RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14082
(233 letters)
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 78.8 bits (194), Expect = 5e-18
Identities = 8/81 (9%), Positives = 23/81 (28%), Gaps = 10/81 (12%)
Query: 108 KVIVFVETKKKVEDITRALRRERHSAICIHGDKTQ----------QDRDYVLNDFRQGKA 157
+ ++F +KKK +++ L +A+ + L G
Sbjct: 38 RHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDF 97
Query: 158 PILVATDVAARGLDVEDVNTV 178
++ + ++
Sbjct: 98 DSVIDCNTCVTQTVDFSLDPT 118
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 64.0 bits (155), Expect = 6e-13
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 108 KVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVAT---- 163
I++ T ++ E+I +L+ + + F +G+ L+ T
Sbjct: 27 GGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKGDYEKFVEGEIDHLIGTAHYY 80
Query: 164 DVAARGLDV-EDVNTV 178
RGLD+ E +
Sbjct: 81 GTLVRGLDLPERIRFA 96
Score = 31.7 bits (71), Expect = 0.052
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 191 ISQVIEVVQDYEKEKRLFSLIRELGKYTLI---TQESSSTLSEM 231
+ V +V + E L S++ +LG +I T E + + E
Sbjct: 1 VRNVEDVAVNDESISTLSSILEKLGTGGIIYARTGEEAEEIYES 44
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 57.6 bits (138), Expect = 1e-10
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 97 CQYEMAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDY--------V 148
+ ++ + K+IVF ++ + I L ++ A G ++++ +
Sbjct: 152 IREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLI 211
Query: 149 LNDFRQGKAPILVATDVAARGLDVEDVNTV 178
L++F +G+ +LVAT V GLDV +V+ V
Sbjct: 212 LDEFARGEFNVLVATSVGEEGLDVPEVDLV 241
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 52.8 bits (126), Expect = 2e-09
Identities = 20/90 (22%), Positives = 36/90 (40%)
Query: 107 FKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVA 166
+ +V V T + E++T L A +H + R ++ D R G LV ++
Sbjct: 32 ERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLL 91
Query: 167 ARGLDVEDVNTVNIGSLQLSANHNISQVIE 196
GLD+ +V+ V I + +
Sbjct: 92 REGLDIPEVSLVAILDADKEGFLRSERSLI 121
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 49.1 bits (116), Expect = 3e-08
Identities = 30/92 (32%), Positives = 56/92 (60%)
Query: 103 KNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVA 162
+ ++F T++KVE++T LR ++ + I+ D QQ+RD ++ +FR G + IL++
Sbjct: 24 SISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIS 83
Query: 163 TDVAARGLDVEDVNTVNIGSLQLSANHNISQV 194
TD+ ARG+DV+ V+ V L + + I ++
Sbjct: 84 TDLLARGIDVQQVSLVINYDLPANKENYIHRI 115
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 49.4 bits (117), Expect = 4e-08
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 107 FKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVA 166
+ +V TKK ED+T L+ +H + +R ++ D R GK +LV ++
Sbjct: 32 ERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLL 91
Query: 167 ARGLDVEDVNTV 178
GLD+ +V+ V
Sbjct: 92 REGLDIPEVSLV 103
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 46.6 bits (109), Expect = 5e-07
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 101 MAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPIL 160
+ + I++ ++ KVED L+ + SA H R V F++ I+
Sbjct: 25 VQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIV 84
Query: 161 VATDVAARGLDVEDVNTVNIGSLQLSANHNISQVIEVVQD 200
VAT G++ +V V + NI +
Sbjct: 85 VATVAFGMGINKPNVRFV----VHFDIPRNIESYYQETGR 120
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 44.1 bits (103), Expect = 5e-06
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 99 YEMAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAP 158
+E + K + FV + K DI LR+ I + + R
Sbjct: 171 HEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIK----TRTNDWD 226
Query: 159 ILVATDVAARGLDVEDVNTVNIGS 182
+V TD++ G + + ++
Sbjct: 227 FVVTTDISEMGANFKAERVIDPRR 250
Score = 38.4 bits (88), Expect = 4e-04
Identities = 14/73 (19%), Positives = 25/73 (34%)
Query: 42 GDGPIALVLAPTRELAQQIQTVAKEFSSALRNICIFGGTPKGPQDCLPLHRFVFNCQYEM 101
G L+LAPTR +A +++ + + I L H
Sbjct: 36 KRGLRTLILAPTRVVAAEMEEALRGLPIRYQTPAIRAEHTGREIVDLMCHATFTMRLLSP 95
