCCeEEEEe
Q psy14082 99 -----------Y------------------------------------------------------EMAKNPAFKVIVFV 113 (233)
Q Consensus 99 -----------~------------------------------------------------------~~~~~~~~k~iIf~ 113 (233)
. .+.. .+.++||||
T Consensus 181 ~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~-~~~~~lVF~ 259 (414)
T 3oiy_A 181 QGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSKEKLVELLEI-FRDGILIFA 259 (414)
T ss_dssp HTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSCCCCCCCSEEEEEESSCCHHHHHHHHHH-HCSSEEEEE
T ss_pred cchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCccccccccchheeeccCHHHHHHHHHHH-cCCCEEEEE
Confidence 1 1222 458999999
Q ss_pred cchhHHHHHHHHHhhCCCeeE-EEeCCCCHHHHHHHHHHhhCCCCCEEEe----cccCcCCcCCCC-ccEEEEecCC--C
Q psy14082 114 ETKKKVEDITRALRRERHSAI-CIHGDKTQQDRDYVLNDFRQGKAPILVA----TDVAARGLDVED-VNTVNIGSLQ--L 185 (233)
Q Consensus 114 ~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~iLv~----T~~~~~Gldi~~-v~~VI~~d~P--~ 185 (233)
++++.++.++..|.+.|+.+. .+||+ +|. +++|++|+.+|||| |+++++|+|+|+ +++||+||+| .
T Consensus 260 ~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~ 333 (414)
T 3oiy_A 260 QTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGP 333 (414)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTT
T ss_pred CCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCC
Confidence 999999999999999999998 88985 333 99999999999999 999999999999 9999999999 8
Q ss_pred Cccccc
Q psy14082 186 SANHNI 191 (233)
Q Consensus 186 ~~~~~i 191 (233)
+...|+
T Consensus 334 ~~~~y~ 339 (414)
T 3oiy_A 334 DVYTYI 339 (414)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 887665
No 21
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.97 E-value=1.2e-30 Score=239.56 Aligned_cols=88 Identities=24% Similarity=0.338 Sum_probs=57.7
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCC----CeeEEE--------eCCCCHHHHHHHHHHhhC-CCCCEEEecccCcCCcC
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRER----HSAICI--------HGDKTQQDRDYVLNDFRQ-GKAPILVATDVAARGLD 171 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-g~~~iLv~T~~~~~Gld 171 (233)
.+.++||||++++.++.+++.|.+.+ +++..+ ||+|++++|.+++++|++ |+.+|||||+++++|+|
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiD 476 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 476 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC--
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCc
Confidence 56799999999999999999999987 888888 559999999999999998 99999999999999999
Q ss_pred CCCccEEEEecCCCCcccccc
Q psy14082 172 VEDVNTVNIGSLQLSANHNIS 192 (233)
Q Consensus 172 i~~v~~VI~~d~P~~~~~~i~ 192 (233)
+|++++||+||+|.|...|++
T Consensus 477 ip~v~~VI~~d~p~s~~~~~Q 497 (696)
T 2ykg_A 477 IAQCNLVILYEYVGNVIKMIQ 497 (696)
T ss_dssp -CCCSEEEEESCC--CCCC--
T ss_pred CccCCEEEEeCCCCCHHHHHH
Confidence 999999999999999987774
No 22
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.96 E-value=4.3e-30 Score=239.26 Aligned_cols=99 Identities=22% Similarity=0.322 Sum_probs=57.0
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhC------------CCeeEEEeCCCCHHHHHHHHHHhhC-CCCCEEEecccCcCCc
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRE------------RHSAICIHGDKTQQDRDYVLNDFRQ-GKAPILVATDVAARGL 170 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~iLv~T~~~~~Gl 170 (233)
..+.++||||+++++++.++..|.+. |.....+||+|++++|..++++|++ |+.+|||||+++++|+
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GI 708 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCC
Confidence 45689999999999999999999874 5566777999999999999999999 9999999999999999
Q ss_pred CCCCccEEEEecCCCCcccccc----------eeeEEeecch
Q psy14082 171 DVEDVNTVNIGSLQLSANHNIS----------QVIEVVQDYE 202 (233)
Q Consensus 171 di~~v~~VI~~d~P~~~~~~i~----------~~~~~~~~~~ 202 (233)
|+|++++||+||+|+|+..|++ .++.++++.+
T Consensus 709 Dlp~v~~VI~yd~p~s~~~~iQr~GRGR~~~g~~i~l~~~~~ 750 (797)
T 4a2q_A 709 DIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTE 750 (797)
T ss_dssp --CCCSEEEEESCCSCHHHHHTC-------CCCEEEEECCHH
T ss_pred CchhCCEEEEeCCCCCHHHHHHhcCCCCCCCceEEEEEeCCc
Confidence 9999999999999999987663 4555666544
No 23
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.96 E-value=1.2e-29 Score=239.29 Aligned_cols=89 Identities=21% Similarity=0.327 Sum_probs=52.8
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhC------------CCeeEEEeCCCCHHHHHHHHHHhhC-CCCCEEEecccCcCCc
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRE------------RHSAICIHGDKTQQDRDYVLNDFRQ-GKAPILVATDVAARGL 170 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~iLv~T~~~~~Gl 170 (233)
..+.++||||+++++++.++..|.+. |.....+||+|++.+|.+++++|++ |+.+|||||+++++|+
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGI 708 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCC
Confidence 45689999999999999999999886 5566677899999999999999999 9999999999999999
Q ss_pred CCCCccEEEEecCCCCcccccc
Q psy14082 171 DVEDVNTVNIGSLQLSANHNIS 192 (233)
Q Consensus 171 di~~v~~VI~~d~P~~~~~~i~ 192 (233)
|+|++++||+||+|+|+..|++
T Consensus 709 Dlp~v~~VI~yD~p~s~~~~iQ 730 (936)
T 4a2w_A 709 DIVQCNLVVLYEYSGNVTKMIQ 730 (936)
T ss_dssp -CCCCSEEEEESCCSCSHHHHC
T ss_pred cchhCCEEEEeCCCCCHHHHHH
Confidence 9999999999999999986663
No 24
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.96 E-value=2.4e-30 Score=237.72 Aligned_cols=86 Identities=27% Similarity=0.392 Sum_probs=77.5
Q ss_pred CCeEEEEecchhHHHHHHHHHhhC------CCeeEEEeCC--------CCHHHHHHHHHHhhCCCCCEEEecccCcCCcC
Q psy14082 106 AFKVIVFVETKKKVEDITRALRRE------RHSAICIHGD--------KTQQDRDYVLNDFRQGKAPILVATDVAARGLD 171 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gld 171 (233)
+.++||||++++.++.+++.|.+. |+++..+||+ |++.+|.+++++|++|+.+|||||+++++|+|
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 789999999999999999999987 8999999999 99999999999999999999999999999999
Q ss_pred CCCccEEEEecCCCCccccc
Q psy14082 172 VEDVNTVNIGSLQLSANHNI 191 (233)
Q Consensus 172 i~~v~~VI~~d~P~~~~~~i 191 (233)
+|++++||+||+|+|+..|+
T Consensus 480 ip~v~~VI~~d~p~s~~~~~ 499 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMV 499 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHH
T ss_pred cccCCEEEEeCCCCCHHHHH
Confidence 99999999999999998666
No 25
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.95 E-value=1.5e-28 Score=234.34 Aligned_cols=170 Identities=14% Similarity=0.129 Sum_probs=143.1
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh-hcCCcEEEEEcC
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF-SSALRNICIFGG 79 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~-~~~~~~~~~~gg 79 (233)
|||.++.|+|++++||||||||++|++|++..+ ..++++|||+||+|||.|+++.++++ ..++++..++||
T Consensus 86 ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~--------~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg 157 (1104)
T 4ddu_A 86 WAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--------RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSS 157 (1104)
T ss_dssp HHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH--------TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTT
T ss_pred HHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH--------hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 467889999999999999999999888888776 34789999999999999999999997 357899999999
Q ss_pred CCC-------------CCeeEEe------------------------c----------cchhh--------------hch
Q psy14082 80 TPK-------------GPQDCLP------------------------L----------HRFVF--------------NCQ 98 (233)
Q Consensus 80 ~~~-------------~~~~lv~------------------------l----------~r~~~--------------~~~ 98 (233)
.+. +.+++|+ . .|+++ .+.
T Consensus 158 ~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~ 237 (1104)
T 4ddu_A 158 MKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIK 237 (1104)
T ss_dssp CCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcc
Confidence 876 3677887 1 11111 001
Q ss_pred -----------H------------------------------------------------------HHhcCCCCeEEEEe
Q psy14082 99 -----------Y------------------------------------------------------EMAKNPAFKVIVFV 113 (233)
Q Consensus 99 -----------~------------------------------------------------------~~~~~~~~k~iIf~ 113 (233)
. .+.. .+.++||||
T Consensus 238 ~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~~~~~~~i~~~~~~~~k~~~L~~ll~~-~~~~~LVF~ 316 (1104)
T 4ddu_A 238 QGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSKEKLVELLEI-FRDGILIFA 316 (1104)
T ss_dssp HTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBCCCCCCCEEEEEESCCCHHHHHHHHHH-HCSSEEEEE
T ss_pred cchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccCCCCcCCceeEEEecCHHHHHHHHHHh-cCCCEEEEE
Confidence 1 1222 358999999
Q ss_pred cchhHHHHHHHHHhhCCCeeE-EEeCCCCHHHHHHHHHHhhCCCCCEEEe----cccCcCCcCCCC-ccEEEEecCCC
Q psy14082 114 ETKKKVEDITRALRRERHSAI-CIHGDKTQQDRDYVLNDFRQGKAPILVA----TDVAARGLDVED-VNTVNIGSLQL 185 (233)
Q Consensus 114 ~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~iLv~----T~~~~~Gldi~~-v~~VI~~d~P~ 185 (233)
++++.++.++..|.+.|+.+. .+||. |.+ +++|++|+.+|||| |++++||+|+|+ |++|||||+|.
T Consensus 317 ~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 317 QTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp SSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 999999999999999999998 99993 555 99999999999999 999999999999 99999999998
No 26
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.95 E-value=3.7e-29 Score=219.26 Aligned_cols=174 Identities=13% Similarity=0.051 Sum_probs=132.9
Q ss_pred CCCCCCCCCce-eEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy14082 1 MLPPSESGCQN-FSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGG 79 (233)
Q Consensus 1 aip~~~~g~d~-i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg 79 (233)
+||.+++|+|+ ++++|||||||++|++|+++.+.. .++++||++|||||+.|+++.+..+ .+..-.+.
T Consensus 11 ~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~g~----~v~~~~~~ 79 (451)
T 2jlq_A 11 VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-------RRLRTLILAPTRVVAAEMEEALRGL----PIRYQTPA 79 (451)
T ss_dssp CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTS----CEEECCTT
T ss_pred HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-------cCCcEEEECCCHHHHHHHHHHhcCc----eeeeeecc
Confidence 47899999998 999999999999999999988764 3678999999999999999998644 11111111
Q ss_pred CC----CCCee------------------------EEe-ccc--------------------------------------
Q psy14082 80 TP----KGPQD------------------------CLP-LHR-------------------------------------- 92 (233)
Q Consensus 80 ~~----~~~~~------------------------lv~-l~r-------------------------------------- 92 (233)
.. ....+ ++- .++
T Consensus 80 ~~~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~ 159 (451)
T 2jlq_A 80 VKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFP 159 (451)
T ss_dssp CSCCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSC
T ss_pred ccccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHhhcCCCceEEEEccCCCccchhhh
Confidence 00 00111 111 000
Q ss_pred -----hh-----------hhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCC
Q psy14082 93 -----FV-----------FNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGK 156 (233)
Q Consensus 93 -----~~-----------~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 156 (233)
++ ....+.+. ...+++||||++++.++.+++.|.+.++.+..+||++. .++++.|++|+
T Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~l~-~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~ 234 (451)
T 2jlq_A 160 QSNSPIEDIEREIPERSWNTGFDWIT-DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTD 234 (451)
T ss_dssp CCSSCEEEEECCCCSSCCSSSCHHHH-HCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSC
T ss_pred cCCCceEecCccCCchhhHHHHHHHH-hCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCC
Confidence 00 00001222 23569999999999999999999999999999999754 57899999999
Q ss_pred CCEEEecccCcCCcCCCCccEEEEec--------------------CCCCccccc
Q psy14082 157 APILVATDVAARGLDVEDVNTVNIGS--------------------LQLSANHNI 191 (233)
Q Consensus 157 ~~iLv~T~~~~~Gldi~~v~~VI~~d--------------------~P~~~~~~i 191 (233)
.+|||||+++++|+|+|+ ++||||| +|.+...|+
T Consensus 235 ~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~ 288 (451)
T 2jlq_A 235 WDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAA 288 (451)
T ss_dssp CSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHH
T ss_pred ceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHH
Confidence 999999999999999999 9999999 999988666
No 27
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.2e-28 Score=232.18 Aligned_cols=178 Identities=13% Similarity=0.060 Sum_probs=142.8
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGT 80 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~ 80 (233)
|||.+..|+|++++|+||||||++|.+|+++.+. .+.++||++||++|+.|+++.+.+++. .+..++|+.
T Consensus 192 AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~--------~g~rvlvl~PtraLa~Q~~~~l~~~~~--~VglltGd~ 261 (1108)
T 3l9o_A 192 AISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------NKQRVIYTSPIKALSNQKYRELLAEFG--DVGLMTGDI 261 (1108)
T ss_dssp HHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH--------TTCEEEEEESSHHHHHHHHHHHHHHTS--SEEEECSSC
T ss_pred HHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh--------cCCeEEEEcCcHHHHHHHHHHHHHHhC--CccEEeCcc
Confidence 4567789999999999999999999999999884 367899999999999999999999855 678889987
Q ss_pred CCC--CeeEEe--------------------------ccc-----------------------------------hhhh-
Q psy14082 81 PKG--PQDCLP--------------------------LHR-----------------------------------FVFN- 96 (233)
Q Consensus 81 ~~~--~~~lv~--------------------------l~r-----------------------------------~~~~- 96 (233)
+.+ .+++|+ .++ +..+
T Consensus 262 ~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l 341 (1108)
T 3l9o_A 262 TINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWI 341 (1108)
T ss_dssp BCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHH
T ss_pred ccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHH
Confidence 654 456666 000 0000
Q ss_pred --------------------------------------------------------------------------------
Q psy14082 97 -------------------------------------------------------------------------------- 96 (233)
Q Consensus 97 -------------------------------------------------------------------------------- 96 (233)
T Consensus 342 ~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (1108)
T 3l9o_A 342 CKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSA 421 (1108)
T ss_dssp HHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC--------------------------
T ss_pred HhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccc
Confidence
Q ss_pred ----------chHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCCe----------------------------------
Q psy14082 97 ----------CQYEMAKNPAFKVIVFVETKKKVEDITRALRRERHS---------------------------------- 132 (233)
Q Consensus 97 ----------~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~---------------------------------- 132 (233)
+-..+......++||||++++.++.++..|...++.
T Consensus 422 ~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~ 501 (1108)
T 3l9o_A 422 KGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILP 501 (1108)
T ss_dssp ---CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTH
T ss_pred cccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHH
Confidence 000112234569999999999999999998654332
Q ss_pred -----eEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCcc
Q psy14082 133 -----AICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSAN 188 (233)
Q Consensus 133 -----~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~ 188 (233)
+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||+++.|.+..
T Consensus 502 ~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~ 562 (1108)
T 3l9o_A 502 LLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQ 562 (1108)
T ss_dssp HHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSS
T ss_pred hhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCcc
Confidence 68899999999999999999999999999999999999999999999988866544
No 28
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.95 E-value=3.2e-28 Score=231.72 Aligned_cols=169 Identities=14% Similarity=0.146 Sum_probs=135.8
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhc--CC----cEE
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSS--AL----RNI 74 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~--~~----~~~ 74 (233)
|||.++.|+|++++||||||||+ |++|++..+.. +++++|||+||++|+.|+++.++.+.. ++ ++.
T Consensus 64 ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-------~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~ 135 (1054)
T 1gku_B 64 WAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-------KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIG 135 (1054)
T ss_dssp HHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-------TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEE
T ss_pred HHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-------cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEE
Confidence 46778899999999999999998 99999998864 367999999999999999999999943 56 789
Q ss_pred EEEcCCCCC-----------CeeEEe--------cc---c-----------hhh--------------------------
Q psy14082 75 CIFGGTPKG-----------PQDCLP--------LH---R-----------FVF-------------------------- 95 (233)
Q Consensus 75 ~~~gg~~~~-----------~~~lv~--------l~---r-----------~~~-------------------------- 95 (233)
.++||.+.. .+++|+ +. + +.+
T Consensus 136 ~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~L~~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~~~~~~~~~~ 215 (1054)
T 1gku_B 136 YYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGE 215 (1054)
T ss_dssp ECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTTSCCCSEEEESCHHHHHTSTHHHHHHHHHTTEEEETTTTEEEEC
T ss_pred EEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHHhccCCEEEEeChhhhhhccccHHHHHHHhCcchhhhhhhcccC
Confidence 999987653 356676 00 0 000
Q ss_pred --------------------------------------------------hchHHHhcCCCCeEEEEecchhHHHHHHHH
Q psy14082 96 --------------------------------------------------NCQYEMAKNPAFKVIVFVETKKKVEDITRA 125 (233)
Q Consensus 96 --------------------------------------------------~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~ 125 (233)
.+. .+....+.++||||++++.++.++..
T Consensus 216 ~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~~k~~~L~-~ll~~~~~~~LVF~~t~~~a~~l~~~ 294 (1054)
T 1gku_B 216 ARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAVNDESISTLS-SILEKLGTGGIIYARTGEEAEEIYES 294 (1054)
T ss_dssp CSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEESCCCTTTTH-HHHTTSCSCEEEEESSHHHHHHHHHT
T ss_pred CceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCceEEEechhHHHHHH-HHHhhcCCCEEEEEcCHHHHHHHHHH
Confidence 000 12223367899999999999999999
Q ss_pred HhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEe----cccCcCCcCCCCc-cEEEEecCC
Q psy14082 126 LRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVA----TDVAARGLDVEDV-NTVNIGSLQ 184 (233)
Q Consensus 126 L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~----T~~~~~Gldi~~v-~~VI~~d~P 184 (233)
|.+. +++..+||+|. .++++|++|+.+|||| ||++++|+|+|+| ++||+||+|
T Consensus 295 L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 295 LKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp TTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred Hhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 9888 99999999983 7889999999999999 9999999999996 999999999
No 29
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.95 E-value=7.9e-28 Score=210.25 Aligned_cols=106 Identities=26% Similarity=0.401 Sum_probs=91.1
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeC--------CCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCc
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHSAICIHG--------DKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDV 175 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~--------~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v 175 (233)
..+.++||||++++.++.+++.|.+.|+.+..+|| +|+.++|.+++++|++|+.+|||||+++++|+|+|++
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~ 438 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEV 438 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTC
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhC
Confidence 46889999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCccccc-----------ceeeEEeecchHHHHHHH
Q psy14082 176 NTVNIGSLQLSANHNI-----------SQVIEVVQDYEKEKRLFS 209 (233)
Q Consensus 176 ~~VI~~d~P~~~~~~i-----------~~~~~~~~~~~~~~~~~~ 209 (233)
++||+||+|+++..|+ |.++.++.+...+++.+.
T Consensus 439 ~~Vi~~d~~~~~~~~~Qr~GR~~R~g~g~~~~l~~~~t~ee~~~~ 483 (494)
T 1wp9_A 439 DLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAKGTRDEAYYW 483 (494)
T ss_dssp CEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEETTSHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHhhccCCCCceEEEEEecCCHHHHHHH
Confidence 9999999999986444 456667776554444444
No 30
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.95 E-value=2.2e-28 Score=213.62 Aligned_cols=170 Identities=15% Similarity=0.148 Sum_probs=123.9
Q ss_pred CCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCC---
Q psy14082 4 PSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGT--- 80 (233)
Q Consensus 4 ~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~--- 80 (233)
.++.|+|++++++||||||++|++|+++.+... +++++|++||++||.|+++.+..+ .+....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-------~~~~lil~Ptr~La~Q~~~~l~~~----~v~~~~~~~~~v 72 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR-------RLRTLVLAPTRVVLSEMKEAFHGL----DVKFHTQAFSAH 72 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTS----CEEEESSCCCCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-------CCeEEEEcchHHHHHHHHHHHhcC----CeEEecccceec
Confidence 467899999999999999999999999988643 678999999999999999999766 111111110
Q ss_pred --C----------------------CCCeeEEe--ccc------------------------------------------
Q psy14082 81 --P----------------------KGPQDCLP--LHR------------------------------------------ 92 (233)
Q Consensus 81 --~----------------------~~~~~lv~--l~r------------------------------------------ 92 (233)
+ .+...+|- .++
T Consensus 73 ~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~ 152 (440)
T 1yks_A 73 GSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATPPGTSDEFPHSNG 152 (440)
T ss_dssp CCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCCSS
T ss_pred cCCccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhhcCC
Confidence 0 00001111 000
Q ss_pred -------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCE
Q psy14082 93 -------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPI 159 (233)
Q Consensus 93 -------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~i 159 (233)
...... .+. ..+.++||||++++.++.+++.|++.++++..+|| ++|.+++++|++|+.+|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~-~l~-~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~v 226 (440)
T 1yks_A 153 EIEDVQTDIPSEPWNTGHD-WIL-ADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDF 226 (440)
T ss_dssp CEEEEECCCCSSCCSSSCH-HHH-HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSE
T ss_pred CeeEeeeccChHHHHHHHH-HHH-hcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceE
Confidence 000000 122 24679999999999999999999999999999999 36889999999999999
Q ss_pred EEecccCcCCcCCCCccEEEE-------------------ecCCCCccccc
Q psy14082 160 LVATDVAARGLDVEDVNTVNI-------------------GSLQLSANHNI 191 (233)
Q Consensus 160 Lv~T~~~~~Gldi~~v~~VI~-------------------~d~P~~~~~~i 191 (233)
||||+++++|+|+| +++||+ ||+|.+..+|+
T Consensus 227 LVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~ 276 (440)
T 1yks_A 227 ILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAA 276 (440)
T ss_dssp EEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHH
T ss_pred EEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHH
Confidence 99999999999999 999996 89999988666
No 31
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.95 E-value=3.6e-28 Score=221.44 Aligned_cols=177 Identities=14% Similarity=0.121 Sum_probs=133.4
Q ss_pred CCCCCC------CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcE-
Q psy14082 1 MLPPSE------SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRN- 73 (233)
Q Consensus 1 aip~~~------~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~- 73 (233)
|||.++ .|+|++++++||||||++|++|+++.+.. +++++||++||++||.|+++.+..+.-+...
T Consensus 228 aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-------~~~~~lilaPTr~La~Q~~~~l~~~~i~~~~~ 300 (673)
T 2wv9_A 228 PVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-------KRLRTAVLAPTRVVAAEMAEALRGLPVRYLTP 300 (673)
T ss_dssp --CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTSCCEECCC
T ss_pred chHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEEEEccHHHHHHHHHHHHhcCCeeeecc
Confidence 578888 89999999999999999999999998764 3678999999999999999999866111000
Q ss_pred ------------EEEEcCC---------C-CCCeeEEe--ccc-------------------------------------
Q psy14082 74 ------------ICIFGGT---------P-KGPQDCLP--LHR------------------------------------- 92 (233)
Q Consensus 74 ------------~~~~gg~---------~-~~~~~lv~--l~r------------------------------------- 92 (233)
..+..+. . .+...+|- .++
T Consensus 301 ~l~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~ 380 (673)
T 2wv9_A 301 AVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPF 380 (673)
T ss_dssp ---CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSS
T ss_pred cccccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhh
Confidence 0001000 0 00011111 000
Q ss_pred ------------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhC
Q psy14082 93 ------------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQ 154 (233)
Q Consensus 93 ------------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 154 (233)
+..... .+ ...+.++||||++++.++.+++.|++.++++..+||+ +|.+++++|++
T Consensus 381 ~~~~~~i~~v~~~~~~~~~~~~l~-~l-~~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~ 454 (673)
T 2wv9_A 381 PDTNSPVHDVSSEIPDRAWSSGFE-WI-TDYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKN 454 (673)
T ss_dssp CCCSSCEEEEECCCCSSCCSSCCH-HH-HSCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGT
T ss_pred cccCCceEEEeeecCHHHHHHHHH-HH-HhCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHC
Confidence 000000 12 2357899999999999999999999999999999994 78999999999
Q ss_pred CCCCEEEecccCcCCcCCCCccEEEE--------------------ecCCCCccccc
Q psy14082 155 GKAPILVATDVAARGLDVEDVNTVNI--------------------GSLQLSANHNI 191 (233)
Q Consensus 155 g~~~iLv~T~~~~~Gldi~~v~~VI~--------------------~d~P~~~~~~i 191 (233)
|+.+|||||+++++|+|+| +++||| ||+|.+.++|+
T Consensus 455 g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~ 510 (673)
T 2wv9_A 455 GDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAA 510 (673)
T ss_dssp CCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHH
T ss_pred CCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHH
Confidence 9999999999999999999 999998 67888887666
No 32
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.95 E-value=8.4e-28 Score=217.46 Aligned_cols=172 Identities=14% Similarity=0.097 Sum_probs=133.0
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGT 80 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~ 80 (233)
+||.++.|+|++++|+||||||++|++|+++++.. +++++||++||||||.|+++.+..+ .+. +.++.
T Consensus 179 ~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-------~~~~vLvl~PtreLa~Qi~~~l~~~----~v~-~~~~~ 246 (618)
T 2whx_A 179 DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-------RRLRTLILAPTRVVAAEMEEALRGL----PIR-YQTPA 246 (618)
T ss_dssp CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTS----CEE-ECCTT
T ss_pred CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEcChHHHHHHHHHHhcCC----cee-Eeccc
Confidence 36778999999999999999999999999999875 3678999999999999999988643 221 11110
Q ss_pred ------CC----------------------CCeeE-Ee-ccc--------------------------------------
Q psy14082 81 ------PK----------------------GPQDC-LP-LHR-------------------------------------- 92 (233)
Q Consensus 81 ------~~----------------------~~~~l-v~-l~r-------------------------------------- 92 (233)
+. +-..+ +- .++
T Consensus 247 l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~ 326 (618)
T 2whx_A 247 VKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFP 326 (618)
T ss_dssp SSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSC
T ss_pred ceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhh
Confidence 00 00001 11 000
Q ss_pred -----------------hhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCC
Q psy14082 93 -----------------FVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQG 155 (233)
Q Consensus 93 -----------------~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 155 (233)
+..+.. .+.. ...++||||++++.++.+++.|.+.++++..+||+ +|.+++++|++|
T Consensus 327 ~~~~~~~~v~~~~~~~~~~~ll~-~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g 400 (618)
T 2whx_A 327 QSNSPIEDIEREIPERSWNTGFD-WITD-YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLT 400 (618)
T ss_dssp CCSSCEEEEECCCCSSCCSSSCH-HHHH-CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHS
T ss_pred ccCCceeeecccCCHHHHHHHHH-HHHh-CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCC
Confidence 000001 1222 46799999999999999999999999999999985 688899999999
Q ss_pred CCCEEEecccCcCCcCCCCccEE--------------------EEecCCCCccccc
Q psy14082 156 KAPILVATDVAARGLDVEDVNTV--------------------NIGSLQLSANHNI 191 (233)
Q Consensus 156 ~~~iLv~T~~~~~Gldi~~v~~V--------------------I~~d~P~~~~~~i 191 (233)
+.+||||||++++|+|+| +++| ||||+|.+.++|+
T Consensus 401 ~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yi 455 (618)
T 2whx_A 401 DWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAA 455 (618)
T ss_dssp CCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHH
T ss_pred CcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHH
Confidence 999999999999999997 9988 8888899988666
No 33
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.95 E-value=5.6e-28 Score=220.74 Aligned_cols=96 Identities=15% Similarity=0.129 Sum_probs=83.9
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCC--------Ccc
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVE--------DVN 176 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~--------~v~ 176 (233)
.+.++||||+|++.++.++..|.+.|+++.++||++++.++..+.++|+.| .|+||||+++||+|++ ++.
T Consensus 431 ~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl 508 (844)
T 1tf5_A 431 TGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGL 508 (844)
T ss_dssp HTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSE
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCc
Confidence 356899999999999999999999999999999999888887666666655 7999999999999999 788
Q ss_pred EEEEecCCCCccccc------------ceeeEEeecch
Q psy14082 177 TVNIGSLQLSANHNI------------SQVIEVVQDYE 202 (233)
Q Consensus 177 ~VI~~d~P~~~~~~i------------~~~~~~~~~~~ 202 (233)
+|||||+|.|...|+ |.++.|++..+
T Consensus 509 ~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 509 AVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred EEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 999999999998666 46667887655
No 34
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.94 E-value=3e-28 Score=213.91 Aligned_cols=174 Identities=13% Similarity=0.090 Sum_probs=126.4
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEE-cCCCC-
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIF-GGTPK- 82 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~-gg~~~- 82 (233)
+..|+++++++|||||||++|++|+++.+.. .++++||++|||+|+.|+++.+..+.-......+. +..+.
T Consensus 18 l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~g~~v~~~~~~~~~~~t~~~ 90 (459)
T 2z83_A 18 LRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-------QRLRTAVLAPTRVVAAEMAEALRGLPVRYQTSAVQREHQGNE 90 (459)
T ss_dssp GSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEECSHHHHHHHHHHTTTSCEEECC--------CCC
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEECchHHHHHHHHHHhcCceEeEEecccccCCCCCc
Confidence 4668999999999999999999999998864 36789999999999999999987541100000000 00000
Q ss_pred ---------------------CCeeEEe--ccc-------------------------------------------hh--
Q psy14082 83 ---------------------GPQDCLP--LHR-------------------------------------------FV-- 94 (233)
Q Consensus 83 ---------------------~~~~lv~--l~r-------------------------------------------~~-- 94 (233)
+-..+|- .++ +.
T Consensus 91 ~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~~~~~~~~~pi~~~ 170 (459)
T 2z83_A 91 IVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPGTTDPFPDSNAPIHDL 170 (459)
T ss_dssp SEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCCSSCEEEE
T ss_pred EEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhccCCccEEEEEcCCCcchhhhccCCCCeEEe
Confidence 0000111 000 00
Q ss_pred ---------hhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc
Q psy14082 95 ---------FNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV 165 (233)
Q Consensus 95 ---------~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~ 165 (233)
....+.+. ...+++||||++++.++.+++.|++.++.+..+||+ +|..++++|++|+.+|||||++
T Consensus 171 ~~~~~~~~~~~~~~~l~-~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v 245 (459)
T 2z83_A 171 QDEIPDRAWSSGYEWIT-EYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDI 245 (459)
T ss_dssp ECCCCSSCCSSCCHHHH-HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSC
T ss_pred cccCCcchhHHHHHHHH-hcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECCh
Confidence 00000222 236799999999999999999999999999999995 6788999999999999999999
Q ss_pred CcCCcCCCCccEEEE--------------------ecCCCCccccc
Q psy14082 166 AARGLDVEDVNTVNI--------------------GSLQLSANHNI 191 (233)
Q Consensus 166 ~~~Gldi~~v~~VI~--------------------~d~P~~~~~~i 191 (233)
+++|+|+|+ ++||+ ||+|.|...|+
T Consensus 246 ~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~ 290 (459)
T 2z83_A 246 SEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAA 290 (459)
T ss_dssp C---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHH
T ss_pred HHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHH
Confidence 999999999 99999 77999988666
No 35
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.94 E-value=2.8e-27 Score=213.63 Aligned_cols=170 Identities=15% Similarity=0.066 Sum_probs=132.3
Q ss_pred CCCC-CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy14082 2 LPPS-ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGT 80 (233)
Q Consensus 2 ip~~-~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~ 80 (233)
||.. ..++|++++|+||||||++|.+|+++ ++.++||++||||||.|+++.+.+.. +..+...+|+.
T Consensus 225 i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-----------~g~~vLVl~PTReLA~Qia~~l~~~~-g~~vg~~vG~~ 292 (666)
T 3o8b_A 225 PPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-----------QGYKVLVLNPSVAATLGFGAYMSKAH-GIDPNIRTGVR 292 (666)
T ss_dssp CCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-----------TTCCEEEEESCHHHHHHHHHHHHHHH-SCCCEEECSSC
T ss_pred HHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-----------CCCeEEEEcchHHHHHHHHHHHHHHh-CCCeeEEECcE
Confidence 4444 46888999999999999999999885 24589999999999999999887763 45566677775
Q ss_pred C--CCCeeEEe-----ccc-----------------------------hhhhchH-------------------------
Q psy14082 81 P--KGPQDCLP-----LHR-----------------------------FVFNCQY------------------------- 99 (233)
Q Consensus 81 ~--~~~~~lv~-----l~r-----------------------------~~~~~~~------------------------- 99 (233)
. .+.+++|+ +.+ +...+..
T Consensus 293 ~~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~~~~p~i~ 372 (666)
T 3o8b_A 293 TITTGAPVTYSTYGKFLADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIE 372 (666)
T ss_dssp EECCCCSEEEEEHHHHHHTTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCCCCCCTTEE
T ss_pred eccCCCCEEEECcHHHHhCCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcccccCCcceE
Confidence 3 34566666 000 0000000
Q ss_pred -----------------HHhcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEe
Q psy14082 100 -----------------EMAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVA 162 (233)
Q Consensus 100 -----------------~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~ 162 (233)
.+.....+++||||++++.++.+++.|++.++++..+||+|++++ |+++..+||||
T Consensus 373 ~v~~~~~~~i~~~~~~~~l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVA 445 (666)
T 3o8b_A 373 EVALSNTGEIPFYGKAIPIEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVA 445 (666)
T ss_dssp EEECBSCSSEEETTEEECGGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEE
T ss_pred EEeecccchhHHHHhhhhhhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEE
Confidence 122335679999999999999999999999999999999999875 55666799999
Q ss_pred cccCcCCcCCCCccEEE----------Eec-----------CCCCccccc
Q psy14082 163 TDVAARGLDVEDVNTVN----------IGS-----------LQLSANHNI 191 (233)
Q Consensus 163 T~~~~~Gldi~~v~~VI----------~~d-----------~P~~~~~~i 191 (233)
||++++|+|++ +++|| ||| +|.+.++|+
T Consensus 446 TdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syi 494 (666)
T 3o8b_A 446 TDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRS 494 (666)
T ss_dssp CTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHH
T ss_pred CChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHH
Confidence 99999999997 99988 788 899987666
No 36
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.94 E-value=4.5e-27 Score=204.91 Aligned_cols=168 Identities=10% Similarity=0.089 Sum_probs=126.4
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCC--CC
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPK--GP 84 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~--~~ 84 (233)
.|+|+++++|||||||++|++|+++.+.. .+.+++|++||++|+.|+++.+. ++.+....|+... .+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-------~g~~~lvl~Pt~~La~Q~~~~~~----~~~v~~~~~~~~~~~~~ 69 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-------KRLRTVILAPTRVVASEMYEALR----GEPIRYMTPAVQSERTG 69 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT----TSCEEEC---------C
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEECcHHHHHHHHHHHhC----CCeEEEEecCccccCCC
Confidence 47899999999999999999999977764 36789999999999999998875 3445444443111 00
Q ss_pred -ee------------------------EE-e-ccc-----------hh--------------------------------
Q psy14082 85 -QD------------------------CL-P-LHR-----------FV-------------------------------- 94 (233)
Q Consensus 85 -~~------------------------lv-~-l~r-----------~~-------------------------------- 94 (233)
.+ +| - .++ +.
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~i~ 149 (431)
T 2v6i_A 70 NEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPSNSPII 149 (431)
T ss_dssp CCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCCCSSCCE
T ss_pred CceEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcCCCCcee
Confidence 01 11 1 000 00
Q ss_pred -----------hhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEec
Q psy14082 95 -----------FNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVAT 163 (233)
Q Consensus 95 -----------~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T 163 (233)
....+.+. ...+++||||++++.++.+++.|++.++++..+||+ +|.+++++|++|+.+|||||
T Consensus 150 ~~~~~~~~~~~~~~~~~l~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT 224 (431)
T 2v6i_A 150 DEETRIPDKAWNSGYEWIT-EFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITT 224 (431)
T ss_dssp EEECCCCSSCCSSCCHHHH-SCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEEC
T ss_pred eccccCCHHHHHHHHHHHH-cCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEEC
Confidence 00001222 246789999999999999999999999999999997 57889999999999999999
Q ss_pred ccCcCCcCCCCccE-----------------EEEecCCCCccccc
Q psy14082 164 DVAARGLDVEDVNT-----------------VNIGSLQLSANHNI 191 (233)
Q Consensus 164 ~~~~~Gldi~~v~~-----------------VI~~d~P~~~~~~i 191 (233)
+++++|+|+| +++ ||+++.|.+..+|+
T Consensus 225 ~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~ 268 (431)
T 2v6i_A 225 DISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAA 268 (431)
T ss_dssp GGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHH
T ss_pred chHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHH
Confidence 9999999999 655 67889999988666
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.94 E-value=5.8e-28 Score=222.75 Aligned_cols=170 Identities=18% Similarity=0.136 Sum_probs=137.7
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhc--CCcEEEEEcCCCC----
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSS--ALRNICIFGGTPK---- 82 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~--~~~~~~~~gg~~~---- 82 (233)
.|++++++||||||++|++|+++.+. .+.+++|++||++|+.|+++.+.+++. ++++..++|+.+.
T Consensus 390 ~~~Ll~a~TGSGKTlvall~il~~l~--------~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~ 461 (780)
T 1gm5_A 390 MNRLLQGDVGSGKTVVAQLAILDNYE--------AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKE 461 (780)
T ss_dssp CCCEEECCSSSSHHHHHHHHHHHHHH--------HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHH
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHH--------cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHH
Confidence 58999999999999999999999874 367899999999999999999999854 6899999998653
Q ss_pred ---------CCeeEEe----c------cc---------------------------------------------------
Q psy14082 83 ---------GPQDCLP----L------HR--------------------------------------------------- 92 (233)
Q Consensus 83 ---------~~~~lv~----l------~r--------------------------------------------------- 92 (233)
+.+++|+ + .+
T Consensus 462 ~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDEaHr~g~~qr~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~ 541 (780)
T 1gm5_A 462 KIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQREALMNKGKMVDTLVMSATPIPRSMALAFYGDLDV 541 (780)
T ss_dssp HHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC-----CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSC
T ss_pred HHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEecccchhhHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcce
Confidence 3566776 0 00
Q ss_pred -hh--------------------hhchHHH--hcCCCCeEEEEecch--------hHHHHHHHHHhh---CCCeeEEEeC
Q psy14082 93 -FV--------------------FNCQYEM--AKNPAFKVIVFVETK--------KKVEDITRALRR---ERHSAICIHG 138 (233)
Q Consensus 93 -~~--------------------~~~~~~~--~~~~~~k~iIf~~~~--------~~~~~l~~~L~~---~~~~~~~~~~ 138 (233)
.+ ..+.+.+ ....+.+++|||++. ..++.+++.|.+ .++.+..+||
T Consensus 542 s~i~~~p~~r~~i~~~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG 621 (780)
T 1gm5_A 542 TVIDEMPPGRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHG 621 (780)
T ss_dssp EEECCCCSSCCCCEECCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCS
T ss_pred eeeeccCCCCcceEEEEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeC
Confidence 00 0000011 224678899999965 457888888887 4688999999
Q ss_pred CCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCC
Q psy14082 139 DKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLS 186 (233)
Q Consensus 139 ~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~ 186 (233)
+|++++|..++++|++|+.+|||||+++++|+|+|++++||++|.|..
T Consensus 622 ~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~ 669 (780)
T 1gm5_A 622 RLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERF 669 (780)
T ss_dssp SSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSS
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCC
Confidence 999999999999999999999999999999999999999999999963
No 38
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.94 E-value=1e-25 Score=207.69 Aligned_cols=183 Identities=15% Similarity=0.099 Sum_probs=142.6
Q ss_pred CCC-CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh-hcCCcEEEEEcC
Q psy14082 2 LPP-SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF-SSALRNICIFGG 79 (233)
Q Consensus 2 ip~-~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~-~~~~~~~~~~gg 79 (233)
++. +..|+++++++|||||||++|.+|+++.+... +.+++|++|+|+|+.|+++.++.+ ..++++...+|+
T Consensus 39 i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~ 111 (715)
T 2va8_A 39 VKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGD 111 (715)
T ss_dssp HHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSC
T ss_pred HHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 344 67899999999999999999999999887642 568999999999999999999766 337889999998
Q ss_pred CCCC------CeeEEe---------------ccc----------------------------------------------
Q psy14082 80 TPKG------PQDCLP---------------LHR---------------------------------------------- 92 (233)
Q Consensus 80 ~~~~------~~~lv~---------------l~r---------------------------------------------- 92 (233)
.... .+++|+ +++
T Consensus 112 ~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~ii~lSATl~n~~~~ 191 (715)
T 2va8_A 112 YDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNLLALSATISNYKQI 191 (715)
T ss_dssp SSSCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEEEEEESCCTTHHHH
T ss_pred CCCchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcccCcEEEEcCCCCCHHHH
Confidence 6653 355665 000
Q ss_pred ---------------------h-----------h-------------hhchHHH--hcCCCCeEEEEecchhHHHHHHHH
Q psy14082 93 ---------------------F-----------V-------------FNCQYEM--AKNPAFKVIVFVETKKKVEDITRA 125 (233)
Q Consensus 93 ---------------------~-----------~-------------~~~~~~~--~~~~~~k~iIf~~~~~~~~~l~~~ 125 (233)
+ + +...+.+ ....++++||||++++.++.++..
T Consensus 192 ~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~ 271 (715)
T 2va8_A 192 AKWLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALK 271 (715)
T ss_dssp HHHHTCEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHH
T ss_pred HHHhCCCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHH
Confidence 0 0 0000000 113568999999999999999999
Q ss_pred HhhCC------------------------------------CeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCC
Q psy14082 126 LRRER------------------------------------HSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARG 169 (233)
Q Consensus 126 L~~~~------------------------------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~G 169 (233)
|.+.. ..+..+||+|+.++|..+++.|++|..+|||||+++++|
T Consensus 272 L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~G 351 (715)
T 2va8_A 272 IANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAG 351 (715)
T ss_dssp HHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGS
T ss_pred HHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcc
Confidence 97642 248899999999999999999999999999999999999
Q ss_pred cCCCCccEEEE----ec-------CCCCccccc
Q psy14082 170 LDVEDVNTVNI----GS-------LQLSANHNI 191 (233)
Q Consensus 170 ldi~~v~~VI~----~d-------~P~~~~~~i 191 (233)
+|+|++++||+ || .|.|...|+
T Consensus 352 idip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~ 384 (715)
T 2va8_A 352 VNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYK 384 (715)
T ss_dssp SCCCBSEEEECCC--------------CHHHHH
T ss_pred cCCCceEEEEeCCeeccccCCCCCCcCCHHHHH
Confidence 99999999999 99 788876444
No 39
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.94 E-value=5.2e-27 Score=208.28 Aligned_cols=181 Identities=15% Similarity=0.126 Sum_probs=145.8
Q ss_pred CCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEcCC
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFGGT 80 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~gg~ 80 (233)
+.++.++|+++.++||+|||++|+.|+...+.. .+.++|||+||++|+.|+++.++++ +++.++..+.|+.
T Consensus 123 ~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~ 195 (510)
T 2oca_A 123 FEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGA 195 (510)
T ss_dssp HHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-------CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGC
T ss_pred HHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-------CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCC
Confidence 345667899999999999999999998887753 2348999999999999999999998 5567888888887
Q ss_pred CC------CCeeEEe-----------------------------------cc----------------------------
Q psy14082 81 PK------GPQDCLP-----------------------------------LH---------------------------- 91 (233)
Q Consensus 81 ~~------~~~~lv~-----------------------------------l~---------------------------- 91 (233)
+. ..+++|+ +.
