Query psy14086
Match_columns 324
No_of_seqs 244 out of 3596
Neff 10.4
Searched_HMMs 46136
Date Fri Aug 16 19:11:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190|consensus 100.0 3.3E-40 7.1E-45 288.8 23.0 302 5-318 73-474 (493)
2 PTZ00102 disulphide isomerase; 100.0 2.1E-34 4.5E-39 264.8 31.0 298 7-318 82-466 (477)
3 TIGR01130 ER_PDI_fam protein d 100.0 2.8E-31 6.1E-36 243.5 29.5 301 7-318 51-455 (462)
4 KOG0191|consensus 100.0 2.8E-29 6E-34 223.1 18.4 291 9-313 79-374 (383)
5 KOG0191|consensus 100.0 4.7E-29 1E-33 221.6 19.4 217 84-319 32-254 (383)
6 TIGR02187 GlrX_arch Glutaredox 100.0 8.8E-28 1.9E-32 196.5 20.4 199 88-315 10-214 (215)
7 KOG0190|consensus 99.9 1E-21 2.2E-26 172.8 17.0 206 78-316 22-234 (493)
8 PTZ00102 disulphide isomerase; 99.9 8.1E-21 1.7E-25 174.9 19.3 178 7-187 277-466 (477)
9 cd03006 PDI_a_EFP1_N PDIa fami 99.9 1.9E-21 4.2E-26 141.0 11.3 100 81-182 9-113 (113)
10 TIGR01130 ER_PDI_fam protein d 99.9 5E-20 1.1E-24 169.1 22.5 233 82-318 2-328 (462)
11 cd03006 PDI_a_EFP1_N PDIa fami 99.9 4.4E-21 9.6E-26 139.1 11.5 103 206-313 6-113 (113)
12 KOG0910|consensus 99.9 4.3E-21 9.2E-26 141.3 11.5 104 82-187 44-149 (150)
13 KOG4277|consensus 99.9 1.1E-20 2.3E-25 152.9 14.5 197 82-315 29-229 (468)
14 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 9.8E-21 2.1E-25 136.3 11.4 99 82-182 2-101 (101)
15 TIGR02187 GlrX_arch Glutaredox 99.8 4.6E-20 9.9E-25 151.0 15.7 157 10-184 56-214 (215)
16 KOG0910|consensus 99.8 1.3E-20 2.9E-25 138.7 9.5 105 209-318 43-149 (150)
17 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 3E-20 6.6E-25 134.6 11.3 99 82-182 2-104 (104)
18 PF00085 Thioredoxin: Thioredo 99.8 7.5E-20 1.6E-24 132.4 13.3 101 83-185 1-103 (103)
19 cd03065 PDI_b_Calsequestrin_N 99.8 8.9E-20 1.9E-24 133.1 12.1 104 80-186 8-119 (120)
20 cd02996 PDI_a_ERp44 PDIa famil 99.8 7.4E-20 1.6E-24 133.4 11.3 101 82-182 2-108 (108)
21 COG3118 Thioredoxin domain-con 99.8 8.5E-20 1.8E-24 148.9 11.9 106 81-188 23-132 (304)
22 cd02994 PDI_a_TMX PDIa family, 99.8 1.9E-19 4.1E-24 129.7 12.4 100 82-184 2-101 (101)
23 PF00085 Thioredoxin: Thioredo 99.8 2.1E-19 4.5E-24 130.0 12.4 101 211-316 1-103 (103)
24 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 9.2E-20 2E-24 131.2 9.9 98 210-312 2-100 (101)
25 cd03005 PDI_a_ERp46 PDIa famil 99.8 2.1E-19 4.6E-24 129.8 11.7 100 83-182 2-102 (102)
26 PTZ00062 glutaredoxin; Provisi 99.8 7.2E-19 1.6E-23 140.0 15.5 165 86-296 4-178 (204)
27 cd02996 PDI_a_ERp44 PDIa famil 99.8 1.8E-19 4E-24 131.3 10.1 102 210-313 2-108 (108)
28 cd03065 PDI_b_Calsequestrin_N 99.8 2.9E-19 6.3E-24 130.3 11.0 105 209-317 9-119 (120)
29 cd02994 PDI_a_TMX PDIa family, 99.8 3.9E-19 8.4E-24 128.0 10.9 100 210-315 2-101 (101)
30 PF01216 Calsequestrin: Calseq 99.8 6.3E-17 1.4E-21 134.0 24.7 264 6-318 87-369 (383)
31 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 2.8E-19 6.1E-24 129.5 9.3 99 210-313 2-104 (104)
32 PTZ00443 Thioredoxin domain-co 99.8 1.5E-18 3.3E-23 140.6 14.4 108 80-189 29-142 (224)
33 cd03005 PDI_a_ERp46 PDIa famil 99.8 5.6E-19 1.2E-23 127.5 10.3 101 211-313 2-102 (102)
34 cd02963 TRX_DnaJ TRX domain, D 99.8 1E-18 2.2E-23 127.6 11.5 100 84-184 7-110 (111)
35 cd03002 PDI_a_MPD1_like PDI fa 99.8 1.3E-18 2.7E-23 127.3 11.2 98 83-182 2-108 (109)
36 PRK09381 trxA thioredoxin; Pro 99.8 3.6E-18 7.8E-23 124.8 13.5 104 81-186 3-108 (109)
37 PHA02278 thioredoxin-like prot 99.8 3.5E-18 7.5E-23 121.9 12.1 92 88-181 4-100 (103)
38 cd03001 PDI_a_P5 PDIa family, 99.8 4.5E-18 9.8E-23 123.0 12.0 98 83-182 2-102 (103)
39 cd02963 TRX_DnaJ TRX domain, D 99.8 2.6E-18 5.6E-23 125.5 10.5 99 213-315 8-110 (111)
40 COG3118 Thioredoxin domain-con 99.8 1.7E-18 3.6E-23 141.4 10.2 106 209-319 23-132 (304)
41 cd02954 DIM1 Dim1 family; Dim1 99.8 2.5E-18 5.5E-23 123.3 9.8 85 88-174 2-89 (114)
42 cd02956 ybbN ybbN protein fami 99.8 4.8E-18 1E-22 121.1 11.3 92 90-183 2-96 (96)
43 TIGR01126 pdi_dom protein disu 99.8 5.7E-18 1.2E-22 122.2 11.5 100 86-185 1-101 (102)
44 cd02999 PDI_a_ERp44_like PDIa 99.8 3.5E-18 7.6E-23 122.1 9.9 83 96-182 17-100 (100)
45 cd02997 PDI_a_PDIR PDIa family 99.8 9.5E-18 2.1E-22 121.5 11.8 100 83-182 2-104 (104)
46 PRK10996 thioredoxin 2; Provis 99.8 2.4E-17 5.2E-22 125.1 14.5 103 81-185 35-138 (139)
47 cd02965 HyaE HyaE family; HyaE 99.8 1.6E-17 3.5E-22 118.2 12.0 96 82-179 11-109 (111)
48 PHA02278 thioredoxin-like prot 99.8 6E-18 1.3E-22 120.7 9.8 93 217-312 5-100 (103)
49 PTZ00443 Thioredoxin domain-co 99.8 1E-17 2.2E-22 135.7 11.9 107 208-319 29-141 (224)
50 cd03002 PDI_a_MPD1_like PDI fa 99.8 8.1E-18 1.8E-22 123.0 9.9 101 211-314 2-109 (109)
51 cd03007 PDI_a_ERp29_N PDIa fam 99.7 1.1E-17 2.5E-22 120.3 10.1 98 82-185 2-115 (116)
52 cd03007 PDI_a_ERp29_N PDIa fam 99.7 5.9E-18 1.3E-22 121.8 8.6 100 210-316 2-115 (116)
53 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 1.5E-17 3.3E-22 120.4 10.9 99 83-182 2-104 (104)
54 cd02993 PDI_a_APS_reductase PD 99.7 2.2E-17 4.8E-22 120.3 11.4 100 82-182 2-109 (109)
55 PRK09381 trxA thioredoxin; Pro 99.7 3.2E-17 7E-22 119.7 12.1 104 209-317 3-108 (109)
56 cd02999 PDI_a_ERp44_like PDIa 99.7 1.1E-17 2.5E-22 119.4 9.0 83 224-313 17-100 (100)
57 cd03000 PDI_a_TMX3 PDIa family 99.7 2.6E-17 5.6E-22 119.0 10.9 96 89-185 7-103 (104)
58 cd02954 DIM1 Dim1 family; Dim1 99.7 8.9E-18 1.9E-22 120.5 8.0 82 217-303 3-87 (114)
59 cd02956 ybbN ybbN protein fami 99.7 2.5E-17 5.5E-22 117.4 10.1 92 218-314 2-96 (96)
60 cd02998 PDI_a_ERp38 PDIa famil 99.7 3.1E-17 6.8E-22 119.0 10.7 100 83-182 2-105 (105)
61 cd02948 TRX_NDPK TRX domain, T 99.7 7.9E-17 1.7E-21 115.8 12.5 96 86-184 5-101 (102)
62 PRK10996 thioredoxin 2; Provis 99.7 5.8E-17 1.3E-21 123.0 12.3 105 208-317 34-139 (139)
63 cd03000 PDI_a_TMX3 PDIa family 99.7 3.7E-17 7.9E-22 118.2 10.7 97 217-316 7-103 (104)
64 cd02985 TRX_CDSP32 TRX family, 99.7 8.2E-17 1.8E-21 115.9 12.3 94 87-184 2-101 (103)
65 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 3.1E-17 6.7E-22 118.8 9.8 100 210-313 1-104 (104)
66 cd02997 PDI_a_PDIR PDIa family 99.7 4E-17 8.8E-22 118.2 10.3 102 211-313 2-104 (104)
67 cd03001 PDI_a_P5 PDIa family, 99.7 3.9E-17 8.4E-22 118.1 10.0 98 211-313 2-102 (103)
68 KOG4277|consensus 99.7 1.1E-15 2.4E-20 124.0 19.2 258 6-315 75-349 (468)
69 TIGR01126 pdi_dom protein disu 99.7 4E-17 8.7E-22 117.8 10.0 100 214-316 1-101 (102)
70 KOG0912|consensus 99.7 7E-16 1.5E-20 125.3 17.9 255 8-318 49-320 (375)
71 cd02965 HyaE HyaE family; HyaE 99.7 9.4E-17 2E-21 114.3 11.2 96 210-310 11-109 (111)
72 TIGR01068 thioredoxin thioredo 99.7 1.7E-16 3.6E-21 114.3 12.5 98 86-185 1-100 (101)
73 cd02962 TMX2 TMX2 family; comp 99.7 1.9E-16 4.2E-21 120.7 13.0 91 80-171 27-126 (152)
74 KOG0912|consensus 99.7 1.6E-16 3.6E-21 128.9 13.1 197 86-317 1-208 (375)
75 cd02961 PDI_a_family Protein D 99.7 1.3E-16 2.8E-21 114.7 10.3 98 85-182 2-101 (101)
76 cd02993 PDI_a_APS_reductase PD 99.7 9.1E-17 2E-21 117.1 9.4 101 210-313 2-109 (109)
