BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14086
(324 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 144 bits (362), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 137/239 (57%), Gaps = 23/239 (9%)
Query: 82 GLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEED-VSIAKIDC 139
G++ L + +F+ +V+ + ++FYAPWCGHC+ AP ++++A+ K ++ + +AKID
Sbjct: 16 GVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDA 75
Query: 140 TQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKAD-SPDA 198
T + FD+ YPT+ ++ G+ +D ++GSRT E +V V ++ P D +P
Sbjct: 76 TSASVLASRFDVSGYPTIKILKKGQAVD-YEGSRTQEEIVAKVREVSQP-----DWTPPP 129
Query: 199 ENASXXXXXXXXXXSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDN 257
E LT ENF++V+ + ++F+APWCGHCK+LAP +E+ +L
Sbjct: 130 E----------VTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKR 179
Query: 258 KHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
I +AKVD T E DL + V G+P++ +++ G R +YNG R+ + ++++
Sbjct: 180 SPPIPLAKVDATAET--DLAKRFDVSGYPTLKIFRKG-RPYDYNGPREKYGIVDYMIEQ 235
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 96/184 (52%), Gaps = 12/184 (6%)
Query: 6 EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
+D + + ++D T L + +++GYPT+K KKG +A + G+R + + E
Sbjct: 64 KDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKG---QAVDYEGSRTQEEIVAKVREV 120
Query: 66 ISETPKEPSDKPIVNEGLVELTEESFEKYVSLGN-HFVKFYAPWCGHCQSLAPVWQELAS 124
+P P LV LT+E+F++ V+ + V+FYAPWCGHC+ LAP +++ A
Sbjct: 121 -----SQPDWTPPPEVTLV-LTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAK 174
Query: 125 HF-KTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS 183
K + +AK+D T + + FD+ YPTL G+ D + G R +V+Y+
Sbjct: 175 ELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYD-YNGPREKYGIVDYMI 233
Query: 184 KMKG 187
+ G
Sbjct: 234 EQSG 237
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 117 bits (294), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 78/112 (69%), Gaps = 5/112 (4%)
Query: 213 SLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
+LT NF+D I G FIKF+APWCGHCK LAPTWEEL K G+ IA+VDCT E
Sbjct: 11 ALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE- 69
Query: 273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
+++C++ V G+P++ +++ G + +E++G RDL+ L++F+L ++ DEL
Sbjct: 70 -RNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLS---QAKDEL 117
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 67/101 (66%), Gaps = 1/101 (0%)
Query: 83 LVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELA-SHFKTEEDVSIAKIDCTQ 141
++ LTE +F+ ++ G F+KFYAPWCGHC++LAP W+EL+ F V IA++DCT
Sbjct: 9 VLALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTA 68
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV 182
R+IC + ++ YPTLL GKK+ + G R L++L +V
Sbjct: 69 ERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 109
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 10 VTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
V I +VDCT E+ +C+ + GYPTL F+ G + S+ G RDL +L F+ Q
Sbjct: 59 VKIAEVDCTAERNICSKYSVRGYPTLLLFRGG--KKVSEHSGGRDLDSLHRFVLSQ 112
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 117 bits (293), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 78/112 (69%), Gaps = 5/112 (4%)
Query: 213 SLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
+LT NF+D I G FIKF+APWCGHCK LAPTWEEL K G+ IA+VDCT E
Sbjct: 4 ALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE- 62
Query: 273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
+++C++ V G+P++ +++ G + +E++G RDL+ L++F+L ++ DEL
Sbjct: 63 -RNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLS---QAKDEL 110
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 67/101 (66%), Gaps = 1/101 (0%)
Query: 83 LVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELA-SHFKTEEDVSIAKIDCTQ 141
++ LTE +F+ ++ G F+KFYAPWCGHC++LAP W+EL+ F V IA++DCT
Sbjct: 2 VLALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTA 61
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV 182
R+IC + ++ YPTLL GKK+ + G R L++L +V
Sbjct: 62 ERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 102
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 10 VTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
V I +VDCT E+ +C+ + GYPTL F+ G + S+ G RDL +L F+ Q
Sbjct: 52 VKIAEVDCTAERNICSKYSVRGYPTLLLFRGG--KKVSEHSGGRDLDSLHRFVLSQ 105
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 73/102 (71%), Gaps = 2/102 (1%)
Query: 213 SLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
+LT NF+D I G FIKF+APWCGHCK LAPTWEEL K G+ IA+VDCT E
Sbjct: 9 ALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE- 67
Query: 273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFIL 314
+++C++ V G+P++ +++ G + +E++G RDL+ L++F+L
Sbjct: 68 -RNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVL 108
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 67/101 (66%), Gaps = 1/101 (0%)
Query: 83 LVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELA-SHFKTEEDVSIAKIDCTQ 141
++ LTE +F+ ++ G F+KFYAPWCGHC++LAP W+EL+ F V IA++DCT
Sbjct: 7 VLALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTA 66
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV 182
R+IC + ++ YPTLL GKK+ + G R L++L +V
Sbjct: 67 ERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 107
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 10 VTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
V I +VDCT E+ +C+ + GYPTL F+ G + S+ G RDL +L F+ Q
Sbjct: 57 VKIAEVDCTAERNICSKYSVRGYPTLLLFRGG--KKVSEHSGGRDLDSLHRFVLSQ 110
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 66/110 (60%), Gaps = 6/110 (5%)
Query: 83 LVELTEESFEKYVS----LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID 138
++ELT+++FE +S G V+F+APWCGHC+ LAP ++ A+ K V +AK+D
Sbjct: 3 VLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGI--VPLAKVD 60
Query: 139 CTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGP 188
CT + + C + + YPTL G++ + G RT + +V+++ K GP
Sbjct: 61 CTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGP 110
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 66/108 (61%), Gaps = 11/108 (10%)
Query: 214 LTSENF----NDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIV-IAKVDC 268
LT +NF +D +G + ++FFAPWCGHCKRLAP +E T+L GIV +AKVDC
Sbjct: 6 LTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRL----KGIVPLAKVDC 61
Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
T + + CN+ GV G+P++ ++++G Y+G R + + + K
Sbjct: 62 TA--NTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQ 107
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 10 VTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
V + +VDCT C ++GYPTLK F+ G E+ A + G R + + + +Q
Sbjct: 54 VPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGEEAGA--YDGPRTADGIVSHLKKQ 107
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 117/290 (40%), Gaps = 45/290 (15%)
Query: 9 RVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISE 68
++ +G +DCT+ + LC I YPT F + S E + G + FI +
Sbjct: 487 QLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSIHE---YEGHHSAEQILEFIED---- 539
Query: 69 TPKEPSDKPIVNEGLVELTEESFEKYVSLGNH----FVKFYAPWCGHCQSLAPVWQELAS 124
+ N +V LT +F + V H V FY+PW Q L P W+ +A
Sbjct: 540 ---------LRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMAR 590
Query: 125 HFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
+++ +DC Q+ S C +++ YP + +F ++ + Y
Sbjct: 591 TLTGL--INVGSVDCGQYHSFCTQENVQRYPEI----------RFYPQKSSKA---YQYH 635
Query: 185 MKGPLNKKADSPDAENASXXXXXXXXXXSLTSENFNDVIKSGTV--FIKFFAPWCGHCKR 242
N+ A S + LT + FN+ + G + F+APW G +
Sbjct: 636 SYNGWNRDAYSLRSWGLGFLPQASI---DLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQN 692
Query: 243 LAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK 292
AP +E L + K + KVDC + C + G+ +PS+ +Y+
Sbjct: 693 FAPEFELLARMI---KGKVRAGKVDC--QAYPQTCQKAGIKAYPSVKLYQ 737
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 131/315 (41%), Gaps = 59/315 (18%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
+ + + + DC+ +C+D + P+L FK E G + L + F E +
Sbjct: 380 NEHIQVVRFDCSSAPGICSDLYVFQ-PSLAVFKGQGTKEYEIHHGKKILYDILAFAKESV 438
Query: 67 SE--TPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELAS 124
+ T P + P ++ E ++ V F+APW ++L P ++ ++
Sbjct: 439 NSHVTTLGPQNFPASDK----------EPWL------VDFFAPWSPPSRALLPELRKAST 482
Query: 125 HFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
+ + + +DCT H +C ++I++YPT + + + + +++G + E ++ ++
Sbjct: 483 LLYGQ--LKVGTLDCTIHEGLCNMYNIQAYPTTV-VFNQSSIHEYEGHHSAEQILEFIED 539
Query: 185 MKGPLNKKADSPDAENASXXXXXXXXXXSLTSENFNDVIKSG----TVFIKFFAPWCGHC 240
++ P SLT FN+++K + F++PW
Sbjct: 540 LRNP---------------------SVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPS 578
Query: 241 KRLAPTWEELGTKLLDNKHGIV-IAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA- 298
+ L P W+ + L G++ + VDC Q S C QE V +P I Y A
Sbjct: 579 QVLMPEWKRMARTLT----GLINVGSVDCGQYHS--FCTQENVQRYPEIRFYPQKSSKAY 632
Query: 299 ---EYNG-SRDLEEL 309
YNG +RD L
Sbjct: 633 QYHSYNGWNRDAYSL 647
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
Query: 213 SLTSENFNDVIKSGTV-FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIV-IAKVDCTQ 270
+L F+ + SG + F+ F++P H LAPTW E ++ G++ I V+C
Sbjct: 120 TLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEV----DGLLRIGAVNCGD 175
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
+ + LC +GV+ +PS++++++G+ +YNG R E L F ++H + EL
Sbjct: 176 D--RMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTEL 227
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 83 LVELTEESFEKYVSLGN-HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
++ L F+ V+ G FV FY+P H LAP W+E A + + + I ++C
Sbjct: 118 IITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAK--EVDGLLRIGAVNCGD 175
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV 182
R +C+ + SYP+L SG K+ G R+ E+LV +
Sbjct: 176 DRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFA 216
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 15/169 (8%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
D + IG V+C ++ LC + + YP+L F+ G A K+ G R +L F + +
Sbjct: 163 DGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSG--MAAVKYNGDRSKESLVAFAMQHV 220
Query: 67 SETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHF 126
T E S VN + E + G V + +C + L
Sbjct: 221 RSTVTELSTGNFVN---------AIETAFAAG---VGWLITFCSKGEDCLTSQTRLRLSG 268
Query: 127 KTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTL 175
+ V++ +DC S+C+S D + T + G L+ + S L
Sbjct: 269 MLDGLVNVGWVDCDAQDSLCKSLDTTA-STTAYFPPGATLNDREKSSVL 316
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 9 RVTIGQVDCTVEKQLCADQEITGYPTLKFFK--KGSESEASKFRGTRDLPTLTNFI 62
+V G+VDC Q C I YP++K ++ + +S + +RD T+ I
Sbjct: 707 KVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALI 762
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 6/110 (5%)
Query: 83 LVELTEESFEKYVS----LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID 138
++ELT+++FE +S G V+F+APWCGH + LAP ++ A+ K V +AK+D
Sbjct: 3 VLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKG--IVPLAKVD 60
Query: 139 CTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGP 188
CT + + C + + YPTL G++ + G RT + +V+++ K GP
Sbjct: 61 CTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGP 110
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 61/96 (63%), Gaps = 11/96 (11%)
Query: 214 LTSENF----NDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIV-IAKVDC 268
LT +NF +D +G + ++FFAPWCGH KRLAP +E T+L GIV +AKVDC
Sbjct: 6 LTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRL----KGIVPLAKVDC 61
Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR 304
T + + CN+ GV G+P++ ++++G Y+G R
Sbjct: 62 TA--NTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPR 95
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 70/113 (61%), Gaps = 6/113 (5%)
Query: 77 PIVNEGLVELT-EESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVS 133
P N+G V++ E+F++ V+ N ++FYAPWCGHC++L P ++EL + ++
Sbjct: 347 PESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIV 406
Query: 134 IAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD--KFQGSRTLETLVNYVSK 184
IAK+D T + + ++++ +PT+ + + KKL+ K++G R L ++Y+ +
Sbjct: 407 IAKMDATAN-DVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQR 458
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 65/106 (61%), Gaps = 8/106 (7%)
Query: 214 LTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
+ +ENF++++ ++ V I+F+APWCGHCK L P ++ELG KL + + IVIAK+D T
Sbjct: 357 VVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPN-IVIAKMDAT-- 413
Query: 272 LSKDLCNQEGVDGFPSIYV--YKNGVRTAEYNGSRDLEELYQFILK 315
+ D+ + V GFP+IY + +Y G R+L + ++ +
Sbjct: 414 -ANDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQR 458
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 10 VTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISET 69
V + +VDCT C ++GYPTLK F+ G EA + G R + + + +Q
Sbjct: 54 VPLAKVDCTANTNTCNKYGVSGYPTLKIFRDG--EEAGAYDGPRTADGIVSHLKKQAG-- 109
Query: 70 PKEPSDKPIVNEGLVELTEESFEKYVS 96
P+ P+ TEE F+K++S
Sbjct: 110 ---PASVPL-------RTEEEFKKFIS 126
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
S+D + I ++D T + + E+ G+PT+ F + K+ G R+L +++
Sbjct: 400 SKDPNIVIAKMDATA-NDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQR 458
Query: 65 QISETP 70
+ + P
Sbjct: 459 EATNPP 464
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 67/106 (63%), Gaps = 7/106 (6%)
Query: 214 LTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
L +++FN+ I+S V +FFAPWCGHCK +AP + + L++ I +A++DCT+
Sbjct: 19 LATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK--NITLAQIDCTE-- 74
Query: 273 SKDLCNQEGVDGFPSIYVYKNG--VRTAEYNGSRDLEELYQFILKH 316
++DLC + + GFPS+ ++KN + +Y G R E + QF++K
Sbjct: 75 NQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQ 120
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 62/104 (59%), Gaps = 8/104 (7%)
Query: 214 LTSENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
L +N ++++ V + ++APWCGHCKRLAPT++EL + ++IAK+D T+
Sbjct: 363 LVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEN 422
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAE--YNGSRDLEELYQFI 313
+ + ++G+P+I +Y G ++ Y GSR L+ L+ FI
Sbjct: 423 DVRGVV----IEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFI 462
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 56/85 (65%), Gaps = 5/85 (5%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELA-SHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW 159
V +YAPWCGHC+ LAP +QELA ++ DV IAK+D T++ + I+ YPT++
Sbjct: 380 LVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND--VRGVVIEGYPTIVL 437
Query: 160 IESGKKLDK--FQGSRTLETLVNYV 182
GKK + +QGSR+L++L +++
Sbjct: 438 YPGGKKSESVVYQGSRSLDSLFDFI 462
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 80 NEGLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID 138
+ +V+L +SF +Y+ + +F+APWCGHC+++AP + + A E+++++A+ID
Sbjct: 13 DSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETL-VEKNITLAQID 71
Query: 139 CTQHRSICQSFDIKSYPTLLWIES---GKKLDKFQGSRTLETLVNYVSKMKGP 188
CT+++ +C +I +P+L ++ +D ++G RT E +V ++ K P
Sbjct: 72 CTENQDLCMEHNIPGFPSLKIFKNSDVNNSID-YEGPRTAEAIVQFMIKQSQP 123