T Consensus 196 ~~~~~~~~~~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~~~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~ 275 (510)
T 2oca_A 196 SKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGM 275 (510)
T ss_dssp CTTGGGCTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGCCHHHHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHH
T ss_pred ccccccccCCcEEEEeHHHHhhchhhhhhcCCEEEEECCcCCCcccHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHh
Confidence 65 3456666 00
Q ss_pred ------------------------------------------chhh---h----------chHHH---hcCCCCeEEEEe
Q psy14082 92 ------------------------------------------RFVF---N----------CQYEM---AKNPAFKVIVFV 113 (233)
Q Consensus 92 ------------------------------------------r~~~---~----------~~~~~---~~~~~~k~iIf~ 113 (233)
++-. . +.+.+ ....+.+++||+
T Consensus 276 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~ 355 (510)
T 2oca_A 276 FGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFK 355 (510)
T ss_dssp HCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred hCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 0000 0 00011 112445566666
Q ss_pred cchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEec-ccCcCCcCCCCccEEEEecCCCCccccc
Q psy14082 114 ETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVAT-DVAARGLDVEDVNTVNIGSLQLSANHNI 191 (233)
Q Consensus 114 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T-~~~~~Gldi~~v~~VI~~d~P~~~~~~i 191 (233)
+ .++++.+++.|.+.+.++..+||+|+.++|.+++++|++|+.+||||| +++++|+|+|++++||++|+|.+...|+
T Consensus 356 ~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~ 433 (510)
T 2oca_A 356 H-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVL 433 (510)
T ss_dssp S-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHH
T ss_pred c-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHH
Confidence 6 888999999999998899999999999999999999999999999999 9999999999999999999999987555
No 40
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.4e-26 Score=219.28 Aligned_cols=180 Identities=14% Similarity=0.050 Sum_probs=145.2
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCC
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTP 81 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~ 81 (233)
|+.+.+|+++++++|||||||++|.+|++..+. .+.++||++||++|+.|+++.+.+++. ++..++|+.+
T Consensus 95 i~~l~~g~~vLV~apTGSGKTlva~lai~~~l~--------~g~rvL~l~PtkaLa~Q~~~~l~~~~~--~vglltGd~~ 164 (1010)
T 2xgj_A 95 ISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------NKQRVIYTSPIKALSNQKYRELLAEFG--DVGLMTGDIT 164 (1010)
T ss_dssp HHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH--------TTCEEEEEESSHHHHHHHHHHHHHHHS--CEEEECSSCE
T ss_pred HHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc--------cCCeEEEECChHHHHHHHHHHHHHHhC--CEEEEeCCCc
Confidence 445677999999999999999999999998773 367999999999999999999999865 7788888876
Q ss_pred CC--CeeEEe---------------ccc----------------------------------------------hhhhch
Q psy14082 82 KG--PQDCLP---------------LHR----------------------------------------------FVFNCQ 98 (233)
Q Consensus 82 ~~--~~~lv~---------------l~r----------------------------------------------~~~~~~ 98 (233)
.+ .+++|+ +++ +..++.
T Consensus 165 ~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~~e~a~~l~ 244 (1010)
T 2xgj_A 165 INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWIC 244 (1010)
T ss_dssp ECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHH
T ss_pred cCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHH
Confidence 43 456666 000 000000
Q ss_pred --------------------------------------------------------------------------------
Q psy14082 99 -------------------------------------------------------------------------------- 98 (233)
Q Consensus 99 -------------------------------------------------------------------------------- 98 (233)
T Consensus 245 ~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~ 324 (1010)
T 2xgj_A 245 KIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAK 324 (1010)
T ss_dssp HHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC--------------------------
T ss_pred hhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccccccccccccccccccccccc
Confidence
Q ss_pred -----------HHHhcCCCCeEEEEecchhHHHHHHHHHhhCCCe-----------------------------------
Q psy14082 99 -----------YEMAKNPAFKVIVFVETKKKVEDITRALRRERHS----------------------------------- 132 (233)
Q Consensus 99 -----------~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~----------------------------------- 132 (233)
+.+......++||||++++.++.++..|.+.++.
T Consensus 325 ~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~ 404 (1010)
T 2xgj_A 325 GDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPL 404 (1010)
T ss_dssp ----CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHH
Confidence 0001112348999999999999999999775442
Q ss_pred ----eEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEE----ecC----CCCccccc
Q psy14082 133 ----AICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNI----GSL----QLSANHNI 191 (233)
Q Consensus 133 ----~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~----~d~----P~~~~~~i 191 (233)
+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||+ ||. |.++.+|+
T Consensus 405 l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~ 475 (1010)
T 2xgj_A 405 LRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYI 475 (1010)
T ss_dssp HHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHH
T ss_pred HhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHh
Confidence 788999999999999999999999999999999999999999999999 999 88887555
No 41
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.94 E-value=5.3e-26 Score=209.70 Aligned_cols=183 Identities=17% Similarity=0.173 Sum_probs=146.0
Q ss_pred CCC-CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh-hcCCcEEEEEcC
Q psy14082 2 LPP-SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF-SSALRNICIFGG 79 (233)
Q Consensus 2 ip~-~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~-~~~~~~~~~~gg 79 (233)
++. +..|+++++++|||||||++|.+|+++.+... +.+++|++|+++|+.|+++.++++ ..++++..++|+
T Consensus 32 i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~ 104 (720)
T 2zj8_A 32 LKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGD 104 (720)
T ss_dssp HTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSC
T ss_pred HHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCC
Confidence 455 67899999999999999999999999988743 578999999999999999999776 337899999998
Q ss_pred CCCC------CeeEEe---------------c-----------------cc-----------------------------
Q psy14082 80 TPKG------PQDCLP---------------L-----------------HR----------------------------- 92 (233)
Q Consensus 80 ~~~~------~~~lv~---------------l-----------------~r----------------------------- 92 (233)
...+ .+++|+ + .|
T Consensus 105 ~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~~~ 184 (720)
T 2zj8_A 105 YDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGNPEE 184 (720)
T ss_dssp SSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSCHHH
T ss_pred CCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCCHHH
Confidence 6653 345665 0 00
Q ss_pred ------------------------------hhh-------hchHHH--hcCCCCeEEEEecchhHHHHHHHHHhhC----
Q psy14082 93 ------------------------------FVF-------NCQYEM--AKNPAFKVIVFVETKKKVEDITRALRRE---- 129 (233)
Q Consensus 93 ------------------------------~~~-------~~~~~~--~~~~~~k~iIf~~~~~~~~~l~~~L~~~---- 129 (233)
+.+ ...+.+ ....++++||||++++.++.++..|.+.
T Consensus 185 ~~~~l~~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~ 264 (720)
T 2zj8_A 185 LAEWLNAELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSL 264 (720)
T ss_dssp HHHHTTEEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGG
T ss_pred HHHHhCCcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHh
Confidence 000 000000 0125689999999999999999998753
Q ss_pred --------------C---------------CeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEE
Q psy14082 130 --------------R---------------HSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNI 180 (233)
Q Consensus 130 --------------~---------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~ 180 (233)
+ ..+..+||+|+.++|..+++.|++|..+|||||+.+++|+|+|++++||+
T Consensus 265 ~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~ 344 (720)
T 2zj8_A 265 LTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIR 344 (720)
T ss_dssp SCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEEC
T ss_pred cChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEc
Confidence 1 24889999999999999999999999999999999999999999999999
Q ss_pred ----ec----CCCCccccc
Q psy14082 181 ----GS----LQLSANHNI 191 (233)
Q Consensus 181 ----~d----~P~~~~~~i 191 (233)
|| .|.+...|+
T Consensus 345 ~~~~yd~~g~~~~s~~~~~ 363 (720)
T 2zj8_A 345 DIWRYSDFGMERIPIIEVH 363 (720)
T ss_dssp CSEECCSSSCEECCHHHHH
T ss_pred CCeeecCCCCccCCHHHHH
Confidence 77 577765444
No 42
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.94 E-value=1.6e-27 Score=209.76 Aligned_cols=171 Identities=19% Similarity=0.151 Sum_probs=143.0
Q ss_pred CCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCc-EEEEEcCCC
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALR-NICIFGGTP 81 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~-~~~~~gg~~ 81 (233)
+.++.+.++++.++||+|||++|+.++... +.++||+||+++|+.||.+.+.+| +++ +..+.|+.+
T Consensus 103 ~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~--~~~~v~~~~g~~~ 169 (472)
T 2fwr_A 103 ERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF--GEEYVGEFSGRIK 169 (472)
T ss_dssp HHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG--CGGGEEEBSSSCB
T ss_pred HHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC--CCcceEEECCCcC
Confidence 345677889999999999999999987753 357999999999999999999996 677 888888888
Q ss_pred CCCeeEEe--------------------------------------------------ccc-------------------
Q psy14082 82 KGPQDCLP--------------------------------------------------LHR------------------- 92 (233)
Q Consensus 82 ~~~~~lv~--------------------------------------------------l~r------------------- 92 (233)
...+++|+ ..|
T Consensus 170 ~~~~Ivv~T~~~l~~~~~~~~~~~~liIvDEaH~~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~ 249 (472)
T 2fwr_A 170 ELKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLTATFEREDGRHEILKEVVGGKVFEL 249 (472)
T ss_dssp CCCSEEEEEHHHHHHTHHHHTTTCSEEEEETGGGTTSTTTHHHHHTCCCSEEEEEESCCCCTTSGGGSHHHHTCCEEEEC
T ss_pred CcCCEEEEEcHHHHHHHHHhcCCCCEEEEECCcCCCChHHHHHHHhcCCCeEEEEecCccCCCCHHHHHHHHhCCeEeec
Confidence 77778777 000
Q ss_pred -hh-----------------------------------------------------------------------------
Q psy14082 93 -FV----------------------------------------------------------------------------- 94 (233)
Q Consensus 93 -~~----------------------------------------------------------------------------- 94 (233)
..
T Consensus 250 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (472)
T 2fwr_A 250 FPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRI 329 (472)
T ss_dssp CHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHH
T ss_pred CHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 00
Q ss_pred --------hhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccC
Q psy14082 95 --------FNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVA 166 (233)
Q Consensus 95 --------~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~ 166 (233)
..+.+.+....+.++||||++++.++.+++.|. +..+||+++..+|.+++++|++|+.+|||||+++
T Consensus 330 ~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~ 404 (472)
T 2fwr_A 330 AFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVL 404 (472)
T ss_dssp HHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCC
T ss_pred hhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCch
Confidence 001112344567899999999999999999873 5679999999999999999999999999999999
Q ss_pred cCCcCCCCccEEEEecCCCCccccc
Q psy14082 167 ARGLDVEDVNTVNIGSLQLSANHNI 191 (233)
Q Consensus 167 ~~Gldi~~v~~VI~~d~P~~~~~~i 191 (233)
++|+|+|++++||+||+|+++..|+
T Consensus 405 ~~Gldlp~~~~Vi~~~~~~s~~~~~ 429 (472)
T 2fwr_A 405 DEGIDVPDANVGVIMSGSGSAREYI 429 (472)
T ss_dssp CSSSCSCCBSEEEEECCSSCCHHHH
T ss_pred hcCcccccCcEEEEECCCCCHHHHH
Confidence 9999999999999999999997555
No 43
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.93 E-value=2.1e-26 Score=220.69 Aligned_cols=173 Identities=17% Similarity=0.119 Sum_probs=140.1
Q ss_pred CC--ceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhc--CCcEEEEEcCCCC-
Q psy14082 8 GC--QNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSS--ALRNICIFGGTPK- 82 (233)
Q Consensus 8 g~--d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~--~~~~~~~~gg~~~- 82 (233)
|+ |++++++||+|||++|+.+++..+. .+.+++|++||++|+.|+++.+.+++. ++++..+.|..+.
T Consensus 622 g~p~d~ll~~~TGsGKT~val~aa~~~~~--------~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~ 693 (1151)
T 2eyq_A 622 PLAMDRLVCGDVGFGKTEVAMRAAFLAVD--------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAK 693 (1151)
T ss_dssp SSCCEEEEECCCCTTTHHHHHHHHHHHHT--------TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHH
T ss_pred CCcCcEEEECCCCCCHHHHHHHHHHHHHH--------hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHH
Confidence 55 9999999999999999999887663 366999999999999999999998743 5677777765332
Q ss_pred ------------CCeeEEec----------cc------------------------------------------------
Q psy14082 83 ------------GPQDCLPL----------HR------------------------------------------------ 92 (233)
Q Consensus 83 ------------~~~~lv~l----------~r------------------------------------------------ 92 (233)
+.+++|+- ++
T Consensus 694 ~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIiDEaH~~g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~ 773 (1151)
T 2eyq_A 694 EQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 773 (1151)
T ss_dssp HHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGSCHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEEechHhcChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcC
Confidence 35566660 00
Q ss_pred ------------------hhh------hchHH-HhcCCCCeEEEEecchhHHHHHHHHHhhC--CCeeEEEeCCCCHHHH
Q psy14082 93 ------------------FVF------NCQYE-MAKNPAFKVIVFVETKKKVEDITRALRRE--RHSAICIHGDKTQQDR 145 (233)
Q Consensus 93 ------------------~~~------~~~~~-~~~~~~~k~iIf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r 145 (233)
++. +.... .....+++++|||+++++++.+++.|++. +.++..+||+|++++|
T Consensus 774 ~~~~~i~~~~~~r~~i~~~~~~~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR 853 (1151)
T 2eyq_A 774 RDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 853 (1151)
T ss_dssp SEEEECCCCCCBCBCEEEEEEECCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHH
T ss_pred CCceEEecCCCCccccEEEEecCCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHH
Confidence 000 00001 12235789999999999999999999887 7899999999999999
Q ss_pred HHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCC-CCcc
Q psy14082 146 DYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQ-LSAN 188 (233)
Q Consensus 146 ~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P-~~~~ 188 (233)
.+++++|++|+.+|||||+++++|+|+|++++||+++.+ .+..
T Consensus 854 ~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~ 897 (1151)
T 2eyq_A 854 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 897 (1151)
T ss_dssp HHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHH
T ss_pred HHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHH
Confidence 999999999999999999999999999999999999884 4544
No 44
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.93 E-value=4e-26 Score=209.94 Aligned_cols=180 Identities=18% Similarity=0.135 Sum_probs=144.3
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh-hcCCcEEEEEcCC
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF-SSALRNICIFGGT 80 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~-~~~~~~~~~~gg~ 80 (233)
+|.+..|+++++++|||||||++|.+|+++.+.. +.+++|++|+|+|+.|+++.++.+ ..++++..++|+.
T Consensus 34 i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~ 105 (702)
T 2p6r_A 34 VEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDY 105 (702)
T ss_dssp HHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSC
T ss_pred HHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 3446789999999999999999999999988753 568999999999999999999766 3378999999986
Q ss_pred CC------CCeeEEe---------------cc-----------------c------------------------------
Q psy14082 81 PK------GPQDCLP---------------LH-----------------R------------------------------ 92 (233)
Q Consensus 81 ~~------~~~~lv~---------------l~-----------------r------------------------------ 92 (233)
.. +.+++|+ ++ |
T Consensus 106 ~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n~ 185 (702)
T 2p6r_A 106 ESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNV 185 (702)
T ss_dssp BCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTTH
T ss_pred CcchhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCCH
Confidence 54 3455665 00 0
Q ss_pred --------------------------------hh-------------hhchHHHhcCCCCeEEEEecchhHHHHHHHHHh
Q psy14082 93 --------------------------------FV-------------FNCQYEMAKNPAFKVIVFVETKKKVEDITRALR 127 (233)
Q Consensus 93 --------------------------------~~-------------~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~ 127 (233)
+. ..+.+. ...++++||||++++.++.++..|.
T Consensus 186 ~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~LVF~~s~~~~~~~a~~L~ 263 (702)
T 2p6r_A 186 TEIAEWLDADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEEC--VAENGGVLVFESTRRGAEKTAVKLS 263 (702)
T ss_dssp HHHHHHTTCEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHH--HHTTCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHH--HhcCCCEEEEcCCHHHHHHHHHHHH
Confidence 00 000001 1256899999999999999999987
Q ss_pred hC------------------------------CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccE
Q psy14082 128 RE------------------------------RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNT 177 (233)
Q Consensus 128 ~~------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~ 177 (233)
+. +..+..+||+|+.++|..+.+.|++|+.+|||||+.+++|+|+|++++
T Consensus 264 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~ 343 (702)
T 2p6r_A 264 AITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRV 343 (702)
T ss_dssp HHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEE
T ss_pred HHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEE
Confidence 53 135778999999999999999999999999999999999999999999
Q ss_pred EEE----ec---CCCCccccc
Q psy14082 178 VNI----GS---LQLSANHNI 191 (233)
Q Consensus 178 VI~----~d---~P~~~~~~i 191 (233)
||+ || .|.|...|+
T Consensus 344 VI~~~~~yd~~~~~~s~~~~~ 364 (702)
T 2p6r_A 344 IVRSLYRFDGYSKRIKVSEYK 364 (702)
T ss_dssp EECCSEEESSSEEECCHHHHH
T ss_pred EEcCceeeCCCCCcCCHHHHH
Confidence 999 77 677766444
No 45
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.93 E-value=5.3e-26 Score=207.37 Aligned_cols=97 Identities=14% Similarity=0.051 Sum_probs=85.5
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCC----------
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVED---------- 174 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~---------- 174 (233)
.+.++||||+|++.++.++..|.+.|+++.++||++.+.++..+.++|+.| .|+||||+++||+|++.
T Consensus 440 ~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~ 517 (853)
T 2fsf_A 440 KGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAA 517 (853)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHH
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhh
Confidence 567899999999999999999999999999999999988888888889888 69999999999999987
Q ss_pred ----------------------c-----cEEEEecCCCCccccc------------ceeeEEeecchH
Q psy14082 175 ----------------------V-----NTVNIGSLQLSANHNI------------SQVIEVVQDYEK 203 (233)
Q Consensus 175 ----------------------v-----~~VI~~d~P~~~~~~i------------~~~~~~~~~~~~ 203 (233)
| .+||+||+|.|...|+ |.+..|++..+.
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 518 LENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp CSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred cccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 4 6999999999987555 456668876553
No 46
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.93 E-value=3e-26 Score=216.82 Aligned_cols=81 Identities=14% Similarity=-0.014 Sum_probs=67.1
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGT 80 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~ 80 (233)
|||.+++|+|+++.+|||||||++|++|+...+. .+.++||++|+++|+.|+++.+.+++.++++..++|+.
T Consensus 47 aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~--------~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~ 118 (997)
T 4a4z_A 47 AVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR--------NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDV 118 (997)
T ss_dssp HHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH--------TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSC
T ss_pred HHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh--------cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 3566788999999999999999999999887653 36789999999999999999999987788999999987
Q ss_pred CCC--CeeEEe
Q psy14082 81 PKG--PQDCLP 89 (233)
Q Consensus 81 ~~~--~~~lv~ 89 (233)
+.+ .+++|+
T Consensus 119 ~~~~~~~IlV~ 129 (997)
T 4a4z_A 119 QINPDANCLIM 129 (997)
T ss_dssp EECTTSSEEEE
T ss_pred ccCCCCCEEEE
Confidence 543 445555
No 47
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.92 E-value=4.3e-25 Score=200.89 Aligned_cols=163 Identities=13% Similarity=0.066 Sum_probs=128.4
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCCC-
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPKG- 83 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~~- 83 (233)
.+.|+|++++||||||||+ ++++.+... ..++|++|||+||.|+++.+.+. ++++..++|+...-
T Consensus 152 ~l~rk~vlv~apTGSGKT~----~al~~l~~~--------~~gl~l~PtR~LA~Qi~~~l~~~--g~~v~lltG~~~~iv 217 (677)
T 3rc3_A 152 AMQRKIIFHSGPTNSGKTY----HAIQKYFSA--------KSGVYCGPLKLLAHEIFEKSNAA--GVPCDLVTGEERVTV 217 (677)
T ss_dssp TSCCEEEEEECCTTSSHHH----HHHHHHHHS--------SSEEEEESSHHHHHHHHHHHHHT--TCCEEEECSSCEECC
T ss_pred hcCCCEEEEEcCCCCCHHH----HHHHHHHhc--------CCeEEEeCHHHHHHHHHHHHHhc--CCcEEEEECCeeEEe
Confidence 3678999999999999998 455555442 23599999999999999999987 77888888885431
Q ss_pred ------CeeEEe------------------ccc-----------------------------hhhhchH-----------
Q psy14082 84 ------PQDCLP------------------LHR-----------------------------FVFNCQY----------- 99 (233)
Q Consensus 84 ------~~~lv~------------------l~r-----------------------------~~~~~~~----------- 99 (233)
.+++++ .++ .......
T Consensus 218 ~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~~v 297 (677)
T 3rc3_A 218 QPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEV 297 (677)
T ss_dssp STTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCEEE
T ss_pred cCCCcccceeEecHhHhhhcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCceEE
Confidence 222222 000 0000000
Q ss_pred -----------------HHhcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhC--CCCCEE
Q psy14082 100 -----------------EMAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQ--GKAPIL 160 (233)
Q Consensus 100 -----------------~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~iL 160 (233)
.+.. .....+|||++++.++.+++.|.+.++.+..+||+|++++|.++++.|++ |..+||
T Consensus 298 ~~~~r~~~l~~~~~~l~~l~~-~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VL 376 (677)
T 3rc3_A 298 RDYKRLTPISVLDHALESLDN-LRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKIL 376 (677)
T ss_dssp EECCCSSCEEECSSCCCSGGG-CCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEE
T ss_pred EEeeecchHHHHHHHHHHHHh-cCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEE
Confidence 1111 23455899999999999999999999999999999999999999999999 889999
Q ss_pred EecccCcCCcCCCCccEEEEecC
Q psy14082 161 VATDVAARGLDVEDVNTVNIGSL 183 (233)
Q Consensus 161 v~T~~~~~Gldi~~v~~VI~~d~ 183 (233)
|||+++++|+|+ ++++||++|+
T Consensus 377 VATdi~e~GlDi-~v~~VI~~~~ 398 (677)
T 3rc3_A 377 VATDAIGMGLNL-SIRRIIFYSL 398 (677)
T ss_dssp EECGGGGSSCCC-CBSEEEESCS
T ss_pred EeCcHHHCCcCc-CccEEEECCc
Confidence 999999999999 9999999999
No 48
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.92 E-value=4.7e-25 Score=201.63 Aligned_cols=98 Identities=16% Similarity=0.106 Sum_probs=85.3
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCc---------
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDV--------- 175 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v--------- 175 (233)
.+.++||||+|++.++.++..|.+.|+++.++||++.+.++..+.++|+.| .|+||||+++||+|++.+
T Consensus 459 ~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~ 536 (922)
T 1nkt_A 459 KGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQ 536 (922)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHH
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHH
Confidence 456899999999999999999999999999999999888887777888877 799999999999999975
Q ss_pred -------------------------------------------cEEEEecCCCCccccc------------ceeeEEeec
Q psy14082 176 -------------------------------------------NTVNIGSLQLSANHNI------------SQVIEVVQD 200 (233)
Q Consensus 176 -------------------------------------------~~VI~~d~P~~~~~~i------------~~~~~~~~~ 200 (233)
.+||+||+|.|...|+ |.+..|++.
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSl 616 (922)
T 1nkt_A 537 RLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSL 616 (922)
T ss_dssp HHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEET
T ss_pred HHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEech
Confidence 5999999999987555 566778886
Q ss_pred chHH
Q psy14082 201 YEKE 204 (233)
Q Consensus 201 ~~~~ 204 (233)
.++.
T Consensus 617 eD~l 620 (922)
T 1nkt_A 617 GDEL 620 (922)
T ss_dssp TSHH
T ss_pred hHHH
Confidence 5543
No 49
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.91 E-value=4.6e-24 Score=210.19 Aligned_cols=175 Identities=18% Similarity=0.135 Sum_probs=139.1
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCC---CCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEcCC
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEP---VKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFGGT 80 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~---~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~gg~ 80 (233)
.++.+++++||||||||++|.+|+++.+.+... .....+.++||++|+|+||.|+++.+.+. ..++++..++|+.
T Consensus 93 ~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~ 172 (1724)
T 4f92_B 93 ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDH 172 (1724)
T ss_dssp TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSC
T ss_pred cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCC
Confidence 357889999999999999999999999986432 22245789999999999999999999886 3478999999997
Q ss_pred CCC------CeeEEe--------cc-------------------------c-----------------------------
Q psy14082 81 PKG------PQDCLP--------LH-------------------------R----------------------------- 92 (233)
Q Consensus 81 ~~~------~~~lv~--------l~-------------------------r----------------------------- 92 (233)
+.+ .+++|+ ++ |
T Consensus 173 ~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSA 252 (1724)
T 4f92_B 173 QLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSA 252 (1724)
T ss_dssp SSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEEC
T ss_pred CCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEec
Confidence 653 456777 00 0
Q ss_pred ----------hh----------------------------------------hhchH-HHhcCCCCeEEEEecchhHHHH
Q psy14082 93 ----------FV----------------------------------------FNCQY-EMAKNPAFKVIVFVETKKKVED 121 (233)
Q Consensus 93 ----------~~----------------------------------------~~~~~-~~~~~~~~k~iIf~~~~~~~~~ 121 (233)
++ ..+.+ ......++++||||++++.++.
T Consensus 253 Tl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~ 332 (1724)
T 4f92_B 253 TLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGK 332 (1724)
T ss_dssp SCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHH
T ss_pred ccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHH
Confidence 00 00000 1122356789999999999999
Q ss_pred HHHHHhhC-------------------------------------CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc
Q psy14082 122 ITRALRRE-------------------------------------RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD 164 (233)
Q Consensus 122 l~~~L~~~-------------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~ 164 (233)
++..|.+. ...+.++||+|++++|..+.+.|++|.++|||||+
T Consensus 333 ~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTs 412 (1724)
T 4f92_B 333 TARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTA 412 (1724)
T ss_dssp HHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECH
T ss_pred HHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcc
Confidence 88887531 12478899999999999999999999999999999
Q ss_pred cCcCCcCCCCccEEEE
Q psy14082 165 VAARGLDVEDVNTVNI 180 (233)
Q Consensus 165 ~~~~Gldi~~v~~VI~ 180 (233)
.+++|+|+|++++||.
T Consensus 413 TLa~GVNlPa~~vVI~ 428 (1724)
T 4f92_B 413 TLAWGVNLPAHTVIIK 428 (1724)
T ss_dssp HHHHHSCCCBSEEEEE
T ss_pred hhHhhCCCCCceEEEe
Confidence 9999999999999995
No 50
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.91 E-value=5.7e-24 Score=209.52 Aligned_cols=168 Identities=15% Similarity=0.116 Sum_probs=134.5
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh-h--cCCcEEEEEcCCCC-
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF-S--SALRNICIFGGTPK- 82 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~-~--~~~~~~~~~gg~~~- 82 (233)
.+.+++++||||||||++|.+|+++.+.+. ++.++||++|+|+||.|.++.+.+. . .++++..++|+...
T Consensus 941 ~~~nvlv~APTGSGKTliaelail~~l~~~------~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~ 1014 (1724)
T 4f92_B 941 SDDNVFVGAPTGSGKTICAEFAILRMLLQS------SEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTD 1014 (1724)
T ss_dssp CCSCEEEECCTTSCCHHHHHHHHHHHHHHC------TTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHH
T ss_pred CCCcEEEEeCCCCCchHHHHHHHHHHHHhC------CCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcc
Confidence 467799999999999999999999999764 4668999999999999999999875 2 46789999998653
Q ss_pred -----CCeeEEe--------ccc-----------------------------------hh--------------------
Q psy14082 83 -----GPQDCLP--------LHR-----------------------------------FV-------------------- 94 (233)
Q Consensus 83 -----~~~~lv~--------l~r-----------------------------------~~-------------------- 94 (233)
+.+++|+ +++ +.
T Consensus 1015 ~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~ 1094 (1724)
T 4f92_B 1015 LKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLS 1094 (1724)
T ss_dssp HHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBT
T ss_pred hhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCC
Confidence 3456666 000 00
Q ss_pred ---------------------------------------------hhch----HHHhcCCCCeEEEEecchhHHHHHHHH
Q psy14082 95 ---------------------------------------------FNCQ----YEMAKNPAFKVIVFVETKKKVEDITRA 125 (233)
Q Consensus 95 ---------------------------------------------~~~~----~~~~~~~~~k~iIf~~~~~~~~~l~~~ 125 (233)
.+.. .......++++||||++++.++.++..
T Consensus 1095 N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~ 1174 (1724)
T 4f92_B 1095 NAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAID 1174 (1724)
T ss_dssp THHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHH
Confidence 0000 012345678999999999999998877
Q ss_pred HhhC----------------------------------CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcC
Q psy14082 126 LRRE----------------------------------RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLD 171 (233)
Q Consensus 126 L~~~----------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gld 171 (233)
|... ...+.++||+|++.+|..+.+.|++|.++|||||+.+++|+|
T Consensus 1175 L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVn 1254 (1724)
T 4f92_B 1175 ILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMN 1254 (1724)
T ss_dssp HHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCC
T ss_pred HHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCC
Confidence 7421 124788999999999999999999999999999999999999
Q ss_pred CCCccEEEE
Q psy14082 172 VEDVNTVNI 180 (233)
Q Consensus 172 i~~v~~VI~ 180 (233)
+|+..+||.
T Consensus 1255 lPa~~VVI~ 1263 (1724)
T 4f92_B 1255 VAAHLVIIM 1263 (1724)
T ss_dssp CCBSEEEEE
T ss_pred CCccEEEEe
Confidence 999999983
No 51
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.90 E-value=9.4e-24 Score=190.60 Aligned_cols=95 Identities=16% Similarity=0.221 Sum_probs=81.0
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCC--------eeEEEeCCCCHHHHHHHHHHhhCCCCC---EEEecccCcCCcCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERH--------SAICIHGDKTQQDRDYVLNDFRQGKAP---ILVATDVAARGLDV 172 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~--------~~~~~~~~~~~~~r~~~~~~f~~g~~~---iLv~T~~~~~Gldi 172 (233)
...+|+||||+++++++.+++.|.+.+. .+..+||+++. +|.+++++|++|+.+ |||||+++++|+|+
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDi 515 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDA 515 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccc
Confidence 4568999999999999999999987543 26788998764 799999999998866 89999999999999
Q ss_pred CCccEEEEecCCCCccccc---ceeeEEee
Q psy14082 173 EDVNTVNIGSLQLSANHNI---SQVIEVVQ 199 (233)
Q Consensus 173 ~~v~~VI~~d~P~~~~~~i---~~~~~~~~ 199 (233)
|++++||++++|.|...|+ ||+.+...
T Consensus 516 p~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 516 PTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred hheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 9999999999999998544 66666553
No 52
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.89 E-value=1.9e-22 Score=153.18 Aligned_cols=120 Identities=33% Similarity=0.458 Sum_probs=105.9
Q ss_pred HhcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEE
Q psy14082 101 MAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNI 180 (233)
Q Consensus 101 ~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~ 180 (233)
+......++||||++++.++.+++.|.+.|+.+..+||+|++.+|..++++|++|+.++||||+++++|+|+|++++||+
T Consensus 30 l~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~ 109 (163)
T 2hjv_A 30 LMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVIN 109 (163)
T ss_dssp HHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE
T ss_pred HHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEE
Confidence 33456679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCccccc------------ceeeEEeecchHHHHHHHHHHhhcCcccccc
Q psy14082 181 GSLQLSANHNI------------SQVIEVVQDYEKEKRLFSLIRELGKYTLITQ 222 (233)
Q Consensus 181 ~d~P~~~~~~i------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (233)
||+|+++..|+ |.++.++.+.+ ...++.+++..+.+++..
T Consensus 110 ~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ 161 (163)
T 2hjv_A 110 YDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFE--KRFLADIEEYIGFEIQKI 161 (163)
T ss_dssp SSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGG--HHHHHHHHHHHTSCCEEC
T ss_pred eCCCCCHHHHHHhccccCcCCCCceEEEEecHHH--HHHHHHHHHHHCCCcCcc
Confidence 99999998665 46777888654 778888888776666543
No 53
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.88 E-value=2.1e-23 Score=192.97 Aligned_cols=81 Identities=14% Similarity=0.253 Sum_probs=76.1
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhh-----------CCCeeEEEeCCCCHHHHHHHHHHhh-----CCCCCEEEecccC
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRR-----------ERHSAICIHGDKTQQDRDYVLNDFR-----QGKAPILVATDVA 166 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~-----~g~~~iLv~T~~~ 166 (233)
....+++||||++++.++.++..|.+ .++.+..+||+|++++|..+++.|+ +|..+|||||+++
T Consensus 300 ~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~ia 379 (773)
T 2xau_A 300 TEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIA 379 (773)
T ss_dssp HSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHH
T ss_pred hcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHH
Confidence 34678999999999999999999975 5788999999999999999999999 9999999999999
Q ss_pred cCCcCCCCccEEEEecC
Q psy14082 167 ARGLDVEDVNTVNIGSL 183 (233)
Q Consensus 167 ~~Gldi~~v~~VI~~d~ 183 (233)
++|+|+|++++||++|+
T Consensus 380 e~GidIp~v~~VId~g~ 396 (773)
T 2xau_A 380 ETSLTIDGIVYVVDPGF 396 (773)
T ss_dssp HHTCCCTTEEEEEECSE
T ss_pred HhCcCcCCeEEEEeCCC
Confidence 99999999999999888
No 54
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.88 E-value=6.2e-22 Score=151.73 Aligned_cols=123 Identities=20% Similarity=0.294 Sum_probs=105.9
Q ss_pred HHhcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEE
Q psy14082 100 EMAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVN 179 (233)
Q Consensus 100 ~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI 179 (233)
++......++||||++++.++.++..|.+.|+.+..+||+|++.+|..++++|++|+.++||||+++++|+|+|++++||
T Consensus 25 ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi 104 (172)
T 1t5i_A 25 LLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF 104 (172)
T ss_dssp HHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEE
T ss_pred HHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEE
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCccccc------------ceeeEEeecchHHHHHHHHHHhhcCccccccc
Q psy14082 180 IGSLQLSANHNI------------SQVIEVVQDYEKEKRLFSLIRELGKYTLITQE 223 (233)
Q Consensus 180 ~~d~P~~~~~~i------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 223 (233)
+||+|++...|+ |.++.++++. ++...++.+++..+.+++..+
T Consensus 105 ~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 159 (172)
T 1t5i_A 105 NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE-NDAKILNDVQDRFEVNISELP 159 (172)
T ss_dssp ESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSH-HHHHHHHHHHHHHCCCEEECC
T ss_pred EECCCCCHHHHHHHhcccccCCCCcEEEEEEcCh-hHHHHHHHHHHHHhcchhhCC
Confidence 999999998666 4577777753 345677777776666554443
No 55
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.88 E-value=1.1e-21 Score=185.77 Aligned_cols=110 Identities=15% Similarity=0.204 Sum_probs=94.3
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhh-CCCeeEEEeCCCCHHHHHHHHHHhhCCC--CCEEEecccCcCCcCCCCccEEEE
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRR-ERHSAICIHGDKTQQDRDYVLNDFRQGK--APILVATDVAARGLDVEDVNTVNI 180 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~iLv~T~~~~~Gldi~~v~~VI~ 180 (233)
..+.++||||+++..++.++..|.+ .|+++..+||+|++.+|..++++|++|+ .+|||||+++++|+|+|++++||+
T Consensus 501 ~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~ 580 (968)
T 3dmq_A 501 HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVM 580 (968)
T ss_dssp TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEEC
T ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEE
Confidence 4578999999999999999999985 6999999999999999999999999998 999999999999999999999999
Q ss_pred ecCCCCccccc---ce-----------eeEEeecchHHHHHHHHHHh
Q psy14082 181 GSLQLSANHNI---SQ-----------VIEVVQDYEKEKRLFSLIRE 213 (233)
Q Consensus 181 ~d~P~~~~~~i---~~-----------~~~~~~~~~~~~~~~~~i~~ 213 (233)
||+|+++..|+ || ++.++.+...+.++++.+.+
T Consensus 581 ~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~ 627 (968)
T 3dmq_A 581 FDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHE 627 (968)
T ss_dssp SSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHh
Confidence 99999997555 22 33444554555666666654
No 56
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.88 E-value=2.2e-21 Score=147.62 Aligned_cols=122 Identities=26% Similarity=0.410 Sum_probs=105.4
Q ss_pred HHHhcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEE
Q psy14082 99 YEMAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTV 178 (233)
Q Consensus 99 ~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~V 178 (233)
+.+......++||||++++.++.++..|.+.++.+..+||+|++.+|..+++.|++|+.++||||+++++|+|+|++++|
T Consensus 23 ~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~V 102 (165)
T 1fuk_A 23 DLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLV 102 (165)
T ss_dssp HHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEE
T ss_pred HHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEE
Confidence 34445577899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCccccc------------ceeeEEeecchHHHHHHHHHHhhcCcccccc
Q psy14082 179 NIGSLQLSANHNI------------SQVIEVVQDYEKEKRLFSLIRELGKYTLITQ 222 (233)
Q Consensus 179 I~~d~P~~~~~~i------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (233)
|+||+|.+...|+ |.++.++++.+ ...+..+++..+.+++..
T Consensus 103 i~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 156 (165)
T 1fuk_A 103 INYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED--VGAMRELEKFYSTQIEEL 156 (165)
T ss_dssp EESSCCSSGGGGGGSSCSCC-----CEEEEEEETTT--HHHHHHHHHHSSCCCEEC
T ss_pred EEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchH--HHHHHHHHHHHccCcccc
Confidence 9999999998666 35566777544 666777877766655443
No 57
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.87 E-value=4.8e-21 Score=169.49 Aligned_cols=109 Identities=14% Similarity=0.197 Sum_probs=90.7
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhC-CCeeEEEeCCCCHHHHHHHHHHhhCC-CCC-EEEecccCcCCcCCCCccEEEEe
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRE-RHSAICIHGDKTQQDRDYVLNDFRQG-KAP-ILVATDVAARGLDVEDVNTVNIG 181 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-iLv~T~~~~~Gldi~~v~~VI~~ 181 (233)
.+.++||||+++..++.+...|.+. |..+..+||+|+.++|.+++++|+++ ..+ +|++|+++++|+|++++++||+|
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~ 419 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHF 419 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEES
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEe
Confidence 5779999999999999999999875 99999999999999999999999998 455 78999999999999999999999
Q ss_pred cCCCCccccc---c-----------eeeEEeecchHHHHHHHHHHh
Q psy14082 182 SLQLSANHNI---S-----------QVIEVVQDYEKEKRLFSLIRE 213 (233)
Q Consensus 182 d~P~~~~~~i---~-----------~~~~~~~~~~~~~~~~~~i~~ 213 (233)
|+|+|+..++ | .+.+++.+..-++++++.+++
T Consensus 420 d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~ 465 (500)
T 1z63_A 420 DRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAF 465 (500)
T ss_dssp SCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTT
T ss_pred CCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHH
Confidence 9999997554 2 346677665555677776655
No 58
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.87 E-value=1.6e-21 Score=154.41 Aligned_cols=123 Identities=33% Similarity=0.397 Sum_probs=106.3
Q ss_pred chHHHhcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCcc
Q psy14082 97 CQYEMAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVN 176 (233)
Q Consensus 97 ~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~ 176 (233)
+.+.+....+.++||||++++.++.++..|.+.|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 22 l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~ 101 (212)
T 3eaq_A 22 LSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVD 101 (212)
T ss_dssp HHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBS
T ss_pred HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCc
Confidence 33344455678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCccccc------------ceeeEEeecchHHHHHHHHHHhhcCccccc
Q psy14082 177 TVNIGSLQLSANHNI------------SQVIEVVQDYEKEKRLFSLIRELGKYTLIT 221 (233)
Q Consensus 177 ~VI~~d~P~~~~~~i------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 221 (233)
+||+||+|.+...|+ |.++.++++.+ ...++.+++..+..+..
T Consensus 102 ~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~--~~~~~~i~~~~~~~~~~ 156 (212)
T 3eaq_A 102 LVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRE--RRDVEALERAVGRRFKR 156 (212)
T ss_dssp EEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGG--HHHHHHHHHHHSSCCEE
T ss_pred EEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhH--HHHHHHHHHHhcCcCee
Confidence 999999999998666 46677887654 77777888766554443
No 59
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=2.6e-21 Score=148.56 Aligned_cols=121 Identities=21% Similarity=0.302 Sum_probs=102.5
Q ss_pred HHhcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEE
Q psy14082 100 EMAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVN 179 (233)
Q Consensus 100 ~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI 179 (233)
.+......++||||++++.++.++..|.+.|+.+..+||+|++.+|..+++.|++|+.++||||+++++|+|+|++++||
T Consensus 28 ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi 107 (175)
T 2rb4_A 28 IYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVV 107 (175)
T ss_dssp HHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEE
T ss_pred HHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEE
Confidence 33445678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCC------CCccccc------------ceeeEEeecchHHHHHHHHHHhhcCcccccc
Q psy14082 180 IGSLQ------LSANHNI------------SQVIEVVQDYEKEKRLFSLIRELGKYTLITQ 222 (233)
Q Consensus 180 ~~d~P------~~~~~~i------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (233)
+||+| .+...|+ |.++.++++.+ ...+..+++..+..++..
T Consensus 108 ~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ 166 (175)
T 2rb4_A 108 NFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDE--LPSLMKIQDHFNSSIKQL 166 (175)
T ss_dssp ESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGG--HHHHHHHHHHHTCCCEEE
T ss_pred EeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccch--HHHHHHHHHHhcCccccc
Confidence 99999 7776555 34566777544 666777777655554433
No 60
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.87 E-value=4.4e-21 Score=172.53 Aligned_cols=98 Identities=15% Similarity=0.147 Sum_probs=83.0
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCC--------Ccc
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVE--------DVN 176 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~--------~v~ 176 (233)
.+.++||||+|++.++.++..|.+.|+++.++||++.+.++..+.++|+.| .|+||||+++||+|++ +..
T Consensus 473 ~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~Ggl 550 (822)
T 3jux_A 473 KGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGL 550 (822)
T ss_dssp HTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCC
Confidence 578999999999999999999999999999999996666666666666655 6999999999999998 667
Q ss_pred EEEEecCCCCccccc------------ceeeEEeecchHH
Q psy14082 177 TVNIGSLQLSANHNI------------SQVIEVVQDYEKE 204 (233)
Q Consensus 177 ~VI~~d~P~~~~~~i------------~~~~~~~~~~~~~ 204 (233)
+||||++|.|...|+ |.++.|++..+..
T Consensus 551 hVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l 590 (822)
T 3jux_A 551 CIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDL 590 (822)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHH
T ss_pred EEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHH
Confidence 999999999998665 4666788775533
No 61
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.84 E-value=5.4e-21 Score=148.18 Aligned_cols=124 Identities=35% Similarity=0.447 Sum_probs=87.7
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCC
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQ 184 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P 184 (233)
.+.++||||++++.++.++..|...|+.+..+||+|++.+|..++++|++|+.++||||+++++|+|+|++++||+||+|
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p 124 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLP 124 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccc------------ceeeEEeecchHHHHHHHHHHhhcCcccccccchhhHhhhc
Q psy14082 185 LSANHNI------------SQVIEVVQDYEKEKRLFSLIRELGKYTLITQESSSTLSEMV 232 (233)
Q Consensus 185 ~~~~~~i------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 232 (233)
++...|+ |.++.++++.+ ...++.+++..+.. .++.+..+.++|
T Consensus 125 ~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~--~~~~~~l~~~l~~~--~~~~~~~l~~~a 180 (185)
T 2jgn_A 125 SDIEEYVHRIGRTGRVGNLGLATSFFNERN--INITKDLLDLLVEA--KQEVPSWLENMA 180 (185)
T ss_dssp SSHHHHHHHHTTBCCTTSCEEEEEEECGGG--GGGHHHHHHHHHHT--TCCCCHHHHHHH
T ss_pred CCHHHHHHHccccCCCCCCcEEEEEEchhh--HHHHHHHHHHHHhc--cCCCCHHHHHHH
Confidence 9998666 46677887644 34444444433221 233344455443
No 62
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.84 E-value=1.7e-19 Score=164.30 Aligned_cols=109 Identities=11% Similarity=0.214 Sum_probs=95.2
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCC---EEEecccCcCCcCCCCccEEEEe
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAP---ILVATDVAARGLDVEDVNTVNIG 181 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---iLv~T~~~~~Gldi~~v~~VI~~ 181 (233)
.+.|+|||++.+..++.+...|...|+.+..+||+|+.++|.+++++|++++.. +|++|+++++|+|++++++||+|
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~ 494 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMF 494 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEEC
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEE
Confidence 468999999999999999999999999999999999999999999999998764 89999999999999999999999
Q ss_pred cCCCCcc---------cccc-----eeeEEeecchHHHHHHHHHHh
Q psy14082 182 SLQLSAN---------HNIS-----QVIEVVQDYEKEKRLFSLIRE 213 (233)
Q Consensus 182 d~P~~~~---------~~i~-----~~~~~~~~~~~~~~~~~~i~~ 213 (233)
|+|+|+. +|+| .+.+++....-++++++..++
T Consensus 495 d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~ 540 (644)
T 1z3i_X 495 DPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAH 540 (644)
T ss_dssp SCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHH
Confidence 9999986 3333 456677766556777776655
No 63
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.84 E-value=1.5e-20 Score=155.99 Aligned_cols=121 Identities=31% Similarity=0.403 Sum_probs=105.7
Q ss_pred HHHhcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEE
Q psy14082 99 YEMAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTV 178 (233)
Q Consensus 99 ~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~V 178 (233)
+.+....+.++||||++++.++.++..|.+.++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 21 ~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~V 100 (300)
T 3i32_A 21 DLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLV 100 (300)
T ss_dssp HHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEE
T ss_pred HHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEE
Confidence 34444558899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCccccc------------ceeeEEeecchHHHHHHHHHHhhcCccccc
Q psy14082 179 NIGSLQLSANHNI------------SQVIEVVQDYEKEKRLFSLIRELGKYTLIT 221 (233)
Q Consensus 179 I~~d~P~~~~~~i------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 221 (233)
|+||+|.+...|+ |.++.++++.+ ...++.+++..+..+..