77 cd02985 TRX_CDSP32 TRX family, 99.7 1.3E-16 2.8E-21 114.9 10.1 93 216-315 3-101 (103)
78 cd02957 Phd_like Phosducin (Ph 99.7 3.5E-16 7.5E-21 114.7 11.3 87 82-172 5-95 (113)
79 cd02948 TRX_NDPK TRX domain, T 99.7 3.3E-16 7.2E-21 112.6 10.8 95 215-315 6-101 (102)
80 cd02989 Phd_like_TxnDC9 Phosdu 99.7 8.4E-16 1.8E-20 112.2 12.6 98 82-182 5-112 (113)
81 PF13848 Thioredoxin_6: Thiore 99.7 4.4E-15 9.5E-20 119.1 17.8 156 9-184 22-184 (184)
82 KOG0907|consensus 99.7 3.9E-16 8.5E-21 111.3 10.0 83 98-184 22-104 (106)
83 cd02962 TMX2 TMX2 family; comp 99.7 4.1E-16 8.9E-21 118.9 10.6 91 208-302 27-126 (152)
84 PLN00410 U5 snRNP protein, DIM 99.7 1.2E-15 2.7E-20 113.8 12.1 101 87-189 10-123 (142)
85 KOG0907|consensus 99.7 7.3E-16 1.6E-20 109.9 10.2 84 226-316 22-105 (106)
86 TIGR01068 thioredoxin thioredo 99.7 9E-16 2E-20 110.4 10.4 98 215-317 2-101 (101)
87 cd02957 Phd_like Phosducin (Ph 99.7 8E-16 1.7E-20 112.8 10.0 88 209-303 4-95 (113)
88 cd02950 TxlA TRX-like protein 99.7 4.3E-15 9.3E-20 113.1 13.9 99 89-189 11-113 (142)
89 cd02989 Phd_like_TxnDC9 Phosdu 99.7 1.7E-15 3.6E-20 110.6 11.1 99 209-313 4-112 (113)
90 cd02998 PDI_a_ERp38 PDIa famil 99.7 1E-15 2.3E-20 110.9 9.9 101 211-313 2-105 (105)
91 cd02953 DsbDgamma DsbD gamma f 99.6 1E-15 2.2E-20 110.8 9.1 92 89-182 2-103 (104)
92 cd02961 PDI_a_family Protein D 99.6 8.1E-16 1.8E-20 110.5 8.3 98 213-313 2-101 (101)
93 cd02992 PDI_a_QSOX PDIa family 99.6 1.9E-15 4.2E-20 110.7 9.9 102 210-311 2-110 (114)
94 TIGR00424 APS_reduc 5'-adenyly 99.6 2.7E-15 5.9E-20 133.5 12.7 105 80-185 350-462 (463)
95 PLN02309 5'-adenylylsulfate re 99.6 3.4E-15 7.4E-20 132.9 13.1 106 79-185 343-456 (457)
96 cd02984 TRX_PICOT TRX domain, 99.6 5.1E-15 1.1E-19 105.7 11.6 92 88-182 2-96 (97)
97 cd02949 TRX_NTR TRX domain, no 99.6 3.9E-15 8.4E-20 106.1 10.7 85 97-183 13-97 (97)
98 PLN00410 U5 snRNP protein, DIM 99.6 3E-15 6.6E-20 111.7 10.5 98 216-318 11-121 (142)
99 TIGR00424 APS_reduc 5'-adenyly 99.6 2.7E-15 5.8E-20 133.6 11.1 105 207-315 349-461 (463)
100 PF13848 Thioredoxin_6: Thiore 99.6 1.1E-13 2.3E-18 111.0 19.4 170 114-315 7-184 (184)
101 cd02950 TxlA TRX-like protein 99.6 6.3E-15 1.4E-19 112.1 11.1 98 219-319 13-112 (142)
102 cd02987 Phd_like_Phd Phosducin 99.6 1.1E-14 2.3E-19 114.5 12.3 101 80-184 61-173 (175)
103 cd02949 TRX_NTR TRX domain, no 99.6 8E-15 1.7E-19 104.5 10.5 85 225-314 13-97 (97)
104 PLN02309 5'-adenylylsulfate re 99.6 4.5E-15 9.8E-20 132.1 11.3 106 207-316 343-456 (457)
105 cd02992 PDI_a_QSOX PDIa family 99.6 1E-14 2.3E-19 106.8 11.3 97 82-178 2-108 (114)
106 PTZ00051 thioredoxin; Provisio 99.6 1.4E-14 3E-19 103.6 11.1 89 87-179 7-96 (98)
107 cd02975 PfPDO_like_N Pyrococcu 99.6 1.1E-14 2.3E-19 106.5 10.2 94 91-187 15-111 (113)
108 cd02986 DLP Dim1 family, Dim1- 99.6 1E-14 2.2E-19 103.8 9.6 96 89-186 3-111 (114)
109 KOG0908|consensus 99.6 7.3E-15 1.6E-19 116.2 9.7 103 83-189 3-109 (288)
110 cd02987 Phd_like_Phd Phosducin 99.6 1.1E-14 2.3E-19 114.5 10.7 102 208-316 61-174 (175)
111 cd02984 TRX_PICOT TRX domain, 99.6 1.3E-14 2.8E-19 103.6 9.6 91 217-313 3-96 (97)
112 cd02975 PfPDO_like_N Pyrococcu 99.6 1.4E-14 3.1E-19 105.8 9.8 88 225-318 22-111 (113)
113 TIGR01295 PedC_BrcD bacterioci 99.6 3.9E-14 8.5E-19 104.6 12.1 99 81-183 6-121 (122)
114 cd02982 PDI_b'_family Protein 99.6 2.5E-14 5.3E-19 103.3 10.4 87 97-185 12-102 (103)
115 cd02953 DsbDgamma DsbD gamma f 99.6 9.4E-15 2E-19 105.6 7.8 93 219-314 4-104 (104)
116 cd02947 TRX_family TRX family; 99.6 6.9E-14 1.5E-18 98.6 11.0 90 90-182 2-92 (93)
117 PTZ00051 thioredoxin; Provisio 99.5 4.6E-14 1E-18 100.9 9.9 93 211-310 2-96 (98)
118 TIGR01295 PedC_BrcD bacterioci 99.5 4.5E-14 9.8E-19 104.3 9.9 100 210-314 7-121 (122)
119 KOG0908|consensus 99.5 3E-14 6.4E-19 112.8 9.2 102 211-319 3-108 (288)
120 PF01216 Calsequestrin: Calseq 99.5 5.1E-12 1.1E-16 105.2 20.9 206 78-317 31-247 (383)
121 cd02947 TRX_family TRX family; 99.5 1.3E-13 2.8E-18 97.2 10.2 89 219-313 3-92 (93)
122 cd02986 DLP Dim1 family, Dim1- 99.5 6.7E-14 1.5E-18 99.6 8.3 86 225-315 14-109 (114)
123 cd02988 Phd_like_VIAF Phosduci 99.5 2.3E-13 5E-18 108.3 11.7 99 80-184 81-190 (192)
124 cd02951 SoxW SoxW family; SoxW 99.5 2.5E-13 5.5E-18 101.6 11.1 97 90-188 5-121 (125)
125 cd02982 PDI_b'_family Protein 99.5 1.5E-13 3.3E-18 99.2 9.1 87 225-316 12-102 (103)
126 cd02988 Phd_like_VIAF Phosduci 99.5 2.1E-13 4.6E-18 108.6 9.8 98 209-315 82-190 (192)
127 KOG1731|consensus 99.5 1.9E-13 4.2E-18 120.7 10.2 220 78-318 36-270 (606)
128 TIGR00411 redox_disulf_1 small 99.5 4.8E-13 1E-17 92.2 10.0 79 101-185 3-81 (82)
129 cd02951 SoxW SoxW family; SoxW 99.4 1E-12 2.2E-17 98.3 9.9 91 226-319 15-121 (125)
130 TIGR03143 AhpF_homolog putativ 99.4 2E-11 4.4E-16 114.0 19.1 182 100-313 369-554 (555)
131 TIGR00411 redox_disulf_1 small 99.4 3.5E-12 7.5E-17 87.9 9.9 80 228-316 2-81 (82)
132 cd02952 TRP14_like Human TRX-r 99.4 3.5E-12 7.5E-17 92.9 8.8 91 87-182 8-118 (119)
133 cd02952 TRP14_like Human TRX-r 99.4 3.7E-12 7.9E-17 92.7 8.2 94 216-313 9-118 (119)
134 PTZ00062 glutaredoxin; Provisi 99.3 6.8E-12 1.5E-16 100.2 9.5 88 216-318 6-95 (204)
135 TIGR03143 AhpF_homolog putativ 99.3 6.6E-11 1.4E-15 110.6 15.2 159 6-182 394-554 (555)
136 PRK11509 hydrogenase-1 operon 99.3 1.3E-10 2.7E-15 85.5 12.3 106 83-189 19-127 (132)
137 TIGR00412 redox_disulf_2 small 99.2 6E-11 1.3E-15 80.0 8.8 72 102-182 3-75 (76)
138 PHA02125 thioredoxin-like prot 99.2 8.6E-11 1.9E-15 79.1 9.2 70 101-181 2-72 (75)
139 PHA02125 thioredoxin-like prot 99.2 7.4E-11 1.6E-15 79.4 8.9 69 229-311 2-71 (75)
140 PF13098 Thioredoxin_2: Thiore 99.2 3.9E-11 8.4E-16 87.9 7.8 84 97-182 5-112 (112)
141 KOG1731|consensus 99.2 8.3E-12 1.8E-16 110.5 4.6 111 208-318 38-154 (606)
142 TIGR02738 TrbB type-F conjugat 99.2 3E-10 6.5E-15 87.0 11.9 87 97-185 50-152 (153)
143 cd02959 ERp19 Endoplasmic reti 99.2 3.7E-11 8E-16 88.2 6.6 96 89-186 10-113 (117)
144 PRK11509 hydrogenase-1 operon 99.2 2.4E-10 5.2E-15 84.1 10.5 105 211-319 19-126 (132)
145 cd02959 ERp19 Endoplasmic reti 99.2 4.7E-11 1E-15 87.6 6.1 89 225-317 19-113 (117)
146 TIGR02740 TraF-like TraF-like 99.2 3.2E-10 7E-15 95.5 11.9 90 96-187 165-265 (271)
147 TIGR00412 redox_disulf_2 small 99.2 1.5E-10 3.2E-15 78.0 7.9 72 230-313 3-75 (76)
148 PRK14018 trifunctional thiored 99.2 2.2E-10 4.7E-15 103.8 11.0 89 96-185 55-172 (521)
149 PRK14018 trifunctional thiored 99.2 4E-10 8.6E-15 102.1 12.1 88 224-315 55-171 (521)
150 PRK00293 dipZ thiol:disulfide 99.1 4.2E-10 9.1E-15 104.8 11.4 100 83-185 454-569 (571)
151 TIGR02738 TrbB type-F conjugat 99.1 7.4E-10 1.6E-14 84.9 10.8 87 225-316 50-152 (153)
152 PF13098 Thioredoxin_2: Thiore 99.1 1.7E-10 3.6E-15 84.5 6.9 87 225-313 5-112 (112)
153 PRK03147 thiol-disulfide oxido 99.1 1.8E-09 4E-14 85.5 12.3 106 209-316 44-171 (173)
154 cd03026 AhpF_NTD_C TRX-GRX-lik 99.1 8.6E-10 1.9E-14 76.5 9.0 77 96-179 11-87 (89)