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 9 RVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISE 68
+T+ Q+DCT + LC + I G+P+LK FK + + + G R + F+ +Q
Sbjct: 64 NITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQP 123
Query: 69 TPKEPSDKP--IVNEGLV 84
+D P + NE V
Sbjct: 124 AVAVVADLPAYLANETFV 141
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 29 ITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
I GYPT+ + G +SE+ ++G+R L +L +FI E
Sbjct: 429 IEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKE 464
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 67/105 (63%), Gaps = 4/105 (3%)
Query: 213 SLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
SLT +NF+DV+ + + ++F+APWCGHCK+LAP +E+ +L I +AKVD T++
Sbjct: 11 SLTKDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQ 70
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
DL + V G+P++ +++ G R +YNG R+ + ++++
Sbjct: 71 T--DLAKRFDVSGYPTLKIFRKG-RPFDYNGPREKYGIVDYMIEQ 112
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Query: 84 VELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHF-KTEEDVSIAKIDCTQ 141
+ LT+++F+ V+ + V+FYAPWCGHC+ LAP +++ A K + +AK+D T+
Sbjct: 10 LSLTKDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATE 69
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKG 187
+ + FD+ YPTL G+ D + G R +V+Y+ + G
Sbjct: 70 QTDLAKRFDVSGYPTLKIFRKGRPFD-YNGPREKYGIVDYMIEQSG 114
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 10 VTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISET 69
+ + +VD T + L +++GYPTLK F+KG + + G R+ + +++ EQ
Sbjct: 60 IPLAKVDATEQTDLAKRFDVSGYPTLKIFRKGRPFD---YNGPREKYGIVDYMIEQSGSG 116
Query: 70 P 70
P
Sbjct: 117 P 117
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 70/109 (64%), Gaps = 11/109 (10%)
Query: 214 LTSENFNDVIKSGT--VFIKFFAPWCGHCKRLAPTWEELGTKLLDN--KHGIVIAKVDCT 269
+ ++N+N+++ T V I+F+APWCGHCK LAP +EELG + K +VIAKVD T
Sbjct: 12 VVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDAT 71
Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVR--TAEYNGSRDLEELYQFILKH 316
+ D+ ++ + GFP+I +Y G + Y+GSR +E+L +FI ++
Sbjct: 72 ---ANDVPDE--IQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAEN 115
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 8/89 (8%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEE---DVSIAKIDCTQHRSICQSFDIKSYPTL 157
++FYAPWCGHC++LAP ++EL + + E V IAK+D T + +I+ +PT+
Sbjct: 29 LIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDV---PDEIQGFPTI 85
Query: 158 LWIESGKKLDK--FQGSRTLETLVNYVSK 184
+G K + GSRT+E L+ ++++
Sbjct: 86 KLYPAGAKGQPVTYSGSRTVEDLIKFIAE 114
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 9 RVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
RV I +VD T EI G+PT+K + G++ + + G+R + L FI E
Sbjct: 62 RVVIAKVDATAND---VPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAEN 115
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 61/97 (62%), Gaps = 4/97 (4%)
Query: 214 LTSENFND-VIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
L NF++ V TV ++F+APWCGHCK+ AP +E++ + L DN I +AK+D T
Sbjct: 22 LNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATS-- 79
Query: 273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEEL 309
+ L ++ V G+P+I + K G + +Y+GSR EE+
Sbjct: 80 ASMLASKFDVSGYPTIKILKKG-QAVDYDGSRTQEEI 115
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 82 GLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFK-TEEDVSIAKIDC 139
G+ L + +F+ +V+ + ++FYAPWCGHC+ AP ++++AS K + +++AKID
Sbjct: 18 GVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDA 77
Query: 140 TQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGP 188
T + FD+ YPT+ ++ G+ +D + GSRT E +V V ++ P
Sbjct: 78 TSASMLASKFDVSGYPTIKILKKGQAVD-YDGSRTQEEIVAKVREVSQP 125
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTR 53
D + + ++D T L + +++GYPT+K KKG +A + G+R
Sbjct: 67 DPPIAVAKIDATSASMLASKFDVSGYPTIKILKKG---QAVDYDGSR 110
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 65/114 (57%), Gaps = 8/114 (7%)
Query: 213 SLTSENFNDVIKSGTV-FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIV-IAKVDCTQ 270
+L F+ + SG + F+ F++P C HC LAPTW E ++ G++ I V+C
Sbjct: 101 TLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEV----DGLLRIGAVNCGD 156
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
+ + LC +GV+ +PS++++++G+ +YNG R E L F ++H + EL
Sbjct: 157 D--RMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTEL 208
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 83 LVELTEESFEKYVSLGN-HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
++ L F+ V+ G FV FY+P C HC LAP W+E A + + + I ++C
Sbjct: 99 IITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAK--EVDGLLRIGAVNCGD 156
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV 182
R +C+ + SYP+L SG K+ G R+ E+LV +
Sbjct: 157 DRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFA 197
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
D + IG V+C ++ LC + + YP+L F+ G A K+ G R +L F + +
Sbjct: 144 DGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSG--MAAVKYNGDRSKESLVAFAMQHV 201
Query: 67 SETPKEPS 74
T E S
Sbjct: 202 RSTVTELS 209
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 70/113 (61%), Gaps = 6/113 (5%)
Query: 77 PIVNEGLVELT-EESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVS 133
P N+G V++ E+F++ V+ N ++FYAPWCGHC++L P ++EL + ++
Sbjct: 22 PESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIV 81
Query: 134 IAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD--KFQGSRTLETLVNYVSK 184
IAK+D T + + ++++ +PT+ + + KKL+ K++G R L ++Y+ +
Sbjct: 82 IAKMDATAN-DVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQR 133
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 65/107 (60%), Gaps = 8/107 (7%)
Query: 214 LTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
+ +ENF++++ ++ V I+F+APWCGHCK L P ++ELG KL + + IVIAK+D T
Sbjct: 32 VVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPN-IVIAKMDAT-- 88
Query: 272 LSKDLCNQEGVDGFPSIYV--YKNGVRTAEYNGSRDLEELYQFILKH 316
+ D+ + V GFP+IY + +Y G R+L + ++ +
Sbjct: 89 -ANDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQRE 134
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
S+D + I ++D T + + E+ G+PT+ F + K+ G R+L +++
Sbjct: 75 SKDPNIVIAKMDATA-NDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQR 133
Query: 65 QISETP 70
+ + P
Sbjct: 134 EATSGP 139
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 75 DKPIVNEGLVELTEESFEKYVSLGNHF-VKFYAPWCGHCQSLAPVWQELASHFKTE-EDV 132
D P + ++ L + +F + ++ + V+FYAPWCGHC++LAP + + A K E ++
Sbjct: 1 DAPEEEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEI 60
Query: 133 SIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD--KFQGSRTLETLVNYVSKMKGP 188
+AK+D T+ + Q + ++ YPT+ + +G ++ R + +VN++ K GP
Sbjct: 61 RLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGP 118
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 214 LTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
L NF + + + + ++F+APWCGHCK LAP + + KL I +AKVD T+E
Sbjct: 12 LRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE- 70
Query: 273 SKDLCNQEGVDGFPSIYVYKNG--VRTAEYNGSRDLEELYQFILKH 316
DL Q GV G+P+I ++NG EY R+ +++ ++ K
Sbjct: 71 -SDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKR 115
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
+E S + + +VD T E L + GYPT+KFF+ G + ++ R+ + N++ +
Sbjct: 55 AEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKK 114
Query: 65 Q 65
+
Sbjct: 115 R 115
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 57/93 (61%), Gaps = 8/93 (8%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCN-QEGVDGFP 286
V I+F+APWCGHCK+L P + LG K K +VIAK+D T + D+ N Q V+GFP
Sbjct: 28 VLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKD-LVIAKMDAT---ANDITNDQYKVEGFP 83
Query: 287 SIYVYKNGVRTAEY---NGSRDLEELYQFILKH 316
+IY +G + G+RDLE L +FI +H
Sbjct: 84 TIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEH 116
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160
++FYAPWCGHC+ L P++ L +K ++D+ IAK+D T + + ++ +PT+ +
Sbjct: 29 LIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYFA 88
Query: 161 ESGKKLD--KFQ-GSRTLETLVNYV 182
SG K + KF+ G+R LE L ++
Sbjct: 89 PSGDKKNPIKFEGGNRDLEHLSKFI 113
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 10 VTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFR-GTRDLPTLTNFINEQISE 68
+ I ++D T ++ G+PT+ F G + KF G RDL L+ FI+E ++
Sbjct: 60 LVIAKMDATANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATK 119
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFK--TEEDVSIAKID 138
++ELT++SF+K V S V+FYAPWCGHC++L P W AS K T+ V +A +D
Sbjct: 9 VIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVD 68
Query: 139 CTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVN 180
T ++ + + I+ +PT+ + G+ + G RT +V+
Sbjct: 69 ATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVS 110
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 63/104 (60%), Gaps = 5/104 (4%)
Query: 214 LTSENFN-DVIKSGTVF-IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIV-IAKVDCTQ 270
LT ++F+ +V+ S V+ ++F+APWCGHCK L P W +++ + G V +A VD T
Sbjct: 12 LTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDAT- 70
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFIL 314
+++ L ++ G+ GFP+I +++ G +Y+G R ++ L
Sbjct: 71 -VNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRAL 113
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 9 RVTIGQVDCTVEKQLCADQEITGYPTLKFFKKG 41
+V + VD TV + L + I G+PT+K F+KG
Sbjct: 61 KVKLAAVDATVNQVLASRYGIRGFPTIKIFQKG 93
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 99 NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL 158
N FV+FYAPWCGHC+ LAP+W +L +K E++ IAK+D T + ++ + S+PTL
Sbjct: 269 NVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTLK 326
Query: 159 WIESG--KKLDKFQGSRTLETLVNYV 182
+ + + + + G RTL+ ++
Sbjct: 327 FFPASADRTVIDYNGERTLDGFKKFL 352
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 9/104 (8%)
Query: 214 LTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
L +NF DV + VF++F+APWCGHCK+LAP W++LG D+++ IVIAK+D T
Sbjct: 254 LVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHEN-IVIAKMDSTA- 311
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGV-RTA-EYNGSRDLEELYQFI 313
+ V FP++ + RT +YNG R L+ +F+
Sbjct: 312 ---NEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFL 352
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 61/101 (60%), Gaps = 5/101 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ELT +F + V S G V+FYAPWCGHCQ L P W++ A+ K + V + ++
Sbjct: 19 VIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALK--DVVKVGAVNAD 76
Query: 141 QHRSICQSFDIKSYPTLLWIESGK-KLDKFQGSRTLETLVN 180
+H+S+ + ++ +PT+ + K K + +QG RT E +V+
Sbjct: 77 KHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVD 117
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
LT NFN +VI+S G ++F+APWCGHC+RL P W++ T L D V+ +
Sbjct: 22 LTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKD-----VVKVGAVNAD 76
Query: 272 LSKDLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFIL 314
+ L Q GV GFP+I ++ N + +Y G R E + L
Sbjct: 77 KHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAAL 120
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 99 NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL 158
N FV+FYAPWCGHC+ LAP+W +L +K E++ IAK+D T + ++ + S+PTL
Sbjct: 27 NVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTLK 84
Query: 159 WIESG--KKLDKFQGSRTLETLVNYV 182
+ + + + + G RTL+ ++
Sbjct: 85 FFPASADRTVIDYNGERTLDGFKKFL 110
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 62/104 (59%), Gaps = 9/104 (8%)
Query: 214 LTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
L +NF DV + VF++F+APWCGHCK+LAP W++LG D+++ IVIAK+D T
Sbjct: 12 LVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHEN-IVIAKMDSTAN 70
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGV-RTA-EYNGSRDLEELYQFI 313
+ + V FP++ + RT +YNG R L+ +F+
Sbjct: 71 EVEAV----KVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFL 110
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 80 NEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC 139
+ +V++T+ F+ V G V F+A WCG C+ +APV +ELA+ ++ + D I K+D
Sbjct: 2 SHAIVKVTDADFDSKVESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKAD--ILKLDV 59
Query: 140 TQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
++ S +++ S PTL+ + G+ +DK G + E L + K
Sbjct: 60 DENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDK 104
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 214 LTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS 273
+T +F+ ++SG + F+A WCG CK +AP EEL D + I K+D + S
Sbjct: 8 VTDADFDSKVESGVQLVDFWATWCGSCKMIAPVLEELAA---DYEGKADILKLDVDENPS 64
Query: 274 KDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ V P++ V+K+G + G + E L + + KH
Sbjct: 65 T--AAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 105
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 82 GLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
+V++T+ F+ V G V F+A WCG C+ +APV +ELA+ ++ + D I K+D +
Sbjct: 5 AIVKVTDADFDSKVESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKAD--ILKLDVDE 62
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
+ S +++ S PTL+ + G+ +DK G + E L + K
Sbjct: 63 NPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDK 105
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 214 LTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS 273
+T +F+ ++SG + F+A WCG CK +AP EEL D + I K+D + S
Sbjct: 9 VTDADFDSKVESGVQLVDFWATWCGTCKMIAPVLEELAA---DYEGKADILKLDVDENPS 65
Query: 274 KDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ V P++ V+K+G + G + E L + + KH
Sbjct: 66 T--AAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 106
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 101 FVKFYAPWCGHCQSLAPVWQE----LASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPT 156
V FYA WC Q L P+++E + F E V A++DC QH I Q + I YPT
Sbjct: 26 LVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPT 85
Query: 157 LLWIESGKKLDK-FQGSRTLETLVNYVSKMK 186
L +G + ++G R+++ L +Y+ + K
Sbjct: 86 LKLFRNGXXXKREYRGQRSVKALADYIRQQK 116
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 213 SLTSENFNDVIKSGTV-FIKFFAPWCGHCKRLAPTWEELGTKL---LDNKHGIVIAKVDC 268
SL +EN ++++ + V + F+A WC + L P +EE + N++ +V A+VDC
Sbjct: 9 SLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDC 68
Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTA-EYNGSRDLEELYQFILKHKVESHDEL 324
Q D+ + + +P++ +++NG EY G R ++ L +I + K + E+
Sbjct: 69 DQH--SDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQKSDPIQEI 123
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
+++V +VDC + I+ YPTLK F+ G + ++RG R + L ++I +Q
Sbjct: 58 ENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXK-REYRGQRSVKALADYIRQQK 116
Query: 67 SETPKEPSD 75
S+ +E D
Sbjct: 117 SDPIQEIRD 125
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 68.2 bits (165), Expect = 6e-12, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 82 GLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
+V++T+ F+ V G V F+A WCG C+ +APV +ELA+ ++ + D I K+D +
Sbjct: 5 AIVKVTDADFDSKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKAD--ILKLDVDE 62
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
+ S +++ S PTL+ + G+ +DK G + E L + K