T Consensus 101 I~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e--~~~~~~ie~~~~~~~~~ 153 (300)
T 3i32_A 101 VHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRE--RRDVEALERAVGRRFKR 153 (300)
T ss_dssp EESSCCSSTTHHHHHHTCCC-----CEEEEEECSST--HHHHHHHHHHHTCCCEE
T ss_pred EEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHH--HHHHHHHHHHhCCcceE
Confidence 9999999998666 46667887655 67778888766555443
No 64
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.84 E-value=8.9e-21 Score=147.69 Aligned_cols=124 Identities=26% Similarity=0.375 Sum_probs=100.6
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCC
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQ 184 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P 184 (233)
.+.++||||++++.++.++..|.+.|+.+..+||+|++.+|..++++|++|+.+|||||+++++|+|+|++++||+||+|
T Consensus 53 ~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p 132 (191)
T 2p6n_A 53 TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMP 132 (191)
T ss_dssp SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccc------------ceeeEEeecchHHHHHHHHHHhhcCcccccccchhhHhhh
Q psy14082 185 LSANHNI------------SQVIEVVQDYEKEKRLFSLIRELGKYTLITQESSSTLSEM 231 (233)
Q Consensus 185 ~~~~~~i------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 231 (233)
.+...|+ |.++.|+++.+ +....+.+++.... ..++.|..+.++
T Consensus 133 ~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~-~~~~~~~l~~~l~~--~~~~~p~~l~~~ 188 (191)
T 2p6n_A 133 EEIENYVHRIGRTGCSGNTGIATTFINKAC-DESVLMDLKALLLE--AKQKVPPVLQVL 188 (191)
T ss_dssp SSHHHHHHHHTTSCC---CCEEEEEECTTS-CHHHHHHHHHHHHH--TTCCCCHHHHST
T ss_pred CCHHHHHHHhCccccCCCCcEEEEEEcCch-hHHHHHHHHHHHHH--ccCcCCHHHHhh
Confidence 9988666 45667787542 23444445443211 123344445554
No 65
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.2e-19 Score=167.17 Aligned_cols=111 Identities=16% Similarity=0.262 Sum_probs=96.7
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCC---EEEecccCcCCcCCCCccEEEE
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAP---ILVATDVAARGLDVEDVNTVNI 180 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---iLv~T~~~~~Gldi~~v~~VI~ 180 (233)
..+.|+|||+.....++.+...|...|+.+..+||+++..+|..++++|+++..+ +|++|+++++|+|++.+++||+
T Consensus 570 ~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~ 649 (800)
T 3mwy_W 570 KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVI 649 (800)
T ss_dssp TTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEE
T ss_pred hCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEE
Confidence 3567999999999999999999999999999999999999999999999987654 9999999999999999999999
Q ss_pred ecCCCCcc---------cccc-----eeeEEeecchHHHHHHHHHHhh
Q psy14082 181 GSLQLSAN---------HNIS-----QVIEVVQDYEKEKRLFSLIREL 214 (233)
Q Consensus 181 ~d~P~~~~---------~~i~-----~~~~~~~~~~~~~~~~~~i~~~ 214 (233)
||+|+|+. +|+| .+.+++....-++++++..++-
T Consensus 650 ~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K 697 (800)
T 3mwy_W 650 FDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKK 697 (800)
T ss_dssp SSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHH
T ss_pred ecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHH
Confidence 99999996 3333 4566777766667777777663
No 66
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.70 E-value=1.4e-21 Score=149.38 Aligned_cols=91 Identities=30% Similarity=0.471 Sum_probs=85.9
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEe
Q psy14082 102 AKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIG 181 (233)
Q Consensus 102 ~~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~ 181 (233)
....+.++||||++++.++.++..|.+.++.+..+||+|++.+|..++++|++|+.++||||+++++|+|+|++++||+|
T Consensus 26 ~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~ 105 (170)
T 2yjt_D 26 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNF 105 (170)
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccc
Q psy14082 182 SLQLSANHNIS 192 (233)
Q Consensus 182 d~P~~~~~~i~ 192 (233)
|+|++...|++
T Consensus 106 ~~p~~~~~~~q 116 (170)
T 2yjt_D 106 DMPRSGDTYLH 116 (170)
Confidence 99999987773
No 67
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.75 E-value=4.2e-18 Score=161.12 Aligned_cols=86 Identities=8% Similarity=0.086 Sum_probs=69.7
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCC------------Cee-EEEeCC----------C----------CHH--------
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRER------------HSA-ICIHGD----------K----------TQQ-------- 143 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~------------~~~-~~~~~~----------~----------~~~-------- 143 (233)
.+.++||||+++.+|..++..|.+.+ +++ .++||+ + ++.
T Consensus 536 ~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~ 615 (1038)
T 2w00_A 536 KGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAA 615 (1038)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHH
Confidence 34689999999999999999997654 455 445542 2 322
Q ss_pred ---------------------HHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCCCccccc
Q psy14082 144 ---------------------DRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNI 191 (233)
Q Consensus 144 ---------------------~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~~~~~~i 191 (233)
.|..++++|++|++++||+||++.+|+|+|.+ .++++|.|.+...++
T Consensus 616 I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~li 683 (1038)
T 2w00_A 616 IREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLM 683 (1038)
T ss_dssp HHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHH
T ss_pred HHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCcccee
Confidence 47888999999999999999999999999999 678999998876444
No 68
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.71 E-value=5.7e-17 Score=130.42 Aligned_cols=148 Identities=32% Similarity=0.485 Sum_probs=98.9
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~g 78 (233)
|||.++.|+|++++||||||||++|++|+++++...+......++++||++||++|+.|+++.++++ ..++++..++|
T Consensus 59 ~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g 138 (242)
T 3fe2_A 59 GWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYG 138 (242)
T ss_dssp HHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred HHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEEC
Confidence 3567788999999999999999999999999998765444456889999999999999999999998 45789999999
Q ss_pred CCCC---------CCeeEEe-ccchhhhchHHHhcCCCCeEEEEecchhH-----HHHHHHHHhh--CCCeeEEEeCCCC
Q psy14082 79 GTPK---------GPQDCLP-LHRFVFNCQYEMAKNPAFKVIVFVETKKK-----VEDITRALRR--ERHSAICIHGDKT 141 (233)
Q Consensus 79 g~~~---------~~~~lv~-l~r~~~~~~~~~~~~~~~k~iIf~~~~~~-----~~~l~~~L~~--~~~~~~~~~~~~~ 141 (233)
|.+. ..+++|+ ..|+.+...........-+.+|+-+--.. ...+...+.. .+.....+.+-++
T Consensus 139 ~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~ 218 (242)
T 3fe2_A 139 GAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 218 (242)
T ss_dssp TSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCC
T ss_pred CCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecC
Confidence 9765 3466777 34444443321112223344554332111 1112222222 2345666777777
Q ss_pred HHHHHHH
Q psy14082 142 QQDRDYV 148 (233)
Q Consensus 142 ~~~r~~~ 148 (233)
...+..+
T Consensus 219 ~~~~~~~ 225 (242)
T 3fe2_A 219 KEVRQLA 225 (242)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6654433
No 69
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.68 E-value=3.9e-17 Score=135.64 Aligned_cols=91 Identities=18% Similarity=0.135 Sum_probs=74.3
Q ss_pred CCCCCCCC--CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh---cCCcEEE
Q psy14082 1 MLPPSESG--CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS---SALRNIC 75 (233)
Q Consensus 1 aip~~~~g--~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~---~~~~~~~ 75 (233)
|||.++.| +|++++|+||||||++|++|+++++... .+++++|||+||||||.|+++.++.+. .++++..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-----~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~ 196 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAY 196 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc-----CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 46777887 9999999999999999999999998754 457899999999999999999999983 4688999
Q ss_pred EEcCCCCC------CeeEEe-ccchhhh
Q psy14082 76 IFGGTPKG------PQDCLP-LHRFVFN 96 (233)
Q Consensus 76 ~~gg~~~~------~~~lv~-l~r~~~~ 96 (233)
.+||.+.. .+++|+ -.|+.+.
T Consensus 197 ~~~~~~~~~~~~~~~~IlV~TP~~l~~~ 224 (300)
T 3fmo_B 197 AVRGNKLERGQKISEQIVIGTPGTVLDW 224 (300)
T ss_dssp ESTTCCCCTTCCCCCSEEEECHHHHHHH
T ss_pred EeCCccHhhhhcCCCCEEEECHHHHHHH
Confidence 99987643 356777 3333333
No 70
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=125.47 Aligned_cols=83 Identities=29% Similarity=0.503 Sum_probs=64.2
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCC-CCCCCCceEEEEcCcHHHHHHHHHHHHHh-hcCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEP-VKQGDGPIALVLAPTRELAQQIQTVAKEF-SSALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~-~~~~~~~~~lil~PtreL~~Q~~~~~~~~-~~~~~~~~~~g 78 (233)
|||.++.|+|+++++|||||||++|++|++.++..... .....++++||++||++|+.|+++.++++ ..++++..++|
T Consensus 50 ~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 129 (228)
T 3iuy_A 50 AWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYG 129 (228)
T ss_dssp HHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC
T ss_pred HHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEEC
Confidence 35667899999999999999999999999998875421 12246789999999999999999999998 56789999999
Q ss_pred CCCCC
Q psy14082 79 GTPKG 83 (233)
Q Consensus 79 g~~~~ 83 (233)
|.+.+
T Consensus 130 ~~~~~ 134 (228)
T 3iuy_A 130 GRNRN 134 (228)
T ss_dssp -----
T ss_pred CCChH
Confidence 87654
No 71
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.66 E-value=9.6e-16 Score=125.41 Aligned_cols=109 Identities=14% Similarity=0.197 Sum_probs=93.1
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhC-CCeeEEEeCCCCHHHHHHHHHHhhCC-CCC-EEEecccCcCCcCCCCccEEEEe
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRE-RHSAICIHGDKTQQDRDYVLNDFRQG-KAP-ILVATDVAARGLDVEDVNTVNIG 181 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-iLv~T~~~~~Gldi~~v~~VI~~ 181 (233)
.+.|+||||+++..++.+...|.+. |+.+..+||++++++|.+++++|+++ +.+ +|++|+++++|+|++++++||+|
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~ 190 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHF 190 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEEC
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEE
Confidence 6789999999999999999999885 99999999999999999999999998 677 78999999999999999999999
Q ss_pred cCCCCccccc---c-----------eeeEEeecchHHHHHHHHHHh
Q psy14082 182 SLQLSANHNI---S-----------QVIEVVQDYEKEKRLFSLIRE 213 (233)
Q Consensus 182 d~P~~~~~~i---~-----------~~~~~~~~~~~~~~~~~~i~~ 213 (233)
|+|+++..|+ | .+.+++....-++++++.+++
T Consensus 191 d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~ 236 (271)
T 1z5z_A 191 DRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAF 236 (271)
T ss_dssp SCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHH
Confidence 9999997554 2 234566655455677776655
No 72
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.64 E-value=1.6e-15 Score=122.55 Aligned_cols=153 Identities=20% Similarity=0.262 Sum_probs=98.8
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCC----CCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEE
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPV----KQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNI 74 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~----~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~ 74 (233)
|||.++.|+|+++++|||||||++|++|+++++...... ....++++||++||++|+.|+++.++++ ..++++.
T Consensus 53 ~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 132 (253)
T 1wrb_A 53 AIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSC 132 (253)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEE
T ss_pred HHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEE
Confidence 356678899999999999999999999999998754211 1234679999999999999999999998 3467888
Q ss_pred EEEcCCCC---------CCeeEEe-ccchhhhchHHHhcCCCCeEEEEecchhH-----HHHHHHHHhhC------CCee
Q psy14082 75 CIFGGTPK---------GPQDCLP-LHRFVFNCQYEMAKNPAFKVIVFVETKKK-----VEDITRALRRE------RHSA 133 (233)
Q Consensus 75 ~~~gg~~~---------~~~~lv~-l~r~~~~~~~~~~~~~~~k~iIf~~~~~~-----~~~l~~~L~~~------~~~~ 133 (233)
.++||.+. ..+++|+ ..++.+.+.........-+.+|+-+--.. ...+...+... +...
T Consensus 133 ~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~ 212 (253)
T 1wrb_A 133 VVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQT 212 (253)
T ss_dssp EECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEE
T ss_pred EEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEE
Confidence 99998764 3466777 34444333221111223345665443221 12233333321 2346
Q ss_pred EEEeCCCCHHHHHHHHHHhhC
Q psy14082 134 ICIHGDKTQQDRDYVLNDFRQ 154 (233)
Q Consensus 134 ~~~~~~~~~~~r~~~~~~f~~ 154 (233)
..+++-++.+. .+..+.|-.
T Consensus 213 l~~SAT~~~~~-~~~~~~~l~ 232 (253)
T 1wrb_A 213 LMFSATFPKEI-QKLAADFLY 232 (253)
T ss_dssp EEEESSCCHHH-HHHHHHHCS
T ss_pred EEEEEeCCHHH-HHHHHHHcC
Confidence 66777776554 344444443
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.64 E-value=4.5e-16 Score=125.22 Aligned_cols=148 Identities=15% Similarity=0.148 Sum_probs=94.1
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh--cCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS--SALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~--~~~~~~~~~g 78 (233)
|||.++.|+|++++||||||||++|++|+++++... ...++++||++||++|+.|+++.++++. .++++..+.|
T Consensus 59 ~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~ 134 (245)
T 3dkp_A 59 AIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP----ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHK 134 (245)
T ss_dssp HHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCH
T ss_pred HHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc----ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEec
Confidence 356778899999999999999999999999988643 1457799999999999999999999983 3667777776
Q ss_pred CC----------CCCCeeEEe-ccchhhhchHH--HhcCCCCeEEEEecchhHH--------HHHHHHHhh---CCCeeE
Q psy14082 79 GT----------PKGPQDCLP-LHRFVFNCQYE--MAKNPAFKVIVFVETKKKV--------EDITRALRR---ERHSAI 134 (233)
Q Consensus 79 g~----------~~~~~~lv~-l~r~~~~~~~~--~~~~~~~k~iIf~~~~~~~--------~~l~~~L~~---~~~~~~ 134 (233)
+. ..+.+++|+ ..++.+..... ......-+.+|+-+--... +.+...+.. .+....
T Consensus 135 ~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 214 (245)
T 3dkp_A 135 AAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRA 214 (245)
T ss_dssp HHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEE
T ss_pred CccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEE
Confidence 53 124467777 33333333211 0111223455554322111 122222222 345667
Q ss_pred EEeCCCCHHHHHHHHHHhh
Q psy14082 135 CIHGDKTQQDRDYVLNDFR 153 (233)
Q Consensus 135 ~~~~~~~~~~r~~~~~~f~ 153 (233)
.+.+-++.+-+ +..+.|.
T Consensus 215 ~~SAT~~~~v~-~~~~~~l 232 (245)
T 3dkp_A 215 MFSATFAYDVE-QWCKLNL 232 (245)
T ss_dssp EEESSCCHHHH-HHHHHHS
T ss_pred EEeccCCHHHH-HHHHHhC
Confidence 77777766544 3444443
No 74
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.64 E-value=2.5e-15 Score=117.49 Aligned_cols=76 Identities=26% Similarity=0.386 Sum_probs=65.8
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh---cCCcEEEEEc
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS---SALRNICIFG 78 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~---~~~~~~~~~g 78 (233)
+|.++.|+|+++.+|||||||++|++|+++++... ..++++||++||++|+.|+++.++++. +++++..++|
T Consensus 34 i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g 108 (206)
T 1vec_A 34 IPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTG 108 (206)
T ss_dssp HHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECS
T ss_pred HHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeC
Confidence 45677899999999999999999999999988643 356789999999999999999999983 2678888998
Q ss_pred CCCC
Q psy14082 79 GTPK 82 (233)
Q Consensus 79 g~~~ 82 (233)
+.+.
T Consensus 109 ~~~~ 112 (206)
T 1vec_A 109 GTNL 112 (206)
T ss_dssp SSCH
T ss_pred CccH
Confidence 8654
No 75
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.64 E-value=1.2e-15 Score=139.21 Aligned_cols=98 Identities=28% Similarity=0.325 Sum_probs=90.3
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecC-
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSL- 183 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~- 183 (233)
.+.++||||+|++.++.+++.|.+.|+++..+||+|++.+|..++++|++|+.+|||||+++++|+|+|++++||++|.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 5679999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCCccccc-----------ceeeEEeecch
Q psy14082 184 ----QLSANHNI-----------SQVIEVVQDYE 202 (233)
Q Consensus 184 ----P~~~~~~i-----------~~~~~~~~~~~ 202 (233)
|.+...|+ |.++.++++.+
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARNAEGRVIMYADKIT 557 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTSTTCEEEEECSSCC
T ss_pred cccCCCCHHHHHHHhCcccCCCCCEEEEEEeCCC
Confidence 88887666 46677887644
No 76
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.63 E-value=1e-15 Score=122.77 Aligned_cols=148 Identities=20% Similarity=0.189 Sum_probs=93.8
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh--cCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS--SALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~--~~~~~~~~~g 78 (233)
|||.++.|+|+++.+|||||||++|++|+++.+... ..++++||++||++|+.|+++.++++. .++++..++|
T Consensus 60 ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g 134 (237)
T 3bor_A 60 AIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-----FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIG 134 (237)
T ss_dssp HHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC
T ss_pred HHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----CCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEEC
Confidence 356678899999999999999999999999988643 356789999999999999999999993 3678888888
Q ss_pred CCCCC----------CeeEEe-ccchhhhchHHHhcCCCCeEEEEecchhH-----HHHHHHHHhhC--CCeeEEEeCCC
Q psy14082 79 GTPKG----------PQDCLP-LHRFVFNCQYEMAKNPAFKVIVFVETKKK-----VEDITRALRRE--RHSAICIHGDK 140 (233)
Q Consensus 79 g~~~~----------~~~lv~-l~r~~~~~~~~~~~~~~~k~iIf~~~~~~-----~~~l~~~L~~~--~~~~~~~~~~~ 140 (233)
|.+.. .+++|+ ..++.+...........-+.+|+-+--.. ...+...++.. +.....+.+-+
T Consensus 135 ~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~ 214 (237)
T 3bor_A 135 GTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATM 214 (237)
T ss_dssp -------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSC
T ss_pred CCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEec
Confidence 86642 456666 23333333221111223455665432211 11233333332 35566667767
Q ss_pred CHHHHHHHHHHhhC
Q psy14082 141 TQQDRDYVLNDFRQ 154 (233)
Q Consensus 141 ~~~~r~~~~~~f~~ 154 (233)
+.+.+ +..+.|-.
T Consensus 215 ~~~~~-~~~~~~l~ 227 (237)
T 3bor_A 215 PTDVL-EVTKKFMR 227 (237)
T ss_dssp CHHHH-HHHHHHCS
T ss_pred CHHHH-HHHHHHCC
Confidence 65543 34444543
No 77
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.63 E-value=3.8e-15 Score=120.40 Aligned_cols=148 Identities=18% Similarity=0.211 Sum_probs=97.4
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh--cCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS--SALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~--~~~~~~~~~g 78 (233)
|||.++.|+|+++.+|||||||++|++|+++.+... ..++++||++||++|+.|+++.++++. .++++..++|
T Consensus 73 ~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-----~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g 147 (249)
T 3ber_A 73 AIPLALQGRDIIGLAETGSGKTGAFALPILNALLET-----PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVG 147 (249)
T ss_dssp HHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECT
T ss_pred HHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC-----CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEEC
Confidence 356678899999999999999999999999998765 346789999999999999999999983 4788999999
Q ss_pred CCCC---------CCeeEEe-ccchhhhchHH-HhcCCCCeEEEEecchhHHH-----HHHHHHhhC--CCeeEEEeCCC
Q psy14082 79 GTPK---------GPQDCLP-LHRFVFNCQYE-MAKNPAFKVIVFVETKKKVE-----DITRALRRE--RHSAICIHGDK 140 (233)
Q Consensus 79 g~~~---------~~~~lv~-l~r~~~~~~~~-~~~~~~~k~iIf~~~~~~~~-----~l~~~L~~~--~~~~~~~~~~~ 140 (233)
|.+. +.+++|+ ..++.+.+... ......-+.+|+-+--...+ .+...+... +.....+.+-+
T Consensus 148 ~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~ 227 (249)
T 3ber_A 148 GIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATM 227 (249)
T ss_dssp TSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSC
T ss_pred CCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccC
Confidence 8763 4567777 34443333220 00112234555543221111 122222222 35666777777
Q ss_pred CHHHHHHHHHHhhC
Q psy14082 141 TQQDRDYVLNDFRQ 154 (233)
Q Consensus 141 ~~~~r~~~~~~f~~ 154 (233)
+.+.+ +..+.|-.
T Consensus 228 ~~~v~-~~~~~~l~ 240 (249)
T 3ber_A 228 TKKVQ-KLQRAALK 240 (249)
T ss_dssp CHHHH-HHHHHHCS
T ss_pred CHHHH-HHHHHHCC
Confidence 76544 34444443
No 78
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.62 E-value=1.9e-15 Score=137.96 Aligned_cols=98 Identities=23% Similarity=0.256 Sum_probs=89.6
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecC-
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSL- 183 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~- 183 (233)
.+.++||||+|++.++.+++.|.+.|+++..+||+|++.+|.+++++|++|+.+|||||+++++|+|+|++++||++|.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCCccccc-----------ceeeEEeecch
Q psy14082 184 ----QLSANHNI-----------SQVIEVVQDYE 202 (233)
Q Consensus 184 ----P~~~~~~i-----------~~~~~~~~~~~ 202 (233)
|.|...|+ |.++.++++.+
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~ 551 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARNARGEVWLYADRVS 551 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTSTTCEEEEECSSCC
T ss_pred ccCCCCCHHHHHHHHCccCcCCCCEEEEEEcCCC
Confidence 88887666 46677776543
No 79
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.62 E-value=4.3e-15 Score=118.79 Aligned_cols=87 Identities=18% Similarity=0.175 Sum_probs=70.2
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh--cCCcEEEEEcC
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS--SALRNICIFGG 79 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~--~~~~~~~~~gg 79 (233)
+|.++.|+|+++.+|||||||++|++|+++.+..... ....++++||++||++|+.|+++.++++. .++++..++||
T Consensus 56 i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~ 134 (236)
T 2pl3_A 56 IGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW-TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGG 134 (236)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC
T ss_pred HHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc-cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECC
Confidence 5667889999999999999999999999998875421 12347889999999999999999999984 35889999998
Q ss_pred CCC--------CCeeEEe
Q psy14082 80 TPK--------GPQDCLP 89 (233)
Q Consensus 80 ~~~--------~~~~lv~ 89 (233)
.+. +.+++|+
T Consensus 135 ~~~~~~~~~~~~~~iiv~ 152 (236)
T 2pl3_A 135 KDLKHEAERINNINILVC 152 (236)
T ss_dssp --CHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHhCCCCCEEEE
Confidence 765 3456666
No 80
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.61 E-value=5.2e-16 Score=123.82 Aligned_cols=76 Identities=25% Similarity=0.294 Sum_probs=66.4
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh---cCCcEEEEEc
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS---SALRNICIFG 78 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~---~~~~~~~~~g 78 (233)
+|.++.|+|+++++|||||||++|++|+++++... ..++++||++||++|+.|+++.++++. .++++..++|
T Consensus 55 i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g 129 (230)
T 2oxc_A 55 IPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE-----NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIG 129 (230)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECT
T ss_pred HHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeC
Confidence 56677899999999999999999999999988654 356799999999999999999999983 3788999999
Q ss_pred CCCC
Q psy14082 79 GTPK 82 (233)
Q Consensus 79 g~~~ 82 (233)
|.+.
T Consensus 130 ~~~~ 133 (230)
T 2oxc_A 130 GTPL 133 (230)
T ss_dssp TSCH
T ss_pred CCCH
Confidence 8763
No 81
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.61 E-value=5e-15 Score=117.34 Aligned_cols=147 Identities=22% Similarity=0.228 Sum_probs=91.5
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEcC
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFGG 79 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~gg 79 (233)
+|.++.|+|+++.+|||||||++|++|+++++... .+++++||++||++|+.|+++.++.+ ..++++..+.||
T Consensus 45 i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~ 119 (224)
T 1qde_A 45 IMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGG 119 (224)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-
T ss_pred HHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-----CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCC
Confidence 56678899999999999999999999999988654 45779999999999999999999998 346788899998
Q ss_pred CCCC--------CeeEEe-ccchhhhchHHHhcCCCCeEEEEecchhH-----HHHHHHHHhh--CCCeeEEEeCCCCHH
Q psy14082 80 TPKG--------PQDCLP-LHRFVFNCQYEMAKNPAFKVIVFVETKKK-----VEDITRALRR--ERHSAICIHGDKTQQ 143 (233)
Q Consensus 80 ~~~~--------~~~lv~-l~r~~~~~~~~~~~~~~~k~iIf~~~~~~-----~~~l~~~L~~--~~~~~~~~~~~~~~~ 143 (233)
.+.. .+++|+ ..++.+...........-..+|+-+--.. ...+...+.. .+.....+.+-++.+
T Consensus 120 ~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~ 199 (224)
T 1qde_A 120 TSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPND 199 (224)
T ss_dssp ---------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHH
T ss_pred cchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHH
Confidence 7643 355666 23333322211111122345555432111 1112222222 234566677767655
Q ss_pred HHHHHHHHhhC
Q psy14082 144 DRDYVLNDFRQ 154 (233)
Q Consensus 144 ~r~~~~~~f~~ 154 (233)
.+ +..+.|-.
T Consensus 200 ~~-~~~~~~~~ 209 (224)
T 1qde_A 200 VL-EVTTKFMR 209 (224)
T ss_dssp HH-HHHHHHCS
T ss_pred HH-HHHHHHCC
Confidence 43 44444543
No 82
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.60 E-value=1.4e-15 Score=120.41 Aligned_cols=75 Identities=27% Similarity=0.369 Sum_probs=65.1
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhc------CCcEEE
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSS------ALRNIC 75 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~------~~~~~~ 75 (233)
+|.++.|+|+++.+|||||||++|++|+++.+... ..++++||++||++|+.|+++.++++.. ++++..
T Consensus 35 i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~ 109 (219)
T 1q0u_A 35 IPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARC 109 (219)
T ss_dssp HHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEE
T ss_pred HHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----cCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEE
Confidence 45677899999999999999999999999988653 3568899999999999999999999832 678888
Q ss_pred EEcCCC
Q psy14082 76 IFGGTP 81 (233)
Q Consensus 76 ~~gg~~ 81 (233)
++||.+
T Consensus 110 ~~g~~~ 115 (219)
T 1q0u_A 110 LIGGTD 115 (219)
T ss_dssp ECCCSH
T ss_pred EeCCCC
Confidence 898864
No 83
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.60 E-value=9.7e-15 Score=114.16 Aligned_cols=149 Identities=20% Similarity=0.284 Sum_probs=96.8
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCC
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTP 81 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~ 81 (233)
+|.++.|+|+++.+|||||||++|++|+++.+.... ...+++++||++||++|+.|+++.++++...+++..++||.+
T Consensus 32 i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~--~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
T 2gxq_A 32 LPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ--ERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTG 109 (207)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC--CTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSC
T ss_pred HHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc--ccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCC
Confidence 456778999999999999999999999999887532 124578999999999999999999999977789999999876
Q ss_pred C---------CCeeEEe-ccchhhhchHHHhcCCCCeEEEEecchhH-----HHHHHHHHhhC--CCeeEEEeCCCCHHH
Q psy14082 82 K---------GPQDCLP-LHRFVFNCQYEMAKNPAFKVIVFVETKKK-----VEDITRALRRE--RHSAICIHGDKTQQD 144 (233)
Q Consensus 82 ~---------~~~~lv~-l~r~~~~~~~~~~~~~~~k~iIf~~~~~~-----~~~l~~~L~~~--~~~~~~~~~~~~~~~ 144 (233)
. ..+++|+ ..++.+...........-+.+|+-+--.. ...+...+... +.....+++-++...
T Consensus 110 ~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 189 (207)
T 2gxq_A 110 YGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWA 189 (207)
T ss_dssp SHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHH
T ss_pred hHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHH
Confidence 4 3556666 33333333321112233455665432211 11122222222 345556666665543
Q ss_pred HHHHHHHhh
Q psy14082 145 RDYVLNDFR 153 (233)
Q Consensus 145 r~~~~~~f~ 153 (233)
.+..+.|-
T Consensus 190 -~~~~~~~~ 197 (207)
T 2gxq_A 190 -KRLAERYM 197 (207)
T ss_dssp -HHHHHHHC
T ss_pred -HHHHHHHc
Confidence 34445553
No 84
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.60 E-value=4.9e-16 Score=126.53 Aligned_cols=81 Identities=26% Similarity=0.292 Sum_probs=67.8
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEc
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFG 78 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~g 78 (233)
|+|.++.|+|++++||||||||++|++|+++.+...+. ....+.++||++||++|+.|+++.++++ ..+..+..++|
T Consensus 84 ~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g 162 (262)
T 3ly5_A 84 SIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF-MPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMG 162 (262)
T ss_dssp HHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECS
T ss_pred HHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc-cccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEEC
Confidence 35667889999999999999999999999999876421 1234788999999999999999999998 34678888999
Q ss_pred CCCC
Q psy14082 79 GTPK 82 (233)
Q Consensus 79 g~~~ 82 (233)
|...
T Consensus 163 ~~~~ 166 (262)
T 3ly5_A 163 GSNR 166 (262)
T ss_dssp SSCH
T ss_pred CCCH
Confidence 8764
No 85
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.58 E-value=2.1e-15 Score=119.28 Aligned_cols=76 Identities=22% Similarity=0.312 Sum_probs=65.7
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh---cCCcEEEEEc
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS---SALRNICIFG 78 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~---~~~~~~~~~g 78 (233)
+|.++.|+|+++.+|||+|||++|++|+++.+... .+++++||++||++|+.|+++.++++. +++++..++|
T Consensus 45 i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g 119 (220)
T 1t6n_A 45 IPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFG 119 (220)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESC
T ss_pred HHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeC
Confidence 45677899999999999999999999999987543 346789999999999999999999993 3788999999
Q ss_pred CCCC
Q psy14082 79 GTPK 82 (233)
Q Consensus 79 g~~~ 82 (233)
|.+.
T Consensus 120 ~~~~ 123 (220)
T 1t6n_A 120 GLSI 123 (220)
T ss_dssp CSCH
T ss_pred CCCh
Confidence 8763
No 86
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.56 E-value=6.2e-15 Score=135.21 Aligned_cols=70 Identities=13% Similarity=-0.036 Sum_probs=60.7
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEcC
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFGG 79 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~gg 79 (233)
||.++.|+ +++++||+|||++|++|++...+ .+.+++|++||++||.|.++.+..+ +.++++.+++||
T Consensus 88 ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL--------~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg 157 (997)
T 2ipc_A 88 GAVLHEGK--IAEMKTGEGKTLVATLAVALNAL--------TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHA 157 (997)
T ss_dssp HHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT--------TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTT
T ss_pred cccccCCc--eeeccCCCchHHHHHHHHHHHHH--------hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 57788888 99999999999999999965443 2457999999999999999999999 568999999998
Q ss_pred CC
Q psy14082 80 TP 81 (233)
Q Consensus 80 ~~ 81 (233)
.+
T Consensus 158 ~~ 159 (997)
T 2ipc_A 158 ST 159 (997)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.27 E-value=8.9e-13 Score=103.34 Aligned_cols=81 Identities=16% Similarity=0.097 Sum_probs=62.3
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHH-HHHHHHHh-hcCCcEEEEEcC
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQ-IQTVAKEF-SSALRNICIFGG 79 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q-~~~~~~~~-~~~~~~~~~~gg 79 (233)
++.++.|+++++.+|||+|||++|++++.+.+..... ...+.++||++|+++|+.| +.+.+..+ ..++++..+.|+
T Consensus 42 i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~ 119 (216)
T 3b6e_A 42 AQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGD 119 (216)
T ss_dssp HHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC-
T ss_pred HHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCC
Confidence 3445678999999999999999999999987764311 1236789999999999999 88888888 336788888888
Q ss_pred CCCCC
Q psy14082 80 TPKGP 84 (233)
Q Consensus 80 ~~~~~ 84 (233)
.+...
T Consensus 120 ~~~~~ 124 (216)
T 3b6e_A 120 TQLKI 124 (216)
T ss_dssp --CCC
T ss_pred cccch
Confidence 76544
No 88
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.18 E-value=1e-11 Score=101.89 Aligned_cols=71 Identities=17% Similarity=0.093 Sum_probs=57.5
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhh--cCCcEEEEEcCCCC
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFS--SALRNICIFGGTPK 82 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~--~~~~~~~~~gg~~~ 82 (233)
++.+.+.++.++||+|||++++.++...+.. .+.++||++||++|+.|+.+.++++. ....+..+.||.+.
T Consensus 125 ~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~ 197 (282)
T 1rif_A 125 GLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASK 197 (282)
T ss_dssp HHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-------CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSS
T ss_pred HHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-------CCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcc
Confidence 4556788999999999999998887776643 23489999999999999999999983 34577888887654
No 89
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.13 E-value=4.7e-11 Score=108.12 Aligned_cols=70 Identities=13% Similarity=-0.003 Sum_probs=60.9
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEcCCC
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFGGTP 81 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~gg~~ 81 (233)
+..|+|++++||||+|||++|++|++..+... +.+++|++||++|+.|+.+.+..+ ..++++..+.|+.+
T Consensus 19 l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-------~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~~~l~gr~~ 90 (620)
T 4a15_A 19 LQKSYGVALESPTGSGKTIMALKSALQYSSER-------KLKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQGRVN 90 (620)
T ss_dssp HHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-------TCEEEEEESSHHHHHHHHHHHHHHHHHSCCCEEECCCHHH
T ss_pred HHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-------CCeEEEECCCHHHHHHHHHHHHHHhhccCeEEEEEECCCc
Confidence 35799999999999999999999999988643 568999999999999999999998 34788888887754
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.06 E-value=7.3e-11 Score=105.60 Aligned_cols=65 Identities=9% Similarity=-0.056 Sum_probs=55.9
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh--hcCCcEEEEEcCCC
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF--SSALRNICIFGGTP 81 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~--~~~~~~~~~~gg~~ 81 (233)
..|+|++++||||+|||++|++|++. .+++++|++||++|+.|+.+.+..+ ..++++..+.|+.+
T Consensus 20 ~~~~~~~~~a~TGtGKT~~~l~p~l~-----------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr~~ 86 (551)
T 3crv_A 20 RNNFLVALNAPTGSGKTLFSLLVSLE-----------VKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVGKPS 86 (551)
T ss_dssp HTTCEEEEECCTTSSHHHHHHHHHHH-----------HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECCCHHH
T ss_pred HcCCcEEEECCCCccHHHHHHHHHHh-----------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEccccc
Confidence 47899999999999999999999997 2568999999999999999999888 33677777777543
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.05 E-value=1.5e-10 Score=92.71 Aligned_cols=73 Identities=12% Similarity=-0.069 Sum_probs=59.3
Q ss_pred CCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCc-EEEEEcCCCC
Q psy14082 4 PSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALR-NICIFGGTPK 82 (233)
Q Consensus 4 ~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~-~~~~~gg~~~ 82 (233)
.++.++++++.++||+|||.+++.++... +.++||++|+++|+.|+.+.+.++ +++ +..+.|+.+.
T Consensus 104 ~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~--~~~~v~~~~g~~~~ 170 (237)
T 2fz4_A 104 RWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF--GEEYVGEFSGRIKE 170 (237)
T ss_dssp HHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG--CGGGEEEESSSCBC
T ss_pred HHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC--CCCeEEEEeCCCCC
Confidence 35567889999999999999988776542 346999999999999999999985 677 8888888776
Q ss_pred CCeeEEe
Q psy14082 83 GPQDCLP 89 (233)
Q Consensus 83 ~~~~lv~ 89 (233)
..+++|+
T Consensus 171 ~~~i~v~ 177 (237)
T 2fz4_A 171 LKPLTVS 177 (237)
T ss_dssp CCSEEEE
T ss_pred cCCEEEE
Confidence 6666555
No 92
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.91 E-value=1.4e-09 Score=97.13 Aligned_cols=61 Identities=15% Similarity=0.043 Sum_probs=50.1
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEc
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFG 78 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~g 78 (233)
+..|++++++||||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+ ++++..+.|
T Consensus 23 ~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~~~l--~~~~~~l~g 83 (540)
T 2vl7_A 23 LKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNAKLL--GLKTGFLIG 83 (540)
T ss_dssp HHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHHGGG--TCCEEEC--
T ss_pred HHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHHHhc--CCcEEEecC
Confidence 3578999999999999999999998752 468999999999999999988876 455555544
No 93
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.90 E-value=5.1e-10 Score=89.28 Aligned_cols=63 Identities=10% Similarity=-0.115 Sum_probs=52.7
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
+|.+..|+++++.|+||||||.+|.+++++....... ..+.++++++|+++|+.|+.+.+...
T Consensus 70 i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~~~~~~~ 132 (235)
T 3llm_A 70 LEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVAERVAFE 132 (235)
T ss_dssp HHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHHHHHHHH
Confidence 3456679999999999999999999999987765421 23568999999999999999999876
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.98 E-value=2.9e-06 Score=76.66 Aligned_cols=60 Identities=12% Similarity=0.012 Sum_probs=47.9
Q ss_pred CCCCCCCCceeEecCCCCCch--HHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 2 LPPSESGCQNFSKITNYLLSP--PQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT--~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
++.++.++++++++++||||| ++++++.+..+.. ..+.++++++||.++|.++.+.+...
T Consensus 158 i~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 158 AAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp HHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred HHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHHH
Confidence 344567899999999999999 6777777765532 23678999999999999998887754
No 95
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.95 E-value=7.8e-06 Score=72.82 Aligned_cols=78 Identities=17% Similarity=0.312 Sum_probs=52.0
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEE--ecccCcCCcCCCC----ccE
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILV--ATDVAARGLDVED----VNT 177 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv--~T~~~~~Gldi~~----v~~ 177 (233)
...+.++||++|...++.+++.+.. .....++.. .+|.+++++|+++. .||+ +|+.+++|+|+|+ +++
T Consensus 382 ~~~g~~lvff~S~~~~~~v~~~l~~---~~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~ 455 (540)
T 2vl7_A 382 NSSKSVLVFFPSYEMLESVRIHLSG---IPVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFES 455 (540)
T ss_dssp TCSSEEEEEESCHHHHHHHHTTCTT---SCEEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEE
T ss_pred hCCCCEEEEeCCHHHHHHHHHHhcc---CceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccE
Confidence 4567999999999999999988865 234566654 46889999999864 6777 8899999999997 899
Q ss_pred EEEecCCCCc
Q psy14082 178 VNIGSLQLSA 187 (233)
Q Consensus 178 VI~~d~P~~~ 187 (233)
||++++|...
T Consensus 456 Vii~~lPf~~ 465 (540)
T 2vl7_A 456 LVLAGLPYPN 465 (540)
T ss_dssp EEEESCCCCC
T ss_pred EEEECCCCCC
Confidence 9999999544
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.98 E-value=0.00093 Score=60.68 Aligned_cols=52 Identities=10% Similarity=-0.017 Sum_probs=41.0
Q ss_pred CCc-eeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 8 GCQ-NFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 8 g~d-~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
.++ .++++|+|||||.+ +.-++..+..+ +.++|+.+||..-++++.+.+...
T Consensus 204 ~~~~~lI~GPPGTGKT~t-i~~~I~~l~~~-------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 204 QKELAIIHGPPGTGKTTT-VVEIILQAVKQ-------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp CSSEEEEECCTTSCHHHH-HHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCceEEECCCCCCHHHH-HHHHHHHHHhC-------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 344 68999999999988 44455555543 568999999999999999988765
No 97
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.94 E-value=0.009 Score=49.38 Aligned_cols=97 Identities=3% Similarity=0.000 Sum_probs=68.2
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcC-----CCCccE
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLD-----VEDVNT 177 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gld-----i~~v~~ 177 (233)
...+.+++||++..+..+-+...+...+++..-+.|....+++ +. .++...+.+.|...+-|+| ....|.
T Consensus 122 ~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k~----~~~~~~i~Lltsag~~gin~~~~nl~~aD~ 196 (328)
T 3hgt_A 122 QEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-AA----NDFSCTVHLFSSEGINFTKYPIKSKARFDM 196 (328)
T ss_dssp TTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCCCCCSCCSE
T ss_pred HhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-hc----ccCCceEEEEECCCCCCcCcccccCCCCCE
Confidence 3477899999999999999999999999999999988554322 11 2344455555776666675 678999
Q ss_pred EEEecCCCCccc----------ccc-------eeeEEeecchHH
Q psy14082 178 VNIGSLQLSANH----------NIS-------QVIEVVQDYEKE 204 (233)
Q Consensus 178 VI~~d~P~~~~~----------~i~-------~~~~~~~~~~~~ 204 (233)
||.||..+++.. |+| .+++++...--+
T Consensus 197 VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 197 LICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp EEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred EEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 999999888763 552 567777664433
No 98
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.78 E-value=0.0013 Score=59.46 Aligned_cols=78 Identities=13% Similarity=0.206 Sum_probs=55.9
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc--cCcCCcCCCC--ccEEEE
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD--VAARGLDVED--VNTVNI 180 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~--~~~~Gldi~~--v~~VI~ 180 (233)
.++.++||+++....+.+++.++..+.+ ...+++..++..++++|+ ++.-||+++. .+.+|+|+|+ ..+||.
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~~~~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI 522 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVSFEHMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIIL 522 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCCSCCEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhcchh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEE
Confidence 3557999999999999999888732222 555677778999999999 8888999974 8999999996 668999
Q ss_pred ecCCCC
Q psy14082 181 GSLQLS 186 (233)
Q Consensus 181 ~d~P~~ 186 (233)
..+|--
T Consensus 523 ~~lPfp 528 (620)
T 4a15_A 523 AGLPFP 528 (620)
T ss_dssp SSCCCC
T ss_pred EcCCCC
Confidence 998844
No 99
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=96.59 E-value=0.0038 Score=56.85 Aligned_cols=57 Identities=18% Similarity=0.002 Sum_probs=42.7
Q ss_pred ceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEE
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIF 77 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~ 77 (233)
...+.+.||||||++++ .++..+. ..+|||+|+..+|.|+++.++.|+++-.+..+.
T Consensus 30 ~~~l~g~tgs~kt~~~a-~~~~~~~----------~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fp 86 (664)
T 1c4o_A 30 FVTLLGATGTGKTVTMA-KVIEALG----------RPALVLAPNKILAAQLAAEFRELFPENAVEYFI 86 (664)
T ss_dssp EEEEEECTTSCHHHHHH-HHHHHHT----------CCEEEEESSHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred cEEEEcCCCcHHHHHHH-HHHHHhC----------CCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcC
Confidence 45678999999998844 3444441 138999999999999999999996554444443
No 100
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.47 E-value=0.0029 Score=57.25 Aligned_cols=54 Identities=13% Similarity=0.025 Sum_probs=42.2
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
.+.-.++++|+|||||.+ +..++..+... .+.++|+++||...++++.+.+.+.