155 PRK03147 thiol-disulfide oxido 99.1 1.4E-09 2.9E-14 86.3 11.4 102 83-185 46-171 (173)
156 PRK15412 thiol:disulfide inter 99.1 1.6E-09 3.5E-14 86.6 11.3 88 96-188 67-178 (185)
157 TIGR02740 TraF-like TraF-like 99.1 1.5E-09 3.3E-14 91.5 11.3 90 224-318 165-265 (271)
158 TIGR00385 dsbE periplasmic pro 99.1 1.8E-09 3.9E-14 85.4 11.0 89 224-318 62-172 (173)
159 PRK15412 thiol:disulfide inter 99.1 1.6E-09 3.4E-14 86.7 10.5 89 224-318 67-177 (185)
160 cd02955 SSP411 TRX domain, SSP 99.1 1.8E-09 4E-14 79.5 9.9 96 87-184 4-117 (124)
161 cd03008 TryX_like_RdCVF Trypar 99.1 1.1E-09 2.4E-14 82.9 8.8 71 96-166 24-125 (146)
162 cd02973 TRX_GRX_like Thioredox 99.1 6.1E-10 1.3E-14 73.3 6.5 56 101-159 3-58 (67)
163 cd03010 TlpA_like_DsbE TlpA-li 99.0 1.8E-09 3.9E-14 80.9 9.8 79 96-178 24-126 (127)
164 PF13905 Thioredoxin_8: Thiore 99.0 1.7E-09 3.7E-14 76.6 8.9 66 98-163 2-92 (95)
165 TIGR00385 dsbE periplasmic pro 99.0 2.1E-09 4.6E-14 85.0 10.3 87 96-187 62-172 (173)
166 cd03011 TlpA_like_ScsD_MtbDsbE 99.0 2E-09 4.4E-14 80.1 9.5 81 96-180 19-120 (123)
167 PRK00293 dipZ thiol:disulfide 99.0 1.3E-09 2.7E-14 101.7 10.0 88 225-316 474-569 (571)
168 PRK15317 alkyl hydroperoxide r 99.0 3.2E-08 7E-13 92.0 19.3 177 97-316 18-197 (517)
169 cd03026 AhpF_NTD_C TRX-GRX-lik 99.0 3E-09 6.5E-14 73.8 8.6 78 223-310 10-87 (89)
170 cd02955 SSP411 TRX domain, SSP 99.0 2E-09 4.4E-14 79.3 7.8 87 225-316 15-118 (124)
171 cd02973 TRX_GRX_like Thioredox 99.0 1.8E-09 4E-14 71.0 6.6 56 229-290 3-58 (67)
172 cd03009 TryX_like_TryX_NRX Try 99.0 3.2E-09 7E-14 80.0 8.4 70 96-165 17-112 (131)
173 PLN02919 haloacid dehalogenase 99.0 1.1E-08 2.4E-13 101.8 14.2 94 93-187 416-537 (1057)
174 cd02964 TryX_like_family Trypa 99.0 3.1E-09 6.8E-14 80.1 8.0 68 96-163 16-109 (132)
175 PRK13728 conjugal transfer pro 98.9 1.1E-08 2.4E-13 79.8 10.9 85 101-187 73-172 (181)
176 cd03010 TlpA_like_DsbE TlpA-li 98.9 5.1E-09 1.1E-13 78.4 8.5 79 224-309 24-126 (127)
177 cd03009 TryX_like_TryX_NRX Try 98.9 5.4E-09 1.2E-13 78.8 8.6 74 224-297 17-113 (131)
178 KOG0913|consensus 98.9 3.5E-10 7.5E-15 89.4 2.1 101 209-315 24-124 (248)
179 cd02958 UAS UAS family; UAS is 98.9 1.2E-08 2.6E-13 74.8 9.9 91 225-318 17-112 (114)
180 PLN02919 haloacid dehalogenase 98.9 1.7E-08 3.6E-13 100.5 13.7 95 222-318 417-537 (1057)
181 cd02964 TryX_like_family Trypa 98.9 5.1E-09 1.1E-13 79.0 7.8 74 224-297 16-113 (132)
182 cd03008 TryX_like_RdCVF Trypar 98.9 8.7E-09 1.9E-13 78.1 8.7 74 224-297 24-126 (146)
183 cd03011 TlpA_like_ScsD_MtbDsbE 98.9 1.5E-08 3.2E-13 75.5 10.0 97 211-312 5-121 (123)
184 PF13905 Thioredoxin_8: Thiore 98.9 1E-08 2.3E-13 72.5 8.3 68 225-293 1-91 (95)
185 PRK13728 conjugal transfer pro 98.9 1.8E-08 3.9E-13 78.6 10.1 86 229-319 73-173 (181)
186 TIGR03140 AhpF alkyl hydropero 98.9 2.9E-07 6.3E-12 85.6 19.5 177 97-316 18-198 (515)
187 cd02966 TlpA_like_family TlpA- 98.9 1.4E-08 3E-13 74.3 8.7 74 97-171 19-116 (116)
188 KOG0913|consensus 98.8 1.1E-09 2.3E-14 86.6 1.9 103 82-187 25-127 (248)
189 cd02958 UAS UAS family; UAS is 98.8 6.8E-08 1.5E-12 70.8 10.9 90 96-187 16-112 (114)
190 KOG0914|consensus 98.8 6.3E-09 1.4E-13 81.2 5.5 93 202-298 117-219 (265)
191 KOG0914|consensus 98.8 7.6E-09 1.6E-13 80.7 5.9 90 78-168 121-220 (265)
192 KOG0911|consensus 98.8 1.7E-08 3.7E-13 79.7 7.6 180 96-295 16-203 (227)
193 cd02966 TlpA_like_family TlpA- 98.8 3.2E-08 7E-13 72.3 8.6 74 225-302 19-116 (116)
194 PRK15317 alkyl hydroperoxide r 98.8 1.8E-07 3.9E-12 87.1 14.9 137 31-186 60-198 (517)
195 cd03072 PDI_b'_ERp44 PDIb' fam 98.8 8.6E-08 1.9E-12 69.5 9.9 102 83-188 1-110 (111)
196 cd03012 TlpA_like_DipZ_like Tl 98.8 6.3E-08 1.4E-12 72.4 9.4 76 96-172 22-125 (126)
197 smart00594 UAS UAS domain. 98.8 8.3E-08 1.8E-12 71.1 9.5 86 225-313 27-121 (122)
198 cd02960 AGR Anterior Gradient 98.7 8.6E-08 1.9E-12 70.6 8.6 94 225-324 23-130 (130)
199 PLN02399 phospholipid hydroper 98.7 1.4E-07 3E-12 77.5 10.6 91 96-187 98-235 (236)
200 PF08534 Redoxin: Redoxin; In 98.7 1.5E-07 3.3E-12 72.2 10.2 81 223-305 26-136 (146)
201 cd03012 TlpA_like_DipZ_like Tl 98.7 9.8E-08 2.1E-12 71.3 8.6 78 224-303 22-125 (126)
202 TIGR03140 AhpF alkyl hydropero 98.7 5.4E-07 1.2E-11 83.8 14.8 137 31-186 61-199 (515)
203 smart00594 UAS UAS domain. 98.7 4E-07 8.8E-12 67.4 10.7 85 96-182 26-121 (122)
204 cd02967 mauD Methylamine utili 98.7 1.8E-07 3.9E-12 68.5 8.8 66 224-292 20-103 (114)
205 cd03073 PDI_b'_ERp72_ERp57 PDI 98.7 3.2E-07 6.8E-12 66.4 9.8 98 85-185 3-110 (111)
206 cd02967 mauD Methylamine utili 98.6 6.5E-08 1.4E-12 70.9 6.1 58 97-156 21-81 (114)
207 cd02983 P5_C P5 family, C-term 98.6 8.6E-07 1.9E-11 66.2 11.7 107 82-190 3-119 (130)
208 PTZ00056 glutathione peroxidas 98.6 3.3E-07 7.1E-12 73.9 9.6 92 96-188 38-180 (199)
209 PF08534 Redoxin: Redoxin; In 98.6 4E-07 8.8E-12 69.9 9.7 79 95-174 26-136 (146)
210 TIGR02661 MauD methylamine deh 98.6 5.7E-07 1.2E-11 72.1 10.8 90 96-188 73-181 (189)
211 TIGR01626 ytfJ_HI0045 conserve 98.6 3.2E-07 7E-12 72.1 8.9 81 97-182 59-176 (184)
212 PLN02399 phospholipid hydroper 98.6 6E-07 1.3E-11 73.8 10.6 93 224-318 98-235 (236)
213 PLN02412 probable glutathione 98.6 4.4E-07 9.6E-12 71.2 8.8 91 96-187 28-165 (167)
214 PTZ00056 glutathione peroxidas 98.5 7.5E-07 1.6E-11 71.9 9.8 94 224-319 38-180 (199)
215 cd02969 PRX_like1 Peroxiredoxi 98.5 1.5E-06 3.2E-11 68.7 11.3 92 96-189 24-155 (171)
216 COG4232 Thiol:disulfide interc 98.5 1.4E-07 3.1E-12 85.1 5.6 103 212-316 457-567 (569)
217 TIGR01626 ytfJ_HI0045 conserve 98.5 5.9E-07 1.3E-11 70.7 8.3 89 225-313 59-176 (184)
218 cd02983 P5_C P5 family, C-term 98.5 2.3E-06 4.9E-11 63.9 10.6 105 209-318 2-116 (130)
219 PF13899 Thioredoxin_7: Thiore 98.5 3.2E-07 7E-12 62.8 5.5 64 96-162 16-82 (82)
220 PLN02412 probable glutathione 98.5 2.4E-06 5.3E-11 67.0 11.1 93 224-318 28-165 (167)
221 COG4232 Thiol:disulfide interc 98.5 6.3E-07 1.4E-11 81.0 8.7 99 84-185 457-567 (569)
222 cd02960 AGR Anterior Gradient 98.5 9.4E-07 2E-11 65.2 8.1 73 96-171 22-98 (130)
223 PF02114 Phosducin: Phosducin; 98.5 2E-06 4.4E-11 71.9 11.0 101 81-185 125-237 (265)
224 PF02114 Phosducin: Phosducin; 98.5 1.7E-06 3.7E-11 72.4 10.3 101 209-316 125-237 (265)
225 KOG2501|consensus 98.5 6.2E-07 1.4E-11 67.4 6.8 76 222-297 30-129 (157)
226 TIGR02661 MauD methylamine deh 98.5 2.7E-06 5.8E-11 68.2 11.0 101 210-315 56-177 (189)
227 cd00340 GSH_Peroxidase Glutath 98.4 1.3E-06 2.8E-11 67.5 8.5 41 97-139 22-62 (152)
228 TIGR02540 gpx7 putative glutat 98.4 2.7E-06 6E-11 65.8 10.2 89 96-185 21-152 (153)
229 TIGR02196 GlrX_YruB Glutaredox 98.4 1.4E-06 3.1E-11 58.1 7.5 69 101-183 2-74 (74)
230 PF13728 TraF: F plasmid trans 98.4 3.5E-06 7.7E-11 68.6 11.1 84 96-181 119-213 (215)
231 TIGR02196 GlrX_YruB Glutaredox 98.4 1.5E-06 3.2E-11 58.0 7.4 69 229-314 2-74 (74)
232 KOG1672|consensus 98.4 1.2E-06 2.6E-11 67.5 7.4 87 82-171 67-155 (211)