Sbjct: 63 NPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDK 105
Score = 48.1 bits (113), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 214 LTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS 273
+T +F+ ++SG + F+A WCG CK +AP EEL D + I K+D + S
Sbjct: 9 VTDADFDSKVESGVQLVDFWATWCGPCKMIAPVLEELAA---DYEGKADILKLDVDENPS 65
Query: 274 KDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ V P++ V+K+G + G + E L + + KH
Sbjct: 66 T--AAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 106
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 82 GLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
+V++T+ F+ V G V F+A WCG + +APV +ELA+ ++ + D I K+D +
Sbjct: 5 AIVKVTDADFDSKVESGVQLVDFWATWCGTSKMIAPVLEELAADYEGKAD--ILKLDVDE 62
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
+ S +++ S PTL+ + G+ +DK G + E L + K
Sbjct: 63 NPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDK 105
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 214 LTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS 273
+T +F+ ++SG + F+A WCG K +AP EEL D + I K+D + S
Sbjct: 9 VTDADFDSKVESGVQLVDFWATWCGTSKMIAPVLEELAA---DYEGKADILKLDVDENPS 65
Query: 274 KDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ V P++ V+K+G + G + E L + + KH
Sbjct: 66 T--AAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 106
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 69/129 (53%), Gaps = 20/129 (15%)
Query: 83 LVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
+ ELT +SF+K + N+ V+FYAPWCGHC+ L+ +++ A V+ D
Sbjct: 19 ISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLN 78
Query: 141 QHRSICQSFDIKSYPTLLW-----IESGKKLDK------------FQGSRTLETLVNY-V 182
+++++C +D+ +PTL+ I+ K +D + G+RTL +V++ +
Sbjct: 79 KNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSL 138
Query: 183 SKMKGPLNK 191
S+++ + K
Sbjct: 139 SRIRSYVKK 147
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 52/82 (63%), Gaps = 7/82 (8%)
Query: 214 LTSENFNDVIKSG--TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIV-IAKVDCTQ 270
LT ++F+ I + T ++F+APWCGHCK+L+ T+ + +L G+V +A V+C
Sbjct: 22 LTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRL----DGVVQVAAVNCDL 77
Query: 271 ELSKDLCNQEGVDGFPSIYVYK 292
+K LC + V+GFP++ V++
Sbjct: 78 NKNKALCAKYDVNGFPTLMVFR 99
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 7 DSRVTIGQVDCTVEKQ--LCADQEITGYPTLKFFK 39
D V + V+C + K LCA ++ G+PTL F+
Sbjct: 65 DGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFR 99
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 60/98 (61%), Gaps = 3/98 (3%)
Query: 86 LTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSI 145
+T+E++ + + G+ ++FYAPWC CQ+L P W+ A + + +V+IAK+D T+ +
Sbjct: 12 ITDENWRELLE-GDWMIEFYAPWCPACQNLQPEWESFA-EWGEDLEVNIAKVDVTEQPGL 69
Query: 146 CQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS 183
F I + PT+ + G + ++QG RT + +N++S
Sbjct: 70 SGRFIINALPTIYHCKDG-EFRRYQGPRTKKDFINFIS 106
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 12/103 (11%)
Query: 214 LTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWE---ELGTKLLDNKHGIVIAKVDCTQ 270
+T EN+ ++++ G I+F+APWC C+ L P WE E G L N IAKVD T+
Sbjct: 12 ITDENWRELLE-GDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVN-----IAKVDVTE 65
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ L + ++ P+IY K+G Y G R ++ FI
Sbjct: 66 Q--PGLSGRFIINALPTIYHCKDG-EFRRYQGPRTKKDFINFI 105
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 6 EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
ED V I +VD T + L I PT+ K G E +++G R NFI+++
Sbjct: 52 EDLEVNIAKVDVTEQPGLSGRFIINALPTIYHCKDG---EFRRYQGPRTKKDFINFISDK 108
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 84 VELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
+++T+ SF V N V F+A WCG C+ +APV +E+A+ T D+++AK+D
Sbjct: 10 IKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT--DLTVAKLDVDT 67
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLN 190
+ ++F + S PTL+ + G+ + + G++ L+ +S + LN
Sbjct: 68 NPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN 116
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 221 DVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQ 279
DV+ S V + F+A WCG CK +AP EE+ T + + +AK+D + + +
Sbjct: 20 DVLSSNKPVLVDFWATWCGPCKMVAPVLEEIAT---ERATDLTVAKLDV--DTNPETARN 74
Query: 280 EGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQ 311
V P++ ++K+G G++ L +
Sbjct: 75 FQVVSIPTLILFKDGQPVKRIVGAKGKAALLR 106
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Query: 83 LVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++E+T+E+FE+ V + V F+APWCG C+ +AP+ +ELA ++ + V +D
Sbjct: 3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVD-- 60
Query: 141 QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
++ + + I+S PTLL ++G+ +D+ G++ E L + K
Sbjct: 61 ENPNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDK 104
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 214 LTSENF-NDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
+T ENF +V+KS V + F+APWCG C+ +AP EEL + G V E
Sbjct: 6 VTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEY----EGKVKVVKVNVDE 61
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ + Q G+ P++ ++KNG G++ E L + I KH
Sbjct: 62 -NPNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDKH 105
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 84 VELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
+++T+ SF V N V F+A WCG C+ +APV +E+A+ T D+++AK+D
Sbjct: 15 IKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT--DLTVAKLDVDT 72
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLN 190
+ ++F + S PTL+ + G+ + + G++ L+ +S + LN
Sbjct: 73 NPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN 121
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 221 DVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQ 279
DV+ S V + F+A WCG CK +AP EE+ T + + +AK+D + + +
Sbjct: 25 DVLSSNKPVLVDFWATWCGPCKMVAPVLEEIAT---ERATDLTVAKLDV--DTNPETARN 79
Query: 280 EGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQ 311
V P++ ++K+G G++ L +
Sbjct: 80 FQVVSIPTLILFKDGQPVKRIVGAKGKAALLR 111
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 82 GLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
+V+ T++SF S G F+APWCG C+ +APV +EL + + I KID +
Sbjct: 2 AIVKATDQSFSAETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMG--DKLKIVKIDVDE 59
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
++ + + S PTLL ++ G+ ++ G + E L V+K
Sbjct: 60 NQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNK 102
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 215 TSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK 274
T ++F+ G V F+APWCG CK +AP EEL ++ D K IV VD QE +
Sbjct: 7 TDQSFSAETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGD-KLKIVKIDVDENQETA- 64
Query: 275 DLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ GV P++ V K+G G + E L + + KH
Sbjct: 65 ---GKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKH 103
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 62.8 bits (151), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 82 GLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
+V++T+ F+ V G V F+A CG C+ +APV +ELA+ ++ + D I K+D +
Sbjct: 4 AIVKVTDADFDSKVESGVQLVDFWATACGPCKMIAPVLEELAADYEGKAD--ILKLDVDE 61
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
+ S +++ S PTL+ + G+ +DK G + E L + K
Sbjct: 62 NPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDK 104
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 214 LTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS 273
+T +F+ ++SG + F+A CG CK +AP EEL D + I K+D + S
Sbjct: 8 VTDADFDSKVESGVQLVDFWATACGPCKMIAPVLEELAA---DYEGKADILKLDVDENPS 64
Query: 274 KDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ V P++ V+K+G + G + E L + + KH
Sbjct: 65 T--AAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 105
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160
V F+APWCG C+ +AP +Q A+ + V +AKID H ++ I+ P +
Sbjct: 68 LVDFWAPWCGPCRQMAPQFQAAAATLAGQ--VRLAKIDTQAHPAVAGRHRIQGIPAFILF 125
Query: 161 ESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKA 193
G++L + G+R LV +V +G L +A
Sbjct: 126 HKGRELARAAGARPASELVGFV---RGKLGARA 155
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
+ + F+APWCG C+++AP ++ L + +AK+D + + + + G P+
Sbjct: 67 LLVDFWAPWCGPCRQMAPQFQAAAATLAGQ---VRLAKID--TQAHPAVAGRHRIQGIPA 121
Query: 288 IYVYKNGVRTAEYNGSRDLEELYQFI 313
++ G A G+R EL F+
Sbjct: 122 FILFHKGRELARAAGARPASELVGFV 147
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIY 289
++FFA WCGH APTW+EL + D + + +A +DC +E + +C + + GFP++
Sbjct: 35 VEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVR 94
Query: 290 VY----KNGVRTAEYNGSRDLEELYQFILKHKVESHDE 323
+ KNG +++ L + L +ESH +
Sbjct: 95 FFQAFTKNGSGATLPGAGANVQTL-RMRLIDALESHRD 131
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKT-EEDVSIAKIDCTQ--HRSICQSFDIKSYPTLL 158
V+F+A WCGH + AP W+ELA+ K +++A +DC + + ++C+ F+I +PT+
Sbjct: 35 VEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVR 94
Query: 159 WIESGKK 165
+ ++ K
Sbjct: 95 FFQAFTK 101
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 1 MLNDSEDSR--VTIGQVDCTVE--KQLCADQEITGYPTLKFFK 39
+ ND +D R + + +DC E +C + I G+PT++FF+
Sbjct: 55 LANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQ 97
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 84 VELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
+++T+ SF V N V F+A WCG + +APV +E+A+ T D+++AK+D
Sbjct: 12 IKVTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERAT--DLTVAKLDVDT 69
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLN 190
+ ++F + S PTL+ + G+ + + G++ L+ +S + LN
Sbjct: 70 NPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN 118
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 221 DVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQ 279
DV+ S V + F+A WCG K +AP EE+ T + + +AK+D + + +
Sbjct: 22 DVLSSNKPVLVDFWATWCGPSKMVAPVLEEIAT---ERATDLTVAKLDV--DTNPETARN 76
Query: 280 EGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQ 311
V P++ ++K+G G++ L +
Sbjct: 77 FQVVSIPTLILFKDGQPVKRIVGAKGKAALLR 108
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 84 VELTEESF-EKYVSLGNHFV-KFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
++LT ++F EK + H+V FYAPWCG CQ+ AP ++ LA K + V K+DC
Sbjct: 6 IDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGK--VRAGKVDCQA 63
Query: 142 HRSICQSFDIKSYPTL 157
+ CQ IK+YP++
Sbjct: 64 YPQTCQKAGIKAYPSV 79
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 214 LTSENFNDVIKSGTV--FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
LT + FN+ + G + F+APWCG C+ AP +E L + K + KVDC +
Sbjct: 8 LTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMI---KGKVRAGKVDC--Q 62
Query: 272 LSKDLCNQEGVDGFPSIYVYK 292
C + G+ +PS+ +Y+
Sbjct: 63 AYPQTCQKAGIKAYPSVKLYQ 83
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 1 MLNDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFK--KGSESEASKFRGTRDLPTL 58
+L +V G+VDC Q C I YP++K ++ + +S + +RD T+
Sbjct: 45 LLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTI 104
Query: 59 TNFI 62
I
Sbjct: 105 AALI 108
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ LT++SF+ V + G V F+A WCGHC+ +AP+ E+A ++ + +++AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
Q+ + I+ PTLL ++G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGE 85
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
LT ++F+ DV+K+ G + + F+A WCGHCK +AP +E+ D G + +AK++ Q
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P++ ++KNG A G+ +L +F+
Sbjct: 63 --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIY 289
++FFA WCGHC APTW L + + + +A +DC +E + +C + GFP++
Sbjct: 35 VEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVR 94
Query: 290 VY----KNGVRTAEYNGSRDLEELYQFILKHKVESHD 322
+ NG D++ L + ++ HD
Sbjct: 95 FFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHHD 131
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKT-EEDVSIAKIDCTQ--HRSICQSFDIKSYPTL 157
V+F+A WCGHC + AP W LA K + +A +DC + + ++C+ F+I +PT+
Sbjct: 35 VEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTV 93
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 82 GLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
+V+ T++SF S G F+APWCG + +APV +EL + + I KID +
Sbjct: 2 AIVKATDQSFSAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMG--DKLKIVKIDVDE 59
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
++ + + S PTLL ++ G+ ++ G + E L V+K
Sbjct: 60 NQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNK 102
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 215 TSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK 274
T ++F+ G V F+APWCG K +AP EEL ++ D K IV VD QE +
Sbjct: 7 TDQSFSAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDENQETA- 64
Query: 275 DLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILK 315
+ GV P++ V K+G G + E L + + K
Sbjct: 65 ---GKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNK 102
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 82 GLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
+V+ T++SF S G F+APWCG + +APV +EL + + I KID +
Sbjct: 2 AIVKATDQSFSAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMG--DKLKIVKIDVDE 59
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
++ + + S PTLL ++ G+ ++ G + E L V+K
Sbjct: 60 NQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNK 102
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 215 TSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK 274
T ++F+ G V F+APWCG K +AP EEL ++ D K IV VD QE +
Sbjct: 7 TDQSFSAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDENQETA- 64
Query: 275 DLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ GV P++ V K+G G + E L + + KH
Sbjct: 65 ---GKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKH 103
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 88 EESFEKYVS-LGNHFV--KFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
+E F K ++ GN V FYA WCG C+ +AP +EL+ ++ DV K+D +
Sbjct: 8 QEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELS---QSMSDVVFLKVDVDECED 64
Query: 145 ICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK 186
I Q I PT L++++G+KLD G+ + L+ V K K
Sbjct: 65 IAQDNQIACMPTFLFMKNGQKLDSLSGAN-YDKLLELVEKNK 105
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
V I F+A WCG CK +AP EEL + D +V KVD + +D+ + P+
Sbjct: 23 VVIDFYATWCGPCKMIAPKLEELSQSMSD----VVFLKVDVDE--CEDIAQDNQIACMPT 76
Query: 288 IYVYKNGVRTAEYNGSRDLEELYQFILKHK 317
KNG + +G+ + ++L + + K+K
Sbjct: 77 FLFMKNGQKLDSLSGA-NYDKLLELVEKNK 105
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160
V F+APWCG C+ +APV ELA + + +++ K++ + I ++I+S PT+L+
Sbjct: 22 MVDFWAPWCGPCKLIAPVIDELAKEYSGK--IAVYKLNTDEAPGIATQYNIRSIPTVLFF 79
Query: 161 ESGKKLDKFQGSRTLETLVNYVSK 184
++G++ + G+ TL + + K
Sbjct: 80 KNGERKESIIGAVPKSTLTDSIEK 103
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
V + F+APWCG CK +AP +EL ++ IA + + + Q + P+
Sbjct: 21 VMVDFWAPWCGPCKLIAPVIDELA-----KEYSGKIAVYKLNTDEAPGIATQYNIRSIPT 75
Query: 288 IYVYKNGVRTAEYNGS 303
+ +KNG R G+
Sbjct: 76 VLFFKNGERKESIIGA 91
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160
V F+APWCG C+ +APV ELA + + +++ K++ + I ++I+S PT+L+
Sbjct: 21 MVDFWAPWCGPCKLIAPVIDELAKEYSGK--IAVYKLNTDEAPGIATQYNIRSIPTVLFF 78