T Consensus 194 ~~~~~li~GppGTGKT~~-~~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 194 QRPLSLIQGPPGTGKTVT-SATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp TCSEEEEECCTTSCHHHH-HHHHHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCeEEECCCCCCHHHH-HHHHHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 344578999999999987 45566665532 3568999999999999999988765
No 101
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.43 E-value=0.0084 Score=55.58 Aligned_cols=75 Identities=13% Similarity=0.217 Sum_probs=62.7
Q ss_pred CCCeEEEEecchhHHHHHHHHHhh----CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc-CcCCcCCCCccEEE
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRR----ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV-AARGLDVEDVNTVN 179 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~-~~~Gldi~~v~~VI 179 (233)
.+.++++.++|+.-+.+.++.+.+ .++++..+||+++..++...++.+.+|+.+|+|+|.. +...+++.++++||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 457999999999998888877764 3789999999999999999999999999999999964 23346667777666
No 102
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=96.15 E-value=0.014 Score=49.53 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=55.9
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhh---CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRR---ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD 164 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~ 164 (233)
..+.+++|.++++.-+.+.++.+++ .++++..+||+.+..++...++.+..|+.+|+|+|+
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp 125 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFST 125 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECH
Confidence 4678999999999999999999988 588999999999999999999999999999999994
No 103
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.006 Score=56.77 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=41.7
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
+.-.++++|+|||||.+ +..++..+... ++.++|+++||...++++.+.+.+.
T Consensus 375 ~~~~lI~GppGTGKT~~-i~~~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVT-SATIVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CSEEEEECSTTSSHHHH-HHHHHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHH-HHHHHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 44579999999999977 44555555432 2567999999999999999999876
No 104
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.12 E-value=0.0095 Score=53.75 Aligned_cols=56 Identities=5% Similarity=-0.072 Sum_probs=41.8
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
+..+++.|++|||||.+ ++--+.++..... .+..++|++++|+..+.++.+.+.++
T Consensus 22 ~~~~lV~a~aGsGKT~~-l~~ri~~l~~~~~---~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRV-LVHRIAWLMSVEN---CSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp SSCEEEEECTTSCHHHH-HHHHHHHHHHTSC---CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHH-HHHHHHHHHHhCC---CChhhEEEEeccHHHHHHHHHHHHHH
Confidence 45689999999999987 4434444443211 12357999999999999999999887
No 105
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.97 E-value=0.0074 Score=56.12 Aligned_cols=53 Identities=13% Similarity=0.024 Sum_probs=42.0
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
+.-.++++|+|||||.+ +..++..+... .+.++|+++||..-+.++.+.+...
T Consensus 371 ~~~~lI~GppGTGKT~t-i~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVT-SATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SSEEEEECCTTSCHHHH-HHHHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCeEEEEcCCCCCHHHH-HHHHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 44578999999999987 55566666542 3568999999999999999888765
No 106
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.81 E-value=0.021 Score=51.92 Aligned_cols=57 Identities=16% Similarity=-0.010 Sum_probs=42.5
Q ss_pred ceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEE
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIF 77 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~ 77 (233)
...+.+.||||||++.+ .++.... ..+|||+|+.++|.|+++.++.|+++-.+..+.
T Consensus 34 ~~~l~g~~gs~k~~~~a-~~~~~~~----------~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fp 90 (661)
T 2d7d_A 34 HQTLLGATGTGKTFTVS-NLIKEVN----------KPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFV 90 (661)
T ss_dssp EEEEEECTTSCHHHHHH-HHHHHHC----------CCEEEECSSHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred cEEEECcCCcHHHHHHH-HHHHHhC----------CCEEEEECCHHHHHHHHHHHHHHcCCCcEEEcc
Confidence 45678999999998743 3444431 138999999999999999999996554555444
No 107
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=95.79 E-value=0.036 Score=49.19 Aligned_cols=77 Identities=9% Similarity=0.143 Sum_probs=56.2
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEec--ccCcCCcCCC-----Ccc
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVAT--DVAARGLDVE-----DVN 176 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T--~~~~~Gldi~-----~v~ 176 (233)
...+.++||+++....+.+++. .+..+..-..+++ +.+.++.|+..+.-||+++ ..+.+|+|+| ...
T Consensus 391 ~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~ 464 (551)
T 3crv_A 391 QAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLIS 464 (551)
T ss_dssp HCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEE
T ss_pred hCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCccee
Confidence 3556999999999999988862 3444433333455 4557778864445799998 6999999999 378
Q ss_pred EEEEecCCCC
Q psy14082 177 TVNIGSLQLS 186 (233)
Q Consensus 177 ~VI~~d~P~~ 186 (233)
+||...+|--
T Consensus 465 ~viI~~lPfp 474 (551)
T 3crv_A 465 DVVIVGIPYP 474 (551)
T ss_dssp EEEEESCCCC
T ss_pred EEEEEcCCCC
Confidence 8999998743
No 108
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=95.75 E-value=0.02 Score=55.19 Aligned_cols=75 Identities=15% Similarity=0.184 Sum_probs=63.4
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhh---CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc-----CcCCcCCCCc
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRR---ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV-----AARGLDVEDV 175 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~-----~~~Gldi~~v 175 (233)
..+.+++|.++++.-+.++++.+++ .++++..+||+++..+|...++.+.+|..+|+|+|.- +.. ++..++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l 197 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRF 197 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCC
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCc
Confidence 5678999999999999999999988 5679999999999989999999999999999999952 222 445677
Q ss_pred cEEE
Q psy14082 176 NTVN 179 (233)
Q Consensus 176 ~~VI 179 (233)
++||
T Consensus 198 ~~lV 201 (1104)
T 4ddu_A 198 DFVF 201 (1104)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 7766
No 109
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.31 E-value=0.022 Score=51.01 Aligned_cols=50 Identities=14% Similarity=-0.093 Sum_probs=38.2
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTV 63 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~ 63 (233)
+.+..+++.+++|||||.+ +..++..+.. .+.++++++||...+..+.+.
T Consensus 202 ~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~-------~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 202 AGHRLVVLTGGPGTGKSTT-TKAVADLAES-------LGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TTCSEEEEECCTTSCHHHH-HHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHH
T ss_pred HhCCEEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCeEEEecCcHHHHHHhHhh
Confidence 3467789999999999976 4455555543 356799999999999888764
No 110
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.14 E-value=0.031 Score=54.42 Aligned_cols=59 Identities=15% Similarity=0.019 Sum_probs=43.7
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
.+.++++.|+.|||||.+-+--++..+.... .+-...++|++++|+..+..+.+.+...
T Consensus 22 ~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~--~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 22 TGQDILVAAAAGSGKTAVLVERMIRKITAEE--NPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CSSCEEEEECTTCCHHHHHHHHHHHHHSCSS--SCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHHHhcCC--CCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 3778999999999999885444555444321 1113457999999999999999988874
No 111
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=94.85 E-value=0.081 Score=51.19 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=63.7
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhh----CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-cCcCCcCCCCccEE
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRR----ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-VAARGLDVEDVNTV 178 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-~~~~Gldi~~v~~V 178 (233)
..+.+++|.++|+..+.+.++.+.+ .++++..+++..+..++...++.+.+|+.+|+|+|. .+...+++.++++|
T Consensus 650 ~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lv 729 (1151)
T 2eyq_A 650 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 729 (1151)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEE
T ss_pred HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceE
Confidence 4567999999999999888888764 367889999999999999999999999999999995 34555777777776
Q ss_pred E
Q psy14082 179 N 179 (233)
Q Consensus 179 I 179 (233)
|
T Consensus 730 I 730 (1151)
T 2eyq_A 730 I 730 (1151)
T ss_dssp E
T ss_pred E
Confidence 6
No 112
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.84 E-value=0.037 Score=50.32 Aligned_cols=56 Identities=7% Similarity=-0.171 Sum_probs=41.4
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
+..+++.|+.|||||.+-+--+...+.... -...++|+++.|+..+.++.+.+.+.
T Consensus 15 ~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~----~~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 15 TGPCLVLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp SSEEEECCCTTSCHHHHHHHHHHHHHHHHC----CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCChHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 456889999999999874433333333211 12457999999999999999999887
No 113
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.59 E-value=0.047 Score=47.27 Aligned_cols=48 Identities=6% Similarity=-0.096 Sum_probs=36.4
Q ss_pred ceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVA 64 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~ 64 (233)
.+++.++.|||||.+ +..++..+... ....+++++||...+..+.+.+
T Consensus 47 ~~li~G~aGTGKT~l-l~~~~~~l~~~------~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 47 HVTINGPAGTGATTL-TKFIIEALIST------GETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp EEEEECCTTSCHHHH-HHHHHHHHHHT------TCCCEEEEESSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHH-HHHHHHHHHhc------CCceEEEecCcHHHHHHHHhhh
Confidence 789999999999965 55666666543 1246899999998888776554
No 114
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.54 E-value=0.21 Score=38.18 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=53.6
Q ss_pred CCeEEEEecchhHHHHHHHHHhhC-----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc-----C-cCCcCCCC
Q psy14082 106 AFKVIVFVETKKKVEDITRALRRE-----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV-----A-ARGLDVED 174 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~-----~-~~Gldi~~ 174 (233)
..+++|.++++..+++.++.+++. +.++..++|+.+...+...+ ..+..+|+|+|.. + ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL---KKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHH---HHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHH---hcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 458999999999999988888764 68899999999877665544 4466799999942 1 23356677
Q ss_pred ccEEE
Q psy14082 175 VNTVN 179 (233)
Q Consensus 175 v~~VI 179 (233)
++++|
T Consensus 159 ~~~lV 163 (220)
T 1t6n_A 159 IKHFI 163 (220)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 77766
No 115
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.50 E-value=0.034 Score=47.99 Aligned_cols=45 Identities=16% Similarity=0.088 Sum_probs=33.3
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKE 66 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~ 66 (233)
+=.++.++.|||||... .+.+.. ...+|++||++++..+.+.+.+
T Consensus 162 ~v~~I~G~aGsGKTt~I----~~~~~~---------~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEI----LSRVNF---------EEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEEEECTTSCHHHHH----HHHCCT---------TTCEEEESCHHHHHHHHHHHTT
T ss_pred cEEEEEcCCCCCHHHHH----HHHhcc---------CCeEEEeCCHHHHHHHHHHhhh
Confidence 34678999999999762 222211 2369999999999999988853
No 116
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.43 E-value=0.071 Score=48.99 Aligned_cols=56 Identities=5% Similarity=-0.126 Sum_probs=40.9
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
+..+++.|..|||||.+-.- -+.++..... -...++|+++.|+..|.++.+++.++
T Consensus 24 ~g~~lV~AgAGSGKT~vL~~-ri~~ll~~~~---~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 24 EGPLLIMAGAGSGKTRVLTH-RIAYLMAEKH---VAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp SSCEEEEECTTSCHHHHHHH-HHHHHHHTTC---CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHHH-HHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 45688999999999988433 3333433211 12357999999999999999999887
No 117
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.29 E-value=0.2 Score=39.05 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=54.9
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhh----CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----cCc-CCcCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRR----ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----VAA-RGLDVE 173 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~-~Gldi~ 173 (233)
..+.+++|.++++..+.++.+.+++ .++.+..++|+.+...+...++. ..+|+|+|. .+. ..+++.
T Consensus 100 ~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~ 175 (242)
T 3fe2_A 100 GDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLR 175 (242)
T ss_dssp TCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCT
T ss_pred CCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcc
Confidence 3567899999999999988777765 47899999999998877666554 579999994 222 235677
Q ss_pred CccEEE
Q psy14082 174 DVNTVN 179 (233)
Q Consensus 174 ~v~~VI 179 (233)
+++++|
T Consensus 176 ~~~~lV 181 (242)
T 3fe2_A 176 RTTYLV 181 (242)
T ss_dssp TCCEEE
T ss_pred cccEEE
Confidence 788776
No 118
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=94.19 E-value=0.14 Score=45.13 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=55.0
Q ss_pred CCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc
Q psy14082 106 AFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD 164 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~ 164 (233)
.++++|.++++.-++.....|.+.|+.+..+||+.+..++......+..|..+++++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 36899999999999999999999999999999999999999999999999999999984
No 119
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=93.99 E-value=0.31 Score=38.32 Aligned_cols=74 Identities=15% Similarity=0.214 Sum_probs=54.9
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc-----Cc--CCc
Q psy14082 102 AKNPAFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV-----AA--RGL 170 (233)
Q Consensus 102 ~~~~~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~-----~~--~Gl 170 (233)
....+.+++|.++++..+.++++.+++. ++.+..++|+.+...+...+. +..+|+|+|.. +. .++
T Consensus 107 ~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~ 182 (249)
T 3ber_A 107 ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA----KKPHIIIATPGRLIDHLENTKGF 182 (249)
T ss_dssp HSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH----TCCSEEEECHHHHHHHHHHSTTC
T ss_pred cCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCc
Confidence 3445678999999999999888887654 788999999988766554433 46899999942 21 356
Q ss_pred CCCCccEEE
Q psy14082 171 DVEDVNTVN 179 (233)
Q Consensus 171 di~~v~~VI 179 (233)
++.++++||
T Consensus 183 ~l~~~~~lV 191 (249)
T 3ber_A 183 NLRALKYLV 191 (249)
T ss_dssp CCTTCCEEE
T ss_pred CccccCEEE
Confidence 777788776
No 120
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=93.98 E-value=0.24 Score=42.36 Aligned_cols=124 Identities=18% Similarity=0.215 Sum_probs=79.6
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----cCcCC-cCCCC
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----VAARG-LDVED 174 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~~G-ldi~~ 174 (233)
.+.+++|.++|+.-+.++++.+++. ++++..++|+.+...+...+. ...+|+|+|. .+.++ +++.+
T Consensus 128 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~Ivv~Tp~~l~~~l~~~~~~l~~ 203 (434)
T 2db3_A 128 GRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECIT----RGCHVVIATPGRLLDFVDRTFITFED 203 (434)
T ss_dssp TCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHT----TCCSEEEECHHHHHHHHHTTSCCCTT
T ss_pred CCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhh----cCCCEEEEChHHHHHHHHhCCccccc
Confidence 3568999999999999998888763 577889999998776654432 3579999993 22222 34455
Q ss_pred ccEEEE--------------------------------ec--CCCC----------------------cccccceeeEEe
Q psy14082 175 VNTVNI--------------------------------GS--LQLS----------------------ANHNISQVIEVV 198 (233)
Q Consensus 175 v~~VI~--------------------------------~d--~P~~----------------------~~~~i~~~~~~~ 198 (233)
++++|. +. +|.. ....+.+.+..+
T Consensus 204 ~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~ 283 (434)
T 2db3_A 204 TRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEV 283 (434)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEEC
T ss_pred CCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEe
Confidence 555442 11 0000 001112344455
Q ss_pred ecchHHHHHHHHHHhhcCcccccccchhhHhhhc
Q psy14082 199 QDYEKEKRLFSLIRELGKYTLITQESSSTLSEMV 232 (233)
Q Consensus 199 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 232 (233)
.+.++...+.+.+.+.....+.+.+.+..++.++
T Consensus 284 ~~~~k~~~l~~~l~~~~~~~lVF~~t~~~a~~l~ 317 (434)
T 2db3_A 284 NKYAKRSKLIEILSEQADGTIVFVETKRGADFLA 317 (434)
T ss_dssp CGGGHHHHHHHHHHHCCTTEEEECSSHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEeCcHHHHHHH
Confidence 6666777788888777666778888777776553
No 121
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=93.78 E-value=0.15 Score=45.75 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=54.8
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHh--hCCCCCEEEecc
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDF--RQGKAPILVATD 164 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f--~~g~~~iLv~T~ 164 (233)
..+++||.++++.-++...+.|.+.|+.+..++|+++..++...++.+ ..+..+|+++|+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 356999999999999999999999999999999999999999998888 578899999996
No 122
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=93.74 E-value=0.053 Score=46.52 Aligned_cols=48 Identities=8% Similarity=0.012 Sum_probs=35.7
Q ss_pred CCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHH
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQ 58 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~ 58 (233)
|.-....++++.++||||||.. +-+++..+... +..++|+=|..|+..
T Consensus 48 ~~~~~~~h~~i~G~tGsGKs~~-~~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 48 PRDAEPRHLLVNGATGTGKSVL-LRELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp CGGGGGGCEEEEECTTSSHHHH-HHHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred ccccCcceEEEECCCCCCHHHH-HHHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 4444678999999999999987 45566555542 567888889888864
No 123
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=93.47 E-value=0.15 Score=44.54 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=40.4
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcC
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSA 70 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~ 70 (233)
.|....+.+.||||||++ +..++... +..+|||+|+...|.|+++.++.|.+.
T Consensus 13 ~~~~~~l~g~~gs~ka~~-~a~l~~~~----------~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL-VAEIAERH----------AGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp TTCEEEEECCCTTHHHHH-HHHHHHHS----------SSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCCeEEEeCCCchHHHHH-HHHHHHHh----------CCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 466788899999999987 33333322 223899999999999999999998543
No 124
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=93.32 E-value=0.26 Score=38.06 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=53.6
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhhC-----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc-----C-cCCcC
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRRE-----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV-----A-ARGLD 171 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~-----~-~~Gld 171 (233)
...+.+++|.++++..+++..+.+++. ++++..++|+.+..++...+ ...+|+|+|.. + ...++
T Consensus 89 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~ 163 (230)
T 2oxc_A 89 ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLN 163 (230)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSC
T ss_pred cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcc
Confidence 345679999999999999999888764 67889999999877665543 25799999952 1 23456
Q ss_pred CCCccEEE
Q psy14082 172 VEDVNTVN 179 (233)
Q Consensus 172 i~~v~~VI 179 (233)
..+++++|
T Consensus 164 ~~~~~~lV 171 (230)
T 2oxc_A 164 PGSIRLFI 171 (230)
T ss_dssp GGGCCEEE
T ss_pred cccCCEEE
Confidence 66777665
No 125
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.06 E-value=0.28 Score=37.72 Aligned_cols=72 Identities=13% Similarity=0.247 Sum_probs=48.7
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhC---CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----c-CcCCcCCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRE---RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----V-AARGLDVED 174 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~-~~~Gldi~~ 174 (233)
..+.++++.++++..+.++.+.+.+. +..+..++|+.+...+...+ .. ..+|+|+|. . ....+++.+
T Consensus 92 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~iiv~Tp~~l~~~~~~~~~~~~~ 167 (228)
T 3iuy_A 92 RNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---SK-GVDIIIATPGRLNDLQMNNSVNLRS 167 (228)
T ss_dssp -CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---HS-CCSEEEECHHHHHHHHHTTCCCCTT
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---cC-CCCEEEECHHHHHHHHHcCCcCccc
Confidence 36678999999999999999988764 67888999987766554443 32 489999994 1 223456777
Q ss_pred ccEEE
Q psy14082 175 VNTVN 179 (233)
Q Consensus 175 v~~VI 179 (233)
+++||
T Consensus 168 ~~~lV 172 (228)
T 3iuy_A 168 ITYLV 172 (228)
T ss_dssp CCEEE
T ss_pred ceEEE
Confidence 88776
No 126
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=92.64 E-value=0.46 Score=35.69 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=52.9
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhC--CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----cCc-CCcCCCCc
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRE--RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----VAA-RGLDVEDV 175 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~-~Gldi~~v 175 (233)
..+.++++.++++..+....+.+.+. +.++..++|+.+...+...+.. ..+|+|+|. .+. ..+++.++
T Consensus 70 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~ 145 (207)
T 2gxq_A 70 GRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLR----GADAVVATPGRALDYLRQGVLDLSRV 145 (207)
T ss_dssp TCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH----CCSEEEECHHHHHHHHHHTSSCCTTC
T ss_pred CCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhC----CCCEEEECHHHHHHHHHcCCcchhhc
Confidence 35678999999999999999999775 4678889998876655544432 578999994 222 23566777
Q ss_pred cEEE
Q psy14082 176 NTVN 179 (233)
Q Consensus 176 ~~VI 179 (233)
++||
T Consensus 146 ~~iV 149 (207)
T 2gxq_A 146 EVAV 149 (207)
T ss_dssp SEEE
T ss_pred eEEE
Confidence 7766
No 127
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=92.37 E-value=0.63 Score=38.54 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=53.3
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhC-----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccC------cCCcCCC
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRE-----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVA------ARGLDVE 173 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~------~~Gldi~ 173 (233)
.+.+++|.++++..+++..+.+.+. ++++..++|+.+.......+ ..+..+|+|+|... ...++..
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~iiv~T~~~l~~~~~~~~~~~~ 151 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL---KKNCPHIVVGTPGRILALARNKSLNLK 151 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHH---HHSCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHH---hcCCCCEEEECHHHHHHHHHcCCcccc
Confidence 4569999999999999988888764 78899999999877765544 34668999999421 2234566
Q ss_pred CccEEE
Q psy14082 174 DVNTVN 179 (233)
Q Consensus 174 ~v~~VI 179 (233)
++++||
T Consensus 152 ~~~~vV 157 (391)
T 1xti_A 152 HIKHFI 157 (391)
T ss_dssp TCSEEE
T ss_pred ccCEEE
Confidence 666665
No 128
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=92.36 E-value=0.26 Score=38.14 Aligned_cols=71 Identities=20% Similarity=0.220 Sum_probs=49.9
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc-----CcC--CcCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV-----AAR--GLDV 172 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~-----~~~--Gldi 172 (233)
..+.+++|.++++..+.+..+.+++. ++.+..++|+.+.......+ +..+|+|+|.. +.+ .++.
T Consensus 95 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~ 169 (236)
T 2pl3_A 95 TDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHA 169 (236)
T ss_dssp GGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCC
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccc
Confidence 35678999999999999999888764 47888999987765544433 36799999942 112 3566
Q ss_pred CCccEEE
Q psy14082 173 EDVNTVN 179 (233)
Q Consensus 173 ~~v~~VI 179 (233)
.++++||
T Consensus 170 ~~~~~lV 176 (236)
T 2pl3_A 170 TDLQMLV 176 (236)
T ss_dssp TTCCEEE
T ss_pred ccccEEE
Confidence 6777666
No 129
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.98 E-value=0.1 Score=38.74 Aligned_cols=51 Identities=12% Similarity=0.021 Sum_probs=30.9
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVA 64 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~ 64 (233)
..|..+++.+|+|+|||.. +-.+...+... .+..++ .++..++..++...+
T Consensus 36 ~~g~~~~l~G~~G~GKTtL-~~~i~~~~~~~------~g~~~~-~~~~~~~~~~~~~~~ 86 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHL-AVATLKAIYEK------KGIRGY-FFDTKDLIFRLKHLM 86 (180)
T ss_dssp GGCCEEEECCSSSSSHHHH-HHHHHHHHHHH------SCCCCC-EEEHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHH-HHHHHHHHHHH------cCCeEE-EEEHHHHHHHHHHHh
Confidence 3478899999999999966 44455554322 132333 345556666655444
No 130
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=91.87 E-value=0.74 Score=34.51 Aligned_cols=72 Identities=13% Similarity=0.216 Sum_probs=51.5
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhC-----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----cCcC-CcCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRE-----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----VAAR-GLDV 172 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~~-Gldi 172 (233)
..+.++++.++++..+++..+.+.+. +..+..++|+.+..+.... + .+..+|+|+|. .+.+ ..++
T Consensus 69 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~ 144 (206)
T 1vec_A 69 KDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKV 144 (206)
T ss_dssp SCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCC
T ss_pred CCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCc
Confidence 34568999999999999888888653 5788889999887654433 2 24679999995 2222 3456
Q ss_pred CCccEEE
Q psy14082 173 EDVNTVN 179 (233)
Q Consensus 173 ~~v~~VI 179 (233)
.+++++|
T Consensus 145 ~~~~~lV 151 (206)
T 1vec_A 145 DHVQMIV 151 (206)
T ss_dssp TTCCEEE
T ss_pred ccCCEEE
Confidence 6777766
No 131
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.55 E-value=0.15 Score=39.57 Aligned_cols=53 Identities=9% Similarity=-0.147 Sum_probs=33.3
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
..|.-+++.+++|+|||.. ++-++..... .+..++++.. .+-..++.+.+..+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl-~~~~~~~~~~-------~~~~v~~~~~-e~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIF-SQQFLWNGLK-------MGEPGIYVAL-EEHPVQVRQNMAQF 73 (247)
T ss_dssp ETTCEEEEEECTTSSHHHH-HHHHHHHHHH-------TTCCEEEEES-SSCHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEEc-cCCHHHHHHHHHHc
Confidence 4677789999999999965 4444444332 2445777663 34456666666544
No 132
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=91.24 E-value=1.5 Score=29.79 Aligned_cols=50 Identities=18% Similarity=0.399 Sum_probs=44.0
Q ss_pred EEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCC
Q psy14082 109 VIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAP 158 (233)
Q Consensus 109 ~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 158 (233)
.++|.+...-...+...++..|..++.++++.+.+.|.+-++.|.....+
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvd 54 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVD 54 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCc
Confidence 46888889999999999999999999999999999999999998765443
No 133
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=91.15 E-value=0.48 Score=36.74 Aligned_cols=72 Identities=13% Similarity=0.188 Sum_probs=45.5
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----cCcC-CcCCCC
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----VAAR-GLDVED 174 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~~-Gldi~~ 174 (233)
.+.+++|.++++..+..+.+.+++. +..+..++|+.+.... .+.+..+..+|+|+|. .+.+ .++...
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 5679999999999999998888754 5677888888654433 3445567789999993 3333 356667
Q ss_pred ccEEE
Q psy14082 175 VNTVN 179 (233)
Q Consensus 175 v~~VI 179 (233)
+++||
T Consensus 174 ~~~lV 178 (237)
T 3bor_A 174 IKMFV 178 (237)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 77766
No 134
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=90.98 E-value=1.2 Score=35.16 Aligned_cols=71 Identities=18% Similarity=0.241 Sum_probs=52.8
Q ss_pred CCCeEEEEecchhHHHHHHHHHhh----CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----cC--cCCcCCC
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRR----ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----VA--ARGLDVE 173 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~--~~Gldi~ 173 (233)
.+.++++.++++.-+++..+.+++ .+..+..++|+.+.......+.. + .+|+|+|. .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGN---G-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHH---C-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcC---C-CCEEEEcHHHHHHHHHccCCcccc
Confidence 567899999999999999888876 35678889999887665544432 3 89999993 11 1246777
Q ss_pred CccEEE
Q psy14082 174 DVNTVN 179 (233)
Q Consensus 174 ~v~~VI 179 (233)
++++||
T Consensus 201 ~l~~lV 206 (262)
T 3ly5_A 201 NLQCLV 206 (262)
T ss_dssp TCCEEE
T ss_pred cCCEEE
Confidence 888776
No 135
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=90.82 E-value=3.3 Score=30.25 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=31.7
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCC
Q psy14082 44 GPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPK 82 (233)
Q Consensus 44 ~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~ 82 (233)
+.++||.|++++-+..+++.+... ++.+..++|+.+.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~ 67 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQ 67 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc--CCCEEEEECCCCH
Confidence 457999999999999999999877 7788899998653
No 136
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=90.66 E-value=0.92 Score=35.38 Aligned_cols=71 Identities=14% Similarity=0.101 Sum_probs=50.8
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc-----Cc-CCcCCCC
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV-----AA-RGLDVED 174 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~-----~~-~Gldi~~ 174 (233)
.+.+++|.++++..+.+..+.+++. ++.+..++|+.+.......+ ....+|+|+|.. +. ..+++.+
T Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~ 174 (253)
T 1wrb_A 99 AYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEF 174 (253)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhh
Confidence 3468999999999999988887653 57788899988766554433 246799999942 22 2356677
Q ss_pred ccEEE
Q psy14082 175 VNTVN 179 (233)
Q Consensus 175 v~~VI 179 (233)
++++|
T Consensus 175 ~~~lV 179 (253)
T 1wrb_A 175 CKYIV 179 (253)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 77766
No 137
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.51 E-value=0.52 Score=38.53 Aligned_cols=54 Identities=6% Similarity=-0.106 Sum_probs=34.8
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
+..|.=+++.+++|+|||. |++-+......+ +..+++++.- +-..|+..++...
T Consensus 65 l~~G~l~li~G~pG~GKTt-l~l~ia~~~a~~-------g~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTA-FALKQAKNMSDN-------DDVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp BCTTCEEEEECCTTSSHHH-HHHHHHHHHHTT-------TCEEEEEESS-SCHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHH-HHHHHHHHHHHc-------CCeEEEEECC-CCHHHHHHHHHHH
Confidence 4567778999999999994 455555444332 3567777643 4455666665544
No 138
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.50 E-value=0.25 Score=37.13 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=27.2
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCc
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPT 53 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~Pt 53 (233)
|+=.+..++.|+|||.. ++-++.++.. .+.+++++.|.
T Consensus 3 g~i~vi~G~~gsGKTT~-ll~~~~~~~~-------~g~~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTE-LLSFVEIYKL-------GKKKVAVFKPK 40 (184)
T ss_dssp CCEEEEEESTTSSHHHH-HHHHHHHHHH-------TTCEEEEEEEC
T ss_pred cEEEEEECCCCCCHHHH-HHHHHHHHHH-------CCCeEEEEeec
Confidence 56677899999999977 4445555443 25578888887
No 139
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.41 E-value=0.13 Score=36.86 Aligned_cols=19 Identities=5% Similarity=-0.293 Sum_probs=16.5
Q ss_pred CCCCceeEecCCCCCchHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~ 24 (233)
..+..+++.+++|+|||..
T Consensus 22 ~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TCCSCEEEESSTTSSHHHH
T ss_pred CCCCCEEEECCCCCCHHHH
Confidence 4567899999999999976
No 140
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=89.83 E-value=0.26 Score=40.61 Aligned_cols=28 Identities=0% Similarity=-0.231 Sum_probs=22.3
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhc
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISH 35 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~ 35 (233)
.+..+++.+|||+|||++ +-.++..+..
T Consensus 44 ~~~~lli~GpPGTGKT~~-v~~v~~~L~~ 71 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQL-VNDVMDELIT 71 (318)
T ss_dssp CCCEEEEECCCSHHHHHH-HHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 467899999999999977 5566766654
No 141
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=89.67 E-value=0.24 Score=38.60 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=28.6
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcH
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTR 54 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~Ptr 54 (233)
.|.=.++.+++|+|||.+ ++-.+.++.. .+.+++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~-ll~~~~r~~~-------~g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAE-LIRRLHRLEY-------ADVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHH-HHHHHHHHHH-------TTCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHH-HHHHHHHHHh-------cCCEEEEEEecc
Confidence 355677889999999977 5556666543 366788887754
No 142
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.66 E-value=0.13 Score=39.93 Aligned_cols=53 Identities=9% Similarity=-0.006 Sum_probs=32.5
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHh-hhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVH-ISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~-l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
+.|.=+++.+++|+|||.- ++-++.. ... .+..+++++- .+-..|+.+.+..+
T Consensus 28 ~~G~l~~i~G~pG~GKT~l-~l~~~~~~~~~-------~~~~v~~~s~-E~~~~~~~~~~~~~ 81 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTF-AAQFIYKGAEE-------YGEPGVFVTL-EERARDLRREMASF 81 (251)
T ss_dssp ETTCEEEEECCTTSSHHHH-HHHHHHHHHHH-------HCCCEEEEES-SSCHHHHHHHHHTT
T ss_pred CCCeEEEEEeCCCCCHHHH-HHHHHHHHHHh-------cCCCceeecc-cCCHHHHHHHHHHc
Confidence 4577789999999999944 4443332 222 1334666653 34466666666554
No 143
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=89.66 E-value=0.55 Score=35.84 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=45.3
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhh----CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccC------cCCcCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRR----ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVA------ARGLDVE 173 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~------~~Gldi~ 173 (233)
..+.++++.++++..+.+..+.+.+ .+..+..++|+.+..++... +. ..+|+|+|... ...++..
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~ 154 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTD 154 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchh
Confidence 4567999999999999988888765 36788889998776554432 22 37899999521 2345666
Q ss_pred CccEEE
Q psy14082 174 DVNTVN 179 (233)
Q Consensus 174 ~v~~VI 179 (233)
.+++||
T Consensus 155 ~~~~iV 160 (224)
T 1qde_A 155 KIKMFI 160 (224)
T ss_dssp TCCEEE
T ss_pred hCcEEE
Confidence 777766
No 144
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.42 E-value=0.41 Score=35.00 Aligned_cols=27 Identities=7% Similarity=-0.241 Sum_probs=20.0
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhc
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISH 35 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~ 35 (233)
+..+++.+++|+|||.. +-.+...+..
T Consensus 43 ~~~~ll~G~~G~GKT~l-~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAI-VEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHH-HHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHH-HHHHHHHHHh
Confidence 46799999999999966 4555555543
No 145
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=89.41 E-value=0.14 Score=36.59 Aligned_cols=18 Identities=6% Similarity=-0.304 Sum_probs=15.6
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.+..+++.+++|+|||..
T Consensus 26 ~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp CSSCEEEEEETTCCHHHH
T ss_pred CCCcEEEECCCCccHHHH
Confidence 467899999999999965
No 146
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.27 E-value=0.38 Score=36.19 Aligned_cols=25 Identities=4% Similarity=-0.194 Sum_probs=19.2
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
..+++.+++|+|||.. +-.+...+.
T Consensus 55 ~~~~l~G~~GtGKT~l-a~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL-LAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHH-HHHHHHHHH
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 6799999999999976 445555554
No 147
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=89.17 E-value=0.97 Score=43.32 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=55.7
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhC----CC----eeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----cCcCCcC
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRE----RH----SAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----VAARGLD 171 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~~Gld 171 (233)
.+.+++|.++|+..+.++++.+++. ++ .+..+||+.+..++....+.+++ .+|+|+|+ .+.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~--- 172 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRE--- 172 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTT---
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHH---
Confidence 5679999999999999988888643 56 78999999999998888888877 89999995 2222
Q ss_pred CCCccEEE
Q psy14082 172 VEDVNTVN 179 (233)
Q Consensus 172 i~~v~~VI 179 (233)
+.++++||
T Consensus 173 L~~l~~lV 180 (1054)
T 1gku_B 173 LGHFDFIF 180 (1054)
T ss_dssp SCCCSEEE
T ss_pred hccCCEEE
Confidence 44666665
No 148
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=89.15 E-value=0.85 Score=40.73 Aligned_cols=54 Identities=9% Similarity=0.058 Sum_probs=42.5
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
.+-+++..+.|+|||.+.+.-++..+.. .++..+++++|+++.|..+++.++.+
T Consensus 178 ~r~~~i~~~Rq~GKS~~~a~~~l~~~~~------~~~~~i~~va~t~~qA~~~~~~i~~~ 231 (592)
T 3cpe_A 178 KRMTVCNLSRQLGKTTVVAIFLAHFVCF------NKDKAVGILAHKGSMSAEVLDRTKQA 231 (592)
T ss_dssp CSEEEEEECSSSCHHHHHHHHHHHHHHT------SSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred ccEEEEEEcCccChHHHHHHHHHHHHHh------CCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 4568899999999998866545544443 23568999999999999999888877
No 149
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.14 E-value=0.51 Score=34.43 Aligned_cols=27 Identities=7% Similarity=-0.162 Sum_probs=19.7
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhc
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISH 35 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~ 35 (233)
+..+++.+++|+|||.. +-.+...+..
T Consensus 43 ~~~vll~G~~G~GKT~l-a~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI-VEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHH-HHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHH-HHHHHHHHHh
Confidence 56789999999999965 4445555543
No 150
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.82 E-value=0.36 Score=39.38 Aligned_cols=26 Identities=8% Similarity=-0.207 Sum_probs=20.3
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
+..+++.+|||+|||.. +..+...+.
T Consensus 152 ~~~lll~G~~GtGKT~L-a~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYL-LAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHH-HHHHHHHHH
T ss_pred CceEEEECCCCCCHHHH-HHHHHHHHH
Confidence 57899999999999976 445555554
No 151
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=88.59 E-value=1 Score=39.29 Aligned_cols=70 Identities=16% Similarity=0.139 Sum_probs=47.2
Q ss_pred CCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----cCcCC-c-CCCC
Q psy14082 106 AFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----VAARG-L-DVED 174 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~~G-l-di~~ 174 (233)
+.+++|.++++..+......+.+. ++.+..+||+.+...+...+.. ..+|+|+|. .+..+ + ++.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHH----HCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhC----CCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999998888888764 8899999999876665433332 478999994 22222 3 5667
Q ss_pred ccEEE
Q psy14082 175 VNTVN 179 (233)
Q Consensus 175 v~~VI 179 (233)
+++||
T Consensus 131 ~~~vV 135 (556)
T 4a2p_A 131 FTLMI 135 (556)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 77766
No 152
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=88.38 E-value=0.46 Score=36.00 Aligned_cols=39 Identities=10% Similarity=0.030 Sum_probs=28.9
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCc
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPT 53 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~Pt 53 (233)
.|+=.+..++.|||||.+ ++-++.+... .+.+++++.|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~-ll~~a~r~~~-------~g~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEE-LIRRIRRAKI-------AKQKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHH-HHHHHHHHHH-------TTCCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHH-HHHHHHHHHH-------CCCEEEEEEec
Confidence 456677788899999977 5556665543 36789999987
No 153
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=88.11 E-value=1.9 Score=35.95 Aligned_cols=70 Identities=17% Similarity=0.159 Sum_probs=49.9
Q ss_pred CCeEEEEecchhHHHHHHHHHhh----CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----cCcC-CcCCCCc
Q psy14082 106 AFKVIVFVETKKKVEDITRALRR----ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----VAAR-GLDVEDV 175 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~~-Gldi~~v 175 (233)
..+++|.++++..+.++++.+++ .++++..++|+.+..+....+ . ...+|+|+|. .+.+ .+++.++
T Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 176 (417)
T 2i4i_A 101 YPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDL---E-RGCHLLVATPGRLVDMMERGKIGLDFC 176 (417)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHH---T-TCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHh---h-CCCCEEEEChHHHHHHHHcCCcChhhC
Confidence 36799999999999998888865 467889999998876654433 2 3578999994 1112 2455566
Q ss_pred cEEE
Q psy14082 176 NTVN 179 (233)
Q Consensus 176 ~~VI 179 (233)
++||
T Consensus 177 ~~iV 180 (417)
T 2i4i_A 177 KYLV 180 (417)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 6555
No 154
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.06 E-value=0.26 Score=37.99 Aligned_cols=26 Identities=4% Similarity=-0.409 Sum_probs=19.7
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
..+.+++.+|+|+|||.. +..++..+
T Consensus 57 kkn~ili~GPPGtGKTt~-a~ala~~l 82 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYF-GMSFIHFI 82 (212)
T ss_dssp TCSEEEEESCGGGCHHHH-HHHHHHHH
T ss_pred cccEEEEECCCCCCHHHH-HHHHHHHh
Confidence 345689999999999955 56666655
No 155
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=87.95 E-value=1.3 Score=37.47 Aligned_cols=53 Identities=9% Similarity=0.066 Sum_probs=41.6
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
+-+++..+.+.|||.+.+.-++..+.. .++..+++++||++-|..+++.++.+
T Consensus 179 R~~vi~~sRq~GKT~l~a~~~l~~a~~------~~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 179 RMTVCNLSRQLGKTTVVAIFLAHFVCF------NKDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp SEEEEEECSSSCHHHHHHHHHHHHHHS------SSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred cEEEEEEcCcCChhHHHHHHHHHHHHh------CCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 457899999999998766655544443 24668999999999999999888877
No 156
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=87.92 E-value=1.4 Score=40.76 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=47.5
Q ss_pred CCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc-----CcCC-c-CCCC
Q psy14082 106 AFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV-----AARG-L-DVED 174 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~-----~~~G-l-di~~ 174 (233)
+.+++|.++++..+......+++. ++++..+||+.+...+...+. +..+|+|+|.- +.++ + ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 679999999999998888877664 899999999987666544333 25789999942 2222 3 5566
Q ss_pred ccEEE
Q psy14082 175 VNTVN 179 (233)
Q Consensus 175 v~~VI 179 (233)
+++||
T Consensus 372 ~~~iV 376 (797)
T 4a2q_A 372 FTLMI 376 (797)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 77766
No 157
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=87.83 E-value=1.4 Score=37.11 Aligned_cols=101 Identities=21% Similarity=0.241 Sum_probs=75.0
Q ss_pred CCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCCC
Q psy14082 4 PSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPKG 83 (233)
Q Consensus 4 ~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~~ 83 (233)
.++.+ ++++.++||+|||++++++++..+. -
T Consensus 20 ~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~--------------------------------~---------------- 50 (494)
T 1wp9_A 20 KCKET-NCLIVLPTGLGKTLIAMMIAEYRLT--------------------------------K---------------- 50 (494)
T ss_dssp HGGGS-CEEEECCTTSCHHHHHHHHHHHHHH--------------------------------H----------------
T ss_pred HHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh--------------------------------c----------------
Confidence 35566 9999999999999999888775320 0
Q ss_pred CeeEEeccchhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhC-CC---eeEEEeCCCCHHHHHHHHHHhhCCCCCE
Q psy14082 84 PQDCLPLHRFVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRE-RH---SAICIHGDKTQQDRDYVLNDFRQGKAPI 159 (233)
Q Consensus 84 ~~~lv~l~r~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~-~~---~~~~~~~~~~~~~r~~~~~~f~~g~~~i 159 (233)
.+.+++|.++++..+....+.+.+. +. .+..+||+.+..++..... ..+|
T Consensus 51 ---------------------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~i 104 (494)
T 1wp9_A 51 ---------------------YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKV 104 (494)
T ss_dssp ---------------------SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSE
T ss_pred ---------------------CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCE
Confidence 2358999999999999888888765 55 8899999999887665543 3689
Q ss_pred EEeccc------CcCCcCCCCccEEE
Q psy14082 160 LVATDV------AARGLDVEDVNTVN 179 (233)
Q Consensus 160 Lv~T~~------~~~Gldi~~v~~VI 179 (233)
+|+|.- ....++..+.++||
T Consensus 105 vv~T~~~l~~~~~~~~~~~~~~~~vI 130 (494)
T 1wp9_A 105 IVATPQTIENDLLAGRISLEDVSLIV 130 (494)
T ss_dssp EEECHHHHHHHHHTTSCCTTSCSEEE
T ss_pred EEecHHHHHHHHhcCCcchhhceEEE
Confidence 999942 11234566677666
No 158
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.60 E-value=0.55 Score=40.45 Aligned_cols=54 Identities=6% Similarity=-0.106 Sum_probs=34.6
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
+..|.=+++.|++|+|||. |++-+......+ +..+++++-- +-..|+..++...
T Consensus 194 l~~G~liiIaG~pG~GKTt-lal~ia~~~a~~-------g~~vl~fSlE-ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTA-FALKQAKNMSDN-------DDVVNLHSLE-MGKKENIKRLIVT 247 (444)
T ss_dssp BCSSCEEEEEECSSSSHHH-HHHHHHHHHHHT-------TCEEEEECSS-SCTTHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCChHH-HHHHHHHHHHHc-------CCEEEEEECC-CCHHHHHHHHHHH
Confidence 3457778999999999994 466566555432 4567777643 3445555555443
No 159
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=87.38 E-value=0.59 Score=35.63 Aligned_cols=71 Identities=15% Similarity=0.216 Sum_probs=49.2
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhC--------CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----cCcC-Cc
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRE--------RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----VAAR-GL 170 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~~-Gl 170 (233)
.+.+++|.++++..+.+..+.+++. +..+..++|+.+..+..+ .+ ....+|+|+|. .+.+ .+
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCC
Confidence 4578999999999999888877653 578888899876443322 12 23578999994 2222 35
Q ss_pred CCCCccEEE
Q psy14082 171 DVEDVNTVN 179 (233)
Q Consensus 171 di~~v~~VI 179 (233)
+..+++++|
T Consensus 147 ~~~~~~~lV 155 (219)
T 1q0u_A 147 DVHTAHILV 155 (219)
T ss_dssp CGGGCCEEE
T ss_pred CcCcceEEE
Confidence 666777766
No 160
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=87.31 E-value=0.77 Score=38.99 Aligned_cols=102 Identities=11% Similarity=0.098 Sum_probs=50.9
Q ss_pred CCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCCC
Q psy14082 4 PSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPKG 83 (233)
Q Consensus 4 ~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~~ 83 (233)
++-.|+-+.+.+++|+|||.... -+...+..+ ..+..++|+ ++-|-.++...+...++..++.+..+..