233 PF13192 Thioredoxin_3: Thiore 98.4 3.7E-06 8E-11 56.6 9.0 71 104-183 5-76 (76)
234 COG0526 TrxA Thiol-disulfide i 98.4 1.6E-06 3.6E-11 63.4 8.0 82 97-180 32-118 (127)
235 PF13899 Thioredoxin_7: Thiore 98.4 7.7E-07 1.7E-11 60.9 5.5 62 225-292 17-81 (82)
236 KOG2501|consensus 98.4 9.4E-07 2E-11 66.5 6.0 73 94-166 30-129 (157)
237 COG0526 TrxA Thiol-disulfide i 98.4 2.3E-06 5E-11 62.6 8.1 84 225-313 32-120 (127)
238 PTZ00256 glutathione peroxidas 98.3 5.7E-06 1.2E-10 66.0 10.4 90 97-187 40-182 (183)
239 KOG2603|consensus 98.3 5.8E-06 1.3E-10 68.7 10.4 109 81-189 40-169 (331)
240 PF07912 ERp29_N: ERp29, N-ter 98.3 1.7E-05 3.7E-10 56.8 11.3 108 209-318 4-120 (126)
241 TIGR02540 gpx7 putative glutat 98.3 5.3E-06 1.2E-10 64.2 9.7 91 224-316 21-152 (153)
242 KOG1672|consensus 98.3 3.5E-06 7.6E-11 65.0 8.3 100 209-314 66-175 (211)
243 cd02969 PRX_like1 Peroxiredoxi 98.3 1.1E-05 2.3E-10 63.8 11.0 100 219-320 19-155 (171)
244 PF13192 Thioredoxin_3: Thiore 98.3 7.4E-06 1.6E-10 55.1 8.5 71 232-314 5-76 (76)
245 cd00340 GSH_Peroxidase Glutath 98.3 3.8E-06 8.3E-11 64.9 8.1 86 224-312 21-151 (152)
246 cd01659 TRX_superfamily Thiore 98.3 3.5E-06 7.6E-11 54.2 6.8 60 101-163 1-63 (69)
247 COG2143 Thioredoxin-related pr 98.3 1.1E-05 2.5E-10 59.9 9.8 90 97-188 42-151 (182)
248 PF13728 TraF: F plasmid trans 98.3 6.6E-06 1.4E-10 67.0 9.5 84 225-313 120-214 (215)
249 TIGR02200 GlrX_actino Glutared 98.3 5.1E-06 1.1E-10 56.0 7.2 70 229-314 2-76 (77)
250 TIGR02200 GlrX_actino Glutared 98.2 6.3E-06 1.4E-10 55.5 7.1 70 101-183 2-76 (77)
251 cd03017 PRX_BCP Peroxiredoxin 98.2 1.5E-05 3.3E-10 60.6 10.0 86 225-312 23-138 (140)
252 TIGR02739 TraF type-F conjugat 98.2 2.5E-05 5.5E-10 64.8 11.3 90 97-188 150-250 (256)
253 cd01659 TRX_superfamily Thiore 98.2 7.6E-06 1.7E-10 52.6 6.9 60 229-294 1-63 (69)
254 cd03017 PRX_BCP Peroxiredoxin 98.2 1.7E-05 3.6E-10 60.3 9.1 84 97-181 23-138 (140)
255 PRK13703 conjugal pilus assemb 98.1 3.9E-05 8.5E-10 63.3 11.1 90 97-188 143-243 (248)
256 PF07912 ERp29_N: ERp29, N-ter 98.1 0.00012 2.6E-09 52.5 11.9 105 81-187 4-120 (126)
257 cd03073 PDI_b'_ERp72_ERp57 PDI 98.1 2E-05 4.2E-10 57.1 8.0 98 213-316 3-110 (111)
258 COG2143 Thioredoxin-related pr 98.1 4.1E-05 8.9E-10 57.0 9.5 86 226-314 43-146 (182)
259 cd03072 PDI_b'_ERp44 PDIb' fam 98.1 2.3E-05 5.1E-10 56.8 8.1 102 211-318 1-109 (111)
260 PF00578 AhpC-TSA: AhpC/TSA fa 98.1 3.7E-05 8E-10 57.0 9.4 75 219-296 20-120 (124)
261 PF14595 Thioredoxin_9: Thiore 98.1 3.8E-05 8.3E-10 57.1 8.9 71 96-169 40-114 (129)
262 PRK11200 grxA glutaredoxin 1; 98.1 4.5E-05 9.7E-10 52.5 8.6 77 100-187 2-84 (85)
263 cd02991 UAS_ETEA UAS family, E 98.0 4E-05 8.8E-10 55.9 8.7 90 225-318 17-114 (116)
264 PF00578 AhpC-TSA: AhpC/TSA fa 98.0 3.3E-05 7.2E-10 57.3 8.1 70 96-166 24-121 (124)
265 PRK13703 conjugal pilus assemb 98.0 6.8E-05 1.5E-09 61.9 10.4 94 225-321 143-245 (248)
266 cd02991 UAS_ETEA UAS family, E 98.0 6E-05 1.3E-09 55.0 8.8 88 97-187 17-114 (116)
267 PF14595 Thioredoxin_9: Thiore 98.0 2.5E-05 5.4E-10 58.1 6.9 82 225-314 41-126 (129)
268 PF06110 DUF953: Eukaryotic pr 98.0 4.4E-05 9.5E-10 55.5 7.8 66 98-165 20-101 (119)
269 TIGR02739 TraF type-F conjugat 98.0 8.3E-05 1.8E-09 61.7 10.5 91 225-320 150-251 (256)
270 PTZ00256 glutathione peroxidas 98.0 8.8E-05 1.9E-09 59.1 10.4 92 225-318 40-182 (183)
271 cd02970 PRX_like2 Peroxiredoxi 98.0 7.4E-05 1.6E-09 57.3 9.6 49 93-142 19-68 (149)
272 PF06110 DUF953: Eukaryotic pr 98.0 3.5E-05 7.6E-10 56.0 7.0 83 226-314 20-118 (119)
273 PF07449 HyaE: Hydrogenase-1 e 98.0 4E-05 8.8E-10 54.3 7.0 91 82-174 10-103 (107)
274 cd03015 PRX_Typ2cys Peroxiredo 98.0 7.9E-05 1.7E-09 58.9 9.6 89 97-186 29-157 (173)
275 cd02970 PRX_like2 Peroxiredoxi 97.9 8.4E-05 1.8E-09 57.0 9.4 47 222-270 20-67 (149)
276 cd03015 PRX_Typ2cys Peroxiredo 97.9 0.00014 2.9E-09 57.6 10.8 91 224-316 28-156 (173)
277 cd02981 PDI_b_family Protein D 97.9 0.00014 3E-09 51.4 9.7 87 89-184 8-96 (97)
278 TIGR02180 GRX_euk Glutaredoxin 97.9 2.3E-05 4.9E-10 53.8 5.5 58 101-164 1-63 (84)
279 cd02981 PDI_b_family Protein D 97.9 8.5E-05 1.8E-09 52.5 8.3 85 219-315 10-96 (97)
280 PRK00522 tpx lipid hydroperoxi 97.9 0.00015 3.3E-09 56.9 9.7 84 96-182 43-165 (167)
281 PRK09437 bcp thioredoxin-depen 97.9 0.00036 7.8E-09 54.0 11.5 83 224-308 29-144 (154)
282 PRK11200 grxA glutaredoxin 1; 97.9 0.00015 3.3E-09 49.9 8.3 79 228-318 2-84 (85)
283 KOG2603|consensus 97.8 0.00029 6.3E-09 58.8 11.2 108 209-318 40-167 (331)
284 TIGR03137 AhpC peroxiredoxin. 97.8 0.00021 4.5E-09 57.2 10.0 89 96-185 30-155 (187)
285 PRK15000 peroxidase; Provision 97.8 0.00033 7.1E-09 56.6 10.8 93 221-315 30-160 (200)
286 cd03067 PDI_b_PDIR_N PDIb fami 97.8 0.0002 4.3E-09 49.2 7.9 94 88-184 9-110 (112)
287 cd03018 PRX_AhpE_like Peroxire 97.8 0.00035 7.7E-09 53.6 10.6 76 226-303 29-133 (149)
288 TIGR02180 GRX_euk Glutaredoxin 97.8 5.1E-05 1.1E-09 52.0 5.2 72 229-314 1-76 (84)
289 TIGR03137 AhpC peroxiredoxin. 97.8 0.00037 8E-09 55.8 10.6 90 224-315 30-154 (187)
290 PRK15000 peroxidase; Provision 97.8 0.00025 5.5E-09 57.2 9.7 96 90-186 27-162 (200)
291 KOG3425|consensus 97.7 0.00012 2.5E-09 52.0 6.3 65 226-293 26-104 (128)
292 PRK09437 bcp thioredoxin-depen 97.7 0.00037 7.9E-09 53.9 9.8 81 96-177 29-144 (154)
293 cd02968 SCO SCO (an acronym fo 97.7 0.00016 3.5E-09 55.0 7.5 44 96-139 21-67 (142)
294 PF07449 HyaE: Hydrogenase-1 e 97.7 0.00021 4.6E-09 50.7 7.0 92 209-305 9-103 (107)
295 PRK00522 tpx lipid hydroperoxi 97.7 0.00057 1.2E-08 53.6 10.1 87 224-314 43-166 (167)
296 PRK13190 putative peroxiredoxi 97.7 0.00042 9.2E-09 56.1 9.5 86 101-187 32-155 (202)
297 cd03018 PRX_AhpE_like Peroxire 97.7 0.0005 1.1E-08 52.7 9.6 74 98-172 29-133 (149)
298 PF03190 Thioredox_DsbH: Prote 97.7 0.00053 1.2E-08 52.6 9.3 97 57-166 7-116 (163)
299 PRK10382 alkyl hydroperoxide r 97.6 0.0011 2.3E-08 52.9 11.0 89 225-315 31-154 (187)
300 PRK10877 protein disulfide iso 97.6 0.00044 9.5E-09 57.2 9.1 81 226-316 108-230 (232)
301 PRK10877 protein disulfide iso 97.6 0.00061 1.3E-08 56.3 9.9 80 99-185 109-230 (232)
302 KOG3425|consensus 97.6 0.0005 1.1E-08 48.9 7.5 65 96-162 24-104 (128)
303 cd02976 NrdH NrdH-redoxin (Nrd 97.6 0.00045 9.7E-09 45.6 7.2 67 101-181 2-72 (73)
304 cd02976 NrdH NrdH-redoxin (Nrd 97.6 0.00032 7E-09 46.3 6.5 67 229-312 2-72 (73)
305 cd03014 PRX_Atyp2cys Peroxired 97.6 0.00046 1E-08 52.6 8.0 73 96-171 25-128 (143)
306 TIGR02183 GRXA Glutaredoxin, G 97.6 0.00059 1.3E-08 47.0 7.7 76 101-187 2-83 (86)
307 PRK10382 alkyl hydroperoxide r 97.5 0.0011 2.3E-08 52.9 10.1 89 97-186 31-156 (187)
308 PRK13190 putative peroxiredoxi 97.5 0.0011 2.3E-08 53.7 10.3 90 225-316 27-153 (202)
309 PRK10606 btuE putative glutath 97.5 0.00068 1.5E-08 53.7 8.5 43 96-140 24-66 (183)
310 PRK10606 btuE putative glutath 97.5 0.00062 1.3E-08 54.0 8.3 55 211-269 10-66 (183)
311 cd02971 PRX_family Peroxiredox 97.5 0.0006 1.3E-08 51.7 8.0 44 96-140 21-65 (140)