Query: 161 ESGKKLDKFQGSRTLETLVNYVSK 184
++G++ + G+ TL + + K
Sbjct: 79 KNGERKESIIGAVPKSTLTDSIEK 102
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
V + F+APWCG CK +AP +EL ++ IA + + + Q + P+
Sbjct: 20 VMVDFWAPWCGPCKLIAPVIDELA-----KEYSGKIAVYKLNTDEAPGIATQYNIRSIPT 74
Query: 288 IYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ +KNG R G+ L I K+
Sbjct: 75 VLFFKNGERKESIIGAVPKSTLTDSIEKY 103
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ LT++SF+ V + G V F+A WCG C+ +AP+ E+A ++ + +++AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
Q+ + I+S PTLL ++G+
Sbjct: 62 QNPGTAPKYGIRSIPTLLLFKNGE 85
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
LT ++F+ DV+K+ G + + F+A WCG CK +AP +E+ D G + +AK++ Q
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ P++ ++KNG A G+ +L +F+
Sbjct: 63 --NPGTAPKYGIRSIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ LT+ESF+ V + G V F+A WCG C+ +AP+ E+A ++ + +++AK++
Sbjct: 4 IIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
Q+ + I+ PTLL ++G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGE 85
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
LT E+F+ DV+K+ G + + F+A WCG CK +AP +E+ D G + +AK++ Q
Sbjct: 7 LTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P++ ++KNG A G+ +L +F+
Sbjct: 63 --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ LT++SFE V + G V F+A WCG C+ +AP+ E+A ++ + +++AK++
Sbjct: 4 IIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
Q+ + I+ PTLL ++G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGE 85
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 214 LTSENF-NDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
LT ++F DV+K+ G + + F+A WCG CK +AP +E+ D G + +AK++ Q
Sbjct: 7 LTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P++ ++KNG A G+ +L +F+
Sbjct: 63 --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ LTE+SF+ V + G V F+A WCG C+ +AP+ E+A ++ + +++AK++
Sbjct: 4 IIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
Q+ + I+ PTLL ++G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGE 85
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
LT ++F+ DV+K+ G + + F+A WCG CK +AP +E+ D G + +AK++ Q
Sbjct: 7 LTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P++ ++KNG A G+ +L +F+
Sbjct: 63 --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 87 TEESFEKYVSLGNH-----FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
T++ F+ +++ G + F A WCG C+ +APV+ E A F K+D +
Sbjct: 13 TKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP---GAIFLKVDVDE 69
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM 185
+ + +++++++ PT L+I+ G+K+D G R + V+ M
Sbjct: 70 LKDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDIHTKIVALM 113
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
V I F A WCG C+ +AP + E K G + KVD EL KD+ V+ P+
Sbjct: 31 VIIDFTASWCGPCRVIAPVFAEYAKKF----PGAIFLKVD-VDEL-KDVAEAYNVEAMPT 84
Query: 288 IYVYKNGVRTAEYNGSR 304
K+G + G R
Sbjct: 85 FLFIKDGEKVDSVVGGR 101
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F+A WCG C+ L P +++ + K V +AK+D H + +++ + PT+L ++
Sbjct: 36 VDFHAQWCGPCKILGPRLEKMVA--KQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMK 93
Query: 162 SGKKLDKFQGSRTLETLVNYVSKMKG 187
+G +DKF G + + L ++ K+ G
Sbjct: 94 NGDVVDKFVGIKDEDQLEAFLKKLIG 119
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 218 NFND-VIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQELSK 274
+F D V+ S T V + F A WCG CK L P E K++ +HG +V+AKVD
Sbjct: 22 DFQDRVVNSETPVVVDFHAQWCGPCKILGPRLE----KMVAKQHGKVVMAKVDIDDH--T 75
Query: 275 DLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILK 315
DL + V P++ KNG ++ G +D ++L F+ K
Sbjct: 76 DLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKK 116
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
Query: 80 NEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI 137
+E ++ LT++SF+ V + G V F+A WCG C+ +AP+ E+A ++ + +++AK+
Sbjct: 1 SEKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKL 58
Query: 138 DCTQHRSICQSFDIKSYPTLLWIESGK 164
+ Q+ + I+ PTLL ++G+
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGE 85
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
LT ++F+ DV+K+ G + + F+A WCG CK +AP +E+ D G + +AK++ Q
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P++ ++KNG A G+ +L +F+
Sbjct: 63 --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 57.4 bits (137), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160
V F+APWCG C+ +APV E+A +K + + K++ + ++ + I+S PT++
Sbjct: 23 LVDFWAPWCGPCRIIAPVVDEIAGEYK--DKLKCVKLNTDESPNVASEYGIRSIPTIMVF 80
Query: 161 ESGKKLDKFQGSRTLETLVNYVSK 184
+ GKK + G+ T+V V K
Sbjct: 81 KGGKKCETIIGAVPKATIVQTVEK 104
Score = 45.4 bits (106), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 213 SLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
++ + F +V+ S V + F+APWCG C+ +AP +E+ + D + V
Sbjct: 5 AVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK-----LKCVKLNT 59
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ S ++ ++ G+ P+I V+K G + G+ + Q + K+
Sbjct: 60 DESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKY 105
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ LT++SF+ V + G V F+A WCG C+ +AP+ +E+A ++ + +++AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
Q+ + I+ PTLL ++G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGE 85
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
LT ++F+ DV+K+ G + + F+A WCG CK +AP EE+ D G + +AK++ Q
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P++ ++KNG A G+ +L +F+
Sbjct: 63 --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 79 VNEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAK 136
+++ ++ LT++SF+ V + G V F+A WCG C+ +AP+ E+A ++ + +++AK
Sbjct: 10 MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAK 67
Query: 137 IDCTQHRSICQSFDIKSYPTLLWIESGK 164
++ Q+ + I+ PTLL ++G+
Sbjct: 68 LNIDQNPGTAPKYGIRGIPTLLLFKNGE 95
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
LT ++F+ DV+K+ G + + F+A WCG CK +AP +E+ D G + +AK++ Q
Sbjct: 17 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 72
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P++ ++KNG A G+ +L +F+
Sbjct: 73 --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 113
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
V + FFA WCG CK ++P EL T+ DN +V+ KVD + +D+ + + P+
Sbjct: 28 VVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDE--CEDIAMEYNISSMPT 82
Query: 288 IYVYKNGVRTAEYNGS 303
KNGV+ E+ G+
Sbjct: 83 FVFLKNGVKVEEFAGA 98
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 104 FYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG 163
F+A WCG C+ ++P EL++ F ++V + K+D + I ++I S PT +++++G
Sbjct: 32 FFATWCGPCKMISPKLVELSTQF--ADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNG 89
Query: 164 KKLDKFQGSRT 174
K+++F G+
Sbjct: 90 VKVEEFAGANA 100
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ LT++SF+ V + G V F+A WCG C+ +AP+ E+A ++ + +++AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
Q+ + I+ PTLL ++G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGE 85
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
LT ++F+ DV+K+ G + + F+A WCG C+ +AP +E+ D G + +AK++ Q
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P++ ++KNG A G+ +L +F+
Sbjct: 63 --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ LT++SF+ V + G V F+A WCG C+ +AP+ E+A ++ + +++AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESG 163
Q+ + I+ PTLL ++G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
LT ++F+ DV+K+ G + + F+A WCG CK +AP +E+ D G + +AK++ Q
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P++ ++KNG A G+ +L +F+
Sbjct: 63 --NPGTAPKYGIRGIPTLLLFKNGDVAATKVGALSKGQLKEFL 103
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ LT++SF+ V + G V F+A WCG C+ +AP+ E+A ++ + +++AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
Q+ + I+ PTLL ++G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGE 85
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
LT ++F+ DV+K+ G + + F+A WCG CK +AP +E+ D G + +AK++ Q
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P++ ++KNG A G+ +L +F+
Sbjct: 63 --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ LT++SF+ V + G V F+A WCG C+ +AP+ E+A ++ + +++AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
Q+ + I+ PTLL ++G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGE 85
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 58/102 (56%), Gaps = 7/102 (6%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
LT ++F+ DV+K+ G + + F+A WCG CK +AP +E+ D + + +AK++ Q
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD---DYQGKLTVAKLNIDQ- 62
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P++ ++KNG A G+ +L +F+
Sbjct: 63 -NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ LT++SF+ V + G V F+A WCG C+ +AP+ E+A ++ + +++AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
Q+ + I+ PTLL ++G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGE 85
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
LT ++F+ DV+K+ G + + F+A WCG CK +AP +E+ D G + +AK++ Q
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P++ ++KNG A G+ +L +F+
Sbjct: 63 --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F+A WCG C+++AP + LA K +V AK+D Q+ + + + PT ++I+
Sbjct: 24 VDFFAQWCGPCRNIAPKVEALA---KEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIK 80
Query: 162 SGKKLDKFQGS 172
GK++D+F G+
Sbjct: 81 DGKEVDRFSGA 91
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD 283
K + + FFA WCG C+ +AP E L ++ + + AKVD Q +++ + V
Sbjct: 18 KGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPE----VEFAKVDVDQ--NEEAAAKYSVT 71
Query: 284 GFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317
P+ K+G ++G+ + +L + I +HK
Sbjct: 72 AMPTFVFIKDGKEVDRFSGANE-TKLRETITRHK 104
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ LT++SF+ V + G V F+A WCG C+ +AP+ E+A ++ + +++AK++
Sbjct: 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 62
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
Q+ + I+ PTLL ++G+
Sbjct: 63 QNPGTAPKYGIRGTPTLLLFKNGE 86
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
LT ++F+ DV+K+ G + + F+A WCG CK +AP +E+ D G + +AK++ Q
Sbjct: 8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 63
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P++ ++KNG A G+ +L +F+
Sbjct: 64 --NPGTAPKYGIRGTPTLLLFKNGEVAATKVGALSKGQLKEFL 104
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ LT++SF+ V + G V F+A WCG C+ +AP+ E+A ++ + +++AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
Q+ + I+ PTLL ++G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGE 85
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 58/102 (56%), Gaps = 7/102 (6%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
LT ++F+ DV+K+ G + + F+A WCG CK +AP +E+ + + + +AK++ Q
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEY---QGKLTVAKLNIDQ- 62
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P++ ++KNG A G+ +L +F+
Sbjct: 63 -NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ LT++SF+ V + G V F+A WCG C+ +AP+ E+A ++ + +++AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
Q+ + I+ PTLL ++G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGE 85
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
LT ++F+ DV+K+ G + + F+A WCG CK +AP +E+ D G + +AK++ Q
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P++ ++KNG A G+ +L +F+
Sbjct: 63 --NPGTAPKYGIRGIPTLLLFKNGEVAACKVGALSKGQLKEFL 103
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ LT++SF+ V + G V F+A WCG C+ +AP+ E+A ++ + +++AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
Q+ + I+ PTLL ++G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGE 85
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
LT ++F+ DV+K+ G + + F+A WCG CK +AP +E+ D G + +AK++ Q
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P++ ++KNG A G+ +L F+
Sbjct: 63 --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKCFL 103
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ LT++SF+ V + G V F+A WCG C+ +AP+ E+A ++ + +++AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
Q+ + I+ PTLL ++G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGE 85
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
LT ++F+ DV+K+ G + + F+A WCG CK +AP +E+ D G + +AK++ Q
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P++ ++KNG A G+ +L F+
Sbjct: 63 --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKCFL 103
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ LT++SF+ V + G V F+A WCG C+ +AP+ ++A ++ + +++AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
Q+ + I+ PTLL ++G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGE 85
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
LT ++F+ DV+K+ G + + F+A WCG CK +AP +++ D G + +AK++ Q
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P++ ++KNG A G+ +L +F+
Sbjct: 63 --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
+ F A WCG C+ +APV+ E A F K+D + + + + +++++ PT L+I+
Sbjct: 41 IDFTASWCGPCRFIAPVFAEYAKKF---PGAVFLKVDVDELKEVAEKYNVEAMPTFLFIK 97
Query: 162 SGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADS 195
G + DK G+R + L N + K G A +
Sbjct: 98 DGAEADKVVGARK-DDLQNTIVKHVGATAASASA 130
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 227 TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP 286
V I F A WCG C+ +AP + E K G V KVD EL K++ + V+ P
Sbjct: 38 VVIIDFTASWCGPCRFIAPVFAEYAKKF----PGAVFLKVD-VDEL-KEVAEKYNVEAMP 91
Query: 287 SIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ K+G + G+R ++L I+KH
Sbjct: 92 TFLFIKDGAEADKVVGARK-DDLQNTIVKH 120
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 10/113 (8%)
Query: 84 VELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
+E+T+++F++ +LG H V F+A WC C+ +AP+ +E+A + E + +AK+D
Sbjct: 5 IEVTDQNFDE--TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEY--EGKLLVAKLDVD 60
Query: 141 QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKA 193
++ + + S PT++ + G+ ++ G++ NY +K++ L A
Sbjct: 61 ENPKTAXRYRVXSIPTVILFKDGQPVEVLVGAQPKR---NYQAKIEKHLPATA 110
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 214 LTSENFNDVI-KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
+T +NF++ + + V + F+A WC C+ +AP EE+ + + +++AK+D +
Sbjct: 7 VTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAK---EYEGKLLVAKLDVDE-- 61
Query: 273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ + V P++ ++K+G G++ I KH
Sbjct: 62 NPKTAXRYRVXSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKH 105
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 10/113 (8%)
Query: 84 VELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
+E+T+++F++ +LG H V F+A WC C+ +AP+ +E+A + E + +AK+D
Sbjct: 4 IEVTDQNFDE--TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEY--EGKLLVAKLDVD 59
Query: 141 QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKA 193
++ + + S PT++ + G+ ++ G++ NY +K++ L A
Sbjct: 60 ENPKTAXRYRVXSIPTVILFKDGQPVEVLVGAQPKR---NYQAKIEKHLPATA 109
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 214 LTSENFNDVI-KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
+T +NF++ + + V + F+A WC C+ +AP EE+ + + +++AK+D +
Sbjct: 6 VTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAK---EYEGKLLVAKLDVDE-- 60