T Consensus 170 pi~rGQr~~IvG~sG~GKTtLl~-~Iar~i~~~-----~~~v~~I~~-----lIGER~~Ev~~~~~~~~~~vV~atadep 238 (422)
T 3ice_A 170 PIGRGQRGLIVAPPKAGKTMLLQ-NIAQSIAYN-----HPDCVLMVL-----LIDERPEEVTEMQRLVKGEVVASTFDEP 238 (422)
T ss_dssp CCBTTCEEEEECCSSSSHHHHHH-HHHHHHHHH-----CTTSEEEEE-----EESSCHHHHHHHHTTCSSEEEEECTTSC
T ss_pred eecCCcEEEEecCCCCChhHHHH-HHHHHHhhc-----CCCeeEEEE-----EecCChHHHHHHHHHhCeEEEEeCCCCC
Confidence 45678999999999999997633 233333332 234444442 2333333444443444555555554443
Q ss_pred CeeEEeccchhhhchHHHhcCCCCeEEEEecchh
Q psy14082 84 PQDCLPLHRFVFNCQYEMAKNPAFKVIVFVETKK 117 (233)
Q Consensus 84 ~~~lv~l~r~~~~~~~~~~~~~~~k~iIf~~~~~ 117 (233)
+..-+......--..+++. ..+..++|+..+.-
T Consensus 239 ~~~r~~~a~~alt~AEyfr-d~G~dVLil~DslT 271 (422)
T 3ice_A 239 ASRHVQVAEMVIEKAKRLV-EHKKDVIILLDSIT 271 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTSCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHHH-hcCCCEEEEEeCch
Confidence 3210000001111222344 36778888876643
No 161
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=86.97 E-value=0.61 Score=35.64 Aligned_cols=27 Identities=4% Similarity=-0.271 Sum_probs=20.0
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
.+..+++.+|+|+|||.. +-.+...+.
T Consensus 51 ~~~~~ll~G~~G~GKT~l-a~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL-IHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHH-HHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 467899999999999965 444555443
No 162
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=86.49 E-value=0.52 Score=37.91 Aligned_cols=28 Identities=7% Similarity=-0.268 Sum_probs=20.2
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
..+..+++.+|+|+|||.. +-.+...+.
T Consensus 65 ~~~~~vll~G~~GtGKT~l-a~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTV-ALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHH-HHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHH-HHHHHHHHH
Confidence 3456799999999999976 444555443
No 163
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=86.48 E-value=3.1 Score=34.24 Aligned_cols=71 Identities=14% Similarity=0.125 Sum_probs=51.7
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhh----CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc-----C-cCCcCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRR----ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV-----A-ARGLDVE 173 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~-----~-~~Gldi~ 173 (233)
..+.++++.++++..+.+..+.+.+ .++.+..++|+.+..+....+. ..+|+|+|.. + ...++..
T Consensus 87 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~ 161 (394)
T 1fuu_A 87 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTD 161 (394)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchh
Confidence 3567999999999999988887765 4678899999998777665544 4689999932 1 1234455
Q ss_pred CccEEE
Q psy14082 174 DVNTVN 179 (233)
Q Consensus 174 ~v~~VI 179 (233)
++++||
T Consensus 162 ~~~~vI 167 (394)
T 1fuu_A 162 KIKMFI 167 (394)
T ss_dssp TCCEEE
T ss_pred hCcEEE
Confidence 666665
No 164
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=86.23 E-value=0.58 Score=37.75 Aligned_cols=30 Identities=7% Similarity=-0.395 Sum_probs=20.6
Q ss_pred CCCCCCCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
|.....+-+++.+|+|+|||.. +-.+...+
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~l-a~aiA~~l 60 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQ-CELVFRKM 60 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHH-HHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHH-HHHHHHHh
Confidence 3333456688899999999966 44455544
No 165
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=86.09 E-value=0.39 Score=35.41 Aligned_cols=22 Identities=9% Similarity=-0.303 Sum_probs=17.9
Q ss_pred CCCCCCCceeEecCCCCCchHH
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~ 24 (233)
|....+..+++.+++|||||..
T Consensus 6 ~~~~~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 6 PEFMLLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CTTCCCCCEEEECSTTSSHHHH
T ss_pred cccccCCeEEEEeCCCCCHHHH
Confidence 3445677899999999999965
No 166
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=85.96 E-value=0.54 Score=35.85 Aligned_cols=54 Identities=15% Similarity=-0.044 Sum_probs=30.6
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
+..|.-+.+.+++|+|||.. +.-+...+... +..++++... ....++...+..+
T Consensus 20 i~~G~~~~i~G~~GsGKTtl-~~~l~~~~~~~-------~~~v~~~~~~-~~~~~~~~~~~~~ 73 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIF-SLHFIAKGLRD-------GDPCIYVTTE-ESRDSIIRQAKQF 73 (235)
T ss_dssp EETTCEEEEECSTTSSHHHH-HHHHHHHHHHH-------TCCEEEEESS-SCHHHHHHHHHHT
T ss_pred CcCCCEEEEEcCCCCCHHHH-HHHHHHHHHHC-------CCeEEEEEcc-cCHHHHHHHHHHh
Confidence 45677788999999999954 33344333322 2345665432 2344555555444
No 167
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=85.75 E-value=4.9 Score=32.55 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=51.2
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhh----CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc-----Cc-CCcCC
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRR----ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV-----AA-RGLDV 172 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~-----~~-~Gldi 172 (233)
...+.++++.++++.-+++.++.+.+ .+..+..++|+.+.......+. ..+|+|+|.. +. ..+++
T Consensus 71 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~ 145 (367)
T 1hv8_A 71 ENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNL 145 (367)
T ss_dssp SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCT
T ss_pred ccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCccc
Confidence 34677999999999999988888875 3678888999988766544443 4789999942 11 12445
Q ss_pred CCccEEE
Q psy14082 173 EDVNTVN 179 (233)
Q Consensus 173 ~~v~~VI 179 (233)
.++++||
T Consensus 146 ~~~~~iI 152 (367)
T 1hv8_A 146 KNVKYFI 152 (367)
T ss_dssp TSCCEEE
T ss_pred ccCCEEE
Confidence 6666655
No 168
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=85.72 E-value=1 Score=32.37 Aligned_cols=18 Identities=6% Similarity=-0.298 Sum_probs=15.7
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.|.-+++.+++|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577889999999999965
No 169
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=85.43 E-value=0.8 Score=37.96 Aligned_cols=53 Identities=13% Similarity=0.031 Sum_probs=33.9
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKE 66 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~ 66 (233)
+..|.=+++.+++|+||| +|++-+...+.. .+..++|++.- .-..|+..++..
T Consensus 43 l~~G~LiiIaG~pG~GKT-t~al~ia~~~a~-------~g~~Vl~fSlE-ms~~ql~~Rlls 95 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKT-SLMMNMVLSALN-------DDRGVAVFSLE-MSAEQLALRALS 95 (338)
T ss_dssp BCTTCEEEEEECTTSCHH-HHHHHHHHHHHH-------TTCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHH-HHHHHHHHHHHH-------cCCeEEEEeCC-CCHHHHHHHHHH
Confidence 345667889999999999 446656555543 25567877643 334555555543
No 170
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=85.36 E-value=0.62 Score=39.09 Aligned_cols=41 Identities=7% Similarity=-0.084 Sum_probs=28.2
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCc
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPT 53 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~Pt 53 (233)
++.|.-+++.+++|+|||. +++.++..+... +..++++..-
T Consensus 71 l~~G~li~I~G~pGsGKTt-lal~la~~~~~~-------g~~vlyi~~E 111 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTT-LALAIVAQAQKA-------GGTCAFIDAE 111 (366)
T ss_dssp EETTSEEEEEESTTSSHHH-HHHHHHHHHHHT-------TCCEEEEESS
T ss_pred ccCCcEEEEEcCCCCChHH-HHHHHHHHHHHC-------CCeEEEEECC
Confidence 4567889999999999994 466666555432 3456666643
No 171
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=85.21 E-value=0.64 Score=38.82 Aligned_cols=40 Identities=8% Similarity=-0.110 Sum_probs=27.9
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcC
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAP 52 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~P 52 (233)
++.|.-+++.+++|+|||.. ++-++..+... +..++++..
T Consensus 60 l~~G~ii~I~G~pGsGKTtL-al~la~~~~~~-------g~~vlyid~ 99 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTL-TLQVIAAAQRE-------GKTCAFIDA 99 (356)
T ss_dssp EETTSEEEEECSTTSSHHHH-HHHHHHHHHHT-------TCCEEEEES
T ss_pred ccCCeEEEEECCCCCCHHHH-HHHHHHHHHHC-------CCeEEEEeC
Confidence 45678899999999999955 55555554432 446777765
No 172
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=85.08 E-value=4.2 Score=33.83 Aligned_cols=72 Identities=11% Similarity=0.127 Sum_probs=51.6
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----cCcC-CcCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----VAAR-GLDVE 173 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~~-Gldi~ 173 (233)
..+.+++|.++++.-+.+..+.+.+. ++.+..++|+.+..+....+.. ..+|+|+|. .+.+ .++..
T Consensus 103 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~ivv~Tp~~l~~~l~~~~~~~~ 178 (410)
T 2j0s_A 103 VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY----GQHVVAGTPGRVFDMIRRRSLRTR 178 (410)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHTTSSCCT
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhc----CCCEEEcCHHHHHHHHHhCCccHh
Confidence 45689999999999999998888653 5788889999887776555442 468999983 2222 34455
Q ss_pred CccEEE
Q psy14082 174 DVNTVN 179 (233)
Q Consensus 174 ~v~~VI 179 (233)
.+++||
T Consensus 179 ~~~~vV 184 (410)
T 2j0s_A 179 AIKMLV 184 (410)
T ss_dssp TCCEEE
T ss_pred heeEEE
Confidence 566554
No 173
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=84.88 E-value=0.84 Score=39.20 Aligned_cols=53 Identities=13% Similarity=0.051 Sum_probs=33.1
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAK 65 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~ 65 (233)
+..|.=+++.|++|+||| +|++-+....... .+..++++..- .-..|+..++.
T Consensus 197 l~~G~l~ii~G~pg~GKT-~lal~ia~~~a~~------~g~~vl~~slE-~~~~~l~~R~~ 249 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKT-AFALTIAQNAALK------EGVGVGIYSLE-MPAAQLTLRMM 249 (444)
T ss_dssp CCTTCEEEEEECTTSCHH-HHHHHHHHHHHHT------TCCCEEEEESS-SCHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHH-HHHHHHHHHHHHh------CCCeEEEEECC-CCHHHHHHHHH
Confidence 455777899999999999 4566565555431 24457777643 23445555543
No 174
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=84.85 E-value=0.8 Score=38.47 Aligned_cols=42 Identities=10% Similarity=-0.020 Sum_probs=29.8
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHH
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTREL 56 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL 56 (233)
.+.++++.++||+|||.. +--++..+.. .+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~-~~~~~~~~~~-------~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFT-AKMLLLREYM-------QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHH-HHHHHHHHHT-------TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHH-HHHHHHHHHH-------CCCEEEEEeCCcCH
Confidence 567899999999999966 4445444432 35677888887664
No 175
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=84.85 E-value=0.53 Score=39.37 Aligned_cols=41 Identities=12% Similarity=-0.072 Sum_probs=28.1
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCc
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPT 53 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~Pt 53 (233)
++.|.=+.+.+|+|+|||.. ++.++..+... +.+++++...
T Consensus 58 i~~G~i~~I~GppGsGKSTL-al~la~~~~~~-------gg~VlyId~E 98 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTL-ALHAIAEAQKM-------GGVAAFIDAE 98 (356)
T ss_dssp EETTEEEEEEESTTSSHHHH-HHHHHHHHHHT-------TCCEEEEESS
T ss_pred ccCCcEEEEECCCCCCHHHH-HHHHHHHHHhc-------CCeEEEEecc
Confidence 45677789999999999954 66666555432 3457777654
No 176
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=84.85 E-value=9.7 Score=28.30 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=31.8
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCC
Q psy14082 44 GPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPK 82 (233)
Q Consensus 44 ~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~ 82 (233)
+.++||.|++++-+..+.+.+... ++.+..+.|+.+.
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~ 90 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK--GVEAVAIHGGKDQ 90 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH--TCCEEEECTTSCH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCH
Confidence 347999999999999999999877 7888999998654
No 177
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=84.84 E-value=0.73 Score=44.61 Aligned_cols=49 Identities=8% Similarity=-0.015 Sum_probs=31.0
Q ss_pred eEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy14082 12 FSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKE 66 (233)
Q Consensus 12 i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~ 66 (233)
++.|..|||||.+.+--+...+... ..+.++|+|||.+ ...+..+.+..
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~-----~~~~~il~lVP~q-~TFt~~~rl~~ 53 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRA-----PFGKPIIFLVPDQ-MTFLMEYELAK 53 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHC-----TTSSCEEEECCGG-GHHHHHHHHTC
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhC-----CCCCcEEEEecCc-ccHHHHHHHHH
Confidence 6789999999987444343333332 2346799999986 55554444443
No 178
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=84.67 E-value=1.2 Score=38.75 Aligned_cols=70 Identities=14% Similarity=0.142 Sum_probs=49.6
Q ss_pred CCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----cCcCC-c-CCCC
Q psy14082 106 AFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----VAARG-L-DVED 174 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~~G-l-di~~ 174 (233)
+.+++|.++++..+......+.+. ++.+..++|+.+...+...+.. ..+|+|+|. .+..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIE----DNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHH----HCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhc----CCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999999888888777654 8999999999876554333322 478999983 22222 3 4556
Q ss_pred ccEEE
Q psy14082 175 VNTVN 179 (233)
Q Consensus 175 v~~VI 179 (233)
+++||
T Consensus 128 ~~~vV 132 (555)
T 3tbk_A 128 FTLMI 132 (555)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 67665
No 179
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=84.25 E-value=1.2 Score=29.51 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=33.4
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKT 141 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 141 (233)
.+..+++++|.+-..+...+..|++.|+++..+.|++.
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 45678999999999999999999999998888888854
No 180
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=84.22 E-value=0.75 Score=38.27 Aligned_cols=40 Identities=15% Similarity=-0.049 Sum_probs=27.2
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcC
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAP 52 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~P 52 (233)
++.|.-+.+.+++|+|||.. ++-++..+.. .+..++++..
T Consensus 58 l~~G~iv~I~G~pGsGKTtL-al~la~~~~~-------~g~~vlyi~~ 97 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTV-ALHAVANAQA-------AGGIAAFIDA 97 (349)
T ss_dssp EETTSEEEEEESTTSSHHHH-HHHHHHHHHH-------TTCCEEEEES
T ss_pred ccCCeEEEEECCCCCCHHHH-HHHHHHHHHh-------CCCeEEEEEC
Confidence 45678899999999999955 5545544433 2445777764
No 181
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=84.05 E-value=0.79 Score=40.27 Aligned_cols=18 Identities=0% Similarity=-0.300 Sum_probs=15.7
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.|..+.+.+|||||||..
T Consensus 259 ~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTT 276 (511)
T ss_dssp TTCCEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577799999999999965
No 182
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=83.94 E-value=4 Score=33.79 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=50.7
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----cCcC-CcCCCC
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----VAAR-GLDVED 174 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~~-Gldi~~ 174 (233)
.+.++++.++++..+++..+.+++. ++.+..++|+......... ..+..+|+|+|. .+.+ ..++.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 163 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSD 163 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCccccc
Confidence 4568999999999998888888653 6788889999876654332 235689999994 2222 355666
Q ss_pred ccEEE
Q psy14082 175 VNTVN 179 (233)
Q Consensus 175 v~~VI 179 (233)
+++||
T Consensus 164 ~~~vI 168 (400)
T 1s2m_A 164 CSLFI 168 (400)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 77665
No 183
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=83.82 E-value=1.1 Score=29.69 Aligned_cols=38 Identities=11% Similarity=0.108 Sum_probs=33.2
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKT 141 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 141 (233)
.+..+++++|.+-..+...+..|++.|+++..+.|++.
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 45678999999998999999999999998888888753
No 184
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=83.81 E-value=1.1 Score=36.49 Aligned_cols=27 Identities=7% Similarity=-0.284 Sum_probs=20.1
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
.++.+++.+|+|+|||.. +-.+...+.
T Consensus 36 ~~~~lll~G~~GtGKT~l-a~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHL-LQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHH-HHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHH-HHHHHHHHH
Confidence 356899999999999966 444555554
No 185
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=83.74 E-value=1.1 Score=30.17 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=33.5
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKT 141 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 141 (233)
.+..+++++|.+-..+...+..|++.|+++..+.||+.
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 45678999999999999999999999999888999854
No 186
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=83.70 E-value=0.86 Score=36.87 Aligned_cols=69 Identities=7% Similarity=0.049 Sum_probs=48.8
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhC-----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc-----Cc--CCcC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRE-----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV-----AA--RGLD 171 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~-----~~--~Gld 171 (233)
..+.+++|.++|+..+.+++..++.. ++.+...+|+.+...+. ....+|+|+|.- +. ..++
T Consensus 160 ~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~ 232 (300)
T 3fmo_B 160 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFID 232 (300)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCC
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCC
Confidence 45568999999999999988887653 46777787775532221 345789999952 21 3577
Q ss_pred CCCccEEE
Q psy14082 172 VEDVNTVN 179 (233)
Q Consensus 172 i~~v~~VI 179 (233)
+.++.++|
T Consensus 233 l~~l~~lV 240 (300)
T 3fmo_B 233 PKKIKVFV 240 (300)
T ss_dssp GGGCSEEE
T ss_pred hhhceEEE
Confidence 78888776
No 187
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=83.65 E-value=1.1 Score=35.91 Aligned_cols=40 Identities=8% Similarity=-0.070 Sum_probs=25.1
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEc
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLA 51 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~ 51 (233)
+..|.=+.+.+++|+|||.. +.-+...+... .|..++++.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl-~~~ia~~~~~~------~G~~v~~~~ 71 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTF-VRQQALQWGTA------MGKKVGLAM 71 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHH-HHHHHHHHHHT------SCCCEEEEE
T ss_pred CCCCeEEEEEeCCCCCHHHH-HHHHHHHHHHH------cCCeEEEEe
Confidence 45677788999999999954 44344433321 233566664
No 188
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=83.51 E-value=1.2 Score=29.89 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=32.6
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDK 140 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 140 (233)
.+..+++++|.+-..+...+..|++.|++...+.||+
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 4567899999999999999999999999988888875
No 189
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=83.41 E-value=1.7 Score=33.60 Aligned_cols=72 Identities=21% Similarity=0.288 Sum_probs=48.6
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----cCcC---CcCC
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----VAAR---GLDV 172 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~~---Gldi 172 (233)
.+.++++.++++.-+.++++.+.+. ++.+..++|+..... .......+..+|+|+|. .+.+ .+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 5568999999999999999988764 567766766532211 11223356689999993 2212 4677
Q ss_pred CCccEEE
Q psy14082 173 EDVNTVN 179 (233)
Q Consensus 173 ~~v~~VI 179 (233)
.+++++|
T Consensus 174 ~~~~~lV 180 (245)
T 3dkp_A 174 ASVEWLV 180 (245)
T ss_dssp TTCCEEE
T ss_pred ccCcEEE
Confidence 7888776
No 190
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=83.33 E-value=0.5 Score=35.01 Aligned_cols=19 Identities=0% Similarity=-0.440 Sum_probs=15.9
Q ss_pred CCCCceeEecCCCCCchHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~ 24 (233)
..|+-+.+.+|+|+|||..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3577788999999999965
No 191
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=83.26 E-value=4.3 Score=32.52 Aligned_cols=69 Identities=19% Similarity=0.205 Sum_probs=50.1
Q ss_pred CCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc-----Cc-CCcCCCCc
Q psy14082 106 AFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV-----AA-RGLDVEDV 175 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~-----~~-~Gldi~~v 175 (233)
+.++++.++++.-+++.++.+++. +..+..++|+.+...+...+ . ..+|+|+|.. .. ..++..++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV---R--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH---T--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc---C--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 678999999999999998888753 57888999998877654433 2 3789999942 12 23456667
Q ss_pred cEEE
Q psy14082 176 NTVN 179 (233)
Q Consensus 176 ~~VI 179 (233)
++||
T Consensus 131 ~~iV 134 (337)
T 2z0m_A 131 EIVI 134 (337)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 7665
No 192
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=83.19 E-value=0.8 Score=36.36 Aligned_cols=26 Identities=8% Similarity=-0.313 Sum_probs=19.0
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVH 32 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~ 32 (233)
..++.+++.+|+|+|||.. +-.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~l-a~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLL-AKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHH-HHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHH-HHHHHHH
Confidence 3467799999999999966 4444443
No 193
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=82.91 E-value=0.83 Score=39.33 Aligned_cols=52 Identities=10% Similarity=0.008 Sum_probs=32.3
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVA 64 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~ 64 (233)
+..|.=+++.+++|+|||. +++-+...+... .+..++++... .-..|+..++
T Consensus 200 l~~G~liiI~G~pG~GKTt-l~l~ia~~~~~~------~g~~Vl~~s~E-~s~~~l~~r~ 251 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTA-FALNIAQNVATK------TNENVAIFSLE-MSAQQLVMRM 251 (454)
T ss_dssp BCTTCEEEEECCTTSCHHH-HHHHHHHHHHHH------SSCCEEEEESS-SCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHH-HHHHHHHHHHHh------CCCcEEEEECC-CCHHHHHHHH
Confidence 4567778999999999994 456555555432 24457777643 2234555544
No 194
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=82.89 E-value=0.7 Score=38.16 Aligned_cols=25 Identities=8% Similarity=-0.157 Sum_probs=19.8
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
++.+++.+|+|+|||.. +-.+...+
T Consensus 70 ~~~vLl~GppGtGKT~l-a~~la~~l 94 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAI-AMGMAQAL 94 (368)
T ss_dssp TCEEEEEESTTSSHHHH-HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHh
Confidence 67899999999999976 55555555
No 195
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=82.78 E-value=2.6 Score=40.92 Aligned_cols=60 Identities=7% Similarity=-0.145 Sum_probs=41.9
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccC----CCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQE----PVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~----~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
.|.. ++.|+-|||||.+-+-=++..+.... ...+-.-.+.|+++=|+.-|..+.+++.+.
T Consensus 16 ~g~~-lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 16 QGER-LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp SSCE-EEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCE-EEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 4555 89999999999885555555554321 001122357999999999888888888775
No 196
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=82.77 E-value=11 Score=32.95 Aligned_cols=23 Identities=9% Similarity=-0.028 Sum_probs=19.4
Q ss_pred CCCCCCCCceeEecCCCCCchHH
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~ 24 (233)
+-++-+|+-..+.++.|+|||..
T Consensus 157 l~PigrGQR~~Ifg~~g~GKT~L 179 (507)
T 1fx0_A 157 MIPVGRGQRELIIGDRQTGKTAV 179 (507)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHH
T ss_pred ccccccCCEEEEecCCCCCccHH
Confidence 34567889999999999999976
No 197
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=82.47 E-value=0.88 Score=36.76 Aligned_cols=25 Identities=4% Similarity=-0.399 Sum_probs=18.5
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAV 31 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~ 31 (233)
..++.+++.+|+|+|||.. +-.+..
T Consensus 47 ~~~~~vLL~Gp~GtGKT~l-a~ala~ 71 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLL-AKAIAN 71 (301)
T ss_dssp CCCSEEEEECSSSSSHHHH-HHHHHH
T ss_pred CCCceEEEECCCCcCHHHH-HHHHHH
Confidence 3467799999999999976 333443
No 198
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=82.26 E-value=0.89 Score=37.48 Aligned_cols=45 Identities=11% Similarity=-0.023 Sum_probs=29.4
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTREL 56 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL 56 (233)
++.| =+.+.+++|+|||.. ++.++...... ..+.+++++..-..+
T Consensus 26 l~~G-iteI~G~pGsGKTtL-~Lq~~~~~~~~-----g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNF-GLTMVSSYMRQ-----YPDAVCLFYDSEFGI 70 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHH-HHHHHHHHHHH-----CTTCEEEEEESSCCC
T ss_pred CcCC-eEEEECCCCCCHHHH-HHHHHHHHHhc-----CCCceEEEEeccchh
Confidence 3456 478999999999955 55555555432 225578887765444
No 199
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=82.00 E-value=1.2 Score=34.67 Aligned_cols=28 Identities=21% Similarity=0.040 Sum_probs=19.9
Q ss_pred CCC-ceeEecCCCCCchHHhHHHHHHhhhc
Q psy14082 7 SGC-QNFSKITNYLLSPPQYMLPAAVHISH 35 (233)
Q Consensus 7 ~g~-d~i~~a~tGsGKT~~~~lp~l~~l~~ 35 (233)
+|+ .+++.+++|+|||.+ ++.+...+..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~-a~~la~~l~~ 32 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYA-MLQAAHAQLR 32 (228)
T ss_dssp CCCEEEEEESSTTSSHHHH-HHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHH-HHHHHHHHHH
Confidence 344 488899999999977 5555555554
No 200
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=81.92 E-value=0.64 Score=36.62 Aligned_cols=18 Identities=0% Similarity=-0.509 Sum_probs=15.7
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.+..+++.+++|+|||..
T Consensus 28 ~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELI 45 (265)
T ss_dssp SCSCEEEECCTTSCHHHH
T ss_pred CCCCEEEECCCCCcHHHH
Confidence 467899999999999965
No 201
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=81.71 E-value=5 Score=33.26 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=51.0
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----cCcC-CcCCCC
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----VAAR-GLDVED 174 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~~-Gldi~~ 174 (233)
.+.+++|.++++..+.+..+.+++. +..+...+|+.+.... .+.+..+..+|+|+|. .+.+ .++...
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 5678999999999999888888754 5677888888765544 4455667889999994 2222 244555
Q ss_pred ccEEE
Q psy14082 175 VNTVN 179 (233)
Q Consensus 175 v~~VI 179 (233)
+++||
T Consensus 184 ~~~vV 188 (414)
T 3eiq_A 184 IKMFV 188 (414)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 66554
No 202
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=81.46 E-value=0.66 Score=38.50 Aligned_cols=25 Identities=8% Similarity=-0.217 Sum_probs=19.0
Q ss_pred CceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
.-+++.+|||||||.. .+-+..++.
T Consensus 41 ~lIvI~GPTgsGKTtL-a~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRL-SIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHH-HHHHHTTSC
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHCC
Confidence 3588999999999966 565666553
No 203
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=81.28 E-value=10 Score=33.23 Aligned_cols=21 Identities=10% Similarity=-0.053 Sum_probs=18.2
Q ss_pred CCCCCCceeEecCCCCCchHH
Q psy14082 4 PSESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 4 ~~~~g~d~i~~a~tGsGKT~~ 24 (233)
++-+|+-..+.++.|+|||..
T Consensus 171 PigrGQR~~I~g~~g~GKT~L 191 (515)
T 2r9v_A 171 PIGRGQRELIIGDRQTGKTAI 191 (515)
T ss_dssp CEETTCBEEEEEETTSSHHHH
T ss_pred ccccCCEEEEEcCCCCCccHH
Confidence 456788999999999999976
No 204
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=81.18 E-value=1 Score=36.06 Aligned_cols=25 Identities=4% Similarity=-0.366 Sum_probs=18.4
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
+..+++.+|+|+|||.. +-.+...+
T Consensus 50 ~~~vll~G~~GtGKT~l-a~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEI-ARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHH-HHHHHHHH
T ss_pred CceEEEECCCCCCHHHH-HHHHHHHh
Confidence 56799999999999966 33344433
No 205
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=81.17 E-value=0.67 Score=33.92 Aligned_cols=17 Identities=0% Similarity=-0.439 Sum_probs=14.5
Q ss_pred CCceeEecCCCCCchHH
Q psy14082 8 GCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~ 24 (233)
++-+++.+++|||||..
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45689999999999965
No 206
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=81.16 E-value=0.58 Score=37.24 Aligned_cols=19 Identities=0% Similarity=-0.384 Sum_probs=15.7
Q ss_pred CCCCceeEecCCCCCchHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~ 24 (233)
..|.-+.+.+|||||||..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp CSSEEEEEECSTTCSHHHH
T ss_pred CCCCEEEEECCCCccHHHH
Confidence 4566788999999999965
No 207
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.14 E-value=5.8 Score=33.90 Aligned_cols=25 Identities=4% Similarity=-0.379 Sum_probs=19.1
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.+-++..+|+|||||+. +-++...+
T Consensus 206 prGiLL~GPPGtGKT~l-akAiA~~~ 230 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTML-VKAVANST 230 (428)
T ss_dssp CCEEEEESCTTTTHHHH-HHHHHHHH
T ss_pred CceEEEECCCCCCHHHH-HHHHHHHh
Confidence 45689999999999976 55555544
No 208
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=81.08 E-value=0.85 Score=35.93 Aligned_cols=21 Identities=5% Similarity=-0.167 Sum_probs=15.0
Q ss_pred eeEecCCCCCchHHhHHHHHHh
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVH 32 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~ 32 (233)
+++.++||||||.. +-.+...
T Consensus 4 i~I~G~~GSGKSTl-a~~La~~ 24 (253)
T 2ze6_A 4 HLIYGPTCSGKTDM-AIQIAQE 24 (253)
T ss_dssp EEEECCTTSSHHHH-HHHHHHH
T ss_pred EEEECCCCcCHHHH-HHHHHhc
Confidence 57899999999955 4444443
No 209
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=81.03 E-value=0.87 Score=36.25 Aligned_cols=29 Identities=14% Similarity=-0.101 Sum_probs=20.5
Q ss_pred CCCCCCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 4 PSESGCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 4 ~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
-+..|.=+.+.+++|+|||.. +.-++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl-~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSML-ALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHH-HHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHH-HHHHHHHH
Confidence 345788899999999999955 44344333
No 210
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=81.01 E-value=0.68 Score=36.15 Aligned_cols=26 Identities=4% Similarity=-0.358 Sum_probs=18.4
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
..+.+++.+|+|+|||.. +-.+...+
T Consensus 38 ~~~~vll~G~~GtGKT~l-a~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLL-AKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHH-HHHHHHHH
T ss_pred CCceEEEECCCCCCHHHH-HHHHHHHh
Confidence 356689999999999966 33344433
No 211
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=80.87 E-value=2 Score=35.12 Aligned_cols=61 Identities=13% Similarity=-0.026 Sum_probs=34.2
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHH-HHHHHHHHHHh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTREL-AQQIQTVAKEF 67 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL-~~Q~~~~~~~~ 67 (233)
+..|.-+++.+++|+|||.. ++-++....... .....+..++++.-...+ ..++.+.++.+
T Consensus 104 l~~G~i~~i~G~~GsGKT~l-a~~la~~~~~~~-~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQL-CHQLSVNVQLPP-EKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp EETTSEEEEEESTTSSHHHH-HHHHHHHTTSCG-GGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHhHH-HHHHHHHHhccc-ccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 35678899999999999955 444443332110 000114577887654322 44555555555
No 212
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=80.69 E-value=13 Score=32.42 Aligned_cols=22 Identities=9% Similarity=-0.093 Sum_probs=19.0
Q ss_pred CCCCCCCceeEecCCCCCchHH
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~ 24 (233)
-++-+|+-..+.++.|+|||..
T Consensus 157 ~PigrGQR~~Ifg~~g~GKT~L 178 (502)
T 2qe7_A 157 IPIGRGQRELIIGDRQTGKTTI 178 (502)
T ss_dssp SCCBTTCBCEEEECSSSCHHHH
T ss_pred cccccCCEEEEECCCCCCchHH
Confidence 3567889999999999999976
No 213
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=80.68 E-value=0.84 Score=34.95 Aligned_cols=24 Identities=8% Similarity=-0.132 Sum_probs=17.6
Q ss_pred CCCceeEecCCCCCchHHhHHHHHH
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAV 31 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~ 31 (233)
.|+-+++.++||+|||.. ++.+.+
T Consensus 33 ~g~~ilI~GpsGsGKStL-A~~La~ 56 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET-ALELVQ 56 (205)
T ss_dssp TTEEEEEECCCTTTTHHH-HHHHHT
T ss_pred CCEEEEEECCCCCCHHHH-HHHHHH
Confidence 366689999999999855 444443
No 214
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=80.65 E-value=1.1 Score=33.40 Aligned_cols=23 Identities=4% Similarity=-0.174 Sum_probs=17.3
Q ss_pred ceeEecCCCCCchHHhHHHHHHhh
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.+++.+++|+|||.. +-.+...+
T Consensus 40 ~~ll~G~~G~GKT~l-~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTAT-AIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHH-HHHHHHHH
T ss_pred eEEEECCCCCCHHHH-HHHHHHHH
Confidence 499999999999965 44455544
No 215
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=80.59 E-value=0.64 Score=34.46 Aligned_cols=20 Identities=5% Similarity=-0.321 Sum_probs=16.7
Q ss_pred CCCCCceeEecCCCCCchHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~ 24 (233)
+..|.-+++.+++|||||..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 45677789999999999965
No 216
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=80.57 E-value=0.77 Score=34.95 Aligned_cols=19 Identities=0% Similarity=-0.368 Sum_probs=16.7
Q ss_pred CCCCceeEecCCCCCchHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~ 24 (233)
..|+-+++.+|+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 5788899999999999965
No 217
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=80.47 E-value=0.66 Score=37.15 Aligned_cols=23 Identities=4% Similarity=-0.434 Sum_probs=17.6
Q ss_pred CCceeEecCCCCCchHHhHHHHHH
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAV 31 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~ 31 (233)
++.+++.+|+|+|||.. +-.+..
T Consensus 54 ~~~vll~Gp~GtGKT~l-a~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLL-ARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHH-HHHHHH
T ss_pred CCeEEEECcCCCCHHHH-HHHHHH
Confidence 57899999999999966 333443
No 218
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=80.33 E-value=2.3 Score=32.80 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=26.8
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHH
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRE 55 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~Ptre 55 (233)
|+=.+..++-|||||.+ ++-.+.+... .+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~-lL~~a~r~~~-------~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEE-LIRRVRRTQF-------AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHH-HHHHHHHHHH-------TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHH-HHHHHHHHHH-------CCCEEEEEEeccC
Confidence 44345677779999977 5556655543 3678999999753
No 219
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=80.21 E-value=0.87 Score=37.42 Aligned_cols=24 Identities=4% Similarity=-0.283 Sum_probs=17.6
Q ss_pred CceeEecCCCCCchHHhHHHHHHhh
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.-+++.+|||||||.. +..+.+.+
T Consensus 4 ~~i~i~GptgsGKt~l-a~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKT-SVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHH-HHHHHHTT
T ss_pred cEEEEECCCcCCHHHH-HHHHHHhC
Confidence 3467899999999966 55566554
No 220
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=80.06 E-value=23 Score=30.89 Aligned_cols=30 Identities=7% Similarity=-0.127 Sum_probs=22.1
Q ss_pred CCCCCCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 4 PSESGCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 4 ~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
++-+|+-..+.++.|+|||...+=.+.+..
T Consensus 158 PigrGQR~~I~g~~g~GKT~Lal~~I~~q~ 187 (510)
T 2ck3_A 158 PIGRGQRELIIGDRQTGKTSIAIDTIINQK 187 (510)
T ss_dssp CCBTTCBCEEEESTTSSHHHHHHHHHHHTH
T ss_pred ccccCCEEEEecCCCCCchHHHHHHHHHHH
Confidence 567788999999999999977333344443
No 221
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=79.96 E-value=1.8 Score=28.23 Aligned_cols=35 Identities=14% Similarity=0.112 Sum_probs=31.1
Q ss_pred CeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCC
Q psy14082 107 FKVIVFVETKKKVEDITRALRRERHSAICIHGDKT 141 (233)
Q Consensus 107 ~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 141 (233)
.+++++|.+-..+...+..|++.|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999999999999999999998777888864
No 222
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=79.72 E-value=0.74 Score=34.75 Aligned_cols=18 Identities=0% Similarity=-0.400 Sum_probs=14.5
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.|+-+.+.+|+|+|||..
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477889999999999965
No 223
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=79.72 E-value=0.95 Score=37.10 Aligned_cols=23 Identities=4% Similarity=-0.207 Sum_probs=17.0
Q ss_pred ceeEecCCCCCchHHhHHHHHHhh
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
=+++.+|||||||.. +.-+.+++
T Consensus 12 ~i~i~GptgsGKt~l-a~~La~~~ 34 (316)
T 3foz_A 12 AIFLMGPTASGKTAL-AIELRKIL 34 (316)
T ss_dssp EEEEECCTTSCHHHH-HHHHHHHS
T ss_pred EEEEECCCccCHHHH-HHHHHHhC
Confidence 367899999999966 55555544
No 224
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=79.70 E-value=0.97 Score=37.51 Aligned_cols=23 Identities=4% Similarity=-0.272 Sum_probs=16.9
Q ss_pred ceeEecCCCCCchHHhHHHHHHhh
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
-+++.+|||||||.. +.-+...+
T Consensus 9 lI~I~GptgSGKTtl-a~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTEL-SIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHHT
T ss_pred eEEEECCCcCcHHHH-HHHHHHHc
Confidence 467899999999955 55555554
No 225
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=79.69 E-value=1.9 Score=35.54 Aligned_cols=25 Identities=8% Similarity=-0.375 Sum_probs=18.8
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
++.+++.+|+|+|||.. +-.+...+
T Consensus 45 ~~~vll~G~~G~GKT~l-a~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFV-SKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHH-HHHHHHHH
T ss_pred CCcEEEECCCCCCHHHH-HHHHHHHH
Confidence 45699999999999966 44455554
No 226
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=79.62 E-value=0.8 Score=38.01 Aligned_cols=25 Identities=4% Similarity=-0.384 Sum_probs=18.7
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVH 32 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~ 32 (233)
.+..++..+|||+|||.. +-.+...
T Consensus 50 ~~~~vll~GppGtGKT~l-a~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL-AETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHH-HHHHHHH
T ss_pred CCCeEEEECCCCCCHHHH-HHHHHHH
Confidence 467899999999999976 3334433
No 227
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=79.59 E-value=1.7 Score=37.27 Aligned_cols=49 Identities=4% Similarity=-0.105 Sum_probs=29.3
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTV 63 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~ 63 (233)
++.+++.+|+|+|||.. +-.+...+... ..+..++++.. .++..++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtL-a~aia~~l~~~-----~~~~~v~~v~~-~~~~~~~~~~ 178 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHL-LQSIGNYVVQN-----EPDLRVMYITS-EKFLNDLVDS 178 (440)
T ss_dssp SCCEEEECSSSSSHHHH-HHHHHHHHHHH-----CCSSCEEEEEH-HHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHHh-----CCCCeEEEeeH-HHHHHHHHHH
Confidence 56799999999999966 44455555433 22344555443 3454444433
No 228
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=79.58 E-value=0.92 Score=33.63 Aligned_cols=18 Identities=11% Similarity=-0.167 Sum_probs=15.8
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.+..+++.+++|||||..
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477799999999999965
No 229
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=79.51 E-value=0.76 Score=34.55 Aligned_cols=25 Identities=8% Similarity=-0.327 Sum_probs=18.4
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVH 32 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~ 32 (233)
.+.-+++.+++|||||.. +-.+...
T Consensus 24 ~~~~i~l~G~~GsGKsTl-~~~La~~ 48 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTL-GKAFARK 48 (199)
T ss_dssp CCCEEEEECCTTSCHHHH-HHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHH-HHHHHHH
Confidence 467899999999999966 3334433
No 230
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=79.41 E-value=0.81 Score=34.28 Aligned_cols=19 Identities=11% Similarity=-0.181 Sum_probs=16.1
Q ss_pred CCCCceeEecCCCCCchHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~ 24 (233)
..|.-+.+.+++|||||..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4577888999999999965
No 231
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=79.33 E-value=0.7 Score=36.56 Aligned_cols=25 Identities=4% Similarity=-0.295 Sum_probs=18.0
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVH 32 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~ 32 (233)
....+++.+|+|+|||.. +-.+...
T Consensus 63 ~~~~vLl~G~~GtGKT~l-a~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTAL-AAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHH-HHHHHHH
T ss_pred CCeEEEEECCCCCcHHHH-HHHHHHH
Confidence 345789999999999976 3334443
No 232
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=79.33 E-value=19 Score=31.50 Aligned_cols=21 Identities=10% Similarity=-0.048 Sum_probs=18.3
Q ss_pred CCCCCCceeEecCCCCCchHH
Q psy14082 4 PSESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 4 ~~~~g~d~i~~a~tGsGKT~~ 24 (233)
++-+|+-..+.++.|+|||..
T Consensus 158 PigrGQR~~Ifg~~g~GKT~l 178 (513)
T 3oaa_A 158 PIGRGQRELIIGDRQTGKTAL 178 (513)
T ss_dssp CCBTTCBCEEEESSSSSHHHH
T ss_pred ccccCCEEEeecCCCCCcchH
Confidence 566788899999999999976
No 233
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=79.33 E-value=1.1 Score=36.90 Aligned_cols=26 Identities=0% Similarity=-0.305 Sum_probs=19.5
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.+..+++.+|+|+|||.. +-.+...+
T Consensus 43 ~~~~vll~G~~G~GKT~l-~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAV-ARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHH-HHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHH-HHHHHHHH
Confidence 466799999999999966 44455544
No 234
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=79.26 E-value=2.5 Score=38.18 Aligned_cols=109 Identities=13% Similarity=0.099 Sum_probs=79.0
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCC
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTP 81 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~ 81 (233)
+|.++.|+|+++.+|||+|||++|++|+++.+... +
T Consensus 22 i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~--------~------------------------------------ 57 (696)
T 2ykg_A 22 ALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF--------P------------------------------------ 57 (696)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHS--------C------------------------------------
T ss_pred HHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhC--------c------------------------------------
Confidence 45667899999999999999999999998766321 0
Q ss_pred CCCeeEEeccchhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCC
Q psy14082 82 KGPQDCLPLHRFVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKA 157 (233)
Q Consensus 82 ~~~~~lv~l~r~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 157 (233)
...+.+++|.++++..+......+++. ++++..++|+.+...+...+.. ..
T Consensus 58 ---------------------~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~ 112 (696)
T 2ykg_A 58 ---------------------QGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVE----NN 112 (696)
T ss_dssp ---------------------TTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHH----TC
T ss_pred ---------------------cCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhcc----CC
Confidence 012358999999998888888887654 7899999999865443333322 47
Q ss_pred CEEEecc-----cCcCC-c-CCCCccEEE
Q psy14082 158 PILVATD-----VAARG-L-DVEDVNTVN 179 (233)
Q Consensus 158 ~iLv~T~-----~~~~G-l-di~~v~~VI 179 (233)
+|+|+|. .+..+ + ++.++++||
T Consensus 113 ~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vV 141 (696)
T 2ykg_A 113 DIIILTPQILVNNLKKGTIPSLSIFTLMI 141 (696)
T ss_dssp SEEEECHHHHHHHHHTTSSCCGGGCSEEE
T ss_pred CEEEECHHHHHHHHhcCcccccccccEEE
Confidence 9999994 22233 3 566777766
No 235
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=79.00 E-value=1.2 Score=36.32 Aligned_cols=25 Identities=4% Similarity=-0.351 Sum_probs=18.5
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.+.+++.+|+|+|||.. +-.+...+
T Consensus 51 ~~~vLl~GppGtGKT~l-a~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYL-AKAVATEA 75 (322)
T ss_dssp CCEEEEECSSSSCHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCcHHHH-HHHHHHHH
Confidence 45699999999999976 44454443
No 236
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=78.86 E-value=0.8 Score=33.73 Aligned_cols=17 Identities=0% Similarity=-0.478 Sum_probs=14.7
Q ss_pred CCceeEecCCCCCchHH
Q psy14082 8 GCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~ 24 (233)
++.+++.+++|||||..
T Consensus 5 ~~~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSV 21 (185)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 45789999999999965
No 237
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=78.85 E-value=1.3 Score=38.64 Aligned_cols=54 Identities=7% Similarity=-0.004 Sum_probs=34.4
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKE 66 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~ 66 (233)
+..|.=+++.+++|+|||. +++-++..+..+ .+..+++++- .+-..|+..++..