312 PF05768 DUF836: Glutaredoxin- 97.5 0.00035 7.6E-09 47.5 5.8 78 101-183 2-81 (81)
313 cd02971 PRX_family Peroxiredox 97.5 0.001 2.2E-08 50.4 8.9 78 224-303 21-129 (140)
314 PF00462 Glutaredoxin: Glutare 97.5 0.00053 1.1E-08 43.6 6.1 56 229-295 1-58 (60)
315 cd02968 SCO SCO (an acronym fo 97.4 0.00062 1.3E-08 51.8 7.2 46 224-269 21-68 (142)
316 PF11009 DUF2847: Protein of u 97.4 0.0034 7.3E-08 44.4 10.0 90 87-178 6-104 (105)
317 TIGR02183 GRXA Glutaredoxin, G 97.4 0.0012 2.6E-08 45.4 7.8 77 229-317 2-82 (86)
318 cd03016 PRX_1cys Peroxiredoxin 97.4 0.0015 3.2E-08 53.0 9.4 86 100-186 29-154 (203)
319 PF03190 Thioredox_DsbH: Prote 97.4 0.00037 7.9E-09 53.5 5.4 74 219-297 30-116 (163)
320 PTZ00137 2-Cys peroxiredoxin; 97.3 0.0029 6.3E-08 53.0 10.6 94 92-186 93-225 (261)
321 cd03066 PDI_b_Calsequestrin_mi 97.3 0.0043 9.4E-08 44.2 10.1 93 84-185 3-100 (102)
322 KOG0911|consensus 97.3 0.00013 2.9E-09 58.0 2.4 75 225-305 17-91 (227)
323 KOG3414|consensus 97.3 0.0022 4.9E-08 46.0 8.2 99 89-189 12-123 (142)
324 cd03014 PRX_Atyp2cys Peroxired 97.3 0.002 4.4E-08 49.0 8.7 75 224-302 25-128 (143)
325 PTZ00137 2-Cys peroxiredoxin; 97.3 0.004 8.7E-08 52.2 10.8 95 220-316 93-224 (261)
326 PF00462 Glutaredoxin: Glutare 97.2 0.0012 2.5E-08 42.0 5.7 51 101-159 1-55 (60)
327 cd03067 PDI_b_PDIR_N PDIb fami 97.2 0.0012 2.6E-08 45.5 5.9 95 217-315 10-110 (112)
328 cd03020 DsbA_DsbC_DsbG DsbA fa 97.2 0.002 4.4E-08 52.0 8.4 77 98-182 78-197 (197)
329 TIGR02190 GlrX-dom Glutaredoxi 97.2 0.0017 3.8E-08 43.8 6.5 71 226-313 7-78 (79)
330 TIGR02190 GlrX-dom Glutaredoxi 97.2 0.0025 5.5E-08 43.0 7.3 69 98-182 7-78 (79)
331 PRK13599 putative peroxiredoxi 97.2 0.0044 9.5E-08 50.6 9.7 88 97-185 28-155 (215)
332 cd03069 PDI_b_ERp57 PDIb famil 97.2 0.0059 1.3E-07 43.6 9.3 89 87-185 7-103 (104)
333 PF05768 DUF836: Glutaredoxin- 97.1 0.0019 4.1E-08 43.9 6.3 78 229-314 2-81 (81)
334 PRK13189 peroxiredoxin; Provis 97.1 0.0037 8.1E-08 51.3 9.2 85 101-186 40-163 (222)
335 cd03020 DsbA_DsbC_DsbG DsbA fa 97.1 0.0023 4.9E-08 51.7 7.7 78 225-313 77-197 (197)
336 cd03419 GRX_GRXh_1_2_like Glut 97.1 0.0015 3.2E-08 44.4 5.4 71 229-314 2-75 (82)
337 PRK11657 dsbG disulfide isomer 97.1 0.0054 1.2E-07 51.4 9.8 81 99-183 119-249 (251)
338 cd03016 PRX_1cys Peroxiredoxin 97.1 0.0071 1.5E-07 49.0 10.1 87 228-316 29-153 (203)
339 PRK13191 putative peroxiredoxi 97.1 0.0068 1.5E-07 49.5 10.0 90 96-186 32-161 (215)
340 PRK13599 putative peroxiredoxi 97.1 0.0076 1.6E-07 49.2 10.2 91 224-316 27-155 (215)
341 PF13462 Thioredoxin_4: Thiore 97.0 0.009 2E-07 46.4 10.3 81 99-184 14-162 (162)
342 cd03066 PDI_b_Calsequestrin_mi 97.0 0.0073 1.6E-07 43.0 8.7 94 211-316 2-100 (102)
343 PRK13191 putative peroxiredoxi 97.0 0.0092 2E-07 48.8 10.4 91 224-316 32-160 (215)
344 PRK13189 peroxiredoxin; Provis 97.0 0.0095 2.1E-07 49.0 10.2 91 224-316 34-162 (222)
345 PF02966 DIM1: Mitosis protein 97.0 0.015 3.3E-07 42.5 9.9 96 89-187 9-118 (133)
346 KOG3414|consensus 96.9 0.019 4.1E-07 41.4 9.8 85 226-315 24-118 (142)
347 cd03419 GRX_GRXh_1_2_like Glut 96.9 0.0026 5.6E-08 43.2 5.5 69 101-183 2-75 (82)
348 TIGR02194 GlrX_NrdH Glutaredox 96.9 0.0043 9.3E-08 41.0 6.4 66 102-180 2-70 (72)
349 cd03023 DsbA_Com1_like DsbA fa 96.9 0.014 3E-07 44.8 9.8 29 99-127 7-35 (154)
350 PRK10329 glutaredoxin-like pro 96.9 0.0099 2.1E-07 40.3 7.8 72 229-317 3-77 (81)
351 PRK10329 glutaredoxin-like pro 96.9 0.02 4.4E-07 38.8 9.3 72 101-186 3-77 (81)
352 TIGR02194 GlrX_NrdH Glutaredox 96.8 0.0026 5.5E-08 42.1 4.5 66 230-311 2-70 (72)
353 KOG3171|consensus 96.8 0.0054 1.2E-07 48.4 6.7 101 209-316 138-250 (273)
354 PTZ00253 tryparedoxin peroxida 96.8 0.015 3.3E-07 47.0 9.7 89 97-186 36-164 (199)
355 cd02066 GRX_family Glutaredoxi 96.8 0.004 8.8E-08 40.7 5.3 56 229-297 2-61 (72)
356 TIGR02181 GRX_bact Glutaredoxi 96.8 0.0023 5E-08 43.2 4.1 55 229-296 1-59 (79)
357 PHA03050 glutaredoxin; Provisi 96.7 0.0057 1.2E-07 44.0 6.2 65 91-159 6-75 (108)
358 cd03029 GRX_hybridPRX5 Glutare 96.7 0.011 2.3E-07 39.0 7.1 68 229-313 3-71 (72)
359 PTZ00253 tryparedoxin peroxida 96.7 0.027 5.8E-07 45.5 10.6 89 225-315 36-162 (199)
360 cd03029 GRX_hybridPRX5 Glutare 96.7 0.019 4.1E-07 37.8 8.2 66 101-182 3-71 (72)
361 PRK11657 dsbG disulfide isomer 96.7 0.016 3.6E-07 48.5 9.3 84 226-314 118-249 (251)
362 cd03069 PDI_b_ERp57 PDIb famil 96.6 0.017 3.8E-07 41.2 8.0 87 217-316 9-103 (104)
363 cd03418 GRX_GRXb_1_3_like Glut 96.6 0.0057 1.2E-07 40.7 5.1 56 229-297 2-62 (75)
364 cd02066 GRX_family Glutaredoxi 96.6 0.0063 1.4E-07 39.7 5.2 55 101-165 2-60 (72)
365 cd03074 PDI_b'_Calsequestrin_C 96.6 0.1 2.2E-06 36.6 10.9 104 83-186 3-120 (120)
366 TIGR02189 GlrX-like_plant Glut 96.5 0.0052 1.1E-07 43.5 4.6 59 228-297 9-72 (99)
367 PHA03050 glutaredoxin; Provisi 96.5 0.0062 1.3E-07 43.8 4.9 62 228-297 14-80 (108)
368 cd03027 GRX_DEP Glutaredoxin ( 96.5 0.0074 1.6E-07 40.0 5.0 55 229-296 3-61 (73)
369 cd03418 GRX_GRXb_1_3_like Glut 96.4 0.012 2.6E-07 39.0 5.9 50 101-158 2-56 (75)
370 TIGR02181 GRX_bact Glutaredoxi 96.4 0.0051 1.1E-07 41.4 4.1 51 101-159 1-55 (79)
371 cd03074 PDI_b'_Calsequestrin_C 96.4 0.066 1.4E-06 37.5 9.1 104 211-317 3-120 (120)
372 TIGR00365 monothiol glutaredox 96.4 0.015 3.3E-07 40.9 6.4 63 89-159 3-73 (97)
373 PF13462 Thioredoxin_4: Thiore 96.3 0.073 1.6E-06 41.2 10.8 84 226-315 13-162 (162)
374 cd03027 GRX_DEP Glutaredoxin ( 96.3 0.016 3.4E-07 38.4 6.0 51 101-159 3-57 (73)
375 TIGR02189 GlrX-like_plant Glut 96.3 0.0078 1.7E-07 42.6 4.7 50 101-158 10-66 (99)
376 cd03019 DsbA_DsbA DsbA family, 96.3 0.043 9.3E-07 43.3 9.5 37 97-135 15-51 (178)
377 PF00837 T4_deiodinase: Iodoth 96.3 0.045 9.8E-07 44.7 9.2 61 76-138 77-141 (237)
378 TIGR00365 monothiol glutaredox 96.3 0.01 2.2E-07 41.8 5.0 65 219-296 5-77 (97)
379 PF11009 DUF2847: Protein of u 96.3 0.024 5.3E-07 40.1 6.7 90 217-309 8-104 (105)
380 cd03028 GRX_PICOT_like Glutare 96.2 0.0083 1.8E-07 41.6 4.1 63 221-296 3-73 (90)
381 cd02972 DsbA_family DsbA famil 96.2 0.022 4.8E-07 39.6 6.5 59 101-161 1-91 (98)
382 KOG3171|consensus 96.1 0.016 3.5E-07 45.9 5.8 100 83-186 140-251 (273)
383 KOG3170|consensus 96.1 0.069 1.5E-06 42.0 9.0 99 81-185 91-200 (240)
384 PRK10954 periplasmic protein d 96.0 0.071 1.5E-06 43.4 9.2 38 97-136 37-77 (207)
385 PRK10824 glutaredoxin-4; Provi 95.9 0.021 4.5E-07 41.4 5.2 63 89-159 6-76 (115)
386 cd03028 GRX_PICOT_like Glutare 95.9 0.028 6.1E-07 38.9 5.6 62 93-164 3-72 (90)
387 COG0695 GrxC Glutaredoxin and 95.8 0.021 4.5E-07 38.6 4.7 56 229-295 3-62 (80)
388 COG0695 GrxC Glutaredoxin and 95.7 0.014 3E-07 39.5 3.3 51 101-159 3-59 (80)
389 cd02972 DsbA_family DsbA famil 95.7 0.053 1.1E-06 37.6 6.5 61 229-292 1-91 (98)
390 PF02966 DIM1: Mitosis protein 95.7 0.53 1.2E-05 34.6 11.5 85 225-315 20-115 (133)
391 KOG3170|consensus 95.6 0.077 1.7E-06 41.7 7.4 100 209-317 91-201 (240)