Query: 273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ + V P++ ++K+G G++ I KH
Sbjct: 61 NPKTAXRYRVXSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKH 104
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 55.5 bits (132), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
V + FFA WCG CK ++P EL T+ DN +V+ KVD + +D+ + + P+
Sbjct: 23 VVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDE--CEDIAMEYNISSMPT 77
Query: 288 IYVYKNGVRTAEYNGS 303
KNGV+ E+ G+
Sbjct: 78 FVFLKNGVKVEEFAGA 93
Score = 53.9 bits (128), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
+ F+A WCG C+ ++P EL++ F ++V + K+D + I ++I S PT ++++
Sbjct: 25 LDFFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDECEDIAMEYNISSMPTFVFLK 82
Query: 162 SGKKLDKFQGS 172
+G K+++F G+
Sbjct: 83 NGVKVEEFAGA 93
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ +T++SF+ V + G V F+A WCG C+ +AP+ E+A ++ + +++AK++
Sbjct: 4 IIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
Q+ + I+ PTLL ++G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGE 85
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
+T ++F+ DV+K+ G + + F+A WCG CK +AP +E+ D G + +AK++ Q
Sbjct: 7 VTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P++ ++KNG A G+ +L +F+
Sbjct: 63 --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIK 152
KY V FYA WCG C+ +AP+ ELA + + + I K+D + + + +F I+
Sbjct: 34 KYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ--IVIYKVDTEKEQELAGAFGIR 91
Query: 153 SYPTLLWIESGKKLDKFQGS 172
S P++L+I K + QG+
Sbjct: 92 SIPSILFIPMEGKPEMAQGA 111
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
+ F+A WCG CK +AP +EL K D + IVI KVD +E ++L G+ PS
Sbjct: 41 AIVDFYADWCGPCKMVAPILDEL-AKEYDGQ--IVIYKVDTEKE--QELAGAFGIRSIPS 95
Query: 288 I 288
I
Sbjct: 96 I 96
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160
V F+APWCG + +APV ELA + + +++ K++ + I ++I+S PT+L+
Sbjct: 22 MVDFWAPWCGPSKLIAPVIDELAKEYSGK--IAVYKLNTDEAPGIATQYNIRSIPTVLFF 79
Query: 161 ESGKKLDKFQGSRTLETLVNYVSK 184
++G++ + G+ TL + + K
Sbjct: 80 KNGERKESIIGAVPKSTLTDSIEK 103
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
V + F+APWCG K +AP +EL ++ IA + + + Q + P+
Sbjct: 21 VMVDFWAPWCGPSKLIAPVIDELA-----KEYSGKIAVYKLNTDEAPGIATQYNIRSIPT 75
Query: 288 IYVYKNGVRTAEYNGS 303
+ +KNG R G+
Sbjct: 76 VLFFKNGERKESIIGA 91
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 80 NEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI 137
+E + +++ SF++ V + G V F+A WCG C+ + P E+ F + V++AK+
Sbjct: 1 SEHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGK--VTVAKV 58
Query: 138 DCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV 182
+ + ++ ++S PTL+ + GK +DK G+ L +V
Sbjct: 59 NIDDNPETPNAYQVRSIPTLMLVRDGKVIDKKVGALPKSQLKAWV 103
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 220 NDVIK-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCN 278
DV+K SG V + F+A WCG CK + P E+G + + +AKV+ + + N
Sbjct: 14 QDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGK---VTVAKVNIDD--NPETPN 68
Query: 279 QEGVDGFPSIYVYKNG 294
V P++ + ++G
Sbjct: 69 AYQVRSIPTLMLVRDG 84
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 83 LVELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
++ T E+ +K + + F+APWCG C+S AP++ E A+ + V K++
Sbjct: 40 VINATAETLDKLLQDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGK--VRFVKVNTEA 97
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGS 172
++ F I+S PT+ +GK +D G+
Sbjct: 98 EPALSTRFRIRSIPTIXLYRNGKXIDXLNGA 128
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIY 289
I F+APWCG C+ AP + E + + KV+ E + L + + P+I
Sbjct: 60 IDFWAPWCGPCRSFAPIFAETAA---ERAGKVRFVKVNTEAEPA--LSTRFRIRSIPTIX 114
Query: 290 VYKNGVRTAEYNGS 303
+Y+NG NG+
Sbjct: 115 LYRNGKXIDXLNGA 128
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 83 LVELTEESFEKYVSLGN-HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
+VE E+ F + V+ V F+APWCG C+ ++P+ +ELA + + K++ +
Sbjct: 35 VVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGR--LKVVKVNVDE 92
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGS---RTLE 176
H + + ++S PTL+ G + + G+ R LE
Sbjct: 93 HPGLAARYGVRSVPTLVLFRRGAPVATWVGASPRRVLE 130
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 220 NDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQ 279
+V + + FFAPWCG C+ ++P EEL D+ + + KV+ + L +
Sbjct: 45 QEVAGAPLTLVDFFAPWCGPCRLVSPILEELAR---DHAGRLKVVKVNVDEH--PGLAAR 99
Query: 280 EGVDGFPSIYVYKNGVRTAEYNGS---RDLEELYQFILKHK 317
GV P++ +++ G A + G+ R LEE + L+ +
Sbjct: 100 YGVRSVPTLVLFRRGAPVATWVGASPRRVLEERLRPYLEGR 140
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 53.9 bits (128), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 86 LTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
LT+ +F++ + G V F+A WCG C+ +APV +E A + V++AK++ ++
Sbjct: 5 LTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAE--AHADKVTVAKLNVDENPE 62
Query: 145 ICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETL 178
F I S PTL+ + G+ + + G + E L
Sbjct: 63 TTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQL 96
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 213 SLTSENFNDVIK-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
+LT NF I+ G V + F+A WCG C+ +AP EE D + +AK++ +
Sbjct: 4 TLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDE- 59
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEEL 309
+ + +Q G+ P++ ++K G + G + E+L
Sbjct: 60 -NPETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQL 96
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ LT++SF+ V + G V F+A WCG + +AP+ E+A ++ + +++AK++
Sbjct: 24 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGK--LTVAKLNID 81
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
Q+ + I+ PTLL ++G+
Sbjct: 82 QNPGTAPKYGIRGIPTLLLFKNGE 105
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
LT ++F+ DV+K+ G + + F+A WCG K +AP +E+ D G + +AK++ Q
Sbjct: 27 LTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIA----DEYQGKLTVAKLNIDQ 82
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P++ ++KNG A G+ +L +F+
Sbjct: 83 --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 123
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 79 VNEGLVELTEESFEKYVSLGN-HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI 137
V E + L ++F+++++ V F+A WC C LAPV +ELA+ + V+ K+
Sbjct: 4 VKEPVKHLNSKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYP---QVAFGKL 60
Query: 138 DCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGS 172
+ + + I + I S PT+++ ++G+ +D+ G+
Sbjct: 61 NTEESQDIAMRYGIMSLPTIMFFKNGELVDQILGA 95
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 214 LTSENFNDVI-KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
L S+NF++ I K+ V + F+A WC C LAP EEL G E
Sbjct: 11 LNSKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYPQVAFG------KLNTEE 64
Query: 273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEEL 309
S+D+ + G+ P+I +KNG + G+ EE+
Sbjct: 65 SQDIAMRYGIMSLPTIMFFKNGELVDQILGAVPREEI 101
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ LT++SF+ V + G V F+A WCG + +AP+ E+A ++ + +++AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
Q+ + I+ PTLL ++G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGE 85
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
LT ++F+ DV+K+ G + + F+A WCG K +AP +E+ D G + +AK++ Q
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P++ ++KNG A G+ +L +F+
Sbjct: 63 --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 49/80 (61%), Gaps = 5/80 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F A WC C+ +AP++ ELA F +V+ K+D + +++ + +++++ PT ++++
Sbjct: 31 VDFTASWCPPCKMIAPIFAELAKKF---PNVTFLKVDVDELKAVAEEWNVEAMPTFIFLK 87
Query: 162 SGKKLDKFQGSRT--LETLV 179
GK +DK G+ L TLV
Sbjct: 88 DGKLVDKTVGADKDGLPTLV 107
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
+ + F A WC CK +AP + EL K + + KVD EL K + + V+ P+
Sbjct: 29 IVVDFTASWCPPCKMIAPIFAELAKKFPN----VTFLKVD-VDEL-KAVAEEWNVEAMPT 82
Query: 288 IYVYKNGVRTAEYNGSRDLEELYQFILKH 316
K+G + G+ D + L + KH
Sbjct: 83 FIFLKDGKLVDKTVGA-DKDGLPTLVAKH 110
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 53.1 bits (126), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 86 LTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
LT+ +F++ + G V F+A WCG C+ +APV +E A + V++AK++ ++
Sbjct: 5 LTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAE--AHADKVTVAKLNVDENPE 62
Query: 145 ICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETL 178
F I S PTL+ + G+ + + G + E L
Sbjct: 63 TTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQL 96
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 213 SLTSENFNDVIK-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
+LT NF I+ G V + F+A WCG C+ +AP EE D + +AK++ +
Sbjct: 4 TLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDE- 59
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEEL 309
+ + +Q G+ P++ ++K G + G + E+L
Sbjct: 60 -NPETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQL 96
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGH-CQSLAPVWQELASHFKTEEDVSIAKIDC 139
++ LT++SF+ V + G V F+A WCG C+ +AP+ E+A ++ + +++AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGK--LTVAKLNI 61
Query: 140 TQHRSICQSFDIKSYPTLLWIESGK 164
Q+ + I+ PTLL ++G+
Sbjct: 62 DQNPGTAPKYGIRGIPTLLLFKNGE 86
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 10/104 (9%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGH-CKRLAPTWEELGTKLLDNKHG-IVIAKVDCT 269
LT ++F+ DV+K+ G + + F+A WCG CK +AP +E+ D G + +AK++
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIA----DEYQGKLTVAKLNID 62
Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
Q + + G+ G P++ ++KNG A G+ +L +F+
Sbjct: 63 Q--NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 104
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 219 FNDVI-KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLC 277
F+ +I ++ V + FFA WCG CKR+AP +EE +V KVD E+S ++
Sbjct: 19 FDSIISQNELVIVDFFAEWCGPCKRIAPFYEECS----KTYTKMVFIKVD-VDEVS-EVT 72
Query: 278 NQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+E + P+ VYKNG G+ D L Q I K+
Sbjct: 73 EKENITSMPTFKVYKNGSSVDTLLGAND-SALKQLIEKY 110
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160
V F+A WCG C+ +AP ++E + KT + K+D + + + +I S PT
Sbjct: 30 IVDFFAEWCGPCKRIAPFYEECS---KTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVY 86
Query: 161 ESGKKLDKFQGS 172
++G +D G+
Sbjct: 87 KNGSSVDTLLGA 98
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ LT++SF+ V + G V F+A WCG C+ +A + E+A ++ + +++AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
Q+ + I+ PTLL ++G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGE 85
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
LT ++F+ DV+K+ G + + F+A WCG CK +A +E+ D G + +AK++ Q
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P++ ++KNG A G+ +L +F+
Sbjct: 63 --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F A WCG C+ +AP + +LA K +V K+D + +S+ + I++ PT ++++
Sbjct: 43 VDFTASWCGPCRFIAPFFADLA---KKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLK 99
Query: 162 SGKKLDKFQGSR 173
GK LDK G++
Sbjct: 100 EGKILDKVVGAK 111
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 215 TSENFNDVIKSGT-----VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
T E +N+ ++ V + F A WCG C+ +AP + +L KL ++ KVD T
Sbjct: 23 TVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKL----PNVLFLKVD-T 77
Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
EL K + + + P+ K G + G++ +EL I KH
Sbjct: 78 DEL-KSVASDWAIQAMPTFMFLKEGKILDKVVGAKK-DELQSTIAKH 122
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 52.8 bits (125), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 86 LTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
LT+ +F++ + G+ V F+A WCG C+ +APV +E A + V++AK++ ++
Sbjct: 5 LTDANFQQAIQ-GDKPVLVDFWAAWCGPCRMMAPVLEEFAE--AHADKVTVAKLNVDENP 61
Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETL 178
F I S PTL+ + G+ + + G + E L
Sbjct: 62 ETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQL 96
Score = 47.8 bits (112), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 213 SLTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
+LT NF I+ V + F+A WCG C+ +AP EE D + +AK++ +
Sbjct: 4 TLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDE- 59
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEEL 309
+ + +Q G+ P++ ++K G + G + E+L
Sbjct: 60 -NPETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQL 96
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F+A WCG C+++AP+++EL+ + D K+D + + ++I + PT + I+
Sbjct: 38 VDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVDVDKLEETARKYNISAMPTFIAIK 93
Query: 162 SGKKLDKFQGS 172
+G+K+ G+
Sbjct: 94 NGEKVGDVVGA 104
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD 283
K+ V + FFA WCG CK +AP ++EL K+ + KVD + ++ + +
Sbjct: 32 KNKLVVVDFFATWCGPCKTIAPLFKELS-----EKYDAIFVKVDVDK--LEETARKYNIS 84
Query: 284 GFPSIYVYKNGVRTAEYNGS 303
P+ KNG + + G+
Sbjct: 85 AMPTFIAIKNGEKVGDVVGA 104
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ LT++SF+ V + G V F+A WC C+ +AP+ E+A ++ + +++AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
Q+ + I+ PTLL ++G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGE 85
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
LT ++F+ DV+K+ G + + F+A WC CK +AP +E+ D G + +AK++ Q
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P++ ++KNG A G+ +L +F+
Sbjct: 63 --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIK 152
KY+ V FYA WCG C+ +AP+ +EL+ + + + I K++ + + + F I+
Sbjct: 47 KYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGK--IYIYKVNVDKEPELARDFGIQ 104
Query: 153 SYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM 185
S PT+ ++ + G+ + E L Y+ K+
Sbjct: 105 SIPTIWFVPMKGEPQVNMGALSKEQLKGYIDKV 137
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
+ F+A WCG CK +AP EEL +K K I VD EL++D G+ P+
Sbjct: 54 AIVDFYADWCGPCKMVAPILEEL-SKEYAGKIYIYKVNVDKEPELARDF----GIQSIPT 108
Query: 288 IY 289
I+
Sbjct: 109 IW 110
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F+A WCG C+++AP+++EL+ + D K+D + + ++I + PT + I+
Sbjct: 29 VDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVDVDKLEETARKYNISAMPTFIAIK 84
Query: 162 SGKKLDKFQGS 172
+G+K+ G+
Sbjct: 85 NGEKVGDVVGA 95
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD 283
K+ V + FFA WCG CK +AP ++EL K+ + KVD + ++ + +
Sbjct: 23 KNKLVVVDFFATWCGPCKTIAPLFKELS-----EKYDAIFVKVDVDK--LEETARKYNIS 75
Query: 284 GFPSIYVYKNGVRTAEYNGS 303
P+ KNG + + G+
Sbjct: 76 AMPTFIAIKNGEKVGDVVGA 95
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 78 IVNEGLVELTEESFEKY--VSLGNHFV--KFYAPWCGHCQSLAPVWQELASHFKTEEDVS 133
+V G V++ S++++ V+ G+ V F+A WCG C+ + PV++++ S + V
Sbjct: 11 LVPRGSVQVIS-SYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKI-SDTPAGDKVG 68
Query: 134 IAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGS 172
K+D + I Q I++ PT ++ ++G+K+D G+
Sbjct: 69 FYKVDVDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGA 107
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 227 TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP 286
V I F+A WCG CK + P +E++ +K G VD ++++++ G+ P
Sbjct: 35 VVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEV----GIRAMP 90
Query: 287 SIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ +KNG + G+ D +L I +H