Query: 102 AKNPAFKVIVFVE 114
+ P + +I+ E
Sbjct: 96 IRVPNYNLIIMDE 108
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 44.2 bits (104), Expect = 5e-06
Identities = 11/74 (14%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 108 KVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAA 167
F+ + + + +LR+ S + ++ +++ +Q K ++ATD+A
Sbjct: 38 PTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP----TIKQKKPDFILATDIAE 93
Query: 168 RGLDVEDVNTVNIG 181
G ++ ++
Sbjct: 94 MGANLCVERVLDCR 107
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 42.4 bits (99), Expect = 6e-06
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 108 KVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVATDVAA 167
+ ++F +KKK +++ L +A+ + R ++ ++VATD
Sbjct: 37 RHLIFCHSKKKCDELAAKLVALGINAVAYY-------RGLDVSVIPTNGDVVVVATDALM 89
Query: 168 RGLD 171
G
Sbjct: 90 TGFT 93
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 41.5 bits (96), Expect = 2e-05
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 99 YEMAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAP 158
+ KN F +VF +TK+ +++ LR A IHGD +Q R+ V+ F+Q K
Sbjct: 21 CRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR 80
Query: 159 ILVATDVAARGLDVEDVNTVNIGSLQLSANHNISQVIEVVQDYEKEKRLFSLI--RELGK 216
IL+ATDV +RG+DV D+N V L + + I K+ + S+I RE K
Sbjct: 81 ILIATDVMSRGIDVNDLNCVINYHLPQNPESYM-HRIGRTGRAGKKGKAISIINRREYKK 139
Query: 217 YTLITQESSSTLSEM 231
I + + ++
Sbjct: 140 LRYIERAMKLKIKKL 154
Score = 33.0 bits (74), Expect = 0.013
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 188 NHNISQVIEVVQDYEKEKRLFSLIRELGKYTLI 220
N NI Q V + E+ + L L++ Y L+
Sbjct: 1 NANIEQSYVEVNENERFEALCRLLKNKEFYGLV 33
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 39.5 bits (91), Expect = 8e-05
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 103 KNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPILVA 162
+ ++F TK+KV+ +T +R + +HGD Q++R+ ++ +FR G + +L++
Sbjct: 31 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 90
Query: 163 TDVAARGLDVEDVNTV 178
TDV ARGLDV V+ +
Sbjct: 91 TDVWARGLDVPQVSLI 106
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 206
Score = 37.5 bits (86), Expect = 7e-04
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 135 CIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNI 180
+HG +Q+++D V+ +F +G+ ILV+T V G+DV N + I
Sbjct: 69 LMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI 114
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 72
Score = 33.5 bits (77), Expect = 0.002
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 185 LSANHNIS--QVIEVVQDYEKEKRLFSLIRELGKYTLITQESSST 227
L+ + I +QD E L +I + GK+ IT S+
Sbjct: 27 LAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPSGPSS 71
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 35.3 bits (80), Expect = 0.003
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 101 MAKNPAFKVIVFVETKKKVEDITRALRRERHSAICIHGDKTQQDRDYVLNDFRQGKAPIL 160
+ ++ K+I+F + V I+ + I ++++R+ +L FR G+ +
Sbjct: 88 LERHRKDKIIIFTRHNELVYRIS-----KVFLIPAITHRTSREEREEILEGFRTGRFRAI 142
Query: 161 VATDVAARGLDVEDVNTV 178
V++ V G+DV D N
Sbjct: 143 VSSQVLDEGIDVPDANVG 160
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 211
Score = 35.0 bits (80), Expect = 0.004
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 135 CIHGDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNI 180
HG +++ + V+NDF + +LV T + G+D+ NT+ I
Sbjct: 62 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII 107
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 34.1 bits (77), Expect = 0.007
Identities = 22/122 (18%), Positives = 35/122 (28%), Gaps = 30/122 (24%)
Query: 108 KVIVFVETKKKVEDITRALRRE------------------------------RHSAICIH 137
V+VF T++ E L R A H
Sbjct: 42 GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHH 101
Query: 138 GDKTQQDRDYVLNDFRQGKAPILVATDVAARGLDVEDVNTVNIGSLQLSANHNISQVIEV 197
R V + FR+G ++VAT A G+++ + + +V E
Sbjct: 102 AGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEY 161
Query: 198 VQ 199