392 PRK10638 glutaredoxin 3; Provi 95.5 0.029 6.2E-07 38.2 4.6 58 229-297 4-63 (83)
393 KOG1752|consensus 95.3 0.14 3.1E-06 36.3 7.5 63 90-159 6-73 (104)
394 PRK10638 glutaredoxin 3; Provi 95.3 0.041 8.9E-07 37.4 4.7 51 101-159 4-58 (83)
395 cd03068 PDI_b_ERp72 PDIb famil 95.3 0.22 4.7E-06 35.8 8.6 93 212-316 3-107 (107)
396 PF13743 Thioredoxin_5: Thiore 95.3 0.071 1.5E-06 42.1 6.6 27 103-129 2-28 (176)
397 PRK10824 glutaredoxin-4; Provi 95.2 0.029 6.3E-07 40.7 3.8 66 219-297 8-81 (115)
398 COG3634 AhpF Alkyl hydroperoxi 95.1 0.27 5.8E-06 42.6 9.7 135 31-184 60-196 (520)
399 PF00837 T4_deiodinase: Iodoth 95.0 0.26 5.6E-06 40.3 9.2 51 206-257 79-133 (237)
400 cd03068 PDI_b_ERp72 PDIb famil 95.0 0.37 8E-06 34.5 9.2 89 87-184 7-106 (107)
401 KOG1752|consensus 93.1 0.3 6.4E-06 34.7 5.3 66 220-296 8-77 (104)
402 COG3634 AhpF Alkyl hydroperoxi 92.4 5.2 0.00011 35.0 12.7 174 99-315 20-196 (520)
403 KOG2640|consensus 92.4 0.061 1.3E-06 45.4 1.2 85 99-187 78-163 (319)
404 cd02974 AhpF_NTD_N Alkyl hydro 92.4 2.7 5.8E-05 29.3 9.7 74 97-185 18-93 (94)
405 cd03071 PDI_b'_NRX PDIb' famil 92.3 1.3 2.7E-05 31.3 7.3 92 224-317 13-115 (116)
406 PRK12759 bifunctional gluaredo 92.3 0.24 5.2E-06 44.8 5.0 54 229-295 4-69 (410)
407 cd03023 DsbA_Com1_like DsbA fa 91.9 0.43 9.2E-06 36.3 5.5 28 226-253 6-33 (154)
408 COG3019 Predicted metal-bindin 91.9 4 8.7E-05 30.4 9.9 74 100-186 27-104 (149)
409 cd02978 KaiB_like KaiB-like fa 91.7 0.84 1.8E-05 29.9 5.6 61 101-162 4-64 (72)
410 PRK12759 bifunctional gluaredo 91.7 0.33 7.2E-06 43.9 5.1 51 101-159 4-66 (410)
411 TIGR02742 TrbC_Ftype type-F co 91.2 1.2 2.6E-05 33.0 6.8 43 273-315 60-113 (130)
412 KOG2640|consensus 90.1 0.16 3.6E-06 42.9 1.5 87 226-318 77-163 (319)
413 TIGR02742 TrbC_Ftype type-F co 89.7 1.6 3.4E-05 32.5 6.3 47 139-185 57-114 (130)
414 cd02978 KaiB_like KaiB-like fa 89.3 1.5 3.3E-05 28.7 5.3 58 228-289 3-60 (72)
415 PF13743 Thioredoxin_5: Thiore 88.6 0.21 4.6E-06 39.4 1.2 40 19-58 135-174 (176)
416 cd03019 DsbA_DsbA DsbA family, 88.1 1 2.3E-05 35.3 4.9 30 224-253 14-43 (178)
417 KOG2507|consensus 87.3 7.1 0.00015 34.8 9.6 90 96-187 17-112 (506)
418 TIGR02654 circ_KaiB circadian 86.5 3.3 7.2E-05 28.2 5.7 73 100-174 5-77 (87)
419 cd03040 GST_N_mPGES2 GST_N fam 86.0 6.3 0.00014 25.8 7.1 75 101-186 2-76 (77)
420 COG1999 Uncharacterized protei 85.9 15 0.00032 29.8 10.5 92 96-187 66-205 (207)
421 KOG2507|consensus 84.8 7.5 0.00016 34.7 8.5 90 225-316 18-110 (506)
422 COG0278 Glutaredoxin-related p 84.8 2 4.4E-05 29.9 4.1 68 219-296 8-81 (105)
423 cd02977 ArsC_family Arsenate R 84.8 0.72 1.6E-05 32.8 2.1 78 230-316 2-86 (105)
424 KOG2792|consensus 84.7 7 0.00015 32.5 7.8 89 99-187 141-276 (280)
425 PRK09301 circadian clock prote 84.4 4.4 9.6E-05 28.5 5.7 73 100-174 8-80 (103)
426 PF09673 TrbC_Ftype: Type-F co 83.4 4.5 9.8E-05 29.3 5.8 24 139-162 57-80 (113)
427 cd03041 GST_N_2GST_N GST_N fam 83.2 4.7 0.0001 26.6 5.5 73 101-185 2-76 (77)
428 cd03031 GRX_GRX_like Glutaredo 83.0 3.3 7.2E-05 31.5 5.1 51 101-159 2-66 (147)
429 cd03037 GST_N_GRX2 GST_N famil 82.9 6.5 0.00014 25.3 6.0 68 103-183 3-70 (71)
430 cd03040 GST_N_mPGES2 GST_N fam 82.9 8.4 0.00018 25.2 6.7 75 229-317 2-76 (77)
431 cd02974 AhpF_NTD_N Alkyl hydro 82.4 14 0.00031 25.7 8.8 73 226-316 20-93 (94)
432 cd03031 GRX_GRX_like Glutaredo 82.1 2.3 4.9E-05 32.4 3.9 56 229-295 2-69 (147)
433 cd03013 PRX5_like Peroxiredoxi 82.1 3.3 7.2E-05 31.8 5.0 55 96-151 28-88 (155)
434 COG1651 DsbG Protein-disulfide 81.9 15 0.00032 30.5 9.3 38 143-185 205-242 (244)
435 PRK10954 periplasmic protein d 81.9 2.6 5.7E-05 34.2 4.5 32 225-257 37-71 (207)
436 PF09673 TrbC_Ftype: Type-F co 81.4 6.7 0.00015 28.4 6.0 21 273-293 60-80 (113)
437 COG1225 Bcp Peroxiredoxin [Pos 80.1 25 0.00054 27.1 10.3 90 225-316 30-155 (157)
438 COG1225 Bcp Peroxiredoxin [Pos 80.0 6.1 0.00013 30.4 5.6 55 97-152 30-88 (157)
439 cd03071 PDI_b'_NRX PDIb' famil 79.4 20 0.00043 25.5 8.4 93 94-186 11-115 (116)
440 TIGR02654 circ_KaiB circadian 79.1 6.6 0.00014 26.8 4.9 58 229-290 6-63 (87)
441 PF07689 KaiB: KaiB domain; I 79.0 1.5 3.2E-05 29.6 1.8 56 103-159 2-57 (82)
442 cd03013 PRX5_like Peroxiredoxi 78.4 6.2 0.00014 30.3 5.4 45 224-270 28-75 (155)
443 cd03041 GST_N_2GST_N GST_N fam 78.0 14 0.00029 24.3 6.4 72 230-316 3-76 (77)
444 COG1331 Highly conserved prote 77.7 14 0.00031 35.3 8.3 82 83-166 28-122 (667)
445 cd03060 GST_N_Omega_like GST_N 77.4 8 0.00017 24.9 5.0 52 230-289 2-53 (71)
446 COG4545 Glutaredoxin-related p 77.3 4.6 0.0001 26.4 3.6 58 230-297 5-76 (85)
447 PRK09301 circadian clock prote 77.3 7.8 0.00017 27.3 5.0 72 228-304 8-79 (103)
448 cd03035 ArsC_Yffb Arsenate Red 76.1 2.4 5.1E-05 30.3 2.3 21 230-250 2-22 (105)
449 COG3019 Predicted metal-bindin 76.0 27 0.00059 26.1 7.7 74 227-316 26-103 (149)
450 cd03059 GST_N_SspA GST_N famil 75.7 18 0.00039 23.1 6.6 69 102-184 2-71 (73)
451 COG2761 FrnE Predicted dithiol 75.3 8 0.00017 31.7 5.3 43 143-189 174-216 (225)
452 COG3531 Predicted protein-disu 74.8 5.5 0.00012 31.6 4.1 44 274-317 164-209 (212)
453 cd03060 GST_N_Omega_like GST_N 73.7 11 0.00025 24.2 5.0 51 102-158 2-53 (71)
454 PF07689 KaiB: KaiB domain; I 73.5 2 4.3E-05 29.0 1.3 54 232-289 3-56 (82)
455 PF13778 DUF4174: Domain of un 73.1 33 0.00072 24.9 9.8 87 98-185 10-111 (118)
456 COG3531 Predicted protein-disu 72.9 7.2 0.00016 31.0 4.3 44 143-186 164-209 (212)
457 PF13778 DUF4174: Domain of un 71.5 36 0.00079 24.7 9.1 42 275-316 68-111 (118)
458 PHA03075 glutaredoxin-like pro 71.4 7.7 0.00017 27.9 3.8 28 226-253 2-29 (123)
459 PF01323 DSBA: DSBA-like thior 71.0 7.7 0.00017 30.7 4.5 39 141-183 155-193 (193)
460 COG1331 Highly conserved prote 70.6 12 0.00026 35.8 6.0 76 217-297 34-122 (667)
461 PRK13730 conjugal transfer pil 70.6 23 0.0005 28.4 6.7 42 273-315 151-192 (212)
462 PF01323 DSBA: DSBA-like thior 70.4 6.5 0.00014 31.1 3.9 38 101-139 2-39 (193)
463 cd02990 UAS_FAF1 UAS family, F 70.4 43 0.00093 25.1 10.3 89 96-186 20-133 (136)
464 KOG1364|consensus 70.2 9 0.0002 33.3 4.7 59 131-189 132-192 (356)
465 cd00570 GST_N_family Glutathio 70.0 13 0.00028 23.1 4.7 53 231-290 3-55 (71)
466 COG2761 FrnE Predicted dithiol 68.4 10 0.00022 31.0 4.5 43 275-321 175-217 (225)
467 PF13417 GST_N_3: Glutathione 67.8 31 0.00066 22.4 8.6 71 103-187 1-72 (75)
468 PHA03075 glutaredoxin-like pro 67.4 8.1 0.00017 27.8 3.2 29 98-126 2-30 (123)
469 cd03036 ArsC_like Arsenate Red 67.2 5 0.00011 28.9 2.3 78 230-316 2-87 (111)
470 COG4545 Glutaredoxin-related p 67.1 4.9 0.00011 26.3 2.0 22 102-123 5-26 (85)
471 PF02630 SCO1-SenC: SCO1/SenC; 67.1 23 0.0005 27.8 6.3 48 223-270 50-98 (174)
472 cd00570 GST_N_family Glutathio 66.4 12 0.00026 23.2 4.0 52 102-159 2-55 (71)
473 PRK01655 spxA transcriptional 66.3 6.4 0.00014 29.3 2.8 22 229-250 2-23 (131)
474 cd02977 ArsC_family Arsenate R 66.2 6.4 0.00014 27.9 2.7 31 102-140 2-32 (105)
475 cd03035 ArsC_Yffb Arsenate Red 64.7 7.3 0.00016 27.7 2.7 20 102-121 2-21 (105)