Sbjct: 91 TFVFFKNGQKIDTVVGA-DPSKLQAAITQH 119
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F+A WCG C+ +AP+ ++ A + D + K+D + + Q ++ S PTL++ +
Sbjct: 31 VDFFATWCGPCKMIAPMIEKFAEQY---SDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYK 87
Query: 162 SGKKLDKFQGS 172
GK++ + G+
Sbjct: 88 GGKEVTRVVGA 98
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 215 TSENFNDVIKSG--TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
++ ++ + SG V + FFA WCG CK +AP E+ + D K+D E+
Sbjct: 14 SASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAF----YKLD-VDEV 68
Query: 273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGS 303
S D+ + V P++ YK G G+
Sbjct: 69 S-DVAQKAEVSSMPTLIFYKGGKEVTRVVGA 98
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 51.6 bits (122), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 86 LTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
LT+ +F++ + G+ V F+A WCG C+ +APV +E A + V++AK++ ++
Sbjct: 5 LTDANFQQAIQ-GDKPVLVDFWAAWCGPCRMMAPVLEEFAE--AHADKVTVAKLNVDENP 61
Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETL 178
F I S PTL+ + G+ + + G + E L
Sbjct: 62 ETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQL 96
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 213 SLTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
+LT NF I+ V + F+A WCG C+ +AP EE D + +AK++ +
Sbjct: 4 TLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDE- 59
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEEL 309
+ + +Q G+ P++ ++K G + G + E+L
Sbjct: 60 -NPETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQL 96
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 214 LTSENFNDVIKSG---TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
+ + F ++K+ V + F WCG CK +AP +E+L + LD ++ K+DC Q
Sbjct: 23 VNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQ 78
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR 304
E +K L + G+ P+ + K E G++
Sbjct: 79 E-NKTLAKELGIRVVPTFKILKENSVVGEVTGAK 111
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 104 FYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-HRSICQSFDIKSYPTLLWIES 162
+ WCG C+++AP +++LA + DV K+DC Q ++++ + I+ PT ++
Sbjct: 44 MFTQWCGPCKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVVPTFKILKE 100
Query: 163 GKKLDKFQGSR 173
+ + G++
Sbjct: 101 NSVVGEVTGAK 111
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
+ F A WCG C+ +APV+ +LA F + K+D + + I + F +++ PT L+++
Sbjct: 39 IDFTASWCGPCRIMAPVFADLAKKFP---NAVFLKVDVDELKPIAEQFSVEAMPTFLFMK 95
Query: 162 SGKKLDKFQGS 172
G D+ G+
Sbjct: 96 EGDVKDRVVGA 106
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
V I F A WCG C+ +AP + +L K + V KVD + K + Q V+ P+
Sbjct: 37 VVIDFTASWCGPCRIMAPVFADLAKKFPNA----VFLKVDVDE--LKPIAEQFSVEAMPT 90
Query: 288 IYVYKNG 294
K G
Sbjct: 91 FLFMKEG 97
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 214 LTSENFNDVIKSG---TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
+ + F ++K+ V + F WCG CK +AP +E+L + LD ++ K+DC Q
Sbjct: 11 VNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQ 66
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR 304
E +K L + G+ P+ + K E G++
Sbjct: 67 E-NKTLAKELGIRVVPTFKILKENSVVGEVTGAK 99
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 104 FYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-HRSICQSFDIKSYPTLLWIES 162
+ WCG C+++AP +++LA + DV K+DC Q ++++ + I+ PT ++
Sbjct: 32 MFTQWCGPCKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVVPTFKILKE 88
Query: 163 GKKLDKFQGSR 173
+ + G++
Sbjct: 89 NSVVGEVTGAK 99
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ LT++SF+ + + G V F+A WCG C+ +AP+ E+A ++ + +++AK++
Sbjct: 4 IIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
Q+ + + PTLL ++G+
Sbjct: 62 QNPGTAPKYIERGIPTLLLFKNGE 85
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
LT ++F+ D++K+ G + + F+A WCG CK +AP +E+ D G + +AK++ Q
Sbjct: 7 LTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
E G P++ ++KNG A G+ +L +F+
Sbjct: 63 NPGTAPKYIE--RGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 63 NEQISETPKEPSDKPIVNEGLVELTEESFEKYVS-----------LGNH--FVKFYAPWC 109
N+ + T ++KP G + LT F K ++ LG+ V FYA WC
Sbjct: 6 NKSTTATDTVQAEKP--QSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWC 63
Query: 110 GHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKF 169
G C+ +AP+ +EL+ + + + I K++ + + + F I+ PT+ ++ +
Sbjct: 64 GPCKMVAPILEELSKEYAGK--IYIYKVNVDKEPELARDFGIQGIPTIWFVPMKGEPQVN 121
Query: 170 QGSRTLETLVNYVSKM 185
G+ + E L Y+ K+
Sbjct: 122 MGALSKEQLKGYIDKV 137
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
+ F+A WCG CK +AP EEL +K K I VD EL++D G+ G P+
Sbjct: 54 AIVDFYADWCGPCKMVAPILEEL-SKEYAGKIYIYKVNVDKEPELARDF----GIQGIPT 108
Query: 288 IY 289
I+
Sbjct: 109 IW 110
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F+A WCG C+ +AP+ ++ A + D + K+D + + Q ++ S PTL++ +
Sbjct: 24 VDFFATWCGPCKMIAPMIEKFAEQY---SDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYK 80
Query: 162 SGKKLDKFQGS 172
GK++ + G+
Sbjct: 81 GGKEVTRVVGA 91
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 215 TSENFNDVIKSGT--VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
++ ++ + SG V + FFA WCG CK +AP E+ + D K+D E+
Sbjct: 7 SASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSD----AAFYKLD-VDEV 61
Query: 273 SKDLCNQEGVDGFPSIYVYKNG 294
S D+ + V P++ YK G
Sbjct: 62 S-DVAQKAEVSSMPTLIFYKGG 82
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
++ LT++SF+ V + G V F+A WC + +AP+ E+A ++ + +++AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
Q+ + I+ PTLL ++G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGE 85
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
LT ++F+ DV+K+ G + + F+A WC K +AP +E+ D G + +AK++ Q
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P++ ++KNG A G+ +L +F+
Sbjct: 63 --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 104 FYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG 163
F++ HC L PV + LA+ + + +AK+DC + I F +++ PT+ ++G
Sbjct: 33 FWSERSQHCLQLTPVLESLAAQYHGQ--FILAKLDCDAEQXIAAQFGLRAIPTVYLFQNG 90
Query: 164 KKLDKFQGSRTLETLVNYVSKM 185
+ +D FQG + E + + K+
Sbjct: 91 QPVDGFQGPQPEEAIRALLDKV 112
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQELSKDLCNQEGVDGFP 286
V F++ HC +L P E L + HG ++AK+DC E + + Q G+ P
Sbjct: 29 VLFYFWSERSQHCLQLTPVLESLAAQY----HGQFILAKLDCDAE--QXIAAQFGLRAIP 82
Query: 287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
++Y+++NG + G + EE + +L + +EL
Sbjct: 83 TVYLFQNGQPVDGFQGPQP-EEAIRALLDKVLPREEEL 119
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 85 ELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
+L+E S + + L N F A WCG C+ +AP + EL+ ++ + + ID +
Sbjct: 38 KLSEASRDGKIVLAN----FSARWCGPCKQIAPYYIELSENYPS---LMFLVIDVDELSD 90
Query: 145 ICQSFDIKSYPTLLWIESGKKLDKFQGSRTLE 176
S++IK+ PT ++ G+++DK G+ E
Sbjct: 91 FSASWEIKATPTFFFLRDGQQVDKLVGANKPE 122
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
V F A WCG CK++AP + EL +N ++ +D ELS D + P+
Sbjct: 49 VLANFSARWCGPCKQIAPYYIELS----ENYPSLMFLVID-VDELS-DFSASWEIKATPT 102
Query: 288 IYVYKNGVRTAEYNGS 303
+ ++G + + G+
Sbjct: 103 FFFLRDGQQVDKLVGA 118
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 104 FYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG 163
F++ HC L P+ + LA+ + + +AK+DC + I F +++ PT+ ++G
Sbjct: 33 FWSERSQHCLQLTPILESLAAQYNGQ--FILAKLDCDAEQMIAAQFGLRAIPTVYLFQNG 90
Query: 164 KKLDKFQGSRTLETL 178
+ +D FQG + E +
Sbjct: 91 QPVDGFQGPQPEEAI 105
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Query: 218 NFNDVIKSGT---VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK 274
N V++ V F++ HC +L P E L + ++AK+DC E +
Sbjct: 16 NLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQY---NGQFILAKLDCDAE--Q 70
Query: 275 DLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
+ Q G+ P++Y+++NG + G + EE + +L + +EL
Sbjct: 71 MIAAQFGLRAIPTVYLFQNGQPVDGFQGPQP-EEAIRALLDXVLPREEEL 119
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F+A WCG + +AP+ ++ A + D + K+D + + Q ++ S PTL++ +
Sbjct: 32 VDFFATWCGPSKMIAPMIEKFAEQY---SDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYK 88
Query: 162 SGKKLDKFQGS 172
GK++ + G+
Sbjct: 89 GGKEVTRVVGA 99
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 215 TSENFNDVIKSG--TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
++ ++ + SG V + FFA WCG K +AP E+ + D K+D E+
Sbjct: 15 SASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAF----YKLDV-DEV 69
Query: 273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGS 303
S D+ + V P++ YK G G+
Sbjct: 70 S-DVAQKAEVSSMPTLIFYKGGKEVTRVVGA 99
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V FYA WCG C+ +AP+ ++ + + + K+D + + Q ++ + PTLL +
Sbjct: 29 VDFYATWCGPCKMIAPMIEKFSEQYPQAD---FYKLDVDELGDVAQKNEVSAMPTLLLFK 85
Query: 162 SGKKLDKFQGSR 173
+GK++ K G+
Sbjct: 86 NGKEVAKVVGAN 97
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 215 TSENFNDVI-KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS 273
T+ F+ I + V + F+A WCG CK +AP E+ + K+D EL
Sbjct: 13 TASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADF----YKLD-VDELG 67
Query: 274 KDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR 304
D+ + V P++ ++KNG A+ G+
Sbjct: 68 -DVAQKNEVSAMPTLLLFKNGKEVAKVVGAN 97
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 54/102 (52%), Gaps = 18/102 (17%)
Query: 79 VNEGLVELTEESFEKYV--SLGNHFVKFYAPWCGH--------------CQSLAPVWQEL 122
+++ ++ LT++SF+ V + G V F+A WCG C+ +AP+ E+
Sbjct: 1 MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEI 60
Query: 123 ASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGK 164
A ++ + +++AK++ Q+ + I+ PTLL ++G+
Sbjct: 61 ADEYQGK--LTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 100
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 23/117 (19%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGH--------------CKRLAPTWEELGTKLLDN 257
LT ++F+ DV+K+ G + + F+A WCG CK +AP +E+ D
Sbjct: 8 LTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIA----DE 63
Query: 258 KHG-IVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
G + +AK++ Q + + G+ G P++ ++KNG A G+ +L +F+
Sbjct: 64 YQGKLTVAKLNIDQ--NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 118
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
+ F A WCG + +APV+ +LA F + K+D + + I + F +++ PT L+++
Sbjct: 42 IDFTASWCGPSRIMAPVFADLAKKFP---NAVFLKVDVDELKPIAEQFSVEAMPTFLFMK 98
Query: 162 SGKKLDKFQGS 172
G D+ G+
Sbjct: 99 EGDVKDRVVGA 109
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
V I F A WCG + +AP + +L K + V KVD + K + Q V+ P+
Sbjct: 40 VVIDFTASWCGPSRIMAPVFADLAKKFPNA----VFLKVDVDE--LKPIAEQFSVEAMPT 93
Query: 288 IYVYKNG 294
K G
Sbjct: 94 FLFMKEG 100
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 214 LTSENFNDVIKSG---TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
+ + F ++K+ V + F WCG K +AP +E+L + LD ++ K+DC Q
Sbjct: 10 VNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD----VIFLKLDCNQ 65
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR 304
E +K L + G+ P+ + K E G++
Sbjct: 66 E-NKTLAKELGIRVVPTFKILKENSVVGEVTGAK 98
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 104 FYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-HRSICQSFDIKSYPTLLWIES 162
+ WCG +++AP +++LA + DV K+DC Q ++++ + I+ PT ++
Sbjct: 31 MFTQWCGPSKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVVPTFKILKE 87
Query: 163 GKKLDKFQGSR 173
+ + G++
Sbjct: 88 NSVVGEVTGAK 98
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 47.8 bits (112), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Query: 83 LVELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC 139
++ L ++F+ + L +H V F+A WC C LAP+ +ELA + V K++
Sbjct: 1 VIHLDSKNFDSF--LASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP---QVGFGKLNS 55
Query: 140 TQHRSICQSFDIKSYPTLLWIESGKKLDKFQGS 172
++ I + + S PT+++ + G+ +D+ G+
Sbjct: 56 DENPDIAARYGVMSLPTVIFFKDGEPVDEIIGA 88
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 214 LTSENFNDVIKSGTV-FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
L S+NF+ + S + + F+A WC C LAP EEL ++ + K++ +
Sbjct: 4 LDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELA----EDYPQVGFGKLNSDE-- 57
Query: 273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEEL 309
+ D+ + GV P++ +K+G E G+ EE+
Sbjct: 58 NPDIAARYGVMSLPTVIFFKDGEPVDEIIGAVPREEI 94
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V FYA WCG C+ +AP+ ++ + + + K+D + + Q ++ + PTLL +
Sbjct: 23 VDFYATWCGPCKMIAPMIEKFSEQYPQAD---FYKLDVDELGDVAQKNEVSAMPTLLLFK 79
Query: 162 SGKKLDKFQGS 172
+GK++ K G+
Sbjct: 80 NGKEVAKVVGA 90
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 215 TSENFNDVI-KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS 273
T+ F+ I + V + F+A WCG CK +AP E+ + K+D EL
Sbjct: 7 TASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD----FYKLD-VDELG 61
Query: 274 KDLCNQEGVDGFPSIYVYKNGVRTAEYNGS 303
D+ + V P++ ++KNG A+ G+
Sbjct: 62 -DVAQKNEVSAMPTLLLFKNGKEVAKVVGA 90
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 98 GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTL 157
G V F+A WCG CQ L + +A + +DV+ K+D ++ + ++ + S P L
Sbjct: 24 GLVLVDFFATWCGPCQRLGQILPSIA---EANKDVTFIKVDVDKNGNAADAYGVSSIPAL 80
Query: 158 LWIESG----KKLDKFQGS 172
+++ K LD+F G+
Sbjct: 81 FFVKKEGNEIKTLDQFVGA 99
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGF 285
G V + FFA WCG C+RL ++ + + + KVD + + + + GV
Sbjct: 24 GLVLVDFFATWCGPCQRLG----QILPSIAEANKDVTFIKVDVDK--NGNAADAYGVSSI 77
Query: 286 PSIYVYK---NGVRTAEYNGSRDLEELYQFILKHK 317
P+++ K N ++T + D+ + I K K
Sbjct: 78 PALFFVKKEGNEIKTLDQFVGADVSRIKADIEKFK 112
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F+A WCG + +AP+ ++ A + D + K+D + + Q ++ S PTL++ +
Sbjct: 24 VDFFATWCGPSKMIAPMIEKFAEQY---SDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYK 80
Query: 162 SGKKLDKFQGS 172
GK++ + G+
Sbjct: 81 GGKEVTRVVGA 91
Score = 37.0 bits (84), Expect = 0.015, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 215 TSENFNDVIKSGT--VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
++ ++ + SG V + FFA WCG K +AP E+ + D K+D E+
Sbjct: 7 SASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSD----AAFYKLD-VDEV 61
Query: 273 SKDLCNQEGVDGFPSIYVYKNG 294
S D+ + V P++ YK G
Sbjct: 62 S-DVAQKAEVSSMPTLIFYKGG 82
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 83 LVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
L +T++SFE+ V + V F+A WCG C+ +AP + +A+ + + + I K++
Sbjct: 7 LKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG--DKIEIVKLNID 64
Query: 141 QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLV 179
++ + + S PTL + G+ G++ +V
Sbjct: 65 ENPGTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIV 103
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 214 LTSENF-NDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
+T ++F DV+K+ V + F+A WCG C+++AP+ E + + D I I K++ +
Sbjct: 10 VTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK---IEIVKLNIDE- 65
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGS-------RDLEEL 309
+ + GV P++ VY+ G G+ RDLE+
Sbjct: 66 -NPGTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDF 109
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 85 ELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
+L+E S + + L N F A WCG + +AP + EL+ ++ + + ID +
Sbjct: 38 KLSEASRDGKIVLAN----FSARWCGPSRQIAPYYIELSENYPS---LMFLVIDVDELSD 90