Q
Sbjct: 162 KQ 163
>d1o51a_ d.58.5.4 (A:) Hypothetical protein TM0021 {Thermotoga
maritima [TaxId: 2336]}
Length = 102
Score = 28.1 bits (63), Expect = 0.37
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 183 LQLSANHNISQVIEVVQDYEKEKRLFSLIRELGKYTLITQE 223
LS + I V+E+V + E+ I + L+
Sbjct: 58 FSLSPDLPI--VLEIVDEEERINLFLKEIDNIDFDGLVFTA 96
>d1j83a_ b.18.1.12 (A:) Endo-1,4-beta glucanase EngF {Clostridium
cellulovorans [TaxId: 1493]}
Length = 180
Score = 28.4 bits (63), Expect = 0.60
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 30 AVHISHQEPVKQGDGPIALVLAPTRELAQQIQTVAKEF-SSALRNICIFGGT 80
A+ + V Q DG L + + T+A + S + N+ +F G+
Sbjct: 115 AIRVWTNNFVAQTDGTYKATLTISTNDSPNFNTIATDAADSVVTNMILFVGS 166
>d1rvxa_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 323
Score = 28.2 bits (63), Expect = 0.94
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 198 VQDYEKEKRLFSLIRELGKYTLITQESSST 227
DYE+ + S + ++ + +ESS
Sbjct: 95 FIDYEELREQLSSVSSFERFEIFPKESSWP 124
>d1jrob1 d.41.1.1 (B:2-123) Xanthine dehydrogenase chain B,
N-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}
Length = 122
Score = 25.4 bits (55), Expect = 3.3
Identities = 9/52 (17%), Positives = 14/52 (26%)
Query: 8 GCQNFSKITNYLLSPPQYMLPAAVHISHQEPVKQGDGPIALVLAPTRELAQQ 59
G + P+ + V PI LV A + A+
Sbjct: 59 GVIAVFTAADLPHDNDASPAPSPEPVLATGEVHFVGQPIFLVAATSHRAARI 110
>d1miob_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Clostridium pasteurianum [TaxId: 1501]}
Length = 457
Score = 25.9 bits (56), Expect = 5.1
Identities = 11/62 (17%), Positives = 16/62 (25%), Gaps = 7/62 (11%)
Query: 83 GPQDCLPLHRFVFNCQYEMAKNPAF------KVIVFVETKKKVEDITRALRRERHSAICI 136
G Q C HR V + ++ A VF + I +
Sbjct: 43 GSQGCCSYHRTVLSRHFKEPA-MASTSSFTEGASVFGGGSNIKTAVKNIFSLYNPDIIAV 101
Query: 137 HG 138
H
Sbjct: 102 HT 103
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 25.4 bits (54), Expect = 5.3
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 191 ISQVIEVVQDYEKEKRLFSLIRELGKYTLI 220
+ Q ++D EK ++LF L+ L ++
Sbjct: 2 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVV 31
>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ
{Enterobacter aerogenes [TaxId: 548]}
Length = 271
Score = 25.4 bits (54), Expect = 6.3
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 16 TNYLLSPPQYML---PAAVHISHQEPVKQGDGP 45
Y LSP ++ +S+Q + GP
Sbjct: 228 PYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGP 260
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 24.8 bits (53), Expect = 7.6
Identities = 10/92 (10%), Positives = 18/92 (19%), Gaps = 3/92 (3%)
Query: 43 DGPIALVLAPTRELAQQI-QTVAKEFSSALRNICIFGGTPKGPQDCLPLHRFVFNCQYEM 101
G LVL P+ ++K G +
Sbjct: 32 QGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTITTGSPITYSTYGKFLADGGCS 91
Query: 102 AKNPAFKVIVFVETKKKVEDITRALRRERHSA 133
+ +I+ E + A
Sbjct: 92 GGA--YDIIICDECHSTDATSILGIGTVLDQA 121
>d1n62b1 d.41.1.1 (B:6-146) Carbon monoxide (CO) dehydrogenase
molybdoprotein, N-domain {Oligotropha carboxidovorans,
formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Length = 141
Score = 24.8 bits (53), Expect = 7.9
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 32 HISHQEPVKQGDGPIALVLAPTRELAQQ 59
+ E V + +A V+A R +A
Sbjct: 99 AVLADEKVLFQNQEVAFVVAKDRYVAAD 126
>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 23.6 bits (51), Expect = 9.0
Identities = 7/50 (14%), Positives = 20/50 (40%)
Query: 184 QLSANHNISQVIEVVQDYEKEKRLFSLIRELGKYTLITQESSSTLSEMVL 233
+ A++ + V + V + L+ + + + + +L E+ L
Sbjct: 21 RFLASNKLQIVFDFVASKGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKL 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.384
Gapped
Lambda K H
0.267 0.0399 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 812,594
Number of extensions: 35993
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 37
Length of query: 233
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,281,736
Effective search space: 193542136
Effective search space used: 193542136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)