476 TIGR01617 arsC_related transcr 64.6 12 0.00026 27.2 3.9 33 102-142 2-34 (117)
477 cd03051 GST_N_GTT2_like GST_N 64.1 12 0.00026 24.0 3.6 52 102-159 2-57 (74)
478 PRK12559 transcriptional regul 62.6 8.3 0.00018 28.7 2.8 22 229-250 2-23 (131)
479 COG0278 Glutaredoxin-related p 62.5 36 0.00078 23.9 5.6 68 89-164 6-80 (105)
480 PRK13730 conjugal transfer pil 60.8 16 0.00034 29.3 4.1 43 141-184 150-192 (212)
481 TIGR01617 arsC_related transcr 60.7 7.5 0.00016 28.2 2.3 32 230-270 2-33 (117)
482 PRK00366 ispG 4-hydroxy-3-meth 58.5 52 0.0011 29.0 7.2 84 233-316 270-356 (360)
483 PF04134 DUF393: Protein of un 58.3 21 0.00046 25.5 4.3 63 104-172 2-67 (114)
484 cd03032 ArsC_Spx Arsenate Redu 58.0 11 0.00025 27.2 2.8 22 229-250 2-23 (115)
485 PRK01655 spxA transcriptional 57.7 14 0.0003 27.5 3.2 21 101-121 2-22 (131)
486 PF04592 SelP_N: Selenoprotein 57.3 30 0.00066 28.5 5.3 46 225-270 26-72 (238)
487 cd03036 ArsC_like Arsenate Red 56.7 12 0.00027 26.8 2.8 32 102-141 2-33 (111)
488 PRK13344 spxA transcriptional 52.8 15 0.00032 27.4 2.7 21 229-249 2-22 (132)
489 COG3411 Ferredoxin [Energy pro 52.7 28 0.0006 22.1 3.4 31 284-318 16-46 (64)
490 cd03045 GST_N_Delta_Epsilon GS 52.4 19 0.0004 23.2 3.0 51 102-158 2-56 (74)
491 PF09695 YtfJ_HI0045: Bacteria 51.6 1.1E+02 0.0024 23.6 9.3 40 275-314 114-155 (160)
492 PRK12559 transcriptional regul 51.5 20 0.00043 26.7 3.2 21 101-121 2-22 (131)
493 PF04592 SelP_N: Selenoprotein 50.8 34 0.00073 28.2 4.6 44 97-140 26-71 (238)
494 cd03033 ArsC_15kD Arsenate Red 50.7 18 0.00039 26.1 2.8 21 229-249 2-22 (113)
495 cd03032 ArsC_Spx Arsenate Redu 50.4 22 0.00047 25.7 3.2 21 101-121 2-22 (115)
496 PF02630 SCO1-SenC: SCO1/SenC; 47.6 45 0.00097 26.2 4.9 43 96-138 51-95 (174)
497 cd03055 GST_N_Omega GST_N fami 47.0 64 0.0014 21.8 5.1 53 101-159 19-72 (89)
498 PF04134 DUF393: Protein of un 46.7 21 0.00047 25.5 2.8 58 231-295 1-61 (114)
499 COG1393 ArsC Arsenate reductas 45.0 24 0.00051 25.7 2.7 23 229-251 3-25 (117)
500 COG3011 Predicted thiol-disulf 44.3 1.3E+02 0.0027 22.7 6.4 67 225-298 6-74 (137)
No 1
>KOG0190|consensus
Probab=100.00 E-value=3.3e-40 Score=288.76 Aligned_cols=302 Identities=30% Similarity=0.516 Sum_probs=229.6
Q ss_pred CCCCceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCC-------------
Q psy14086 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPK------------- 71 (324)
Q Consensus 5 ~~~~~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~------------- 71 (324)
++++.|.+++|||+++.++|.+|+|++|||+++|++|. . ...|.|+|++++|+.|++++.+|+..
T Consensus 73 e~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~-~-~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~ 150 (493)
T KOG0190|consen 73 EEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNGR-S-AQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLS 150 (493)
T ss_pred ccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEecCC-c-ceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhcc
Confidence 45678999999999999999999999999999999776 3 68999999999999999999998543
Q ss_pred ---------------------------------------------CCCCCC---C-C----CCC---c-eEcChhhHHHH
Q psy14086 72 ---------------------------------------------EPSDKP---I-V----NEG---L-VELTEESFEKY 94 (324)
Q Consensus 72 ---------------------------------------------~~~~~~---~-~----~~~---~-~~l~~~~f~~~ 94 (324)
...... . . ... . ..++.+.+.++
T Consensus 151 ~~~~~vig~F~d~~~~~~~~~~~a~~l~~d~~F~~ts~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~F 230 (493)
T KOG0190|consen 151 KKDVVVIGFFKDLESLAESFFDAASKLRDDYKFAHTSDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKF 230 (493)
T ss_pred CCceEEEEEecccccchHHHHHHHHhccccceeeccCcHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHH
Confidence 000000 0 0 000 0 12223333333
Q ss_pred hc--------------------CC--CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCcc
Q psy14086 95 VS--------------------LG--NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIK 152 (324)
Q Consensus 95 ~~--------------------~~--~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~ 152 (324)
++ .. ..+.+|....|.......+.+.++|++|++ ++.|+.+|...+..+++.||+.
T Consensus 231 i~~~~~plv~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~--~l~Fi~~d~e~~~~~~~~~Gl~ 308 (493)
T KOG0190|consen 231 IQENSLPLVTEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFKG--KLRFILIDPESFARVLEFFGLE 308 (493)
T ss_pred HHHhcccccceecccccceeeccccccceeEEeccccccHHHHHHHHHHHHHhccc--ceEEEEEChHHhhHHHHhcCcc
Confidence 31 11 013444455676778899999999999999 8999999988888899999998
Q ss_pred --ccc-eEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccC--C
Q psy14086 153 --SYP-TLLWIES-GKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKS--G 226 (324)
Q Consensus 153 --~~P-~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~--~ 226 (324)
..| .+++... +..+..-.+..+.++|..|+.+++.|+.+.+..++. +|..+...+|..+.+++|++++.+ +
T Consensus 309 ~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~kSqp---iPe~~~~~pVkvvVgknfd~iv~de~K 385 (493)
T KOG0190|consen 309 EEQLPIRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPHLKSQP---IPEDNDRSPVKVVVGKNFDDIVLDEGK 385 (493)
T ss_pred cccCCeeEEeeccccccccCccccccHHHHHHHHHHHhcCccccccccCC---CCcccccCCeEEEeecCHHHHhhcccc
Confidence 456 2233222 233332234478889999999999999776654322 444444478999999999999954 5
Q ss_pred cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCe--eeeeecCCC
Q psy14086 227 TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGV--RTAEYNGSR 304 (324)
Q Consensus 227 ~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~--~~~~~~g~~ 304 (324)
.++|.||+|||+||+++.|+|++||.+ +.+..++.+++||++. |+ + ....++++|||++|+.|. .+..|.|.+
T Consensus 386 dVLvEfyAPWCgHCk~laP~~eeLAe~-~~~~~~vviAKmDaTa--Nd-~-~~~~~~~fPTI~~~pag~k~~pv~y~g~R 460 (493)
T KOG0190|consen 386 DVLVEFYAPWCGHCKALAPIYEELAEK-YKDDENVVIAKMDATA--ND-V-PSLKVDGFPTILFFPAGHKSNPVIYNGDR 460 (493)
T ss_pred ceEEEEcCcccchhhhhhhHHHHHHHH-hcCCCCcEEEEecccc--cc-C-ccccccccceEEEecCCCCCCCcccCCCc
Confidence 899999999999999999999999954 7777899999999999 44 2 456788899999999885 467899999
Q ss_pred CHHHHHHHHHhhcc
Q psy14086 305 DLEELYQFILKHKV 318 (324)
Q Consensus 305 ~~~~l~~fi~~~~~ 318 (324)
+.+++..||.+.-.
T Consensus 461 ~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 461 TLEDLKKFIKKSAT 474 (493)
T ss_pred chHHHHhhhccCCC
Confidence 99999999987654
No 2
>PTZ00102 disulphide isomerase; Provisional
Probab=100.00 E-value=2.1e-34 Score=264.85 Aligned_cols=298 Identities=25% Similarity=0.485 Sum_probs=231.9
Q ss_pred CCceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCC-----------
Q psy14086 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSD----------- 75 (324)
Q Consensus 7 ~~~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~----------- 75 (324)
..+|.++.|||++++++|++|+|.++||+++|++|+ ...|.|.++.++|++|+.+..++.......