T Consensus 239 l~~G~l~li~G~pG~GKT~-lal~~a~~~a~~------~g~~vl~~s~-E~s~~~l~~r~~~ 292 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMST-FVRQQALQWGTA------MGKKVGLAML-EESVEETAEDLIG 292 (503)
T ss_dssp CCTTCEEEEEESSCHHHHH-HHHHHHHHHTTT------SCCCEEEEES-SSCHHHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchH-HHHHHHHHHHHh------cCCcEEEEec-cCCHHHHHHHHHH
Confidence 4567778999999999995 456555555431 1456777764 2335566665543
No 238
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=78.66 E-value=0.83 Score=34.68 Aligned_cols=18 Identities=6% Similarity=-0.263 Sum_probs=15.5
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.|.=+++.+|+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 477788999999999965
No 239
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=78.62 E-value=1.2 Score=36.39 Aligned_cols=25 Identities=4% Similarity=-0.436 Sum_probs=18.5
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.+.+++.+|+|+|||.. +-.+...+
T Consensus 45 ~~~iLL~GppGtGKT~l-a~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYL-AKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHH-HHHHHHHT
T ss_pred CceEEEECCCCccHHHH-HHHHHHHc
Confidence 36799999999999966 44454443
No 240
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.61 E-value=1.4 Score=37.93 Aligned_cols=25 Identities=4% Similarity=-0.328 Sum_probs=19.2
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.+-++..+|+|||||+. +-++...+
T Consensus 215 prGvLLyGPPGTGKTll-AkAiA~e~ 239 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLL-ARACAAQT 239 (434)
T ss_dssp CCEEEEESCTTSSHHHH-HHHHHHHH
T ss_pred CCeeEEECcCCCCHHHH-HHHHHHHh
Confidence 56799999999999976 55555544
No 241
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=78.57 E-value=4.8 Score=37.47 Aligned_cols=55 Identities=11% Similarity=-0.106 Sum_probs=43.7
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhh----CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRR----ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD 164 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~ 164 (233)
..+.+++|.++|+.-+...++.+.. .|+++.++.|+++.+.|.... ..+|+|+|+
T Consensus 113 l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 113 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 3467899999999999887777654 589999999999987665443 378999995
No 242
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=78.57 E-value=1.9 Score=31.85 Aligned_cols=23 Identities=4% Similarity=-0.425 Sum_probs=15.6
Q ss_pred eeEecCCCCCchHHhHHHHHHhhh
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
+.+.+++|||||.. +.-++..+.
T Consensus 7 i~i~G~sGsGKTTl-~~~L~~~l~ 29 (169)
T 1xjc_A 7 WQVVGYKHSGKTTL-MEKWVAAAV 29 (169)
T ss_dssp EEEECCTTSSHHHH-HHHHHHHHH
T ss_pred EEEECCCCCCHHHH-HHHHHHhhH
Confidence 56778899999954 444555543
No 243
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=78.56 E-value=1.9 Score=35.10 Aligned_cols=14 Identities=0% Similarity=-0.475 Sum_probs=11.9
Q ss_pred eeEecCCCCCchHH
Q psy14082 11 NFSKITNYLLSPPQ 24 (233)
Q Consensus 11 ~i~~a~tGsGKT~~ 24 (233)
+++.++.|||||..
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 56789999999965
No 244
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=78.37 E-value=5.2 Score=37.23 Aligned_cols=86 Identities=9% Similarity=-0.018 Sum_probs=67.0
Q ss_pred CCCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy14082 1 MLPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGT 80 (233)
Q Consensus 1 aip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~ 80 (233)
++|.++.|+ |++|+||+|||++|++|+ .+..+
T Consensus 91 ~ip~ll~G~--Iaea~TGeGKTlaf~LP~---------------------------------~l~aL------------- 122 (844)
T 1tf5_A 91 GGVALHDGN--IAEMKTGEGKTLTSTLPV---------------------------------YLNAL------------- 122 (844)
T ss_dssp HHHHHHTTS--EEECCTTSCHHHHHHHHH---------------------------------HHHHT-------------
T ss_pred hhHHHhCCC--EEEccCCcHHHHHHHHHH---------------------------------HHHHH-------------
Confidence 367788998 999999999999998753 11111
Q ss_pred CCCCeeEEeccchhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhh----CCCeeEEEeCCCCHHHHHHHHHHhhCCC
Q psy14082 81 PKGPQDCLPLHRFVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRR----ERHSAICIHGDKTQQDRDYVLNDFRQGK 156 (233)
Q Consensus 81 ~~~~~~lv~l~r~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 156 (233)
.+.+++|.++|+.-+...++.+.. .|+++.++.|+++.+.|.... .
T Consensus 123 ------------------------~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~ 172 (844)
T 1tf5_A 123 ------------------------TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------A 172 (844)
T ss_dssp ------------------------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------H
T ss_pred ------------------------cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------C
Confidence 235789999999999888777754 589999999999988766543 3
Q ss_pred CCEEEecc
Q psy14082 157 APILVATD 164 (233)
Q Consensus 157 ~~iLv~T~ 164 (233)
.+|+++|+
T Consensus 173 ~dIv~gTp 180 (844)
T 1tf5_A 173 ADITYSTN 180 (844)
T ss_dssp SSEEEEEH
T ss_pred CCEEEECc
Confidence 68999995
No 245
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=78.24 E-value=2.4 Score=37.20 Aligned_cols=27 Identities=4% Similarity=-0.263 Sum_probs=19.8
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
.+-++++.++||||||.+ +-.++..++
T Consensus 166 ~~pHlLIaG~TGSGKSt~-L~~li~sLl 192 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVG-VNAMILSML 192 (512)
T ss_dssp GSCSEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHH-HHHHHHHHH
Confidence 467899999999999966 444554333
No 246
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=78.14 E-value=1 Score=36.58 Aligned_cols=18 Identities=6% Similarity=-0.295 Sum_probs=15.8
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.+..+++.++||+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 467799999999999966
No 247
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=78.11 E-value=1 Score=33.95 Aligned_cols=19 Identities=0% Similarity=-0.484 Sum_probs=16.2
Q ss_pred CCCCceeEecCCCCCchHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~ 24 (233)
..|.-+++.+++|||||..
T Consensus 10 ~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCEEEECCTTSCHHHH
T ss_pred ccCCEEEEECCCCCCHHHH
Confidence 4577889999999999965
No 248
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=78.09 E-value=1.2 Score=37.16 Aligned_cols=26 Identities=0% Similarity=-0.265 Sum_probs=18.2
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
|.-+.+.+|||||||.. +-.++..+.
T Consensus 123 ~g~i~I~GptGSGKTTl-L~~l~g~~~ 148 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTT-LAAMLDYLN 148 (356)
T ss_dssp SEEEEEECSTTSCHHHH-HHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHH-HHHHHhccc
Confidence 34688999999999965 444555443
No 249
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=77.98 E-value=1.8 Score=36.89 Aligned_cols=25 Identities=0% Similarity=-0.219 Sum_probs=17.9
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
|.-+.+.+|||||||.. +-.++..+
T Consensus 167 ggii~I~GpnGSGKTTl-L~allg~l 191 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTT-LYAGLQEL 191 (418)
T ss_dssp SEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHHHhhc
Confidence 44578999999999965 44455544
No 250
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=77.92 E-value=1.3 Score=38.18 Aligned_cols=26 Identities=12% Similarity=-0.082 Sum_probs=19.7
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.++.++..+|+|+|||.. +-.+...+
T Consensus 62 ~~~~iLl~GppGtGKT~l-a~ala~~l 87 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTAL-ALAIAQEL 87 (456)
T ss_dssp TTCEEEEECCTTSSHHHH-HHHHHHHH
T ss_pred CCCeEEEECCCcCCHHHH-HHHHHHHh
Confidence 357799999999999966 45555554
No 251
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=77.90 E-value=0.82 Score=32.96 Aligned_cols=14 Identities=0% Similarity=-0.510 Sum_probs=12.2
Q ss_pred eeEecCCCCCchHH
Q psy14082 11 NFSKITNYLLSPPQ 24 (233)
Q Consensus 11 ~i~~a~tGsGKT~~ 24 (233)
+++.+++|||||..
T Consensus 4 I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 4 ILITGMPGSGKSEF 17 (179)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999965
No 252
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.87 E-value=1.6 Score=37.11 Aligned_cols=25 Identities=8% Similarity=-0.346 Sum_probs=19.3
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.+-++..+|+|||||+. +-++...+
T Consensus 182 prGvLL~GPPGTGKTll-AkAiA~e~ 206 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLL-ARAVAHHT 206 (405)
T ss_dssp CCCEEEESCSSSSHHHH-HHHHHHHH
T ss_pred CCceEEeCCCCCCHHHH-HHHHHHhh
Confidence 46799999999999976 55555544
No 253
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=77.78 E-value=5.9 Score=28.80 Aligned_cols=38 Identities=13% Similarity=0.013 Sum_probs=32.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCC
Q psy14082 43 DGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPK 82 (233)
Q Consensus 43 ~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~ 82 (233)
.+.++||.|++++-+..+.+.+... ++.+..++|+.+.
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~ 70 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD--GHQVSLLSGELTV 70 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECSSCCH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCH
Confidence 3568999999999999999988876 6788899998654
No 254
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=77.77 E-value=1.1 Score=33.85 Aligned_cols=22 Identities=5% Similarity=-0.289 Sum_probs=17.8
Q ss_pred CCCCCCCceeEecCCCCCchHH
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~ 24 (233)
|.+..+.-+.+.+++|||||..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHH
Confidence 5566677788999999999965
No 255
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=77.75 E-value=0.9 Score=35.49 Aligned_cols=14 Identities=0% Similarity=-0.434 Sum_probs=12.9
Q ss_pred eeEecCCCCCchHH
Q psy14082 11 NFSKITNYLLSPPQ 24 (233)
Q Consensus 11 ~i~~a~tGsGKT~~ 24 (233)
+++.+|+|+|||..
T Consensus 52 ~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 52 VLLVGPPGVGKTHL 65 (254)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 89999999999965
No 256
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=77.67 E-value=1.4 Score=36.95 Aligned_cols=27 Identities=4% Similarity=-0.280 Sum_probs=18.8
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
..|.-+.+.+|||||||.. +-.++..+
T Consensus 134 ~~g~~i~ivG~~GsGKTTl-l~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT-IASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH-HHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHH-HHHHHhhc
Confidence 3466788999999999965 33344433
No 257
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=77.65 E-value=1.4 Score=32.93 Aligned_cols=45 Identities=9% Similarity=-0.009 Sum_probs=25.2
Q ss_pred eeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
+++.+++||||| +|+.-+.. . +..+++++.....-..+.+++...
T Consensus 2 ilV~Gg~~SGKS-~~A~~la~----------~-~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKS-RHAEALIG----------D-APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHH-HHHHHHHC----------S-CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHH-HHHHHHHh----------c-CCCeEEEecCCCCCHHHHHHHHHH
Confidence 578899999999 55543332 1 334788887654444444444444
No 258
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=77.60 E-value=0.9 Score=33.45 Aligned_cols=18 Identities=6% Similarity=-0.296 Sum_probs=14.7
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.|.-+++.+++|||||..
T Consensus 2 ~~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp -CCEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356789999999999965
No 259
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=77.52 E-value=1 Score=36.33 Aligned_cols=24 Identities=8% Similarity=-0.385 Sum_probs=17.6
Q ss_pred CCceeEecCCCCCchHHhHHHHHHh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVH 32 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~ 32 (233)
+..+++.+++|+|||.. +-.+.+.
T Consensus 38 ~~~vll~G~~GtGKT~l-a~~i~~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTL-AHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHH-HHHHHHH
T ss_pred CCcEEEECCCCCCHHHH-HHHHHHH
Confidence 46799999999999966 3334433
No 260
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=77.13 E-value=1.6 Score=32.68 Aligned_cols=72 Identities=19% Similarity=0.223 Sum_probs=44.1
Q ss_pred CCCCeEEEEecchhHHHH-HHHHHhh---CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEeccc-----CcC------
Q psy14082 104 NPAFKVIVFVETKKKVED-ITRALRR---ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDV-----AAR------ 168 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~-l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~-----~~~------ 168 (233)
....+++++++++..+++ +.+.+.+ .++.+..++|+.+...+...+. ...+|+|+|.. +.+
T Consensus 80 ~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~ 155 (216)
T 3b6e_A 80 SEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGED 155 (216)
T ss_dssp TCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHHHHHHHHHC------
T ss_pred cCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHHHHHHHHhccCcccc
Confidence 346799999999988777 5554443 3678888888755433222222 14789999942 111
Q ss_pred -CcCCCCccEEE
Q psy14082 169 -GLDVEDVNTVN 179 (233)
Q Consensus 169 -Gldi~~v~~VI 179 (233)
++.+.++++||
T Consensus 156 ~~~~~~~~~~iI 167 (216)
T 3b6e_A 156 AGVQLSDFSLII 167 (216)
T ss_dssp -CCCGGGCSEEE
T ss_pred cccchhcccEEE
Confidence 25566777776
No 261
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=76.98 E-value=0.94 Score=35.45 Aligned_cols=17 Identities=0% Similarity=-0.533 Sum_probs=14.4
Q ss_pred CCceeEecCCCCCchHH
Q psy14082 8 GCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~ 24 (233)
.+.+++.+|+|+|||..
T Consensus 45 ~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 34589999999999965
No 262
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=76.98 E-value=1 Score=37.55 Aligned_cols=18 Identities=0% Similarity=-0.488 Sum_probs=15.8
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.|.-+.+.++||||||..
T Consensus 174 ~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTL 191 (361)
T ss_dssp TTCCEEEEESSSSCHHHH
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 578899999999999965
No 263
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=76.79 E-value=1.5 Score=36.30 Aligned_cols=25 Identities=4% Similarity=-0.351 Sum_probs=18.5
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.+.+++.+|+|+|||.. +-.+...+
T Consensus 84 ~~~iLL~GppGtGKT~l-a~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYL-AKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHH-HHHHHHHH
T ss_pred CceEEEECCCCCcHHHH-HHHHHHHh
Confidence 45699999999999976 44455444
No 264
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=76.51 E-value=1 Score=35.95 Aligned_cols=14 Identities=0% Similarity=-0.510 Sum_probs=12.9
Q ss_pred eeEecCCCCCchHH
Q psy14082 11 NFSKITNYLLSPPQ 24 (233)
Q Consensus 11 ~i~~a~tGsGKT~~ 24 (233)
+++.+|+|+|||..
T Consensus 47 vlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 47 VLLAGPPGCGKTLL 60 (274)
T ss_dssp EEEESSTTSCHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 89999999999965
No 265
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=76.23 E-value=8 Score=27.87 Aligned_cols=86 Identities=15% Similarity=0.142 Sum_probs=55.0
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSL 183 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~ 183 (233)
..+.+++|.|.+.+.++.+-+.|-...-...+=|+-..... .....|+++++... .-+..+++||.+.
T Consensus 37 ~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~---------~~~~PV~L~~~~~~---~~~~~~vLinL~~ 104 (150)
T 3sxu_A 37 RSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGP---------RGGAPVEIAWPQKR---SSSRRDILISLRT 104 (150)
T ss_dssp HTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSS---------TTCCSEEEECTTSC---CCSCCSEEEECCS
T ss_pred HcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCC---------CCCCCEEEeCCCCC---CCCcCCEEEECCC
Confidence 36789999999999999999999766433333343111000 13467999975421 1234679999874
Q ss_pred --CCCcccccceeeEEeecch
Q psy14082 184 --QLSANHNISQVIEVVQDYE 202 (233)
Q Consensus 184 --P~~~~~~i~~~~~~~~~~~ 202 (233)
|... ....|++.|+...+
T Consensus 105 ~~p~~~-~~f~Rvie~v~~d~ 124 (150)
T 3sxu_A 105 SFADFA-TAFTEVVDFVPYED 124 (150)
T ss_dssp SCCGGG-GGCSEEEEEECSSG
T ss_pred CCCccc-cCCCEEEEEeCCCH
Confidence 3333 34489999998655
No 266
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=76.22 E-value=2.5 Score=36.47 Aligned_cols=28 Identities=7% Similarity=-0.235 Sum_probs=20.9
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhc
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISH 35 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~ 35 (233)
...++++.+|+|+|||.. +-.+...+..
T Consensus 200 ~~~~~LL~G~pG~GKT~l-a~~la~~l~~ 227 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAI-AEGLAQQIIN 227 (468)
T ss_dssp SSCEEEEESCTTTTTHHH-HHHHHHHHHS
T ss_pred CCCCeEEECCCCCCHHHH-HHHHHHHHHh
Confidence 456899999999999976 4555555543
No 267
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=75.98 E-value=1.8 Score=36.06 Aligned_cols=25 Identities=12% Similarity=-0.227 Sum_probs=18.2
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVH 32 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~ 32 (233)
.+..+++.+|+|+|||.. +-.+...
T Consensus 71 ~~~~ill~Gp~GtGKT~l-a~~la~~ 95 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLM-AQTLAKH 95 (376)
T ss_dssp CCCCEEEECCTTSSHHHH-HHHHHHH
T ss_pred CCCCEEEECCCCCCHHHH-HHHHHHH
Confidence 356799999999999966 3334433
No 268
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=75.88 E-value=1 Score=32.46 Aligned_cols=15 Identities=0% Similarity=-0.161 Sum_probs=12.7
Q ss_pred ceeEecCCCCCchHH
Q psy14082 10 QNFSKITNYLLSPPQ 24 (233)
Q Consensus 10 d~i~~a~tGsGKT~~ 24 (233)
-+++.+++|||||..
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999965
No 269
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=75.87 E-value=1.1 Score=32.41 Aligned_cols=17 Identities=6% Similarity=-0.382 Sum_probs=14.4
Q ss_pred CCceeEecCCCCCchHH
Q psy14082 8 GCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~ 24 (233)
+.-+++.+++|||||..
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45688999999999965
No 270
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=75.78 E-value=5 Score=28.84 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=31.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCC
Q psy14082 44 GPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPK 82 (233)
Q Consensus 44 ~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~ 82 (233)
+.++||.|++++-+..+.+.+... ++.+..++|+.+.
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~ 71 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL--GYPCDKIHGGMIQ 71 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCH
Confidence 457999999999999999999887 7789999998654
No 271
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=75.74 E-value=1.2 Score=34.07 Aligned_cols=19 Identities=0% Similarity=-0.417 Sum_probs=15.5
Q ss_pred CCCCceeEecCCCCCchHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~ 24 (233)
..|.-+.+.+|+|+|||..
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4577788999999999955
No 272
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=75.71 E-value=1.2 Score=34.45 Aligned_cols=20 Identities=5% Similarity=-0.132 Sum_probs=16.0
Q ss_pred CCCCCceeEecCCCCCchHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~ 24 (233)
...|.=+.+.+|+|+|||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 35688889999999999965
No 273
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=75.70 E-value=1.2 Score=36.41 Aligned_cols=23 Identities=4% Similarity=-0.324 Sum_probs=17.2
Q ss_pred CceeEecCCCCCchHHhHHHHHHh
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVH 32 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~ 32 (233)
..+++.+|+|+|||.. +-.+...
T Consensus 56 ~~vll~G~~GtGKT~l-a~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL-ANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHH-HHHHHHH
T ss_pred CeEEEECcCCCCHHHH-HHHHHHH
Confidence 5799999999999976 4434433
No 274
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=75.63 E-value=0.81 Score=36.00 Aligned_cols=25 Identities=4% Similarity=-0.420 Sum_probs=17.7
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.+.+++.+|+|+|||.. +-.+...+
T Consensus 44 ~~~vll~G~~GtGKT~l-a~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLL-AKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHH-HHHHHHHH
T ss_pred CceEEEECCCCCcHHHH-HHHHHHHh
Confidence 34589999999999966 44444433
No 275
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=75.59 E-value=4.4 Score=25.57 Aligned_cols=37 Identities=11% Similarity=0.086 Sum_probs=29.9
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCe-eEEEeCCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHS-AICIHGDKT 141 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 141 (233)
.+..+++++|.+-..+...+..|++.|+. +..+ |++.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 45678999999999999999999999985 4445 7643
No 276
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=75.52 E-value=1.6 Score=32.80 Aligned_cols=20 Identities=10% Similarity=-0.168 Sum_probs=16.7
Q ss_pred CCCCCceeEecCCCCCchHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~ 24 (233)
...|.-+++.++.|||||..
T Consensus 7 ~~~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHH
Confidence 34577899999999999965
No 277
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=75.51 E-value=1.1 Score=33.63 Aligned_cols=16 Identities=0% Similarity=-0.433 Sum_probs=13.6
Q ss_pred CceeEecCCCCCchHH
Q psy14082 9 CQNFSKITNYLLSPPQ 24 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~ 24 (233)
|-+++.+|+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4588999999999965
No 278
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=75.48 E-value=1.6 Score=37.15 Aligned_cols=22 Identities=9% Similarity=-0.176 Sum_probs=16.6
Q ss_pred eeEecCCCCCchHHhHHHHHHhh
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
+++.+|||||||.. +.-+..++
T Consensus 5 i~i~GptgsGKttl-a~~La~~~ 26 (409)
T 3eph_A 5 IVIAGTTGVGKSQL-SIQLAQKF 26 (409)
T ss_dssp EEEEECSSSSHHHH-HHHHHHHH
T ss_pred EEEECcchhhHHHH-HHHHHHHC
Confidence 67899999999965 55565554
No 279
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=75.47 E-value=3 Score=33.71 Aligned_cols=19 Identities=0% Similarity=-0.421 Sum_probs=15.4
Q ss_pred CCCceeEecCCCCCchHHh
Q psy14082 7 SGCQNFSKITNYLLSPPQY 25 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~ 25 (233)
.|.-+.+.+++|+|||...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp CSSEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667888999999999763
No 280
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=75.46 E-value=3.3 Score=29.41 Aligned_cols=38 Identities=5% Similarity=-0.003 Sum_probs=32.4
Q ss_pred CCCCeEEEEecch--hHHHHHHHHHhhCCCeeEEEeCCCC
Q psy14082 104 NPAFKVIVFVETK--KKVEDITRALRRERHSAICIHGDKT 141 (233)
Q Consensus 104 ~~~~k~iIf~~~~--~~~~~l~~~L~~~~~~~~~~~~~~~ 141 (233)
.+..+++++|.+- ..+...+..|+..|+++..+.||+.
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 3567899999987 5888899999999999999999854
No 281
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=75.41 E-value=8.1 Score=36.24 Aligned_cols=56 Identities=14% Similarity=0.029 Sum_probs=44.8
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhh----CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRR----ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD 164 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~ 164 (233)
...+.+++|.++|+.-+...++.+.. .|+++.++.|+++.+.|.... ..+|+++|+
T Consensus 149 aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 149 ALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp HTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 34567899999999998877777654 589999999999987776554 268999995
No 282
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=75.25 E-value=0.94 Score=37.02 Aligned_cols=24 Identities=4% Similarity=-0.363 Sum_probs=17.4
Q ss_pred CCceeEecCCCCCchHHhHHHHHHh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVH 32 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~ 32 (233)
+..+++.+++|+|||.. +-.+...
T Consensus 45 ~~~vLl~G~~GtGKT~l-a~~la~~ 68 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTA-VRALAAL 68 (350)
T ss_dssp GCCEEEECCGGGCTTHH-HHHHHHH
T ss_pred CceEEEECCCCccHHHH-HHHHHHh
Confidence 45699999999999966 3334433
No 283
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.24 E-value=1.9 Score=37.03 Aligned_cols=25 Identities=8% Similarity=-0.326 Sum_probs=19.3
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.+-++..+|+|||||+. +-++...+
T Consensus 215 prGvLL~GPPGtGKTll-AkAiA~e~ 239 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLL-AKAVAATI 239 (437)
T ss_dssp CCEEEEESCTTSSHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCcHHHH-HHHHHHHh
Confidence 46799999999999976 55555544
No 284
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=75.14 E-value=5.1 Score=34.43 Aligned_cols=36 Identities=8% Similarity=-0.197 Sum_probs=23.3
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEc
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLA 51 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~ 51 (233)
+.-+++.+++|+|||.+ +.-+...+.. .+.+++++.
T Consensus 100 p~vIlivG~~G~GKTTt-~~kLA~~l~~-------~G~kVllv~ 135 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTT-VAKLARYFQK-------RGYKVGVVC 135 (443)
T ss_dssp SEEEEEECCTTSSHHHH-HHHHHHHHHT-------TTCCEEEEE
T ss_pred CeEEEEECcCCCCHHHH-HHHHHHHHHH-------CCCeEEEEe
Confidence 44577889999999977 4444444432 255566655
No 285
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=75.10 E-value=4.4 Score=27.16 Aligned_cols=38 Identities=11% Similarity=0.228 Sum_probs=32.8
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKT 141 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 141 (233)
.+..+++++|.+-..+...+..|+..|+....+.|++.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 56788999999999999999999999986677889864
No 286
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=75.05 E-value=1.3 Score=33.57 Aligned_cols=20 Identities=5% Similarity=-0.169 Sum_probs=15.3
Q ss_pred CCCCCceeEecCCCCCchHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~ 24 (233)
+..|.=+.+.+|+|||||..
T Consensus 17 i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp --CCCEEEEECSTTSSHHHH
T ss_pred CCCCCEEEEECCCCCCHHHH
Confidence 45577788899999999965
No 287
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=75.01 E-value=1.2 Score=40.38 Aligned_cols=110 Identities=17% Similarity=0.151 Sum_probs=77.4
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCC
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTP 81 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~ 81 (233)
++.++.|+|+++.+|||+|||++|++|+++.+... ..
T Consensus 16 i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~----------------------------~~--------------- 52 (699)
T 4gl2_A 16 AQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKK----------------------------KK--------------- 52 (699)
T ss_dssp HHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHH----------------------------HH---------------
T ss_pred HHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhc----------------------------cc---------------
Confidence 45567899999999999999999999999877532 00
Q ss_pred CCCeeEEeccchhhhchHHHhcCCCCeEEEEecchhHHHHH-HHHHhhCC---CeeEEEeCCCCHHHHHHHHHHhhCCCC
Q psy14082 82 KGPQDCLPLHRFVFNCQYEMAKNPAFKVIVFVETKKKVEDI-TRALRRER---HSAICIHGDKTQQDRDYVLNDFRQGKA 157 (233)
Q Consensus 82 ~~~~~lv~l~r~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l-~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~ 157 (233)
.....++||.++++.-+... .+.+++.. +.+..++|+.+..++...+. +..
T Consensus 53 ---------------------~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~ 107 (699)
T 4gl2_A 53 ---------------------ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSC 107 (699)
T ss_dssp ---------------------HTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSC
T ss_pred ---------------------cCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCC
Confidence 02346889999999988888 88777653 79999999977655443333 468
Q ss_pred CEEEeccc-----C-------cCCcCCCCccEEE
Q psy14082 158 PILVATDV-----A-------ARGLDVEDVNTVN 179 (233)
Q Consensus 158 ~iLv~T~~-----~-------~~Gldi~~v~~VI 179 (233)
+|+|+|.- + ...+...++++||
T Consensus 108 ~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvV 141 (699)
T 4gl2_A 108 DIIISTAQILENSLLNLENGEDAGVQLSDFSLII 141 (699)
T ss_dssp SEEEEEHHHHHHHTC--------CCCGGGCSEEE
T ss_pred CEEEECHHHHHHHHhccccccccceecccCcEEE
Confidence 99999942 2 2235677788776
No 288
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=74.96 E-value=0.93 Score=33.27 Aligned_cols=20 Identities=0% Similarity=-0.499 Sum_probs=15.8
Q ss_pred CCCceeEecCCCCCchHHhH
Q psy14082 7 SGCQNFSKITNYLLSPPQYM 26 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~ 26 (233)
.|.=+.+.+++|||||...-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 46667889999999996643
No 289
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=74.87 E-value=1.8 Score=35.84 Aligned_cols=23 Identities=4% Similarity=-0.557 Sum_probs=17.5
Q ss_pred CCceeEecCCCCCchHHhHHHHHH
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAV 31 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~ 31 (233)
.+.+++.+|+|+|||.. +-.+..
T Consensus 117 ~~~vLl~GppGtGKT~l-a~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLI-GKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHH-HHHHHH
T ss_pred CceEEEECCCCCCHHHH-HHHHHH
Confidence 56799999999999976 333443
No 290
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=74.79 E-value=0.82 Score=38.06 Aligned_cols=21 Identities=14% Similarity=-0.121 Sum_probs=16.9
Q ss_pred CCCCCCc--eeEecCCCCCchHH
Q psy14082 4 PSESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 4 ~~~~g~d--~i~~a~tGsGKT~~ 24 (233)
.++.|.+ +++-++||||||.+
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyT 101 (347)
T 1f9v_A 79 SSLDGYNVCIFAYGQTGSGKTFT 101 (347)
T ss_dssp GGGGTCCEEEEEECCTTSSHHHH
T ss_pred HhcCCceeEEEEECCCCCCCcEe
Confidence 3466777 67788999999988
No 291
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=74.62 E-value=1.3 Score=33.16 Aligned_cols=18 Identities=0% Similarity=-0.311 Sum_probs=15.1
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.|.=+.+.+|+|||||..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 466778899999999965
No 292
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=74.53 E-value=3.2 Score=36.89 Aligned_cols=27 Identities=7% Similarity=-0.265 Sum_probs=20.3
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhc
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISH 35 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~ 35 (233)
.-++++.+.||||||.+ +-.++..++.
T Consensus 214 ~pHlLIaG~TGSGKS~~-L~tlI~sLl~ 240 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVG-VNAMLLSILF 240 (574)
T ss_dssp SCCEEEECCTTSSHHHH-HHHHHHHHHT
T ss_pred CCeeEEECCCCCCHHHH-HHHHHHHHHH
Confidence 46899999999999976 5555555543
No 293
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=74.45 E-value=1.2 Score=32.48 Aligned_cols=15 Identities=0% Similarity=-0.480 Sum_probs=12.7
Q ss_pred ceeEecCCCCCchHH
Q psy14082 10 QNFSKITNYLLSPPQ 24 (233)
Q Consensus 10 d~i~~a~tGsGKT~~ 24 (233)
-+++.+++|||||..
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 368899999999965
No 294
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=74.44 E-value=1.5 Score=35.19 Aligned_cols=18 Identities=6% Similarity=-0.391 Sum_probs=15.0
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.+.-+++.+++|||||..
T Consensus 32 ~~~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSL 49 (287)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456689999999999965
No 295
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=74.35 E-value=2.7 Score=28.02 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=32.0
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCe-eEEEeCCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHS-AICIHGDKT 141 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 141 (233)
....+++++|.+-..+...+..|+..|+. +..+.||+.
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 45678999999999999999999999985 777888754
No 296
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=74.27 E-value=1.7 Score=35.83 Aligned_cols=24 Identities=8% Similarity=-0.187 Sum_probs=17.5
Q ss_pred CceeEecCCCCCchHHhHHHHHHhh
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.-+++.+|||||||.. ..-+..++
T Consensus 6 ~~i~i~GptGsGKTtl-a~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDL-AMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHH-HHHHHHHS
T ss_pred cEEEEECCCCCCHHHH-HHHHHHHc
Confidence 3578999999999965 45455544
No 297
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=74.16 E-value=11 Score=32.70 Aligned_cols=22 Identities=9% Similarity=-0.259 Sum_probs=17.9
Q ss_pred CCCCCCCceeEecCCCCCchHH
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~ 24 (233)
-++-+|.-..+.++.|+|||..
T Consensus 147 ~pigrGQr~~Ifgg~G~GKt~L 168 (469)
T 2c61_A 147 NTLVRGQKLPIFSASGLPHNEI 168 (469)
T ss_dssp SCCBTTCBCCEEECTTSCHHHH
T ss_pred eccccCCEEEEECCCCCCHHHH
Confidence 3566788888899999999953
No 298
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=74.06 E-value=0.8 Score=40.12 Aligned_cols=19 Identities=16% Similarity=-0.130 Sum_probs=16.7
Q ss_pred CCCCceeEecCCCCCchHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~ 24 (233)
..|.++++.+|+|+|||..
T Consensus 39 ~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 39 LSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHTCEEEEECCSSSSHHHH
T ss_pred hcCCeeEeecCchHHHHHH
Confidence 4578999999999999965
No 299
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=74.04 E-value=1.3 Score=35.17 Aligned_cols=14 Identities=0% Similarity=-0.434 Sum_probs=12.9
Q ss_pred eeEecCCCCCchHH
Q psy14082 11 NFSKITNYLLSPPQ 24 (233)
Q Consensus 11 ~i~~a~tGsGKT~~ 24 (233)
+++.+|+|+|||..
T Consensus 76 vll~Gp~GtGKTtl 89 (278)
T 1iy2_A 76 VLLVGPPGVGKTHL 89 (278)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCcChHHHH
Confidence 89999999999965
No 300
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=73.99 E-value=1.4 Score=33.13 Aligned_cols=18 Identities=0% Similarity=-0.402 Sum_probs=15.2
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.|.-+++.+++|||||..
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 466788999999999965
No 301
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=73.99 E-value=2.9 Score=39.49 Aligned_cols=109 Identities=15% Similarity=0.107 Sum_probs=75.6
Q ss_pred CCCCCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCC
Q psy14082 2 LPPSESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTP 81 (233)
Q Consensus 2 ip~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~ 81 (233)
||.++.|+|+++.++||||||++|++|+++.+... +
T Consensus 257 i~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~--------~------------------------------------ 292 (936)
T 4a2w_A 257 AQPAINGKNALICAPTGSGKTFVSILICEHHFQNM--------P------------------------------------ 292 (936)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTC--------C------------------------------------
T ss_pred HHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhc--------c------------------------------------
Confidence 45667899999999999999999999998765311 0
Q ss_pred CCCeeEEeccchhhhchHHHhcCCCCeEEEEecchhHHHHHHHHHhhC----CCeeEEEeCCCCHHHHHHHHHHhhCCCC
Q psy14082 82 KGPQDCLPLHRFVFNCQYEMAKNPAFKVIVFVETKKKVEDITRALRRE----RHSAICIHGDKTQQDRDYVLNDFRQGKA 157 (233)
Q Consensus 82 ~~~~~lv~l~r~~~~~~~~~~~~~~~k~iIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 157 (233)
...+.+++|.++++..+......+++. ++++..+||+.+...+...+.. ..
T Consensus 293 ---------------------~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~----~~ 347 (936)
T 4a2w_A 293 ---------------------AGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DS 347 (936)
T ss_dssp ---------------------SSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHH----HC
T ss_pred ---------------------ccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhcc----CC
Confidence 013468999999999888887777654 8999999999876654333322 47
Q ss_pred CEEEeccc-----CcCC-c-CCCCccEEE
Q psy14082 158 PILVATDV-----AARG-L-DVEDVNTVN 179 (233)
Q Consensus 158 ~iLv~T~~-----~~~G-l-di~~v~~VI 179 (233)
+|+|+|.- +.++ + .+.++++||
T Consensus 348 ~IvI~Tp~~L~~~l~~~~~~~l~~~~liV 376 (936)
T 4a2w_A 348 DIIVVTPQILVNSFEDGTLTSLSIFTLMI 376 (936)
T ss_dssp SEEEECHHHHHHHHHSSSCCCGGGCSEEE
T ss_pred CEEEecHHHHHHHHHcCccccccCCCEEE
Confidence 89999932 2222 2 455677666
No 302
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=73.85 E-value=1.5 Score=32.58 Aligned_cols=15 Identities=0% Similarity=-0.414 Sum_probs=12.5
Q ss_pred ceeEecCCCCCchHH
Q psy14082 10 QNFSKITNYLLSPPQ 24 (233)
Q Consensus 10 d~i~~a~tGsGKT~~ 24 (233)
=+.+.+|+|+|||..
T Consensus 3 ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 3 PIVISGPSGTGKSTL 17 (186)
T ss_dssp CEEEESSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 366789999999965
No 303
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=73.54 E-value=3 Score=28.72 Aligned_cols=37 Identities=8% Similarity=0.119 Sum_probs=31.7
Q ss_pred CC-CeEEEEe-cchhHHHHHHHHHhhCCCeeEEEeCCCC
Q psy14082 105 PA-FKVIVFV-ETKKKVEDITRALRRERHSAICIHGDKT 141 (233)
Q Consensus 105 ~~-~k~iIf~-~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 141 (233)
+. .+++++| .+-..+...+..|+..|+++..+.||+.
T Consensus 87 ~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 87 LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 44 7899999 5778888999999999999999999865
No 304
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=73.53 E-value=1.3 Score=32.25 Aligned_cols=18 Identities=0% Similarity=-0.435 Sum_probs=15.2
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.|.-+++.+++|||||..
T Consensus 7 ~g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp TSEEEEEECSTTSCHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 466788999999999965
No 305
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=73.52 E-value=7.8 Score=27.80 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=31.6
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCC
Q psy14082 44 GPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPK 82 (233)
Q Consensus 44 ~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~ 82 (233)
+.++||.|++++-+..+.+.+... ++.+..++|+.+.
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~ 66 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQ 66 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT--TCCEEEECTTSCH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEECCCCH
Confidence 457999999999999999998876 6788889988654
No 306
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=73.46 E-value=1.6 Score=35.98 Aligned_cols=18 Identities=6% Similarity=-0.354 Sum_probs=15.5
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.|..+.+.++||||||..
T Consensus 170 ~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HTCCEEEEESTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477889999999999964
No 307
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=73.44 E-value=6.7 Score=33.59 Aligned_cols=36 Identities=8% Similarity=-0.253 Sum_probs=22.5
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEc
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLA 51 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~ 51 (233)
+.-+++.+++|+|||.+. .-+...+.. .+.+++++.
T Consensus 97 ~~vI~lvG~~GsGKTTt~-~kLA~~l~~-------~G~kVllv~ 132 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTA-GKLAYFYKK-------RGYKVGLVA 132 (433)
T ss_dssp SEEEEECCCTTSCHHHHH-HHHHHHHHH-------TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHHHHH-------cCCeEEEEe
Confidence 455778899999999763 334433432 245566655
No 308
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=73.36 E-value=5.9 Score=37.32 Aligned_cols=56 Identities=14% Similarity=-0.027 Sum_probs=45.1
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHh----hCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALR----RERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD 164 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~ 164 (233)
...+.+++|.++|+.-+...++.+. ..|+++.++.|+++.+.|.... ..+|+++|+
T Consensus 117 aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 117 ALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp HTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred HHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 3456789999999998887777665 4589999999999987776654 379999995
No 309
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=73.33 E-value=2.2 Score=32.18 Aligned_cols=24 Identities=8% Similarity=-0.209 Sum_probs=17.4
Q ss_pred ceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
-+++.+++|+|||.. +-.+...+.
T Consensus 47 ~~ll~G~~G~GKT~l-~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI-ARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHHhc
Confidence 578999999999965 444555443
No 310
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=73.33 E-value=1.8 Score=32.62 Aligned_cols=20 Identities=5% Similarity=-0.303 Sum_probs=17.0
Q ss_pred CCCCCceeEecCCCCCchHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~ 24 (233)
+..|.=+.+.+++|+|||..
T Consensus 17 i~~G~~~~i~G~~GsGKTtl 36 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTL 36 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHH
T ss_pred CcCCEEEEEECCCCCCHHHH
Confidence 45678889999999999955
No 311
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=72.96 E-value=1.4 Score=36.70 Aligned_cols=20 Identities=15% Similarity=-0.122 Sum_probs=16.5
Q ss_pred CCCCCc--eeEecCCCCCchHH
Q psy14082 5 SESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 5 ~~~g~d--~i~~a~tGsGKT~~ 24 (233)
++.|.+ +++-++||||||.+
T Consensus 81 ~l~G~n~tifAYGqTGSGKTyT 102 (349)
T 3t0q_A 81 SLDGYNVCIFAYGQTGSGKTYT 102 (349)
T ss_dssp GGTTCEEEEEEECSTTSSHHHH
T ss_pred HHCCcceeEEEeCCCCCCCceE
Confidence 466777 57788999999988
No 312
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=72.91 E-value=0.88 Score=37.10 Aligned_cols=18 Identities=11% Similarity=-0.051 Sum_probs=15.9
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.|..++..+|+|+|||..
T Consensus 45 ~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HTCCEEEESCCCHHHHHH
T ss_pred cCCeEEEECCCCCcHHHH
Confidence 477899999999999965
No 313
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=72.91 E-value=4.9 Score=32.59 Aligned_cols=27 Identities=7% Similarity=-0.114 Sum_probs=18.6
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhc
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISH 35 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~ 35 (233)
.|.-+.+.+++|+|||.. +..+..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTl--l~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTT--IAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHH--HHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHH--HHHHHHHHH
Confidence 466677899999999965 334444443
No 314
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=72.89 E-value=2.2 Score=29.42 Aligned_cols=38 Identities=18% Similarity=0.107 Sum_probs=32.0
Q ss_pred CCCCeEEEEecchhH--HHHHHHHHhhCCCeeEEEeCCCC
Q psy14082 104 NPAFKVIVFVETKKK--VEDITRALRRERHSAICIHGDKT 141 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~--~~~l~~~L~~~~~~~~~~~~~~~ 141 (233)
.+..+++++|.+-.. +...+..|++.|+++..+.||+.
T Consensus 69 ~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 69 DPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp CTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 356789999999877 78899999999999888888754
No 315
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=72.66 E-value=3.3 Score=39.88 Aligned_cols=65 Identities=26% Similarity=0.177 Sum_probs=49.4
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEec-----ccCcCCcC-CCCccE
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVAT-----DVAARGLD-VEDVNT 177 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T-----~~~~~Gld-i~~v~~ 177 (233)
..+.++++.++++.-+.+.+..+.+..-.+..++|+++ .+++.+|+|+| +.+.++-. +.++++
T Consensus 225 ~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~l 293 (1108)
T 3l9o_A 225 KNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAW 293 (1108)
T ss_dssp HTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEE
T ss_pred hcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCE
Confidence 35679999999999999999999886668888999876 34568999999 34444422 556666
Q ss_pred EE
Q psy14082 178 VN 179 (233)
Q Consensus 178 VI 179 (233)
||
T Consensus 294 VV 295 (1108)
T 3l9o_A 294 VI 295 (1108)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 316
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=72.59 E-value=10 Score=30.11 Aligned_cols=51 Identities=14% Similarity=0.131 Sum_probs=42.3
Q ss_pred cCCCCeEEEEec---------------------chhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhC
Q psy14082 103 KNPAFKVIVFVE---------------------TKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQ 154 (233)
Q Consensus 103 ~~~~~k~iIf~~---------------------~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 154 (233)
..+.+.+|||.| +...++.+.+.|+.+|+.+ .++.+++.++-.+.+++|..
T Consensus 14 ~~~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 14 SKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEI-KPHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp SSSCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHHHHH
Confidence 345677888887 4467899999999999996 56678999999999999975
No 317
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=72.33 E-value=1.2 Score=32.85 Aligned_cols=18 Identities=11% Similarity=-0.306 Sum_probs=15.1
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.|.-+++.+++|||||..