Query: 145 ICQSFDIKSYPTLLWIESGKKLDKFQGSRTLE 176
S++IK+ PT ++ G+++DK G+ E
Sbjct: 91 FSASWEIKATPTFFFLRDGQQVDKLVGANKPE 122
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F+APW C + V ELA K VS K++ + + ++I S PT L+ +
Sbjct: 37 VHFWAPWAPQCAQMNEVMAELA---KELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFK 93
Query: 162 SGKKLDKFQGSRTLE 176
+ +K+D+ G+ E
Sbjct: 94 NSQKIDRLDGAHAPE 108
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F+APW C + V ELA K VS K++ + + ++I S PT L+ +
Sbjct: 43 VHFWAPWAPQCAQMNEVMAELA---KELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFK 99
Query: 162 SGKKLDKFQGSRTLE 176
+ +K+D+ G+ E
Sbjct: 100 NSQKIDRLDGAHAPE 114
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
V + F A WCG CK + P + L K ++ +VD ++D+ + G+ G P+
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY----SNVIFLEVDVDD--AQDVAPKYGIRGIPT 76
Query: 288 IYVYKNGVRTAEYNGSRDLEELYQFI 313
+ ++KNG A G+ +L +F+
Sbjct: 77 LLLFKNGEVAATKVGALSKGQLKEFL 102
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F A WCG C+ + P + L+ + +V ++D + + + I+ PTLL +
Sbjct: 25 VDFSATWCGPCKMIKPFFHSLSEKY---SNVIFLEVDVDDAQDVAPKYGIRGIPTLLLFK 81
Query: 162 SGK 164
+G+
Sbjct: 82 NGE 84
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V FYA WCG + +AP+ ++ + + + K+D + + Q ++ + PTLL +
Sbjct: 29 VDFYATWCGPSKMIAPMIEKFSEQYPQAD---FYKLDVDELGDVAQKNEVSAMPTLLLFK 85
Query: 162 SGKKLDKFQGSR 173
+GK++ K G+
Sbjct: 86 NGKEVAKVVGAN 97
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 215 TSENFNDVI-KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS 273
T+ F+ I + V + F+A WCG K +AP E+ + K+D EL
Sbjct: 13 TASEFDSAIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQADF----YKLDV-DELG 67
Query: 274 KDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR 304
D+ + V P++ ++KNG A+ G+
Sbjct: 68 -DVAQKNEVSAMPTLLLFKNGKEVAKVVGAN 97
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F A WCG C+ + P + L+ + +V ++D + + ++KS PT + +
Sbjct: 25 VDFSATWCGPCKMIKPFFHSLSEKY---SNVIFLEVDVDDCQDVASESEVKSMPTFQFFK 81
Query: 162 SGKKLDKFQGS--RTLETLVN 180
G+K+ +F G+ LE +N
Sbjct: 82 KGQKVGEFSGANKEKLEATIN 102
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
V + F A WCG CK + P + L K ++ +VD +D+ ++ V P+
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY----SNVIFLEVDVDD--CQDVASESEVKSMPT 76
Query: 288 IYVYKNGVRTAEYNGS 303
+K G + E++G+
Sbjct: 77 FQFFKKGQKVGEFSGA 92
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F A WCG C+ + P + L+ + +V ++D + + ++K+ PT + +
Sbjct: 25 VDFSATWCGPCKMIKPFFHSLSEKY---SNVIFLEVDVDDAQDVASEAEVKATPTFQFFK 81
Query: 162 SGKKLDKFQGS--RTLETLVN 180
G+K+ +F G+ LE +N
Sbjct: 82 KGQKVGEFSGANKEKLEATIN 102
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
V + F A WCG CK + P + L K ++ +VD ++D+ ++ V P+
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY----SNVIFLEVDVDD--AQDVASEAEVKATPT 76
Query: 288 IYVYKNGVRTAEYNGS 303
+K G + E++G+
Sbjct: 77 FQFFKKGQKVGEFSGA 92
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 8 SRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKG 41
S V +VD + + ++ E+ PT +FFKKG
Sbjct: 50 SNVIFLEVDVDDAQDVASEAEVKATPTFQFFKKG 83
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 79 VNEGLVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAK 136
+++G++ +T+ FE V V F+A WCG CQ ++P+ A+ + + + + K
Sbjct: 5 MSKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTY--SDRLKVVK 62
Query: 137 IDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV 182
++ + + + + ++ P L ++ + LD +G + + L++++
Sbjct: 63 LEIDPNPTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFL 108
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
V + F+A WCG C+ ++P L ++ +V ++D K + V+G P+
Sbjct: 28 VLVYFWASWCGPCQLMSPLI-NLAANTYSDRLKVVKLEIDPNPTTVK----KYKVEGVPA 82
Query: 288 IYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ + K G ++L F+ H
Sbjct: 83 LRLVKGEQILDSTEGVISKDKLLSFLDTH 111
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F A WCG C+ + P + L+ + + + DC S C+ +KS PT + +
Sbjct: 25 VDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECE---VKSMPTFQFFK 81
Query: 162 SGKKLDKFQGS--RTLETLVN 180
G+K+ +F G+ LE +N
Sbjct: 82 KGQKVGEFSGANKEKLEATIN 102
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
V + F A WCG CK + P + L K ++ +VD +D+ ++ V P+
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY----SNVIFLEVDVDD--CQDVASECEVKSMPT 76
Query: 288 IYVYKNGVRTAEYNGS 303
+K G + E++G+
Sbjct: 77 FQFFKKGQKVGEFSGA 92
>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like
Hypothetical Protein Q4dv70
Length = 127
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 78 IVNEG-----LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELA---SHFK 127
+ N+G +VELT+E+F+ V + FV +Y PW H + +W +L+ S +
Sbjct: 7 VANDGERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKR 66
Query: 128 TEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQ--GSRTLETLVNYV 182
A+ID ++ + + + +PT+ + K + F+ G R L + ++V
Sbjct: 67 NHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFV 123
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
Query: 214 LTSENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
LT E F+ ++ VF+ ++ PW H W++L ++ + E
Sbjct: 20 LTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGE 79
Query: 272 LSKDLCNQEGVDGFPSIYVYK--NGVRTAEYNGSRDLEELYQFILKH 316
D+ + V GFP++ Y + EY+G R L + F+ ++
Sbjct: 80 KYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN 126
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 86 LTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
LTEE+F++ + V +A WC C P+++++A +K + +++ +++
Sbjct: 9 LTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK--AVFGRLNVDENQK 66
Query: 145 ICQSFDIKSYPTLLWIESGKKLDKFQGS---RTLETLVN 180
I + + + PT L +G+ +D G+ TLE+ VN
Sbjct: 67 IADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVN 105
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
+ + F A WCG CK +AP +E L N + + + + + G+ P+
Sbjct: 27 IVVAFTATWCGPCKMIAPLFET-----LSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPT 81
Query: 288 IYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+VYK+GV+ + G+ ++L + KH
Sbjct: 82 FHVYKDGVKADDLVGASQ-DKLKALVAKH 109
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F A WCG C+ +AP+++ L++ + + V K+D ++ ++ I + PT +
Sbjct: 29 VAFTATWCGPCKMIAPLFETLSNDYAGK--VIFLKVDVDAVAAVAEAAGITAMPTFHVYK 86
Query: 162 SGKKLDKFQGS 172
G K D G+
Sbjct: 87 DGVKADDLVGA 97
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F A WCG C+ + P + L+ + +V ++D + + ++K PT + +
Sbjct: 25 VDFSATWCGPCKMIKPFFHSLSEKY---SNVIFLEVDVDDCQDVASEXEVKCMPTFQFFK 81
Query: 162 SGKKLDKFQGS--RTLETLVN 180
G+K+ +F G+ LE +N
Sbjct: 82 KGQKVGEFSGANKEKLEATIN 102
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
V + F A WCG CK + P + L K ++ +VD +D+ ++ V P+
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY----SNVIFLEVDVDD--CQDVASEXEVKCMPT 76
Query: 288 IYVYKNGVRTAEYNGS 303
+K G + E++G+
Sbjct: 77 FQFFKKGQKVGEFSGA 92
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F A WCG C+ + P + L+ + +V ++D + + ++K PT + +
Sbjct: 25 VDFSATWCGPCKMIKPFFHSLSEKY---SNVIFLEVDVNDCQDVASECEVKCMPTFQFFK 81
Query: 162 SGKKLDKFQGS--RTLETLVN 180
G+K+ +F G+ LE +N
Sbjct: 82 KGQKVGEFSGANKEKLEATIN 102
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
V + F A WCG CK + P + L K ++ +VD +D+ ++ V P+
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY----SNVIFLEVDVND--CQDVASECEVKCMPT 76
Query: 288 IYVYKNGVRTAEYNGSR 304
+K G + E++G+
Sbjct: 77 FQFFKKGQKVGEFSGAN 93
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
+ + F A WCG CK +AP +E L N + + + + + G+ P+
Sbjct: 27 IVVDFTATWCGPCKMIAPLFET-----LSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPT 81
Query: 288 IYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+VYK+GV+ + G+ ++L + KH
Sbjct: 82 FHVYKDGVKADDLVGASQ-DKLKALVAKH 109
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F A WCG C+ +AP+++ L++ + + V K+D ++ ++ I + PT +
Sbjct: 29 VDFTATWCGPCKMIAPLFETLSNDYAGK--VIFLKVDVDAVAAVAEAAGITAMPTFHVYK 86
Query: 162 SGKKLDKFQGS 172
G K D G+
Sbjct: 87 DGVKADDLVGA 97
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F A WCG + + P + L+ + +V ++D + + ++KS PT + +
Sbjct: 25 VDFSATWCGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDSQDVASESEVKSMPTFQFFK 81
Query: 162 SGKKLDKFQGS--RTLETLVN 180
G+K+ +F G+ LE +N
Sbjct: 82 KGQKVGEFSGANKEKLEATIN 102
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
V + F A WCG K + P + L K ++ +VD S+D+ ++ V P+
Sbjct: 23 VVVDFSATWCGPSKMIKPFFHSLSEKY----SNVIFLEVDVDD--SQDVASESEVKSMPT 76
Query: 288 IYVYKNGVRTAEYNGS 303
+K G + E++G+
Sbjct: 77 FQFFKKGQKVGEFSGA 92
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 8 SRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKG 41
S V +VD + + ++ E+ PT +FFKKG
Sbjct: 50 SNVIFLEVDVDDSQDVASESEVKSMPTFQFFKKG 83
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F A WCG C+ + P + L+ + + + DC S C+ +K PT + +
Sbjct: 25 VDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECE---VKCMPTFQFFK 81
Query: 162 SGKKLDKFQGS--RTLETLVN 180
G+K+ +F G+ LE +N
Sbjct: 82 KGQKVGEFSGANKEKLEATIN 102
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
V + F A WCG CK + P + L K ++ +VD +D+ ++ V P+
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY----SNVIFLEVDVDD--CQDVASECEVKCMPT 76
Query: 288 IYVYKNGVRTAEYNGSR 304
+K G + E++G+
Sbjct: 77 FQFFKKGQKVGEFSGAN 93
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F A WCG C+ + P + L+ + + + DC S C+ +K PT + +
Sbjct: 25 VDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECE---VKCTPTFQFFK 81
Query: 162 SGKKLDKFQGS--RTLETLVN 180
G+K+ +F G+ LE +N
Sbjct: 82 KGQKVGEFSGANKEKLEATIN 102
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
V + F A WCG CK + P + L K ++ +VD +D+ ++ V P+
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY----SNVIFLEVDVDD--CQDVASECEVKCTPT 76
Query: 288 IYVYKNGVRTAEYNGSR 304
+K G + E++G+
Sbjct: 77 FQFFKKGQKVGEFSGAN 93
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F A WCG + + P + L+ + +V ++D + + ++K+ PT + +
Sbjct: 25 VDFSATWCGPAKMIKPFFHSLSEKYS---NVIFLEVDVDDAQDVASEAEVKATPTFQFFK 81
Query: 162 SGKKLDKFQGS--RTLETLVN 180
G+K+ +F G+ LE +N
Sbjct: 82 KGQKVGEFSGANKEKLEATIN 102
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
V + F A WCG K + P + L K ++ +VD ++D+ ++ V P+
Sbjct: 23 VVVDFSATWCGPAKMIKPFFHSLSEKY----SNVIFLEVDVDD--AQDVASEAEVKATPT 76
Query: 288 IYVYKNGVRTAEYNGS 303
+K G + E++G+
Sbjct: 77 FQFFKKGQKVGEFSGA 92
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 8 SRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKG 41
S V +VD + + ++ E+ PT +FFKKG
Sbjct: 50 SNVIFLEVDVDDAQDVASEAEVKATPTFQFFKKG 83
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F A WCG + + P + L+ + + + DC S C+ +KS PT + +
Sbjct: 36 VDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECE---VKSMPTFQFFK 92
Query: 162 SGKKLDKFQGS--RTLETLVN 180
G+K+ +F G+ LE +N
Sbjct: 93 KGQKVGEFSGANKEKLEATIN 113
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
V + F A WCG K + P + L K ++ +VD +D+ ++ V P+
Sbjct: 34 VVVDFSATWCGPSKMIKPFFHSLSEKY----SNVIFLEVDVDD--CQDVASECEVKSMPT 87
Query: 288 IYVYKNGVRTAEYNGS 303
+K G + E++G+
Sbjct: 88 FQFFKKGQKVGEFSGA 103
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 83 LVELTEESFEKYVSLGNHFV-KFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
L LTE F + + V FYA WCG C+ + P +L + DV K D +
Sbjct: 17 LTNLTE--FRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAY---PDVRFVKCDVDE 71
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGS 172
I + ++ + PT + + G+ + K G+
Sbjct: 72 SPDIAKECEVTAMPTFVLGKDGQLIGKIIGA 102
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 219 FNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLC 277
F ++IK + I F+A WCG CK + P +L D + V C + S D+
Sbjct: 23 FRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRF------VKCDVDESPDIA 76
Query: 278 NQEGVDGFPSIYVYKNGVRTAEYNGS 303
+ V P+ + K+G + G+
Sbjct: 77 KECEVTAMPTFVLGKDGQLIGKIIGA 102
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDI------KSYP 155
V+F+A W CQS AP++ +L+ + ++ K+D ++ + + + K P
Sbjct: 31 VEFFANWSNDCQSFAPIYADLSLKYNC-TGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLP 89
Query: 156 TLLWIESGKK 165
TL+ + GK+
Sbjct: 90 TLILFQGGKE 99
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
K T ++FFA W C+ AP + +L K N G+ KVD +
Sbjct: 25 KRVTWIVEFFANWSNDCQSFAPIYADLSLKY--NCTGLNFGKVDVGR 69
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160
V F C CQ + PV +EL ++ EE +D + +++ Q F +K P +L+
Sbjct: 26 LVXFSRKNCHVCQKVTPVLEELRLNY--EESFGFYYVDVEEEKTLFQRFSLKGVPQILYF 83
Query: 161 ESGKKLDKFQG 171
+ G+ K G
Sbjct: 84 KDGEYKGKXAG 94
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI 288
+ F C C+++ P EEL L+ + VD +E K L + + G P I
Sbjct: 26 LVXFSRKNCHVCQKVTPVLEELR---LNYEESFGFYYVDVEEE--KTLFQRFSLKGVPQI 80
Query: 289 YVYKNGVRTAEYNGSRDLEELYQFI 313
+K+G + G + +E+ Q I
Sbjct: 81 LYFKDGEYKGKXAGDVEDDEVEQXI 105
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F A WCG + + P + L+ + + + DC S C+ +K PT + +
Sbjct: 25 VDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECE---VKRMPTFQFFK 81
Query: 162 SGKKLDKFQGS--RTLETLVN 180
G+K+ +F G+ LE +N
Sbjct: 82 KGQKVGEFSGANKEKLEATIN 102
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
V + F A WCG K + P + L K ++ +VD +D+ ++ V P+
Sbjct: 23 VVVDFSATWCGPSKMIKPFFHSLSEKY----SNVIFLEVDVDD--CQDVASECEVKRMPT 76
Query: 288 IYVYKNGVRTAEYNGS 303
+K G + E++G+
Sbjct: 77 FQFFKKGQKVGEFSGA 92
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 104 FYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG 163
F+A WC C + +L ++ + + + K+D ++ S+ + F +KS PT++ +++
Sbjct: 49 FFAKWCQACTMQSTEMDKLQKYY--GKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNK 106
Query: 164 KKL---DKFQGSRTLETLV 179
L D F S L L+
Sbjct: 107 TMLARKDHFVSSNDLIALI 125
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 223 IKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG--IVIAKVDCTQELSKDLCNQE 280
+K+ + + FFA WC C T + L +G I + KVD + S L +
Sbjct: 40 MKNTVIVLYFFAKWCQAC-----TMQSTEMDKLQKYYGKRIYLLKVDLDKNES--LARKF 92
Query: 281 GVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
V P+I + KN A + +L I KH
Sbjct: 93 SVKSLPTIILLKNKTMLARKDHFVSSNDLIALIKKH 128
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
+ F WC C+ + P ++E+AS + E D+ A +D +I++ P+L
Sbjct: 22 IMFTGSWCQPCKKMKPTFEEMAS--QMEGDIRFAYMDAEDAEKTMAELNIRTLPSLALFV 79
Query: 162 SGKKLDKFQGS 172
G + F G+
Sbjct: 80 DGMIREVFSGT 90
Score = 35.4 bits (80), Expect = 0.044, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
+ I F WC CK++ PT+EE+ +++ + I A +D E ++ + + PS
Sbjct: 20 IIIMFTGSWCQPCKKMKPTFEEMASQM---EGDIRFAYMDA--EDAEKTMAELNIRTLPS 74
Query: 288 IYVYKNGVRTAEYNGSRDLEELYQFI 313
+ ++ +G+ ++G+ + +L +I
Sbjct: 75 LALFVDGMIREVFSGTMNKSDLRYWI 100
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 87 TEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSIC 146
TE + L + V F+ C HC+++ V + + V+I+ +D +
Sbjct: 9 TEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGAR---APQVAISSVDSEARPELM 65
Query: 147 QSFDIKSYPTLLWIESGKKLDKFQG---SRTLETL 178
+ + PTL++I GK F G R L+ L
Sbjct: 66 KELGFERVPTLVFIRDGKVAKVFSGIMNPRELQAL 100
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 104 FYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG 163