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456788999999999965
No 318
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=72.29 E-value=1.4 Score=36.83 Aligned_cols=20 Identities=5% Similarity=-0.213 Sum_probs=16.2
Q ss_pred CCCCCc--eeEecCCCCCchHH
Q psy14082 5 SESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 5 ~~~g~d--~i~~a~tGsGKT~~ 24 (233)
++.|.+ +++-++||||||.+
T Consensus 101 ~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 101 FLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HTTTCCEEEEEECCTTSSHHHH
T ss_pred HhCCCceEEEEeCCCCCCceee
Confidence 356777 67888999999988
No 319
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.25 E-value=2.6 Score=36.15 Aligned_cols=25 Identities=4% Similarity=-0.404 Sum_probs=19.2
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.+-++..+|+|||||+. +-++...+
T Consensus 216 prGvLLyGPPGTGKTlL-AkAiA~e~ 240 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLL-AKAVANQT 240 (437)
T ss_dssp CSEEEEESSTTTTHHHH-HHHHHHHH
T ss_pred CCCCceECCCCchHHHH-HHHHHHHh
Confidence 46799999999999976 55555544
No 320
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=72.04 E-value=1.7 Score=36.29 Aligned_cols=20 Identities=10% Similarity=-0.152 Sum_probs=16.1
Q ss_pred CCCCCc--eeEecCCCCCchHH
Q psy14082 5 SESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 5 ~~~g~d--~i~~a~tGsGKT~~ 24 (233)
++.|.+ +++-++||||||.+
T Consensus 76 ~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 76 ILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HTTTCCEEEEEECSTTSSHHHH
T ss_pred HhCCCcceEEEECCCCCCcceE
Confidence 356776 67788999999987
No 321
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=71.87 E-value=1.4 Score=35.25 Aligned_cols=23 Identities=4% Similarity=-0.245 Sum_probs=16.9
Q ss_pred ceeEecCCCCCchHHhHHHHHHhh
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.+++.+|+|+|||.. +-.+...+
T Consensus 49 ~~ll~G~~GtGKt~l-a~~la~~~ 71 (311)
T 4fcw_A 49 SFLFLGPTGVGKTEL-AKTLAATL 71 (311)
T ss_dssp EEEEESCSSSSHHHH-HHHHHHHH
T ss_pred EEEEECCCCcCHHHH-HHHHHHHH
Confidence 589999999999966 33344444
No 322
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=71.87 E-value=4.1 Score=28.96 Aligned_cols=38 Identities=8% Similarity=0.006 Sum_probs=31.1
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCC-eeEEEeCCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERH-SAICIHGDKT 141 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 141 (233)
.+..+++++|.+-..+...+..|+..|+ ++..+.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 4567899999998888999999999998 5888889874
No 323
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=71.81 E-value=1.5 Score=36.79 Aligned_cols=23 Identities=4% Similarity=-0.424 Sum_probs=17.8
Q ss_pred CCceeEecCCCCCchHHhHHHHHH
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAV 31 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~ 31 (233)
++.+++.+|+|+|||.. +-.+..
T Consensus 148 ~~~vLL~GppGtGKT~l-a~aia~ 170 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTML-AKAVAA 170 (389)
T ss_dssp CSEEEEESSTTSCHHHH-HHHHHH
T ss_pred CceEEEECCCCCCHHHH-HHHHHH
Confidence 57899999999999966 443443
No 324
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.79 E-value=2.8 Score=34.11 Aligned_cols=24 Identities=4% Similarity=-0.187 Sum_probs=17.6
Q ss_pred CceeEecCCCCCchHHhHHHHHHhh
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.++++.+|+|+|||.. +-.+...+
T Consensus 59 ~~~ll~G~~G~GKT~l-a~~la~~l 82 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTST-ILALTKEL 82 (353)
T ss_dssp CCEEEECSTTSSHHHH-HHHHHHHH
T ss_pred CEEEEECCCCCCHHHH-HHHHHHHh
Confidence 4599999999999965 44454444
No 325
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.57 E-value=2.4 Score=36.68 Aligned_cols=25 Identities=4% Similarity=-0.425 Sum_probs=19.2
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.+-++..+|+|||||+. +-++...+
T Consensus 243 prGILLyGPPGTGKTlL-AkAiA~e~ 267 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLC-ARAVANRT 267 (467)
T ss_dssp CSEEEECSCTTSSHHHH-HHHHHHHH
T ss_pred CCceEeeCCCCCcHHHH-HHHHHhcc
Confidence 56799999999999976 55555544
No 326
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=71.57 E-value=2.6 Score=34.62 Aligned_cols=26 Identities=4% Similarity=-0.273 Sum_probs=19.2
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
+..+++.+++|+|||.. +-.+...+.
T Consensus 45 ~~~vli~G~~G~GKTtl-~~~l~~~~~ 70 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV-VKFVLSKLH 70 (386)
T ss_dssp CCCEEEEECTTSSHHHH-HHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 56799999999999966 444555443
No 327
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=71.31 E-value=2.5 Score=34.81 Aligned_cols=23 Identities=0% Similarity=-0.451 Sum_probs=17.4
Q ss_pred ceeEecCCCCCchHHhHHHHHHhh
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.+++.+|+|+|||.. +-.+...+
T Consensus 46 ~~li~G~~G~GKTtl-~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT-LRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHH
T ss_pred eEEEECCCCCCHHHH-HHHHHHHH
Confidence 799999999999966 44444444
No 328
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=71.04 E-value=21 Score=27.98 Aligned_cols=58 Identities=10% Similarity=0.222 Sum_probs=45.4
Q ss_pred CCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHH-----HHHHHhhCCCCCEEEecc
Q psy14082 105 PAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRD-----YVLNDFRQGKAPILVATD 164 (233)
Q Consensus 105 ~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~-----~~~~~f~~g~~~iLv~T~ 164 (233)
.+.++++...+.+.++.+.+.+++.|.++..+..+.+..+.. ++.++| |.+++||..-
T Consensus 30 ~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~--G~iDiLVNNA 92 (254)
T 4fn4_A 30 NDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY--SRIDVLCNNA 92 (254)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH--SCCCEEEECC
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc--CCCCEEEECC
Confidence 566788888888899999999999999999999998766553 233444 7899999753
No 329
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=70.90 E-value=4.5 Score=33.31 Aligned_cols=61 Identities=10% Similarity=-0.025 Sum_probs=34.2
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHH-HHHHHHHHHHh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTREL-AQQIQTVAKEF 67 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL-~~Q~~~~~~~~ 67 (233)
+..|.-+.+.+++|+|||.. ++-++...... ......+..++++.....+ ..++.+.+..+
T Consensus 119 l~~G~i~~I~G~~GsGKTtl-a~~la~~~~~~-~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQL-SHTLCVTAQLP-GAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHH-HHHHHHHTTSC-BTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHH-HHHHHHHHhcc-cccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 45677889999999999955 44444432211 0000135578888754321 34555555544
No 330
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=70.90 E-value=1.5 Score=37.00 Aligned_cols=20 Identities=5% Similarity=-0.253 Sum_probs=16.2
Q ss_pred CCCCCc--eeEecCCCCCchHH
Q psy14082 5 SESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 5 ~~~g~d--~i~~a~tGsGKT~~ 24 (233)
++.|.+ +++-++||||||.+
T Consensus 94 ~l~G~N~tifAYGqTGSGKTyT 115 (388)
T 3bfn_A 94 LLEGQNASVLAYGPTGAGKTHT 115 (388)
T ss_dssp HTTTCCEEEEEESCTTSSHHHH
T ss_pred hhcCceeeEeeecCCCCCCCeE
Confidence 356777 67788999999987
No 331
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=70.62 E-value=1.7 Score=36.56 Aligned_cols=20 Identities=10% Similarity=-0.167 Sum_probs=16.2
Q ss_pred CCCCCc--eeEecCCCCCchHH
Q psy14082 5 SESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 5 ~~~g~d--~i~~a~tGsGKT~~ 24 (233)
++.|.+ +++-++||||||.+
T Consensus 111 ~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 111 ALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp GGGTCCEEEEEECSTTSSHHHH
T ss_pred hcCCCceEEEEeCCCCCCCceE
Confidence 456777 67788999999987
No 332
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=70.57 E-value=1.6 Score=32.23 Aligned_cols=18 Identities=0% Similarity=-0.344 Sum_probs=14.9
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.+.-+++.+++|||||..
T Consensus 4 ~~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTL 21 (193)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 355688999999999965
No 333
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=70.55 E-value=6.4 Score=31.82 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=34.2
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhh-hcc----CCCCCCCC----ceEEEEcCcHHH-HHHHHHHHHHh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHI-SHQ----EPVKQGDG----PIALVLAPTREL-AQQIQTVAKEF 67 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l-~~~----~~~~~~~~----~~~lil~PtreL-~~Q~~~~~~~~ 67 (233)
++.|.-+++.+++|+|||.. ++-+.... +.. .......+ ..++++.-...+ ..++.+.++.+
T Consensus 95 l~~g~i~~i~G~~gsGKT~l-a~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQI-MHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp EETTEEEEEEESTTSSHHHH-HHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHH-HHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 34677789999999999955 44343322 110 00000112 578887754322 45666666555
No 334
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=70.41 E-value=1.8 Score=33.38 Aligned_cols=21 Identities=5% Similarity=-0.290 Sum_probs=16.9
Q ss_pred CCCCCceeEecCCCCCchHHh
Q psy14082 5 SESGCQNFSKITNYLLSPPQY 25 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~ 25 (233)
+..|.-+.+.+|+|||||...
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHH
Confidence 346777889999999999653
No 335
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=70.40 E-value=19 Score=31.24 Aligned_cols=29 Identities=7% Similarity=-0.138 Sum_probs=21.4
Q ss_pred CCCCCCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 4 PSESGCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 4 ~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
++-.|.-..+.++.|+|||.. +.-++..+
T Consensus 149 pigkGQr~~Ifgg~G~GKT~L-~~~i~~~~ 177 (482)
T 2ck3_D 149 PYAKGGKIGLFGGAGVGKTVL-IMELINNV 177 (482)
T ss_dssp CEETTCEEEEEECTTSSHHHH-HHHHHHHT
T ss_pred ccccCCeeeeecCCCCChHHH-HHHHHHhh
Confidence 456788899999999999976 44444433
No 336
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=70.36 E-value=5.3 Score=29.47 Aligned_cols=22 Identities=0% Similarity=-0.369 Sum_probs=15.3
Q ss_pred eeEecCCCCCchHHhHHHHHHhh
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
+.+.+++|||||.. +-.++..+
T Consensus 9 i~i~G~sGsGKTTl-~~~l~~~l 30 (174)
T 1np6_A 9 LAFAAWSGTGKTTL-LKKLIPAL 30 (174)
T ss_dssp EEEECCTTSCHHHH-HHHHHHHH
T ss_pred EEEEeCCCCCHHHH-HHHHHHhc
Confidence 56788999999954 44455444
No 337
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=70.34 E-value=3.5 Score=28.58 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=32.6
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCe-eEEEeCCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHS-AICIHGDKT 141 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 141 (233)
.+..+++++|.+-..+...+..|++.|+. +..+.|++.
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 35678999999999999999999999985 888999864
No 338
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=70.28 E-value=1.9 Score=37.61 Aligned_cols=18 Identities=0% Similarity=-0.522 Sum_probs=15.6
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
..+.+++.+|+|+|||+.
T Consensus 237 ~~~~vLL~GppGtGKT~l 254 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLI 254 (489)
T ss_dssp CCCEEEEECSTTSSHHHH
T ss_pred CCCcEEEECcCCCCHHHH
Confidence 456799999999999976
No 339
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=70.07 E-value=1.7 Score=34.02 Aligned_cols=20 Identities=5% Similarity=-0.298 Sum_probs=16.0
Q ss_pred CCCCCceeEecCCCCCchHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~ 24 (233)
...+.-+++.+++|||||..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTI 48 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHH
T ss_pred ccCCeEEEEECCCCCCHHHH
Confidence 34566789999999999965
No 340
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=70.00 E-value=5.1 Score=36.75 Aligned_cols=27 Identities=7% Similarity=-0.258 Sum_probs=20.5
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
..++++..+|+|+|||.. +-.+...+.
T Consensus 200 ~~~~vLL~G~pGtGKT~l-a~~la~~l~ 226 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAI-AEGLAQQII 226 (758)
T ss_dssp SSCEEEEESCTTTTTHHH-HHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHH-HHHHHHHHh
Confidence 466899999999999976 455555553
No 341
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=69.97 E-value=3.5 Score=31.85 Aligned_cols=39 Identities=8% Similarity=-0.004 Sum_probs=27.0
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcH
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTR 54 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~Ptr 54 (233)
|+=.++.++-|+|||.. ++-.+.+... .+.+++|+-|..
T Consensus 28 G~I~vitG~M~sGKTT~-Llr~~~r~~~-------~g~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEE-LIRRLRRGIY-------AKQKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHH-------TTCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHH-HHHHHHHHHH-------cCCceEEEEecc
Confidence 44456677789999966 5656666553 356789999864
No 342
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=69.90 E-value=2.5 Score=36.25 Aligned_cols=25 Identities=4% Similarity=-0.436 Sum_probs=18.3
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.+.+++.+|+|+|||.. +-.+...+
T Consensus 167 ~~~vLL~GppGtGKT~l-A~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYL-AKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHH-HHHHHHHC
T ss_pred CceEEEECCCCCCHHHH-HHHHHHHc
Confidence 36799999999999976 44444433
No 343
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=69.86 E-value=3.4 Score=29.08 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=32.9
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCC-eeEEEeCCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERH-SAICIHGDKT 141 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 141 (233)
.+..+++++|.+-..+...+..|++.|+ ++..+.||+.
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 4667899999999999999999999998 5888999854
No 344
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=69.80 E-value=1.9 Score=35.61 Aligned_cols=25 Identities=4% Similarity=-0.191 Sum_probs=18.1
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAV 31 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~ 31 (233)
+.|+-+++.+++|+|||.. ++.+..
T Consensus 121 ~~gsviLI~GpPGsGKTtL-AlqlA~ 145 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPL-VHALGE 145 (331)
T ss_dssp EESEEEEEECSCSSSHHHH-HHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHH-HHHHHH
Confidence 4566678999999999955 444443
No 345
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=69.76 E-value=1.6 Score=32.14 Aligned_cols=17 Identities=12% Similarity=-0.343 Sum_probs=14.2
Q ss_pred CCceeEecCCCCCchHH
Q psy14082 8 GCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~ 24 (233)
+.-+++.+++|||||..
T Consensus 3 ~~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45588999999999965
No 346
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=69.71 E-value=3.7 Score=41.97 Aligned_cols=41 Identities=7% Similarity=-0.100 Sum_probs=28.1
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCc
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPT 53 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~Pt 53 (233)
+.+|+.+++.+|+|+|||.. ++.+...... ++.+++++...
T Consensus 1424 i~~g~~vll~GppGtGKT~L-A~ala~ea~~-------~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTL-TLQVIAAAQR-------EGKTCAFIDAE 1464 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHH-HHHHHHHHHT-------TTCCEEEECTT
T ss_pred ccCCeEEEEECCCCCCHHHH-HHHHHHHHHH-------cCCcEEEEEcc
Confidence 45789999999999999976 4444443332 35567777644
No 347
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=69.57 E-value=1.7 Score=32.58 Aligned_cols=18 Identities=11% Similarity=0.006 Sum_probs=15.0
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.|.-+++.+++|||||..
T Consensus 24 ~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 466688999999999965
No 348
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=69.52 E-value=22 Score=30.78 Aligned_cols=21 Identities=10% Similarity=-0.312 Sum_probs=18.0
Q ss_pred CCCCCCceeEecCCCCCchHH
Q psy14082 4 PSESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 4 ~~~~g~d~i~~a~tGsGKT~~ 24 (233)
++..|+-..+.+++|+|||..
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL 167 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVL 167 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHH
T ss_pred hhccCCEEEEECCCCCCccHH
Confidence 456788899999999999965
No 349
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=69.11 E-value=1.5 Score=33.64 Aligned_cols=18 Identities=6% Similarity=-0.239 Sum_probs=11.0
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.|.=+.+.+|+|||||..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp CCCEEEEECSCC----CH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466678899999999965
No 350
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=69.00 E-value=3.2 Score=27.64 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=32.5
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCe-eEEEeCCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHS-AICIHGDKT 141 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 141 (233)
.+..+++++|.+-..+...+..|++.|+. +..+.|++.
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 46678999999988999999999999984 778888854
No 351
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=68.78 E-value=2.1 Score=31.89 Aligned_cols=18 Identities=11% Similarity=-0.149 Sum_probs=15.5
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.|.-+++.++.|||||..
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 467789999999999966
No 352
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=68.71 E-value=4.4 Score=28.33 Aligned_cols=38 Identities=13% Similarity=0.180 Sum_probs=32.2
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCe-eEEEeCCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHS-AICIHGDKT 141 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 141 (233)
.+..+++++|.+-..+...+..|.+.|+. +..+.||+.
T Consensus 89 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 89 DSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 35678999999999999999999999985 778888854
No 353
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=68.62 E-value=5.9 Score=36.93 Aligned_cols=26 Identities=8% Similarity=-0.256 Sum_probs=19.7
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
.+.+++.+++|+|||.. +-.+...+.
T Consensus 191 ~~~vlL~G~pG~GKT~l-a~~la~~l~ 216 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAI-VEGLAQRIV 216 (854)
T ss_dssp CCCCEEEECTTSCHHHH-HHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHH-HHHHHHHHh
Confidence 45799999999999965 555555554
No 354
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=68.46 E-value=2.1 Score=32.82 Aligned_cols=26 Identities=15% Similarity=-0.192 Sum_probs=19.2
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAV 31 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~ 31 (233)
+..|.-+.+.+++|+|||.. +.-+..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl-~~~l~~ 46 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQI-CHTLAV 46 (243)
T ss_dssp EETTSEEEEECCTTSSHHHH-HHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHH-HHHHHH
Confidence 45678889999999999965 333433
No 355
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=68.40 E-value=2.1 Score=32.28 Aligned_cols=18 Identities=0% Similarity=-0.503 Sum_probs=14.3
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.|.-+-+.+++|||||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 455677899999999954
No 356
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=68.39 E-value=15 Score=31.93 Aligned_cols=56 Identities=14% Similarity=0.267 Sum_probs=42.2
Q ss_pred CCeEEEEecchhHHHHHHHHHhhC--------CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc
Q psy14082 106 AFKVIVFVETKKKVEDITRALRRE--------RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD 164 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~ 164 (233)
..++||.++++.-+.++++.+++. +..+..++|+.+..... +.+..+..+|+|+|.
T Consensus 146 ~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~Iiv~Tp 209 (563)
T 3i5x_A 146 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAM---NKMNKLRPNIVIATP 209 (563)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHH---HHHHHHCCSEEEECH
T ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHH---HHHhcCCCCEEEECc
Confidence 458999999999999999888762 35677888887755543 344445789999994
No 357
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=68.24 E-value=2.9 Score=36.52 Aligned_cols=25 Identities=4% Similarity=-0.290 Sum_probs=18.4
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.+.+++.+|+|+|||.. +-.+...+
T Consensus 77 ~~~lLL~GppGtGKTtl-a~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTA-AHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHH-HHHHHHHT
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHHc
Confidence 36799999999999976 44444433
No 358
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=68.19 E-value=16 Score=32.21 Aligned_cols=56 Identities=14% Similarity=0.267 Sum_probs=42.1
Q ss_pred CCeEEEEecchhHHHHHHHHHhhC--------CCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc
Q psy14082 106 AFKVIVFVETKKKVEDITRALRRE--------RHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD 164 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~ 164 (233)
..++||.++++.-+.++++.+.+. ...+..++|+.+..... +.+..+..+|+|+|.
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~~~~~IlV~Tp 158 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAM---NKMNKLRPNIVIATP 158 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHH---HHHHHHCCSEEEECH
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHH---HHHhcCCCCEEEECH
Confidence 468999999999999998888763 35677888887755443 344445689999994
No 359
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=68.17 E-value=3 Score=31.62 Aligned_cols=14 Identities=7% Similarity=-0.365 Sum_probs=12.3
Q ss_pred eeEecCCCCCchHH
Q psy14082 11 NFSKITNYLLSPPQ 24 (233)
Q Consensus 11 ~i~~a~tGsGKT~~ 24 (233)
.++.+++|||||..
T Consensus 8 ~l~tG~pGsGKT~~ 21 (199)
T 2r2a_A 8 CLITGTPGSGKTLK 21 (199)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEEeCCCCCHHHH
Confidence 57899999999975
No 360
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=68.16 E-value=5.2 Score=32.22 Aligned_cols=22 Identities=0% Similarity=-0.232 Sum_probs=15.0
Q ss_pred eeEecCCCCCchHHhHHHHHHhh
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
++..+|+|+|||.. +-.+...+
T Consensus 51 ~L~~G~~G~GKT~l-a~~la~~l 72 (324)
T 3u61_B 51 ILHSPSPGTGKTTV-AKALCHDV 72 (324)
T ss_dssp EEECSSTTSSHHHH-HHHHHHHT
T ss_pred EEeeCcCCCCHHHH-HHHHHHHh
Confidence 46667799999976 44455444
No 361
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=68.12 E-value=24 Score=26.08 Aligned_cols=48 Identities=15% Similarity=0.163 Sum_probs=38.8
Q ss_pred CCeEEEEecc-----------hhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhC
Q psy14082 106 AFKVIVFVET-----------KKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQ 154 (233)
Q Consensus 106 ~~k~iIf~~~-----------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 154 (233)
.+.+||+.+. ...++.+.+.|+++|+.+. ++.+++.++-.+.+++|.+
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 3456666664 4788999999999999974 6677999999999999964
No 362
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=68.11 E-value=4.1 Score=30.87 Aligned_cols=39 Identities=8% Similarity=-0.028 Sum_probs=27.7
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCc
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPT 53 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~Pt 53 (233)
.|+=.++.++.|||||.- ++-.+.+... .+.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~-Ll~~i~n~~~-------~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTE-LMRRVRRFQI-------AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHH-HHHHHHHHHH-------TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHH-HHHHHHHHHH-------cCCeEEEEccc
Confidence 366678899999999955 4445544443 25679999887
No 363
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=68.09 E-value=25 Score=23.76 Aligned_cols=107 Identities=17% Similarity=0.290 Sum_probs=68.3
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCCCCee------------EEec---cchhhhchHHHhcCCCCeEEEE
Q psy14082 48 LVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPKGPQD------------CLPL---HRFVFNCQYEMAKNPAFKVIVF 112 (233)
Q Consensus 48 lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~~~~~------------lv~l---~r~~~~~~~~~~~~~~~k~iIf 112 (233)
++.+..-|....+...++.- ++++.+++++.+.+... +-.. ..+..-+.+.....+.-.+++.
T Consensus 6 vvfssdpeilkeivreikrq--gvrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvvvi 83 (162)
T 2l82_A 6 VVFSSDPEILKEIVREIKRQ--GVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVI 83 (162)
T ss_dssp EEEESCHHHHHHHHHHHHHT--TCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred EEecCCHHHHHHHHHHHHhC--CeEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEE
Confidence 45556667777777777665 78888888876542110 1110 1133344445556666555555
Q ss_pred ecc--hhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCC
Q psy14082 113 VET--KKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGK 156 (233)
Q Consensus 113 ~~~--~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 156 (233)
+.| +.-.....+..++.|..+.+++...+.+.|.++-+.|++..
T Consensus 84 vttddkewikdfieeakergvevfvvynnkdddrrkeaqqefrsdg 129 (162)
T 2l82_A 84 VTTDDKEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDG 129 (162)
T ss_dssp EECCCHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCCSS
T ss_pred EecCcHHHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhhcC
Confidence 544 33334444555678999999999999999999999998764
No 364
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=68.03 E-value=2 Score=32.19 Aligned_cols=16 Identities=0% Similarity=-0.446 Sum_probs=13.8
Q ss_pred CceeEecCCCCCchHH
Q psy14082 9 CQNFSKITNYLLSPPQ 24 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~ 24 (233)
.-+++.+++|||||..
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999965
No 365
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=68.02 E-value=1.9 Score=35.47 Aligned_cols=19 Identities=11% Similarity=-0.101 Sum_probs=15.8
Q ss_pred CCCCc--eeEecCCCCCchHH
Q psy14082 6 ESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d--~i~~a~tGsGKT~~ 24 (233)
+.|.+ +++-++||||||.+
T Consensus 74 l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 74 LEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HTTCCEEEEEECSTTSSHHHH
T ss_pred hCCCeEEEEEECCCCCCCceE
Confidence 45666 77889999999988
No 366
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=67.97 E-value=51 Score=28.41 Aligned_cols=22 Identities=9% Similarity=-0.263 Sum_probs=18.4
Q ss_pred CCCCCCCceeEecCCCCCchHH
Q psy14082 3 PPSESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 3 p~~~~g~d~i~~a~tGsGKT~~ 24 (233)
-++-+|+-..+.+++|+|||..
T Consensus 146 ~pigrGQr~~Ifgg~G~GKt~L 167 (465)
T 3vr4_D 146 NTLVRGQKLPVFSGSGLPHKEL 167 (465)
T ss_dssp SCCBTTCBCCEEECTTSCHHHH
T ss_pred cccccCCEEEEeCCCCcChHHH
Confidence 4566788888999999999965
No 367
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=67.96 E-value=3.9 Score=28.58 Aligned_cols=38 Identities=8% Similarity=0.043 Sum_probs=32.6
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCe-eEEEeCCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHS-AICIHGDKT 141 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 141 (233)
....+++++|.+-..+...+..|+..|+. +..+.|++.
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 35678999999999999999999999985 888889854
No 368
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=67.88 E-value=2.4 Score=32.20 Aligned_cols=18 Identities=6% Similarity=-0.285 Sum_probs=15.1
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.+.-+++.+++|||||..
T Consensus 4 ~~~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQ 21 (222)
T ss_dssp CSCCEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456789999999999965
No 369
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=67.85 E-value=1.9 Score=36.01 Aligned_cols=20 Identities=5% Similarity=-0.232 Sum_probs=16.0
Q ss_pred CCCCCc--eeEecCCCCCchHH
Q psy14082 5 SESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 5 ~~~g~d--~i~~a~tGsGKT~~ 24 (233)
++.|.+ +++-++||||||.+
T Consensus 100 ~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 100 ALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHTTCCEEEEEEESTTSSHHHH
T ss_pred HhCCCCEEEEEeCCCCCCccEE
Confidence 355666 77888999999987
No 370
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=67.82 E-value=1.6 Score=32.20 Aligned_cols=16 Identities=0% Similarity=-0.355 Sum_probs=13.0
Q ss_pred CceeEecCCCCCchHH
Q psy14082 9 CQNFSKITNYLLSPPQ 24 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~ 24 (233)
.-+++.+++|||||..
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 3467889999999965
No 371
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=67.68 E-value=2 Score=32.07 Aligned_cols=26 Identities=12% Similarity=-0.215 Sum_probs=18.1
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.|.-+++.+++|||||.. +--+.+++
T Consensus 3 ~~~~I~i~G~~GsGKsT~-~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQ-ATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHH-HHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHH-HHHHHHHH
Confidence 456788999999999965 33344433
No 372
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=67.67 E-value=2 Score=35.73 Aligned_cols=19 Identities=11% Similarity=-0.164 Sum_probs=15.4
Q ss_pred CCCCc--eeEecCCCCCchHH
Q psy14082 6 ESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d--~i~~a~tGsGKT~~ 24 (233)
+.|.+ +++-++||||||.+
T Consensus 91 l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 91 LEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHTCCEEEEEESSTTSSHHHH
T ss_pred hCCCceEEEEecCCCCCCCeE
Confidence 45666 67888999999988
No 373
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=67.59 E-value=2.3 Score=31.39 Aligned_cols=18 Identities=11% Similarity=-0.346 Sum_probs=15.0
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.+.-+++.+++|||||..
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356688999999999965
No 374
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=67.28 E-value=2 Score=35.91 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=15.3
Q ss_pred CCCc--eeEecCCCCCchHH
Q psy14082 7 SGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d--~i~~a~tGsGKT~~ 24 (233)
.|.+ +++-++||||||.+
T Consensus 82 ~G~n~tifAYGqTGSGKTyT 101 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYT 101 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHH
T ss_pred CCceeEEEeeCCCCCCCCEE
Confidence 3666 58999999999987
No 375
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=67.22 E-value=6.9 Score=31.02 Aligned_cols=54 Identities=6% Similarity=-0.060 Sum_probs=35.4
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF 67 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~~~~~~~~ 67 (233)
++.|.-+++.+.+|+||| ++.+-.+..-.+ +|-+++++.- .|-..|+...++.+
T Consensus 18 l~~gs~~li~g~p~~~~~-~l~~qfl~~g~~-------~Ge~~~~~~~-~e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 18 KKHSLILIHEEDASSRGK-DILFYILSRKLK-------SDNLVGMFSI-SYPLQLIIRILSRF 71 (260)
T ss_dssp CTTCEEEEEECSGGGCHH-HHHHHHHHHHHH-------TTCEEEEEEC-SSCHHHHHHHHHHT
T ss_pred CCCCcEEEEEeCCCccHH-HHHHHHHHHHHH-------CCCcEEEEEE-eCCHHHHHHHHHHc
Confidence 356788888878888887 544444333322 3667787664 46677778888777
No 376
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=67.22 E-value=2 Score=31.46 Aligned_cols=23 Identities=0% Similarity=-0.221 Sum_probs=15.9
Q ss_pred ceeEecCCCCCchHHhHHHHHHhh
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
-+++.+++|||||.. +--+.+++
T Consensus 3 ~I~i~G~~GsGKsT~-~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV-LAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHH-HHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHHH
Confidence 367899999999965 33344444
No 377
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=67.12 E-value=2.2 Score=34.93 Aligned_cols=16 Identities=6% Similarity=-0.324 Sum_probs=14.0
Q ss_pred CceeEecCCCCCchHH
Q psy14082 9 CQNFSKITNYLLSPPQ 24 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~ 24 (233)
..+++.+|+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5689999999999966
No 378
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=67.11 E-value=2 Score=35.39 Aligned_cols=19 Identities=11% Similarity=-0.155 Sum_probs=15.5
Q ss_pred CCCCc--eeEecCCCCCchHH
Q psy14082 6 ESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d--~i~~a~tGsGKT~~ 24 (233)
+.|.+ +++-++||||||.+
T Consensus 77 l~G~n~tifAYGqTGSGKTyT 97 (330)
T 2h58_A 77 IDGFNVCIFAYGQTGAGKTYT 97 (330)
T ss_dssp HTTCCEEEEEESSTTSSHHHH
T ss_pred hCCCEEEEEeECCCCCCCcEE
Confidence 45666 67889999999977
No 379
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=67.00 E-value=4.7 Score=30.55 Aligned_cols=34 Identities=12% Similarity=-0.113 Sum_probs=24.6
Q ss_pred ceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEc
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLA 51 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~ 51 (233)
.+++-..+|.|||.+ ++.+..+... .|.+++|+.
T Consensus 30 ~i~v~tG~GkGKTTa-A~GlalRA~g-------~G~rV~~vQ 63 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTA-AFGTAARAVG-------HGKNVGVVQ 63 (196)
T ss_dssp CEEEEESSSSCHHHH-HHHHHHHHHH-------TTCCEEEEE
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHHH-------CCCeEEEEE
Confidence 588889999999988 4445444443 377888884
No 380
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=66.96 E-value=2.1 Score=32.29 Aligned_cols=14 Identities=7% Similarity=-0.501 Sum_probs=12.4
Q ss_pred eeEecCCCCCchHH
Q psy14082 11 NFSKITNYLLSPPQ 24 (233)
Q Consensus 11 ~i~~a~tGsGKT~~ 24 (233)
+++.+++|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999966
No 381
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=66.73 E-value=11 Score=28.45 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=32.6
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCCC
Q psy14082 44 GPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPKG 83 (233)
Q Consensus 44 ~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~~ 83 (233)
+.++||.|++++-+..+.+.+... ++.+..++|+.+..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~ 68 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDLSQG 68 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH--TCCEEEECSSSCHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHH
Confidence 457999999999999999998876 78899999987653
No 382
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=66.68 E-value=2.4 Score=32.18 Aligned_cols=17 Identities=6% Similarity=-0.371 Sum_probs=14.6
Q ss_pred CCceeEecCCCCCchHH
Q psy14082 8 GCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~ 24 (233)
+.-+++.+++|||||..
T Consensus 4 ~~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 56688999999999965
No 383
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=66.31 E-value=2.2 Score=35.78 Aligned_cols=19 Identities=11% Similarity=-0.085 Sum_probs=15.7
Q ss_pred CCCCc--eeEecCCCCCchHH
Q psy14082 6 ESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d--~i~~a~tGsGKT~~ 24 (233)
+.|.+ +++-++||||||.+
T Consensus 81 l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 81 LAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HTTCCEEEEEECSTTSSHHHH
T ss_pred hCCCceEEEeecCCCCCCceE
Confidence 45666 67889999999988
No 384
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=66.26 E-value=2.2 Score=35.54 Aligned_cols=19 Identities=11% Similarity=-0.195 Sum_probs=15.5
Q ss_pred CCCCc--eeEecCCCCCchHH
Q psy14082 6 ESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d--~i~~a~tGsGKT~~ 24 (233)
+.|.+ +++-++||||||.+
T Consensus 86 l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 86 LEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HTTCCEEEEEECSTTSSHHHH
T ss_pred hCCCceeEEeecCCCCCCCEE
Confidence 45666 67788999999987
No 385
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=66.26 E-value=2.3 Score=31.13 Aligned_cols=15 Identities=7% Similarity=-0.458 Sum_probs=12.5
Q ss_pred ceeEecCCCCCchHH
Q psy14082 10 QNFSKITNYLLSPPQ 24 (233)
Q Consensus 10 d~i~~a~tGsGKT~~ 24 (233)
=.++.+++|||||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 456789999999965
No 386
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=66.08 E-value=2.1 Score=35.84 Aligned_cols=19 Identities=11% Similarity=-0.164 Sum_probs=15.3
Q ss_pred CCCCc--eeEecCCCCCchHH
Q psy14082 6 ESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d--~i~~a~tGsGKT~~ 24 (233)
+.|.+ +++-++||||||.+
T Consensus 76 l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 76 VDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp HTTCEEEEEEEECTTSSHHHH
T ss_pred hcCCceEEEEECCCCCCCeEe
Confidence 45666 67788999999987
No 387
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=66.00 E-value=29 Score=25.17 Aligned_cols=65 Identities=15% Similarity=0.261 Sum_probs=49.1
Q ss_pred CCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecccCcCCcCCCCccEEEEecCCC
Q psy14082 106 AFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQL 185 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~VI~~d~P~ 185 (233)
...+-|.+.+...+..+.+.|.+.|+.+..+.++.. .| ...+.|.|--.+.|+.+ +.||.+++..
T Consensus 61 ~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~---~~~v~v~t~~~~KGlEf---~~V~~~~~~~ 125 (174)
T 3dmn_A 61 RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RL---APGVIVVPSFLAKGLEF---DAVIVWNANQ 125 (174)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CC---CSSEEEEEGGGCTTCCE---EEEEEETCBT
T ss_pred CCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------cc---CCCeEEEEccccCCcCC---CEEEEecCCc
Confidence 356778899999999999999999988877765431 12 34799999999999865 6667777543
No 388
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=65.97 E-value=3.2 Score=33.78 Aligned_cols=28 Identities=4% Similarity=-0.331 Sum_probs=20.1
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
+..|.-+.+.+|+|||||.. +-++..+.
T Consensus 123 i~~Ge~vaIvGpsGsGKSTL--l~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSML--CNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHH--HHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHH--HHHHhhhc
Confidence 45688889999999999954 33444444
No 389
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=65.96 E-value=2.2 Score=31.08 Aligned_cols=18 Identities=0% Similarity=-0.367 Sum_probs=10.8
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.+.-+++.+++|||||..
T Consensus 4 ~~~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHT 21 (183)
T ss_dssp -CCEEEEECCC----CHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456788999999999966
No 390
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=65.88 E-value=2.2 Score=36.32 Aligned_cols=19 Identities=11% Similarity=-0.151 Sum_probs=15.3
Q ss_pred CCCCc--eeEecCCCCCchHH
Q psy14082 6 ESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d--~i~~a~tGsGKT~~ 24 (233)
+.|.+ +++-++||||||.+
T Consensus 151 l~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 151 FEGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp HTTCEEEEEEEESTTSSHHHH
T ss_pred hcCCceeEEeecCCCCCCCeE
Confidence 45666 67788999999987
No 391
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=65.85 E-value=2.2 Score=35.81 Aligned_cols=19 Identities=11% Similarity=-0.164 Sum_probs=15.4
Q ss_pred CCCCc--eeEecCCCCCchHH
Q psy14082 6 ESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d--~i~~a~tGsGKT~~ 24 (233)
+.|.+ +++-++||||||.+
T Consensus 98 l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 98 LQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HTTCCEEEEEEESTTSSHHHH
T ss_pred hCCCeeeEEeecCCCCCCCEe
Confidence 45666 67788999999987
No 392
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=65.82 E-value=2.2 Score=35.64 Aligned_cols=19 Identities=11% Similarity=-0.197 Sum_probs=15.4
Q ss_pred CCCCc--eeEecCCCCCchHH
Q psy14082 6 ESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d--~i~~a~tGsGKT~~ 24 (233)
+.|.+ +++-++||||||.+
T Consensus 85 l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 85 IMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HTTCEEEEEEEECTTSSHHHH
T ss_pred hCCCceEEEEeCCCCCCCceE
Confidence 45666 67788999999987
No 393
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=65.72 E-value=2.5 Score=32.87 Aligned_cols=27 Identities=7% Similarity=-0.244 Sum_probs=18.9
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
..|.-+-+.+|+|||||.. +-++..+.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTL--l~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTM--LNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHH--HHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHH--HHHHhcCC
Confidence 3577788999999999954 33444443
No 394
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=65.65 E-value=2.4 Score=31.40 Aligned_cols=14 Identities=0% Similarity=-0.399 Sum_probs=11.9
Q ss_pred eeEecCCCCCchHH
Q psy14082 11 NFSKITNYLLSPPQ 24 (233)
Q Consensus 11 ~i~~a~tGsGKT~~ 24 (233)
+.+.+|+|+|||..
T Consensus 3 i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 3 IIITGEPGVGKTTL 16 (178)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999965
No 395
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=65.61 E-value=2.3 Score=32.08 Aligned_cols=14 Identities=7% Similarity=-0.505 Sum_probs=12.4
Q ss_pred eeEecCCCCCchHH
Q psy14082 11 NFSKITNYLLSPPQ 24 (233)
Q Consensus 11 ~i~~a~tGsGKT~~ 24 (233)
+++.+++|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999966
No 396
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=65.53 E-value=2.5 Score=32.33 Aligned_cols=18 Identities=0% Similarity=-0.481 Sum_probs=14.6
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.+.-+++.+++|||||..
T Consensus 6 ~~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp -CCEEEEEECTTSSHHHH
T ss_pred cCcEEEEECCCCCCHHHH
Confidence 345689999999999965
No 397
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=65.52 E-value=2.3 Score=31.09 Aligned_cols=18 Identities=11% Similarity=0.032 Sum_probs=15.1
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.|.-+++.++.|||||..
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 466788999999999965
No 398
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=65.49 E-value=4.6 Score=28.14 Aligned_cols=38 Identities=11% Similarity=0.070 Sum_probs=32.5
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCC-eeEEEeCCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERH-SAICIHGDKT 141 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 141 (233)
.+..+++++|.+-......+..|++.|+ ++..+.|++.
T Consensus 72 ~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 72 PENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3567899999999889999999999998 5888889984
No 399
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=65.34 E-value=2.5 Score=30.27 Aligned_cols=14 Identities=14% Similarity=-0.235 Sum_probs=11.9
Q ss_pred eeEecCCCCCchHH
Q psy14082 11 NFSKITNYLLSPPQ 24 (233)
Q Consensus 11 ~i~~a~tGsGKT~~ 24 (233)
.++.+|+|+|||..
T Consensus 26 ~~I~G~NGsGKSti 39 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999965
No 400
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=65.25 E-value=2.3 Score=35.36 Aligned_cols=19 Identities=11% Similarity=-0.139 Sum_probs=15.4
Q ss_pred CCCCc--eeEecCCCCCchHH
Q psy14082 6 ESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d--~i~~a~tGsGKT~~ 24 (233)
+.|.+ +++-++||||||.+
T Consensus 74 l~G~n~tifAYGqTGSGKTyT 94 (349)
T 1t5c_A 74 IQGYNGTIFAYGQTASGKTYT 94 (349)
T ss_dssp HTTCCEEEEEEESTTSSHHHH
T ss_pred HcCCccceeeecCCCCCCCeE
Confidence 45666 67788999999987
No 401
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=65.24 E-value=2.4 Score=30.56 Aligned_cols=15 Identities=7% Similarity=-0.336 Sum_probs=13.0
Q ss_pred ceeEecCCCCCchHH
Q psy14082 10 QNFSKITNYLLSPPQ 24 (233)
Q Consensus 10 d~i~~a~tGsGKT~~ 24 (233)
-+++.+++|||||..
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 4 PIFMVGARGCGMTTV 18 (173)
T ss_dssp CEEEESCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478899999999965
No 402
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=65.22 E-value=2.8 Score=30.87 Aligned_cols=27 Identities=11% Similarity=-0.187 Sum_probs=18.6
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
..|.-+++.+++|||||.. +--+...+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~-~~~L~~~l 37 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTI-ATRLADLL 37 (186)
T ss_dssp SCCEEEEEECCTTSSHHHH-HHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHH-HHHHHHHH
Confidence 3466788999999999965 33344443
No 403
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=65.16 E-value=24 Score=25.85 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhC
Q psy14082 116 KKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQ 154 (233)
Q Consensus 116 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 154 (233)
...++.+.+.|+.+|+.+ .++.+++.++-.+.+++|.+
T Consensus 57 ~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 57 DVDHSTLVTLFKLLGYDV-HVLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp HHHHHHHHHHHHHTTEEE-EEEESCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEE-EEeeCCCHHHHHHHHHHhhh
Confidence 347889999999999987 66788999999999999976
No 404
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=65.01 E-value=5.9 Score=27.97 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=31.8
Q ss_pred CCCCeEEEEecchhHHHHHHHHHhhCCCe-eEEEeCCCC
Q psy14082 104 NPAFKVIVFVETKKKVEDITRALRRERHS-AICIHGDKT 141 (233)
Q Consensus 104 ~~~~k~iIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 141 (233)
.+..+++++|.+-..+...+..|+..|+. +..+.||+.
T Consensus 54 ~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 54 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 35678999999999999999999999985 777888743
No 405
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=65.01 E-value=2.3 Score=32.19 Aligned_cols=19 Identities=5% Similarity=-0.431 Sum_probs=15.6
Q ss_pred CCCCceeEecCCCCCchHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~ 24 (233)
..|.=+.+.+|+|+|||..
T Consensus 23 ~~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp ESSEEEEEEESTTSSHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 4566788899999999955
No 406
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=65.00 E-value=2.8 Score=36.04 Aligned_cols=18 Identities=0% Similarity=-0.352 Sum_probs=15.4
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
..+.++..+|+|+|||..
T Consensus 49 ~~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCceEEEEcCCCCCHHHH
Confidence 356799999999999966
No 407
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=64.94 E-value=2.5 Score=31.01 Aligned_cols=16 Identities=13% Similarity=-0.357 Sum_probs=13.4
Q ss_pred CceeEecCCCCCchHH
Q psy14082 9 CQNFSKITNYLLSPPQ 24 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~ 24 (233)
.-+++.+++|||||..
T Consensus 7 ~~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3578899999999965
No 408
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=64.91 E-value=2.8 Score=30.66 Aligned_cols=15 Identities=0% Similarity=-0.463 Sum_probs=13.0
Q ss_pred ceeEecCCCCCchHH
Q psy14082 10 QNFSKITNYLLSPPQ 24 (233)
Q Consensus 10 d~i~~a~tGsGKT~~ 24 (233)
-+++.+++|||||..
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTI 18 (184)
T ss_dssp SEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478899999999965
No 409
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=64.72 E-value=2.5 Score=30.76 Aligned_cols=15 Identities=0% Similarity=-0.602 Sum_probs=13.0
Q ss_pred ceeEecCCCCCchHH
Q psy14082 10 QNFSKITNYLLSPPQ 24 (233)
Q Consensus 10 d~i~~a~tGsGKT~~ 24 (233)
.+++.+++|||||..
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 578899999999965
No 410
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=64.69 E-value=3.3 Score=30.86 Aligned_cols=18 Identities=11% Similarity=-0.304 Sum_probs=14.7
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.+.-+++.+++|||||..
T Consensus 19 ~~~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345688999999999965
No 411
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=64.67 E-value=2.4 Score=35.48 Aligned_cols=19 Identities=11% Similarity=-0.171 Sum_probs=15.3
Q ss_pred CCCCc--eeEecCCCCCchHH
Q psy14082 6 ESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d--~i~~a~tGsGKT~~ 24 (233)
+.|.+ +++-++||||||.+
T Consensus 86 l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 86 FEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HTTCCEEEEEECSTTSSHHHH
T ss_pred hcCCeeEEEEeCCCCCCCceE
Confidence 45666 67788999999977
No 412
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=64.65 E-value=25 Score=28.36 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=39.1
Q ss_pred CeEEEEecc-----------hhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhC
Q psy14082 107 FKVIVFVET-----------KKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQ 154 (233)
Q Consensus 107 ~k~iIf~~~-----------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 154 (233)
+-+||+.|. ...++.+.+.|+++|+.+ .++.+++.++-.+.+++|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSV-DVKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEE-EEeeCCCHHHHHHHHHHHHh
Confidence 456666666 578999999999999996 56678999999999999964
No 413
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=64.62 E-value=2.6 Score=30.38 Aligned_cols=16 Identities=0% Similarity=-0.587 Sum_probs=13.6
Q ss_pred CceeEecCCCCCchHH
Q psy14082 9 CQNFSKITNYLLSPPQ 24 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~ 24 (233)
+.+++.+..|||||..
T Consensus 8 ~~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSL 23 (168)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4578899999999966
No 414
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=64.49 E-value=2.4 Score=35.55 Aligned_cols=19 Identities=11% Similarity=-0.101 Sum_probs=15.2
Q ss_pred CCCCc--eeEecCCCCCchHH
Q psy14082 6 ESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d--~i~~a~tGsGKT~~ 24 (233)
+.|.+ +++-++||||||.+
T Consensus 97 l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 97 LNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHTCCEEEEEECSTTSSHHHH
T ss_pred hCCceEEEEeecCCCCCccee
Confidence 44666 67788999999977
No 415
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=64.43 E-value=2.4 Score=35.98 Aligned_cols=19 Identities=11% Similarity=-0.179 Sum_probs=15.7
Q ss_pred CCCCc--eeEecCCCCCchHH
Q psy14082 6 ESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d--~i~~a~tGsGKT~~ 24 (233)
+.|.+ +++-++||||||.+
T Consensus 137 l~G~N~tifAYGqTGSGKTyT 157 (403)
T 4etp_A 137 LDGYNVAIFAYGQTGSGKTFT 157 (403)
T ss_dssp HTTCCEEEEEESCTTSSHHHH
T ss_pred hCCcceEEEEECCCCCCCceE
Confidence 46666 67788999999988
No 416
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=64.40 E-value=2.5 Score=35.10 Aligned_cols=19 Identities=11% Similarity=-0.186 Sum_probs=15.6
Q ss_pred CCCCc--eeEecCCCCCchHH
Q psy14082 6 ESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d--~i~~a~tGsGKT~~ 24 (233)
+.|.+ +++-++||||||.+
T Consensus 80 l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 80 FEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp HTTCCEEEEEESSTTSSHHHH
T ss_pred HhhcCeeEEEecccCCCceEe
Confidence 45666 67788999999987
No 417
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=64.39 E-value=5.7 Score=32.23 Aligned_cols=17 Identities=6% Similarity=-0.343 Sum_probs=13.6
Q ss_pred CCceeEecCCCCCchHH
Q psy14082 8 GCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~ 24 (233)
+.=+.+.+++|+|||..
T Consensus 104 ~~vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTS 120 (306)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CeEEEEEcCCCChHHHH
Confidence 44567889999999966
No 418
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=64.32 E-value=2.8 Score=31.01 Aligned_cols=17 Identities=12% Similarity=-0.429 Sum_probs=14.1
Q ss_pred CCceeEecCCCCCchHH
Q psy14082 8 GCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~ 24 (233)
+.-+++.+++|||||..
T Consensus 12 ~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp SCEEEEEECTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 45588899999999965
No 419
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=64.31 E-value=2.4 Score=35.73 Aligned_cols=19 Identities=11% Similarity=-0.151 Sum_probs=15.3
Q ss_pred CCCCc--eeEecCCCCCchHH
Q psy14082 6 ESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d--~i~~a~tGsGKT~~ 24 (233)
+.|.+ +++-++||||||.+
T Consensus 131 l~G~N~tifAYGQTGSGKTyT 151 (387)
T 2heh_A 131 FEGGKATCFAYGQTGSGKTHT 151 (387)
T ss_dssp HTTCEEEEEEESCTTSSHHHH
T ss_pred hcCCceEEEEecCCCCCCCeE
Confidence 45666 67788999999988
No 420
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=64.28 E-value=4.3 Score=32.45 Aligned_cols=23 Identities=9% Similarity=-0.125 Sum_probs=17.6
Q ss_pred ceeEecCCCCCchHHhHHHHHHhh
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
++++.+|+|+|||.. +-.+...+
T Consensus 48 ~~ll~G~~G~GKT~l-a~~l~~~l 70 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTA-ALALAREL 70 (327)
T ss_dssp EEEEESCTTSSHHHH-HHHHHHHH
T ss_pred eEEEECcCCCCHHHH-HHHHHHHh
Confidence 589999999999966 44455554
No 421
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=64.23 E-value=5.4 Score=40.87 Aligned_cols=39 Identities=8% Similarity=-0.147 Sum_probs=26.8
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEc
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLA 51 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~ 51 (233)
++.|+.+++.+++|||||.....-+.+.+ + .|.+++++.
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~-k-------~Ge~~~Fit 1116 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ-R-------EGKTCAFID 1116 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH-T-------TTCCEEEEC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHH-H-------cCCeEEEEE
Confidence 46789999999999999976444343333 2 255566665
No 422
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=64.18 E-value=2.6 Score=32.02 Aligned_cols=16 Identities=0% Similarity=-0.558 Sum_probs=13.4
Q ss_pred CceeEecCCCCCchHH
Q psy14082 9 CQNFSKITNYLLSPPQ 24 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~ 24 (233)
.-+.+.+++|||||..
T Consensus 6 ~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL 21 (227)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578899999999965
No 423
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=64.11 E-value=4 Score=37.38 Aligned_cols=26 Identities=8% Similarity=-0.236 Sum_probs=19.9
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.++.+++.+++|+|||.. +-.+...+
T Consensus 206 ~~~~vlL~G~~GtGKT~l-a~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAI-AEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHH-HHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHH-HHHHHHHH
Confidence 467899999999999966 44455555
No 424
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=64.05 E-value=2.6 Score=33.17 Aligned_cols=18 Identities=6% Similarity=-0.263 Sum_probs=16.1
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.|.-+++.+++|||||..
T Consensus 47 ~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp TTCCEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 488899999999999966
No 425
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=63.90 E-value=8.1 Score=32.81 Aligned_cols=31 Identities=13% Similarity=0.025 Sum_probs=22.9
Q ss_pred CCCCCCceeEecCCCCCchHHhHHHHHHhhhc
Q psy14082 4 PSESGCQNFSKITNYLLSPPQYMLPAAVHISH 35 (233)
Q Consensus 4 ~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~ 35 (233)
++-+|+-..+.++.|+|||.. +--++..+..
T Consensus 171 PigrGQR~lIfg~~g~GKT~L-l~~Ia~~i~~ 201 (427)
T 3l0o_A 171 PIGKGQRGMIVAPPKAGKTTI-LKEIANGIAE 201 (427)
T ss_dssp CCBTTCEEEEEECTTCCHHHH-HHHHHHHHHH
T ss_pred cccCCceEEEecCCCCChhHH-HHHHHHHHhh
Confidence 466788999999999999976 3445555443
No 426
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=63.84 E-value=2.5 Score=35.96 Aligned_cols=19 Identities=11% Similarity=-0.167 Sum_probs=15.6
Q ss_pred CCCCc--eeEecCCCCCchHH
Q psy14082 6 ESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d--~i~~a~tGsGKT~~ 24 (233)
+.|.+ +++-++||||||.+
T Consensus 135 l~G~n~tifAYGqTGSGKTyT 155 (412)
T 3u06_A 135 LDGYNICIFAYGQTGSGKTYT 155 (412)
T ss_dssp HTTCCEEEEEESSTTSSHHHH
T ss_pred HCCCceEEEEecCCCCCCeeE
Confidence 45666 67788999999988
No 427
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=63.56 E-value=4.9 Score=31.98 Aligned_cols=23 Identities=4% Similarity=-0.174 Sum_probs=17.5
Q ss_pred ceeEecCCCCCchHHhHHHHHHhh
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.+++.+|+|+|||.. +-.+...+
T Consensus 40 ~~ll~G~~G~GKt~l-a~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTAT-AIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHH-HHHHHHHH
T ss_pred eEEEECcCCcCHHHH-HHHHHHHh
Confidence 489999999999965 44455554
No 428
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=63.52 E-value=25 Score=25.58 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=41.1
Q ss_pred CCCCeEEEEecc---------------------hhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCC
Q psy14082 104 NPAFKVIVFVET---------------------KKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQG 155 (233)
Q Consensus 104 ~~~~k~iIf~~~---------------------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 155 (233)
.+.+.+|||.+. ...++.+...|+.+|+.+ .++.+++.++-.+.++.|...
T Consensus 21 ~~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~~ 92 (164)
T 1qtn_A 21 KPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEI-KPHDDCTVEQIYEILKIYQLM 92 (164)
T ss_dssp SSCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred CCceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHHh
Confidence 355778888873 567788999999999997 567789999999999999643
No 429
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=63.46 E-value=13 Score=27.41 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=29.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCCCC
Q psy14082 43 DGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPKGP 84 (233)
Q Consensus 43 ~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~~~ 84 (233)
.+.++||.|++++-+..+.+.++.. ++.+..+.|+.+...
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~ 84 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRD 84 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT--TCCEEEEC-------
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc--CCceEEEeCCCCHHH
Confidence 3567999999999999999998876 788999999876543
No 430
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=63.45 E-value=5.9 Score=30.92 Aligned_cols=40 Identities=8% Similarity=0.000 Sum_probs=27.3
Q ss_pred CCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHH
Q psy14082 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRE 55 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~Ptre 55 (233)
|+=.+..++-|+|||.+ ++-.+.+.. ..+.+++++-|...
T Consensus 19 g~l~v~~G~MgsGKTT~-lL~~~~r~~-------~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTE-LMRRVRRFQ-------IAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHH-HHHHHHHHH-------TTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHH-------HCCCeEEEEeecCC
Confidence 55456667779999966 555555554 34778999988653
No 431
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=63.29 E-value=58 Score=26.26 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=32.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhhcCCcEEEEEcCCCC
Q psy14082 43 DGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPK 82 (233)
Q Consensus 43 ~~~~~lil~PtreL~~Q~~~~~~~~~~~~~~~~~~gg~~~ 82 (233)
.+.++||.|++++-+..+++.++.. +..+..++|+.+.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~ 279 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE--GHEVSILHGDLQT 279 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT--TCCCEEECTTSCH
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc--CCcEEEeCCCCCH
Confidence 3568999999999999999999877 6788889988653
No 432
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=63.22 E-value=2.7 Score=32.67 Aligned_cols=43 Identities=9% Similarity=0.087 Sum_probs=27.5
Q ss_pred eCCCCHHHHHHHHHHhh---C--CCCCEEEecccCcCCcCCCCccEEEEec
Q psy14082 137 HGDKTQQDRDYVLNDFR---Q--GKAPILVATDVAARGLDVEDVNTVNIGS 182 (233)
Q Consensus 137 ~~~~~~~~r~~~~~~f~---~--g~~~iLv~T~~~~~Gldi~~v~~VI~~d 182 (233)
.++++...+..+++.+. . ...-++++|..... +. .+|.|+..+
T Consensus 155 ts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~-~~--~~d~v~~l~ 202 (237)
T 2cbz_A 155 LSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSY-LP--QVDVIIVMS 202 (237)
T ss_dssp TTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTT-GG--GSSEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHH-HH--hCCEEEEEe
Confidence 56799999988888773 1 23457777766553 33 356666553
No 433
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=63.14 E-value=4.2 Score=40.93 Aligned_cols=48 Identities=8% Similarity=-0.075 Sum_probs=34.6
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcCcHHHHHHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQI 60 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~PtreL~~Q~ 60 (233)
+++|+=+.+.+|.|||||.. +++++..... .|..|+++.+-..|-...
T Consensus 1428 ~prg~~iei~g~~~sGkttl-~~~~~a~~~~-------~g~~~~~i~~e~~~~~~~ 1475 (1706)
T 3cmw_A 1428 LPMGRIVEIYGPESSGKTTL-TLQVIAAAQR-------EGKTCAFIDAEHALDPIY 1475 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHH-HHHHHHHHHH-------TTCCEEEECTTSCCCHHH
T ss_pred CCCCCEEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEecCCCCCHHH
Confidence 57889999999999999976 5666655443 366788887765554443
No 434
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=63.11 E-value=3.1 Score=31.15 Aligned_cols=18 Identities=11% Similarity=-0.084 Sum_probs=15.4
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.|.-+++.++.|||||..
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CCCEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467789999999999965
No 435
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=63.10 E-value=2.6 Score=35.06 Aligned_cols=19 Identities=11% Similarity=-0.181 Sum_probs=15.6
Q ss_pred CCCCc--eeEecCCCCCchHH
Q psy14082 6 ESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d--~i~~a~tGsGKT~~ 24 (233)
+.|.+ +++-++||||||.+
T Consensus 89 l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 89 FDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp HTTCCEEEEEEECTTSSHHHH
T ss_pred hCCceeEEEeeCCCCCCCceE
Confidence 45666 57788999999988
No 436
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=63.05 E-value=12 Score=28.83 Aligned_cols=46 Identities=17% Similarity=0.088 Sum_probs=38.1
Q ss_pred CCeEEEEecchhHHHHHHHHHhhCCCe-eEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc
Q psy14082 106 AFKVIVFVETKKKVEDITRALRRERHS-AICIHGDKTQQDRDYVLNDFRQGKAPILVATD 164 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~ 164 (233)
+.+++++++++..++...+.+.+.+.. +..++|+.. ...+|+|+|.
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 679999999999999999999888888 888888753 2467888883
No 437
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.94 E-value=4.5 Score=33.02 Aligned_cols=22 Identities=9% Similarity=-0.180 Sum_probs=16.6
Q ss_pred eeEecCCCCCchHHhHHHHHHhh
Q psy14082 11 NFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 11 ~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.+..+|+|+|||.. +-.+...+
T Consensus 49 ~ll~Gp~G~GKTtl-a~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTST-IVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHH-HHHHHHHH
T ss_pred EEEECCCCCCHHHH-HHHHHHHH
Confidence 78999999999966 44455544
No 438
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=62.94 E-value=2.7 Score=36.10 Aligned_cols=21 Identities=5% Similarity=-0.450 Sum_probs=15.7
Q ss_pred ceeEecCCCCCchHHhHHHHHH
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAV 31 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~ 31 (233)
.+++.+|+|+|||.. +-.+..
T Consensus 52 ~vLL~GppGtGKTtl-Ar~ia~ 72 (447)
T 3pvs_A 52 SMILWGPPGTGKTTL-AEVIAR 72 (447)
T ss_dssp EEEEECSTTSSHHHH-HHHHHH
T ss_pred EEEEECCCCCcHHHH-HHHHHH
Confidence 589999999999966 333443
No 439
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=62.89 E-value=7.7 Score=33.03 Aligned_cols=36 Identities=14% Similarity=0.019 Sum_probs=32.5
Q ss_pred CCeEEEEecchhHHHHHHHHHhhCCCe-eEEEeCCCC
Q psy14082 106 AFKVIVFVETKKKVEDITRALRRERHS-AICIHGDKT 141 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 141 (233)
+.+++|.|+++..+....+.+.+.+.. +..+||+.+
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~ 169 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK 169 (472)
T ss_dssp CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCB
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcC
Confidence 679999999999999999999888888 899999864
No 440
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=62.84 E-value=4.8 Score=32.15 Aligned_cols=52 Identities=8% Similarity=-0.022 Sum_probs=45.0
Q ss_pred cCCCCeEEEEecchhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCC
Q psy14082 103 KNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQG 155 (233)
Q Consensus 103 ~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 155 (233)
..+.+.+|||.++...++.+.+.|+.+|+.+ .++.+++.++-.+.+++|...
T Consensus 40 ~~~rG~~LIinn~~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~~ 91 (272)
T 3h11_A 40 SKPLGICLIIDCIGNETELLRDTFTSLGYEV-QKFLHLSMHGISQILGQFACM 91 (272)
T ss_dssp CSSSEEEEEEESSCCCCSHHHHHHHHHTEEE-EEEESCBHHHHHHHHHHHHTC
T ss_pred CCcceEEEEECCchHHHHHHHHHHHHCCCEE-EEeeCCCHHHHHHHHHHHHhc
Confidence 3466788999999999999999999999986 556789999999999999763
No 441
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=62.77 E-value=2.7 Score=35.05 Aligned_cols=19 Identities=5% Similarity=-0.263 Sum_probs=15.5
Q ss_pred CCCCc--eeEecCCCCCchHH
Q psy14082 6 ESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d--~i~~a~tGsGKT~~ 24 (233)
+.|.+ +++-++||||||.+
T Consensus 100 l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 100 LDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HTTCCEEEEEEESTTSSHHHH
T ss_pred hCCCceEEEEECCCCCCCceE
Confidence 46666 57788999999987
No 442
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=62.72 E-value=2.8 Score=34.95 Aligned_cols=16 Identities=6% Similarity=-0.141 Sum_probs=13.2
Q ss_pred ceeEecCCCCCchHHh
Q psy14082 10 QNFSKITNYLLSPPQY 25 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~ 25 (233)
-.++.+|||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4668999999999664
No 443
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=62.65 E-value=3.3 Score=31.80 Aligned_cols=17 Identities=12% Similarity=-0.191 Sum_probs=14.6
Q ss_pred CCceeEecCCCCCchHH
Q psy14082 8 GCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~ 24 (233)
+..+++.+++|||||..
T Consensus 16 ~~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45689999999999965
No 444
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=62.57 E-value=2.8 Score=31.43 Aligned_cols=18 Identities=0% Similarity=-0.535 Sum_probs=13.9
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.|.-+-+.+++|||||..
T Consensus 5 ~~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CcEEEEEECCCCCCHHHH
Confidence 344567889999999965
No 445
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=62.51 E-value=3.1 Score=31.36 Aligned_cols=19 Identities=5% Similarity=-0.158 Sum_probs=15.8
Q ss_pred CCCCceeEecCCCCCchHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~ 24 (233)
..|.-+++.+++|||||..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4567788999999999965
No 446
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=62.25 E-value=3 Score=31.10 Aligned_cols=15 Identities=13% Similarity=-0.334 Sum_probs=12.8
Q ss_pred ceeEecCCCCCchHH
Q psy14082 10 QNFSKITNYLLSPPQ 24 (233)
Q Consensus 10 d~i~~a~tGsGKT~~ 24 (233)
-+++.+++|||||..
T Consensus 17 ~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477889999999965
No 447
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=62.24 E-value=3.1 Score=31.58 Aligned_cols=17 Identities=6% Similarity=-0.425 Sum_probs=14.4
Q ss_pred CCceeEecCCCCCchHH
Q psy14082 8 GCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~ 24 (233)
+..+++.+++|||||..
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQ 21 (217)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45688999999999965
No 448
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=62.22 E-value=3 Score=36.22 Aligned_cols=22 Identities=5% Similarity=-0.458 Sum_probs=16.4
Q ss_pred CceeEecCCCCCchHHhHHHHHH
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAV 31 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~ 31 (233)
+.+++.+|+|+|||+. +-.+..
T Consensus 50 ~gvLL~GppGtGKT~L-araia~ 71 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLL-ARAVAG 71 (476)
T ss_dssp SEEEEECCTTSSHHHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHH-HHHHHH
Confidence 4599999999999976 333443
No 449
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=62.19 E-value=47 Score=28.92 Aligned_cols=29 Identities=10% Similarity=-0.127 Sum_probs=21.7
Q ss_pred CCCCCCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 4 PSESGCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 4 ~~~~g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
++-+|.-+.+.++.|+|||.. +.-++..+
T Consensus 161 pigkGqr~gIfgg~GvGKT~L-~~~l~~~~ 189 (498)
T 1fx0_B 161 PYRRGGKIGLFGGAGVGKTVL-IMELINNI 189 (498)
T ss_dssp CCCTTCCEEEEECSSSSHHHH-HHHHHHHT
T ss_pred ccccCCeEEeecCCCCCchHH-HHHHHHHH
Confidence 566788999999999999976 44444433
No 450
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=62.19 E-value=5.9 Score=33.85 Aligned_cols=24 Identities=8% Similarity=-0.330 Sum_probs=16.6
Q ss_pred CceeEecCCCCCchHHhHHHHHHhh
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
+-+.+.+++|+|||.. +.-+...+
T Consensus 100 ~vI~ivG~~GvGKTTl-a~~La~~l 123 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTT-AAKLARYI 123 (432)
T ss_dssp CCEEEECCSSSSTTHH-HHHHHHHH
T ss_pred eEEEEECCCCCCHHHH-HHHHHHHH
Confidence 4677889999999966 33344444
No 451
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=62.10 E-value=3.8 Score=36.64 Aligned_cols=15 Identities=0% Similarity=-0.354 Sum_probs=13.9
Q ss_pred ceeEecCCCCCchHH
Q psy14082 10 QNFSKITNYLLSPPQ 24 (233)
Q Consensus 10 d~i~~a~tGsGKT~~ 24 (233)
+++..++||+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999965
No 452
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=62.00 E-value=3.2 Score=36.26 Aligned_cols=15 Identities=0% Similarity=-0.427 Sum_probs=13.5
Q ss_pred ceeEecCCCCCchHH
Q psy14082 10 QNFSKITNYLLSPPQ 24 (233)
Q Consensus 10 d~i~~a~tGsGKT~~ 24 (233)
.+++.+|+|+|||..
T Consensus 66 GvLL~GppGtGKTtL 80 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHL 80 (499)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 389999999999976
No 453
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=61.99 E-value=3 Score=29.92 Aligned_cols=14 Identities=0% Similarity=-0.441 Sum_probs=12.2
Q ss_pred eeEecCCCCCchHH
Q psy14082 11 NFSKITNYLLSPPQ 24 (233)
Q Consensus 11 ~i~~a~tGsGKT~~ 24 (233)
+++.+++|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 3 IYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEESCTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999965
No 454
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=61.88 E-value=6.8 Score=31.99 Aligned_cols=17 Identities=6% Similarity=-0.453 Sum_probs=13.3
Q ss_pred CCceeEecCCCCCchHH
Q psy14082 8 GCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~ 24 (233)
++=+.+.+++|+|||..
T Consensus 105 ~~vI~ivG~~G~GKTT~ 121 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTS 121 (320)
T ss_dssp CEEEEEESSTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44466778999999966
No 455
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=61.77 E-value=3.6 Score=32.83 Aligned_cols=23 Identities=4% Similarity=-0.383 Sum_probs=17.2
Q ss_pred CceeEecCCCCCchHHhHHHHHHh
Q psy14082 9 CQNFSKITNYLLSPPQYMLPAAVH 32 (233)
Q Consensus 9 ~d~i~~a~tGsGKT~~~~lp~l~~ 32 (233)
+.+++.+|+|+|||..+ ..+...
T Consensus 105 n~~~l~GppgtGKt~~a-~ala~~ 127 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIA-EAIAHT 127 (267)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHH
T ss_pred cEEEEECCCCCCHHHHH-HHHHhh
Confidence 35999999999999764 445543
No 456
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=61.59 E-value=3.5 Score=33.61 Aligned_cols=24 Identities=8% Similarity=-0.196 Sum_probs=17.2
Q ss_pred ceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
++++.+|+|+|||.. +-.+...+.
T Consensus 38 ~~ll~Gp~G~GKTtl-~~~la~~l~ 61 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTR-CMALLESIF 61 (354)
T ss_dssp CEEEECSTTSSHHHH-HHTHHHHHS
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHc
Confidence 489999999999965 443444343
No 457
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=61.45 E-value=3 Score=31.79 Aligned_cols=14 Identities=7% Similarity=-0.505 Sum_probs=12.1
Q ss_pred eeEecCCCCCchHH
Q psy14082 11 NFSKITNYLLSPPQ 24 (233)
Q Consensus 11 ~i~~a~tGsGKT~~ 24 (233)
+++.+|+||||+..
T Consensus 3 Iil~GpPGsGKgTq 16 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQ 16 (206)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57889999999965
No 458
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=61.43 E-value=4.1 Score=30.48 Aligned_cols=17 Identities=6% Similarity=-0.211 Sum_probs=13.6
Q ss_pred CCceeEecCCCCCchHH
Q psy14082 8 GCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~ 24 (233)
|.-+.+.+++|+|||..
T Consensus 1 G~~i~i~G~nG~GKTTl 17 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTL 17 (189)
T ss_dssp CCCEEEESCCSSCHHHH
T ss_pred CCEEEEECCCCChHHHH
Confidence 34567889999999965
No 459
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=61.00 E-value=3 Score=35.83 Aligned_cols=19 Identities=11% Similarity=-0.178 Sum_probs=15.5
Q ss_pred CCCCc--eeEecCCCCCchHH
Q psy14082 6 ESGCQ--NFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d--~i~~a~tGsGKT~~ 24 (233)
+.|.+ +++-++||||||.+
T Consensus 133 l~GyN~tIfAYGQTGSGKTyT 153 (443)
T 2owm_A 133 FEGYHTCIFAYGQTGSGKSYT 153 (443)
T ss_dssp HTTCCEEEEEESSTTSSHHHH
T ss_pred hcCCceEEEEeCCCCCCCCEE
Confidence 45666 67888999999987
No 460
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=60.88 E-value=3.2 Score=30.72 Aligned_cols=14 Identities=7% Similarity=-0.598 Sum_probs=12.1
Q ss_pred eeEecCCCCCchHH
Q psy14082 11 NFSKITNYLLSPPQ 24 (233)
Q Consensus 11 ~i~~a~tGsGKT~~ 24 (233)
+++.+++|||||..
T Consensus 3 I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 3 IAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCccCHHHH
Confidence 67889999999965
No 461
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=60.85 E-value=3.2 Score=32.18 Aligned_cols=17 Identities=0% Similarity=-0.529 Sum_probs=14.1
Q ss_pred CCceeEecCCCCCchHH
Q psy14082 8 GCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~ 24 (233)
+.-+.+.+++|||||..
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45688999999999965
No 462
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=60.76 E-value=3.7 Score=31.57 Aligned_cols=15 Identities=13% Similarity=-0.354 Sum_probs=12.4
Q ss_pred ceeEecCCCCCchHH
Q psy14082 10 QNFSKITNYLLSPPQ 24 (233)
Q Consensus 10 d~i~~a~tGsGKT~~ 24 (233)
=+++.+|+||||+..
T Consensus 31 iI~llGpPGsGKgTq 45 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQ 45 (217)
T ss_dssp EEEEECCTTCCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367889999999865
No 463
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=60.67 E-value=3.5 Score=36.32 Aligned_cols=18 Identities=6% Similarity=-0.321 Sum_probs=15.8
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.|..+++.+|+|+|||..
T Consensus 107 ~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CSCEEEEESSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577899999999999965
No 464
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=60.67 E-value=3.2 Score=30.92 Aligned_cols=14 Identities=0% Similarity=-0.652 Sum_probs=12.1
Q ss_pred eeEecCCCCCchHH
Q psy14082 11 NFSKITNYLLSPPQ 24 (233)
Q Consensus 11 ~i~~a~tGsGKT~~ 24 (233)
+.+.+++|||||..
T Consensus 4 i~i~G~~GsGKSTl 17 (204)
T 2if2_A 4 IGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCcCHHHH
Confidence 67889999999965
No 465
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=60.46 E-value=4.2 Score=30.98 Aligned_cols=18 Identities=6% Similarity=-0.313 Sum_probs=14.6
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.|.-+.+.+|+|||||..
T Consensus 21 ~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp HCSEEEEECCTTSSTTHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456677899999999965
No 466
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=60.20 E-value=3.6 Score=32.51 Aligned_cols=19 Identities=11% Similarity=-0.281 Sum_probs=15.8
Q ss_pred CCCCceeEecCCCCCchHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~ 24 (233)
..|.-+.+.+|+|||||..
T Consensus 44 ~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4577788999999999954
No 467
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=60.11 E-value=3.4 Score=30.29 Aligned_cols=14 Identities=7% Similarity=-0.403 Sum_probs=12.0
Q ss_pred eeEecCCCCCchHH
Q psy14082 11 NFSKITNYLLSPPQ 24 (233)
Q Consensus 11 ~i~~a~tGsGKT~~ 24 (233)
+++.++.|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57889999999965
No 468
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=60.07 E-value=3.4 Score=31.23 Aligned_cols=14 Identities=7% Similarity=-0.382 Sum_probs=12.3
Q ss_pred eeEecCCCCCchHH
Q psy14082 11 NFSKITNYLLSPPQ 24 (233)
Q Consensus 11 ~i~~a~tGsGKT~~ 24 (233)
+++.+++|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 3 IILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999965
No 469
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=60.01 E-value=3.4 Score=30.89 Aligned_cols=14 Identities=0% Similarity=-0.707 Sum_probs=11.9
Q ss_pred eeEecCCCCCchHH
Q psy14082 11 NFSKITNYLLSPPQ 24 (233)
Q Consensus 11 ~i~~a~tGsGKT~~ 24 (233)
+.+.++.|||||..
T Consensus 5 i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 5 VGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999965
No 470
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=59.97 E-value=3 Score=32.22 Aligned_cols=19 Identities=11% Similarity=-0.239 Sum_probs=15.4
Q ss_pred CCCCceeEecCCCCCchHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~ 24 (233)
..|.-+.+.+|+|||||..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567778899999999954
No 471
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=59.97 E-value=3 Score=32.14 Aligned_cols=25 Identities=8% Similarity=-0.340 Sum_probs=17.5
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
.|.-+.+.+|+|||||.. +=++..+
T Consensus 29 ~Ge~~~iiG~nGsGKSTL--l~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL--LYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHH--HHHHTTS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhcC
Confidence 466677899999999954 3344444
No 472
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=59.92 E-value=3.3 Score=32.49 Aligned_cols=17 Identities=0% Similarity=-0.508 Sum_probs=14.1
Q ss_pred CCceeEecCCCCCchHH
Q psy14082 8 GCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~ 24 (233)
+.-+++.+++|||||..
T Consensus 4 ~~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTF 20 (260)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CEEEEEEcCCCCCHHHH
Confidence 44588999999999965
No 473
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=59.56 E-value=7.3 Score=34.03 Aligned_cols=40 Identities=5% Similarity=-0.190 Sum_probs=0.0
Q ss_pred CCCCCceeEecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcC
Q psy14082 5 SESGCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAP 52 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~P 52 (233)
+..|.-+.+.+++|+||| +++.-++...... |.+++++++
T Consensus 278 i~~G~i~~i~G~~GsGKS-TLl~~l~g~~~~~-------G~~vi~~~~ 317 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKT-LLVSRFVENACAN-------KERAILFAY 317 (525)
T ss_dssp EESSCEEEEEECTTSSHH-HHHHHHHHHHHTT-------TCCEEEEES
T ss_pred CCCCcEEEEEeCCCCCHH-HHHHHHHHHHHhC-------CCCEEEEEE
No 474
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=59.56 E-value=3.5 Score=38.26 Aligned_cols=19 Identities=0% Similarity=-0.473 Sum_probs=16.3
Q ss_pred CCCCceeEecCCCCCchHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~ 24 (233)
..++.+++.+|+|||||..
T Consensus 236 ~~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCCEEEECSCTTSSHHHH
T ss_pred CCCCeEEEECcCCCCHHHH
Confidence 4577899999999999965
No 475
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=59.52 E-value=3.6 Score=31.56 Aligned_cols=19 Identities=16% Similarity=-0.137 Sum_probs=15.4
Q ss_pred CCCCceeEecCCCCCchHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~ 24 (233)
..|.-+.+.+|+|||||..
T Consensus 33 ~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp ETTCCEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567778899999999954
No 476
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=59.41 E-value=3.4 Score=32.38 Aligned_cols=27 Identities=4% Similarity=-0.354 Sum_probs=18.8
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
..|.-+.+.+|+|||||.. +-++..+.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTL--l~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTL--TKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHH--HHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHH--HHHHhcCC
Confidence 3566778899999999954 33444443
No 477
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=59.35 E-value=3.6 Score=30.29 Aligned_cols=14 Identities=7% Similarity=-0.394 Sum_probs=12.1
Q ss_pred eeEecCCCCCchHH
Q psy14082 11 NFSKITNYLLSPPQ 24 (233)
Q Consensus 11 ~i~~a~tGsGKT~~ 24 (233)
+++.++.|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57889999999966
No 478
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=59.19 E-value=3.3 Score=32.30 Aligned_cols=27 Identities=0% Similarity=-0.335 Sum_probs=18.8
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
..|.-+.+.+|+|||||.. +-++..+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTL--l~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTI--FSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHH--HHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHH--HHHHhcCC
Confidence 3567788899999999954 33444443
No 479
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=58.90 E-value=3.5 Score=34.30 Aligned_cols=14 Identities=7% Similarity=-0.489 Sum_probs=12.1
Q ss_pred eeEecCCCCCchHH
Q psy14082 11 NFSKITNYLLSPPQ 24 (233)
Q Consensus 11 ~i~~a~tGsGKT~~ 24 (233)
.++.++||+|||..
T Consensus 28 ~vi~G~NGaGKT~i 41 (371)
T 3auy_A 28 VAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56799999999966
No 480
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=58.90 E-value=4.1 Score=29.53 Aligned_cols=19 Identities=5% Similarity=-0.255 Sum_probs=14.5
Q ss_pred CCCCceeEecCCCCCchHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~ 24 (233)
..|.=+.+.+|.|+|||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3455577899999999944
No 481
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=58.53 E-value=6 Score=32.35 Aligned_cols=24 Identities=8% Similarity=-0.209 Sum_probs=17.3
Q ss_pred ceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
-+++.+|+|+|||.. +-.+...+.
T Consensus 40 ~~ll~G~~G~GKT~l-a~~la~~l~ 63 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSI-ARLLAKGLN 63 (373)
T ss_dssp EEEEESCTTSSHHHH-HHHHHHHHS
T ss_pred EEEEECCCCCCHHHH-HHHHHHHhC
Confidence 368999999999966 444555443
No 482
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=58.50 E-value=5.5 Score=29.72 Aligned_cols=24 Identities=4% Similarity=-0.218 Sum_probs=18.1
Q ss_pred CCCceeEecCCCCCchHHhHHHHHH
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAV 31 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~ 31 (233)
.|+-++..+++|+|||.. ++.+++
T Consensus 15 ~G~gvli~G~SGaGKStl-al~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSEL-SLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHH-HHHHHH
T ss_pred CCEEEEEEcCCCCCHHHH-HHHHHH
Confidence 477799999999999955 343443
No 483
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=58.43 E-value=4.1 Score=36.36 Aligned_cols=19 Identities=0% Similarity=-0.419 Sum_probs=16.4
Q ss_pred CCCCceeEecCCCCCchHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~ 24 (233)
..|..+++.+|+|+|||..
T Consensus 58 ~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 58 NQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HTTCCEEEECCTTSSHHHH
T ss_pred cCCCEEEEEeCCCCCHHHH
Confidence 3577899999999999966
No 484
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=58.38 E-value=3.6 Score=31.97 Aligned_cols=17 Identities=6% Similarity=-0.382 Sum_probs=14.4
Q ss_pred CCceeEecCCCCCchHH
Q psy14082 8 GCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 8 g~d~i~~a~tGsGKT~~ 24 (233)
+.-+++.+++|||||..
T Consensus 29 ~~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45689999999999965
No 485
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=57.99 E-value=29 Score=27.60 Aligned_cols=50 Identities=8% Similarity=0.083 Sum_probs=41.2
Q ss_pred CCCCeEEEEecc--------------hhHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhC
Q psy14082 104 NPAFKVIVFVET--------------KKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQ 154 (233)
Q Consensus 104 ~~~~k~iIf~~~--------------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 154 (233)
.+.+-+|||.|. ...++.+.+.|+++|+.+ .++.+++.++-.+.+++|..
T Consensus 19 ~~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~~~~ 82 (278)
T 3od5_A 19 RRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEV-KCFNDLKAEELLLKIHEVST 82 (278)
T ss_dssp SBCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHH
T ss_pred CCcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHh
Confidence 455668888875 367899999999999996 46678999999999999965
No 486
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=57.89 E-value=10 Score=28.51 Aligned_cols=32 Identities=6% Similarity=-0.117 Sum_probs=19.5
Q ss_pred EecCCCCCchHHhHHHHHHhhhccCCCCCCCCceEEEEcC
Q psy14082 13 SKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAP 52 (233)
Q Consensus 13 ~~a~tGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~lil~P 52 (233)
....+|+|||.+ ..-+...+.+ .|.+++++=|
T Consensus 7 ~s~kgGvGKTt~-a~nLa~~la~-------~G~rVll~dp 38 (224)
T 1byi_A 7 TGTDTEVGKTVA-SCALLQAAKA-------AGYRTAGYKP 38 (224)
T ss_dssp EESSTTSCHHHH-HHHHHHHHHH-------TTCCEEEECS
T ss_pred EECCCCCCHHHH-HHHHHHHHHH-------CCCCEEEEcc
Confidence 344589999976 4444444443 2567777644
No 487
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=57.89 E-value=7 Score=31.12 Aligned_cols=23 Identities=4% Similarity=-0.197 Sum_probs=17.4
Q ss_pred ceeEecCCCCCchHHhHHHHHHhh
Q psy14082 10 QNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 10 d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
++++.+|+|+|||.. +-.+...+
T Consensus 44 ~~ll~G~~G~GKt~l-a~~l~~~l 66 (323)
T 1sxj_B 44 HMIISGMPGIGKTTS-VHCLAHEL 66 (323)
T ss_dssp CEEEECSTTSSHHHH-HHHHHHHH
T ss_pred eEEEECcCCCCHHHH-HHHHHHHh
Confidence 389999999999965 44455554
No 488
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=57.72 E-value=77 Score=28.23 Aligned_cols=21 Identities=10% Similarity=-0.209 Sum_probs=18.3
Q ss_pred CCCCCCceeEecCCCCCchHH
Q psy14082 4 PSESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 4 ~~~~g~d~i~~a~tGsGKT~~ 24 (233)
++-+|.-..+.++.|+|||..
T Consensus 228 PigrGqr~~Ifgg~g~GKT~L 248 (600)
T 3vr4_A 228 PVTKGGAAAVPGPFGAGKTVV 248 (600)
T ss_dssp CCBTTCEEEEECCTTSCHHHH
T ss_pred CccCCCEEeeecCCCccHHHH
Confidence 566788899999999999976
No 489
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=57.54 E-value=3.5 Score=32.45 Aligned_cols=19 Identities=11% Similarity=-0.183 Sum_probs=15.3
Q ss_pred CCCCceeEecCCCCCchHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~ 24 (233)
..|.-+-+.+|+|||||..
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred eCCCEEEEECCCCCCHHHH
Confidence 3566778899999999954
No 490
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=57.53 E-value=4.4 Score=34.02 Aligned_cols=20 Identities=5% Similarity=-0.433 Sum_probs=16.7
Q ss_pred CCCCCceeEecCCCCCchHH
Q psy14082 5 SESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 5 ~~~g~d~i~~a~tGsGKT~~ 24 (233)
+..|+-+.+.+|+|+|||..
T Consensus 166 i~~~~~i~l~G~~GsGKSTl 185 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTL 185 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 45677889999999999954
No 491
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=57.32 E-value=4.6 Score=30.01 Aligned_cols=19 Identities=5% Similarity=-0.109 Sum_probs=15.5
Q ss_pred CCCCceeEecCCCCCchHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~ 24 (233)
..|..+.+.+++|+|||..
T Consensus 24 ~~~~~v~lvG~~g~GKSTL 42 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSA 42 (210)
T ss_dssp SCSEEEEEEECTTSSHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 4566789999999999943
No 492
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=57.30 E-value=3.9 Score=31.85 Aligned_cols=26 Identities=15% Similarity=-0.111 Sum_probs=18.2
Q ss_pred CCCCceeEecCCCCCchHHhHHHHHHhh
Q psy14082 6 ESGCQNFSKITNYLLSPPQYMLPAAVHI 33 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~~~lp~l~~l 33 (233)
..|.-+.+.+|+|||||.. +=++..+
T Consensus 30 ~~Ge~~~l~G~nGsGKSTL--l~~l~Gl 55 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTT--LSAIAGL 55 (240)
T ss_dssp ETTCEEEEECSTTSSHHHH--HHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHH--HHHHhCC
Confidence 3566778899999999954 3344444
No 493
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=57.23 E-value=5.2 Score=32.39 Aligned_cols=26 Identities=8% Similarity=-0.300 Sum_probs=18.2
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
.|.=+.+.+++|+|||.... .+..+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~--~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLG--KLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHH--HHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH--HHHHHH
Confidence 46667789999999996633 344444
No 494
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=57.14 E-value=4 Score=30.20 Aligned_cols=15 Identities=0% Similarity=-0.657 Sum_probs=12.6
Q ss_pred ceeEecCCCCCchHH
Q psy14082 10 QNFSKITNYLLSPPQ 24 (233)
Q Consensus 10 d~i~~a~tGsGKT~~ 24 (233)
-+.+.+++|||||..
T Consensus 10 ~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 10 IIGITGNIGSGKSTV 24 (203)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999965
No 495
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=57.07 E-value=4 Score=31.14 Aligned_cols=14 Identities=14% Similarity=-0.370 Sum_probs=12.2
Q ss_pred eeEecCCCCCchHH
Q psy14082 11 NFSKITNYLLSPPQ 24 (233)
Q Consensus 11 ~i~~a~tGsGKT~~ 24 (233)
+++.+++|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQ 16 (223)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999965
No 496
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=56.99 E-value=4.5 Score=31.57 Aligned_cols=18 Identities=0% Similarity=-0.505 Sum_probs=14.7
Q ss_pred CCCceeEecCCCCCchHH
Q psy14082 7 SGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~ 24 (233)
.|.-+.+.+++|||||..
T Consensus 26 ~g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTL 43 (252)
T ss_dssp TSCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 355688899999999965
No 497
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=56.84 E-value=44 Score=24.76 Aligned_cols=51 Identities=8% Similarity=0.100 Sum_probs=41.3
Q ss_pred CCCCeEEEEecch--------------hHHHHHHHHHhhCCCeeEEEeCCCCHHHHHHHHHHhhCC
Q psy14082 104 NPAFKVIVFVETK--------------KKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQG 155 (233)
Q Consensus 104 ~~~~k~iIf~~~~--------------~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 155 (233)
.+.+.+|||.+.. ..++.+.+.|+.+|+.+. +|.+++.++-.+.+++|...
T Consensus 42 ~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 106 (179)
T 3p45_A 42 RRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK-CFNDLKAEELLLKIHEVSTV 106 (179)
T ss_dssp SBCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred CccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHhhh
Confidence 4556788888753 578899999999999974 55679999999999999764
No 498
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=56.81 E-value=3.9 Score=32.64 Aligned_cols=26 Identities=12% Similarity=-0.198 Sum_probs=18.2
Q ss_pred CCCceeEecCCCCCchHHhHHHHHHhhh
Q psy14082 7 SGCQNFSKITNYLLSPPQYMLPAAVHIS 34 (233)
Q Consensus 7 ~g~d~i~~a~tGsGKT~~~~lp~l~~l~ 34 (233)
.|.-+-+.+|+|||||.. +-++..+.
T Consensus 33 ~Ge~~~iiGpnGsGKSTL--l~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL--FQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHH--HHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHcCC
Confidence 466678899999999954 33444443
No 499
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=56.35 E-value=10 Score=34.26 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=48.1
Q ss_pred CCeEEEEecchhHHHHHHHHHhh---CCCeeEEEeCCCCHHHHHHHHHHhhCCCCCEEEecc-----cCcCCcC-CCCcc
Q psy14082 106 AFKVIVFVETKKKVEDITRALRR---ERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATD-----VAARGLD-VEDVN 176 (233)
Q Consensus 106 ~~k~iIf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~~Gld-i~~v~ 176 (233)
+.++++.++++.-+.+.++.++. .|.++..++|+....++ ..+..+|+|+|+ .+.++.. +.+++
T Consensus 68 ~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~ 140 (702)
T 2p6r_A 68 GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAVS 140 (702)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGCC
T ss_pred CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhcC
Confidence 57999999999999999998843 47889999998765442 124789999995 2222322 55667
Q ss_pred EEE
Q psy14082 177 TVN 179 (233)
Q Consensus 177 ~VI 179 (233)
+||
T Consensus 141 ~vI 143 (702)
T 2p6r_A 141 CLV 143 (702)
T ss_dssp EEE
T ss_pred EEE
Confidence 666
No 500
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=56.10 E-value=4.6 Score=32.02 Aligned_cols=19 Identities=11% Similarity=-0.234 Sum_probs=15.5
Q ss_pred CCCCceeEecCCCCCchHH
Q psy14082 6 ESGCQNFSKITNYLLSPPQ 24 (233)
Q Consensus 6 ~~g~d~i~~a~tGsGKT~~ 24 (233)
..|.-+.+.+|+|+|||..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567788899999999954
Done!