F A WCG C+++ +++A F T V AK+D + I + PT + SG
Sbjct: 44 FTAVWCGPCKTIERPMEKIAYEFPT---VKFAKVDADNNSEIVSKCRVLQLPTFIIARSG 100
Query: 164 KKLDKFQGS 172
K L G+
Sbjct: 101 KMLGHVIGA 109
>pdb|3QCP|A Chain A, Qsox From Trypanosoma Brucei
Length = 470
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 214 LTSENFNDVIKSGTV---FIKFFAPWCGHCKRLAPTWEEL--GTKLLDNKHGIVI---AK 265
L+ ++F+ V + + + F+ CG C+R A T+ + G K+ K + I A
Sbjct: 28 LSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAA 87
Query: 266 VDCTQELSKDLCNQEGVDGFPSIYVY--KNGVRTAEYNGSRDLEEL 309
V+C E+ DLC + ++ P ++ + ++ R+ E G+ LE +
Sbjct: 88 VNCASEV--DLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHV 131
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 79 VNEGLVELTEESF---EKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEED---- 131
++ +V+L+ + F + L V FY CG C+ A + + A K E
Sbjct: 21 LDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDAL 80
Query: 132 --VSIAKIDCTQHRSICQSFDIKSYPTLLWI 160
+ A ++C +C+ +DI P L +
Sbjct: 81 QIATAAAVNCASEVDLCRKYDINFVPRLFFF 111
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F A WCG C+ + P + L+ + +V ++D + + ++K PT + +
Sbjct: 25 VDFSATWCGPCKMIKPFFHSLSEKY---SNVIFLEVDVDDXQDVASEXEVKCMPTFQFFK 81
Query: 162 SGKKLDKFQGS--RTLETLVN 180
G+K+ +F G+ LE +N
Sbjct: 82 KGQKVGEFSGANKEKLEATIN 102
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
V + F A WCG CK + P + L K + + ++ + +D+ ++ V P+
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSN------VIFLEVDVDDXQDVASEXEVKCMPT 76
Query: 288 IYVYKNGVRTAEYNGS 303
+K G + E++G+
Sbjct: 77 FQFFKKGQKVGEFSGA 92
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F A W G + + P + L+ + + + DC S C+ +K PT + +
Sbjct: 25 VDFSATWSGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECE---VKCMPTFQFFK 81
Query: 162 SGKKLDKFQGS--RTLETLVN 180
G+K+ +F G+ LE +N
Sbjct: 82 KGQKVGEFSGANKEKLEATIN 102
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 24/109 (22%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH------------------ 142
F+ F+ WC HC+ P HFK+ + V I ++ +
Sbjct: 30 FLNFWGTWCPHCKKEFPYMANQYKHFKS-QGVEIVAVNVGESKIAVHNFMKSYGVNFPVV 88
Query: 143 ----RSICQSFDIKSYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKMK 186
R + ++D+ PT I GK + G+ T + +Y++ +K
Sbjct: 89 LDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIK 137
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 223 IKSGTVFIKFFAPWCGHCKRLAP 245
+K VF+ F+ WC HCK+ P
Sbjct: 24 LKGKGVFLNFWGTWCPHCKKEFP 46
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 24/109 (22%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH------------------ 142
F+ F+ WC HC+ P HFK+ + V I ++ +
Sbjct: 27 FLNFWGTWCEHCKKEFPYMANQYKHFKS-QGVEIVAVNVGESKIAVHNFMKSYGVNFPVV 85
Query: 143 ----RSICQSFDIKSYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKMK 186
R + ++D+ PT I GK + G+ T + +Y++ +K
Sbjct: 86 LDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIK 134
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 223 IKSGTVFIKFFAPWCGHCKRLAP 245
+K VF+ F+ WC HCK+ P
Sbjct: 21 LKGKGVFLNFWGTWCEHCKKEFP 43
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 33.9 bits (76), Expect = 0.14, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
VKF CG C +AP + +++ + ++D Q + + +I + PT +
Sbjct: 26 VKFTMRGCGPCLRIAPAFSSMSNKYP---QAVFLEVDVHQCQGTAATNNISATPTFQFFR 82
Query: 162 SGKKLDKFQGS 172
+ ++D++QG+
Sbjct: 83 NKVRIDQYQGA 93
Score = 32.0 bits (71), Expect = 0.53, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Query: 230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIY 289
+KF CG C R+AP + + K V +VD Q N + P+
Sbjct: 26 VKFTMRGCGPCLRIAPAFSSMSNKYPQ----AVFLEVDVHQCQGTAATNN--ISATPTFQ 79
Query: 290 VYKNGVRTAEYNGSRDLEELYQFILKHKVESHDE 323
++N VR +Y G+ + L+ K++ H E
Sbjct: 80 FFRNKVRIDQYQGADAVG------LEEKIKQHLE 107
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 20/102 (19%)
Query: 104 FYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID--------------------CTQHR 143
F+APWC CQ APV ++A+ V +A +D
Sbjct: 46 FWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDG 105
Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM 185
S+ +F + P +++ +D +G + + L V+ +
Sbjct: 106 SVWANFGVTQQPAYAFVDPHGNVDVVRGRMSQDELTRRVTAL 147
>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase From
Bacteroides Thetaiotaomicron
Length = 130
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 223 IKSGTVFIKFFAPWCGHCKRLAP-TWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEG 281
++ +F+ F WCG CKRL+ +++ N+H V K+D + +L + G
Sbjct: 25 VEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRH-FVNLKMDMEKGEGVELRKKYG 83
Query: 282 VDGFPS-IYVYKNGVRTAEYNGSRDLEELYQFILKHKVES 320
V +P+ +++ +G G+ D EL + + K VES
Sbjct: 84 VHAYPTLLFINSSGEVVYRLVGAEDAPELLKKV-KLGVES 122
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 101 FVKFYAPWCGHCQSLAPVW--QELASHFKTEEDVSIAKIDCTQHRSI--CQSFDIKSYPT 156
FV + WCG C+ L+ V L + + V++ K+D + + + + + +YPT
Sbjct: 31 FVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNL-KMDMEKGEGVELRKKYGVHAYPT 89
Query: 157 LLWIES 162
LL+I S
Sbjct: 90 LLFINS 95
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 20/102 (19%)
Query: 104 FYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID--------------------CTQHR 143
F+APWC CQ APV ++A+ V +A +D
Sbjct: 32 FWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDG 91
Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM 185
S+ +F + P +++ +D +G + + L V+ +
Sbjct: 92 SVWANFGVTQQPAYAFVDPHGNVDVVRGRMSQDELTRRVTAL 133
>pdb|3QD9|A Chain A, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|B Chain B, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|C Chain C, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|D Chain D, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
Length = 470
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Query: 79 VNEGLVELTEESF---EKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEED---- 131
++ +V+L+ + F + L V FY CG + A + + A K E
Sbjct: 21 LDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGASRRYASTFSKFAGGLKVEHGKDAL 80
Query: 132 --VSIAKIDCTQHRSICQSFDIKSYPTLLWI 160
+ A ++C +C+ +DI P L +
Sbjct: 81 QIATAAAVNCASEVDLCRKYDINFVPRLFFF 111
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 24/109 (22%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH------------------ 142
F+ F+ WC C+ P HFK+ + V I ++ +
Sbjct: 30 FLNFWGTWCEPCKKQFPYMANQYKHFKS-QGVEIVAVNVGESKIAVHNFMKSYGVNFPVV 88
Query: 143 ----RSICQSFDIKSYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKMK 186
R + ++D+ PT I GK + G+ T + +Y++ +K
Sbjct: 89 LDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIK 137
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 24/109 (22%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH------------------ 142
F+ F+ WC C+ P HFK+ + V I ++ +
Sbjct: 30 FLNFWGTWCEPCKKEFPYMANQYKHFKS-QGVEIVAVNVGESKIAVHNFMKSYGVNFPVV 88
Query: 143 ----RSICQSFDIKSYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKMK 186
R + ++D+ PT I GK + G+ T + +Y++ +K
Sbjct: 89 LDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIK 137
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/65 (20%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V FY+P C +C++ P ++E A + + +I+ + + + ++ PT +
Sbjct: 29 VXFYSPACPYCKAXEPYFEEYAKEYGS--SAVFGRINIATNPWTAEKYGVQGTPTFKFFC 86
Query: 162 SGKKL 166
G+ +
Sbjct: 87 HGRPV 91
>pdb|3KP8|A Chain A, The Thioredoxin-Like Domain Of A Vkor Homolog From
Synechococcus Sp
Length = 106
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 19/79 (24%)
Query: 106 APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC------TQHRSICQSFDIKSYPTLLW 159
A WC HCQ +EL F D + ++C T C I SYPT W
Sbjct: 21 AYWCPHCQD----QKEL---FGAAFD-QVPYVECSPNGPGTPQAQECTEAGITSYPT--W 70
Query: 160 IESGKKLDKFQGSRTLETL 178
I +G+ + G R+LE L
Sbjct: 71 IINGR---TYTGVRSLEAL 86
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 77 PIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAK 136
P +N V L + KY+ ++ +A WCG C+ P +EL + +D+
Sbjct: 16 PDINGKTVSLADLK-GKYI-----YIDVWATWCGPCRGELPALKELEEKY-AGKDIHFVS 68
Query: 137 IDCTQHR 143
+ C +++
Sbjct: 69 LSCDKNK 75
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 223 IKSGTVFIKFFAPWCGHCKRLAPTWEEL 250
+K ++I +A WCG C+ P +EL
Sbjct: 28 LKGKYIYIDVWATWCGPCRGELPALKEL 55
>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major
Length = 165
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 221 DVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKH-GIVIAKVD 267
D + TVF F A WC C+ P E K D+K+ I++A D
Sbjct: 44 DSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWD 91
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD 283
++ ++ IKF A WC C ++ E +L N + + + +D ++ L +Q +
Sbjct: 39 QNSSIVIKFGAVWCKPCNKIK---EYFKNQL--NYYYVTLVDIDV--DIHPKLNDQHNIK 91
Query: 284 GFPSIYVYKN------GVRTAEYNGSRDLEELYQ 311
P+ Y N V T E D+E+ +Q
Sbjct: 92 ALPTFEFYFNLNNEWVLVHTVEGANQNDIEKAFQ 125
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTL 157
+KF A WC C + ++ +++ V++ ID H + +IK+ PT
Sbjct: 45 IKFGAVWCKPCNKIKEYFKNQLNYYY----VTLVDIDVDIHPKLNDQHNIKALPTF 96
>pdb|2FM9|A Chain A, Structure Of Salmonella Sipa Residues 48-264
Length = 215
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 15/99 (15%)
Query: 176 ETLVNYVSKMKGPLNKKADSPDAENASXXXXXXXXXXSLTSENFNDVIKSGTVFIKFFAP 235
+ ++ + + LN +DSP+A+ + +E +IK G F P
Sbjct: 42 KAIMEFAGLFRSALNATSDSPEAKT---------LLMKVGAEYTAQIIKDGLKEKSAFGP 92
Query: 236 WCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK 274
W K+ E L +LLD I K + ELSK
Sbjct: 93 WLPETKKAEAKLENLEKQLLD------IIKNNTGGELSK 125
>pdb|2COS|A Chain A, Solution Structure Of Rsgi Ruh-038, A Uba Domain From
Mouse Lats2 (Large Tumor Suppressor Homolog 2)
Length = 54
Score = 28.9 bits (63), Expect = 3.6, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 162 SGKKLDKFQGSRTLETLVNYVSKMKGP 188
+G+ L K GSR++E + Y+SKM GP
Sbjct: 26 AGRAL-KQTGSRSIEAALEYISKMSGP 51
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 22/113 (19%)
Query: 224 KSGTV-FIKFFAPWCGHCKRLAPTWEELGTKL-----------LDNKHGIV---IAKVDC 268
K+G+V ++ F+A WCG C++ P + K LD K G +A+V
Sbjct: 26 KTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAVNLDAKTGDAXKFLAQVPA 85
Query: 269 TQELSKDLCNQE----GVDGFP-SIYVYKNGVRTAEYNGSR--DLEELYQFIL 314
++ D Q GV G P S + +NG ++ G R D E L Q IL
Sbjct: 86 EFTVAFDPKGQTPRLYGVKGXPTSFLIDRNGKVLLQHVGFRPADKEALEQQIL 138
>pdb|2FM8|C Chain C, Crystal Structure Of The Salmonella Secretion Chaperone
Invb In Complex With Sipa
Length = 240
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 15/99 (15%)
Query: 176 ETLVNYVSKMKGPLNKKADSPDAENASXXXXXXXXXXSLTSENFNDVIKSGTVFIKFFAP 235
+ ++ + + LN +DSP+A+ + +E +IK G F P
Sbjct: 68 KAIMEFAGLFRSALNATSDSPEAKT---------LLMKVGAEYTAQIIKDGLKEKSAFGP 118
Query: 236 WCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK 274
W K+ E L +LLD I K + ELSK
Sbjct: 119 WLPETKKAEAKLENLEKQLLD------IIKNNTGGELSK 151
>pdb|3EMX|A Chain A, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
pdb|3EMX|B Chain B, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
Length = 135
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 214 LTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEEL--GTKLLDNKHGIVI-AKVDCTQ 270
+T E F +++ G + ++ C HC R W +L +K +D + I + +
Sbjct: 21 ITPEEFRQLLQ-GDAILAVYSKTCPHCHR---DWPQLIQASKEVDVPIVMFIWGSLIGER 76
Query: 271 ELSKDLC--NQEGVDGFPSIYVYKNG 294
ELS N+ GV+G P++ YK G
Sbjct: 77 ELSAARLEMNKAGVEGTPTLVFYKEG 102
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 83 LVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI----- 137
L+ +T E F + + G+ + Y+ C HC W +L K E DV I
Sbjct: 18 LIYITPEEFRQLLQ-GDAILAVYSKTCPHCHR---DWPQLIQASK-EVDVPIVMFIWGSL 72
Query: 138 ----DCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGS 172
+ + R ++ PTL++ + G+ +DK G+
Sbjct: 73 IGERELSAARLEMNKAGVEGTPTLVFYKEGRIVDKLVGA 111
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVD 267
+ T+ + +A WC C++ P +EL KL +V +D
Sbjct: 59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINID 102
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSY 154
F+ F+ WC C+ P HFK+ + V I ++ + + +F KSY
Sbjct: 30 FLNFWGTWCEPCKKEFPYXANQYKHFKS-QGVEIVAVNVGESKIAVHNF-XKSY 81
>pdb|3KP9|A Chain A, Structure Of A Bacterial Homolog Of Vitamin K Epoxide
Reductase
Length = 291
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 24/95 (25%)
Query: 95 VSLGNHF-----VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC------TQHR 143
V L H + A WC HCQ +EL F D + ++C T
Sbjct: 190 VGLAAHLRQIGGTMYGAYWCPHCQDQ----KEL---FGAAFD-QVPYVECSPNGPGTPQA 241
Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETL 178
C I SYPT WI +G+ + G R+LE L
Sbjct: 242 QECTEAGITSYPT--WIINGR---TYTGVRSLEAL 271
>pdb|1FO5|A Chain A, Solution Structure Of Reduced Mj0307
Length = 85
Score = 28.1 bits (61), Expect = 6.6, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 104 FYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG 163
F +P C HC + V +E+A+ + + V + I+ ++ + I + PT+ + +G
Sbjct: 9 FTSPMCPHCPAAKRVVEEVAN--EMPDAVEVEYINVMENPQKAMEYGIMAVPTI--VING 64
Query: 164 KKLDKFQGSRTLETLVNYVSK 184
+F G+ T E LV + K
Sbjct: 65 DV--EFIGAPTKEALVEAIKK 83
>pdb|2XOK|G Chain G, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 311
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 56 PTLTNFINEQISETPKEPSDKPIVNEGLVELTEESFEKY 94
P ++ F N+ +S EPS+KPI N +E + SF K+
Sbjct: 193 PKISIFYNDPVSSLSFEPSEKPIFNAKTIEQS-PSFGKF 230
>pdb|2HLD|G Chain G, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|P Chain P, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|Y Chain Y, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|G Chain G, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|P Chain P, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|Y Chain Y, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|G Chain G, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OEE|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEH|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OFN|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3ZRY|G Chain G, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|4B2Q|G Chain G, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|GG Chain g, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|3ZIA|G Chain G, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|Q Chain Q, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 278
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 56 PTLTNFINEQISETPKEPSDKPIVNEGLVELTEESFEKY 94
P ++ F N+ +S EPS+KPI N +E + SF K+
Sbjct: 160 PKISIFYNDPVSSLSFEPSEKPIFNAKTIEQS-PSFGKF 197
>pdb|3OE7|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
Length = 278
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 56 PTLTNFINEQISETPKEPSDKPIVNEGLVELTEESFEKY 94
P ++ F N+ +S EPS+KPI N +E + SF K+
Sbjct: 160 PKISIFYNDPVSSLSFEPSEKPIFNAKTIEQS-PSFGKF 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,704,079
Number of Sequences: 62578
Number of extensions: 394411
Number of successful extensions: 1532
Number of sequences better than 100.0: 179
Number of HSP's better than 100.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 916
Number of HSP's gapped (non-prelim): 451
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)