T Consensus 82 ~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~---~~~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~ 158 (477)
T PTZ00102 82 KSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGN---PVNYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKI 158 (477)
T ss_pred CCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCc---eEEecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccC
Confidence 457999999999999999999999999999999766 349999999999999999988763320000
Q ss_pred ---------------------------------------CC------CC-----------------------CCCceEcC
Q psy14086 76 ---------------------------------------KP------IV-----------------------NEGLVELT 87 (324)
Q Consensus 76 ---------------------------------------~~------~~-----------------------~~~~~~l~ 87 (324)
.. .. ...+..++
T Consensus 159 ~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fI~~~~~P~~~~~~ 238 (477)
T PTZ00102 159 FVAFYGEYTSKDSELYKKFEEVADKHREHAKFFVKKHEGKNKIYVLHKDEEGVELFMGKTKEELEEFVSTESFPLFAEIN 238 (477)
T ss_pred cEEEEEEeccCCcHHHHHHHHHHHhccccceEEEEcCCCCCcEEEEecCCCCcccCCCCCHHHHHHHHHHcCCCceeecC
Confidence 00 00 01134455
Q ss_pred hhhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh-hhhhCCccccceEEEEeCCeEe
Q psy14086 88 EESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS-ICQSFDIKSYPTLLWIESGKKL 166 (324)
Q Consensus 88 ~~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~-~~~~~~i~~~P~~~~~~~g~~~ 166 (324)
.+++..+...+..++.|. ..+.....+.+.++++|+++++ ++.|+.+|++.... +++.+|+..+|++++...+..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~--~~~f~~vd~~~~~~~~~~~~gi~~~P~~~i~~~~~~y 315 (477)
T PTZ00102 239 AENYRRYISSGKDLVWFC-GTTEDYDKYKSVVRKVARKLRE--KYAFVWLDTEQFGSHAKEHLLIEEFPGLAYQSPAGRY 315 (477)
T ss_pred ccchHHHhcCCccEEEEe-cCHHHHHHHHHHHHHHHHhccC--ceEEEEEechhcchhHHHhcCcccCceEEEEcCCccc
Confidence 556655555554444333 3456667789999999999998 89999999998886 8999999999998887643322
Q ss_pred eeecCC----CCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecccccccccc--CCcEEEEEeCCCChhh
Q psy14086 167 DKFQGS----RTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIK--SGTVFIKFFAPWCGHC 240 (324)
Q Consensus 167 ~~~~g~----~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~~~~~v~f~~~~c~~C 240 (324)
.+.+. .+.+.|.+|++++..++.+....+.+ .+......+..+++++|++.+. +++++|.||++||++|
T Consensus 316 -~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~----~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C 390 (477)
T PTZ00102 316 -LLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEP----IPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHC 390 (477)
T ss_pred -CCCccccccCCHHHHHHHHHHHhCCCCCcccccCC----CCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHH
Confidence 23332 68999999999999987654432211 1222356799999999998853 3589999999999999
Q ss_pred hhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeee-eeecCCCCHHHHHHHHHhhcc
Q psy14086 241 KRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRT-AEYNGSRDLEELYQFILKHKV 318 (324)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~-~~~~g~~~~~~l~~fi~~~~~ 318 (324)
+.+.|.|+++|.. +.....+.++.+|++. ++..++.++++++||+++|++|++. ..|.|.++.+.|.+||.++..
T Consensus 391 ~~~~p~~~~~a~~-~~~~~~v~~~~id~~~--~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 391 KNLEPVYNELGEK-YKDNDSIIVAKMNGTA--NETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred HHHHHHHHHHHHH-hccCCcEEEEEEECCC--CccchhcCCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCC
Confidence 9999999999955 5444569999999998 7888899999999999999987654 579999999999999999876
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=100.00 E-value=2.8e-31 Score=243.50 Aligned_cols=301 Identities=29% Similarity=0.483 Sum_probs=228.8
Q ss_pred CCceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCC---------------
Q psy14086 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPK--------------- 71 (324)
Q Consensus 7 ~~~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~--------------- 71 (324)
.+.|.++.|||++++++|++|+|.++||+++|++|+ .....|.|.++.++|.+|+.+.+++...
T Consensus 51 ~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~-~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~ 129 (462)
T TIGR01130 51 GPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGE-DSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADD 129 (462)
T ss_pred CCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCc-cceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcC
Confidence 356999999999999999999999999999999766 2257899999999999999988765321
Q ss_pred --------CC---------------------------C---------CCCC----------C------------------
Q psy14086 72 --------EP---------------------------S---------DKPI----------V------------------ 79 (324)
Q Consensus 72 --------~~---------------------------~---------~~~~----------~------------------ 79 (324)
.. . .... .
T Consensus 130 ~~~vi~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 209 (462)
T TIGR01130 130 DVVVIGFFKDLDSELNDTFLSVAEKLRDVYFFFAHSSDVAAFAKLGAFPDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEK 209 (462)
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHHhhhccceEEecCCHHHHhhcCCCCCcEEEecccccccccccccCcccCCHHHHHH
Confidence 00 0 0000 0
Q ss_pred ------CCCceEcChhhHHHHhcCCCEEEEEe--CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCc
Q psy14086 80 ------NEGLVELTEESFEKYVSLGNHFVKFY--APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDI 151 (324)
Q Consensus 80 ------~~~~~~l~~~~f~~~~~~~~~~v~f~--~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i 151 (324)
...+..++..++......++.++.|+ .....+|+.+...|+++|+++++ ..+.|+.+|+.....+++.+|+
T Consensus 210 fi~~~~~p~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~i~f~~~d~~~~~~~~~~~~~ 288 (462)
T TIGR01130 210 FIRAESLPLVGEFTQETAAKYFESGPLVVLYYNVDESLDPFEELRNRFLEAAKKFRG-KFVNFAVADEEDFGRELEYFGL 288 (462)
T ss_pred HHHHcCCCceEeeCCcchhhHhCCCCceeEEEEecCCchHHHHHHHHHHHHHHHCCC-CeEEEEEecHHHhHHHHHHcCC
Confidence 00123333334444444444443333 34556689999999999999985 3799999999999999999999
Q ss_pred c--ccceEEEEeCCe-EeeeecC-CCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecccccccccc--C
Q psy14086 152 K--SYPTLLWIESGK-KLDKFQG-SRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIK--S 225 (324)
Q Consensus 152 ~--~~P~~~~~~~g~-~~~~~~g-~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~ 225 (324)
. .+|+++++.... ....+.+ ..+.++|.+|+++.++|..+....+. ..+...+..+..+++++|.+.+. +
T Consensus 289 ~~~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se----~~p~~~~~~v~~l~~~~f~~~v~~~~ 364 (462)
T TIGR01130 289 KAEKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSE----PIPEDDEGPVKVLVGKNFDEIVLDET 364 (462)
T ss_pred CccCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccC----CCCccCCCccEEeeCcCHHHHhccCC
Confidence 8 699999997643 2333444 78999999999999998865443221 11222456799999999999874 3
Q ss_pred CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcC-CCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCee--eeeecC
Q psy14086 226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDN-KHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVR--TAEYNG 302 (324)
Q Consensus 226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~-~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~--~~~~~g 302 (324)
++++|.||++||++|+.+.|.+++++.. +.. ..++.|+.+|++. + ++.. +++.++|++++|++|.. ...|.|
T Consensus 365 ~~vlv~f~a~wC~~C~~~~p~~~~~~~~-~~~~~~~i~~~~id~~~--n-~~~~-~~i~~~Pt~~~~~~~~~~~~~~~~g 439 (462)
T TIGR01130 365 KDVLVEFYAPWCGHCKNLAPIYEELAEK-YKDAESDVVIAKMDATA--N-DVPP-FEVEGFPTIKFVPAGKKSEPVPYDG 439 (462)
T ss_pred CeEEEEEECCCCHhHHHHHHHHHHHHHH-hhcCCCcEEEEEEECCC--C-ccCC-CCccccCEEEEEeCCCCcCceEecC
Confidence 5899999999999999999999999966 444 3369999999988 4 3444 99999999999998865 357899
Q ss_pred CCCHHHHHHHHHhhcc
Q psy14086 303 SRDLEELYQFILKHKV 318 (324)
Q Consensus 303 ~~~~~~l~~fi~~~~~ 318 (324)
..+.+.|.+||.++..
T Consensus 440 ~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 440 DRTLEDFSKFIAKHAT 455 (462)
T ss_pred cCCHHHHHHHHHhcCC
Confidence 9999999999998864
No 4
>KOG0191|consensus
Probab=99.97 E-value=2.8e-29 Score=223.09 Aligned_cols=291 Identities=32% Similarity=0.658 Sum_probs=222.1
Q ss_pred ceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCC-CceEcC
Q psy14086 9 RVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNE-GLVELT 87 (324)
Q Consensus 9 ~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 87 (324)
.+.++.|||++++.+|++|+|++|||+++|..+ ...+.|.|.++++.+..|+...+.+.. ..... .+..++
T Consensus 79 ~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~l~ 150 (383)
T KOG0191|consen 79 KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG--KKPIDYSGPRNAESLAEFLIKELEPSV------KKLVEGEVFELT 150 (383)
T ss_pred ceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC--CceeeccCcccHHHHHHHHHHhhcccc------ccccCCceEEcc
Confidence 789999999999999999999999999999966 468999999999999999998886511 12222 489999
Q ss_pred hhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeE
Q psy14086 88 EESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKK 165 (324)
Q Consensus 88 ~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~ 165 (324)
..+|...+ .+..++|.||+|||++|+.+.|.|.+++..++....+.++.+||+....++.+++|+.+|++.+|++|..
T Consensus 151 ~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~ 230 (383)
T KOG0191|consen 151 KDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEE 230 (383)
T ss_pred ccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCc
Confidence 99999876 4457899999999999999999999999999755589999999998899999999999999999999877
Q ss_pred -eeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccCCcEEEEEeCCCChhhhhhh
Q psy14086 166 -LDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLA 244 (324)
Q Consensus 166 -~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~v~f~~~~c~~C~~~~ 244 (324)
...|.|.++.+.|..|++............... .........+.+. ...++........++.|+++||++|....
T Consensus 231 ~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (383)
T KOG0191|consen 231 DIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEI---EDKDTFSPTFLDT-AEFLDSLEKKKNKFVKFYAPWCGHCGGFA 306 (383)
T ss_pred ccccccccccHHHHHHHHHhhcCCCCCCcccccc---cCccccccchhhh-hhhhhhhHHhhhhHhhhhcchhhcccccc
Confidence 666788999999999999988753110000000 0000000111111 11122222234689999999999999999
Q ss_pred HhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCC-HHHHHHHH
Q psy14086 245 PTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRD-LEELYQFI 313 (324)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~-~~~l~~fi 313 (324)
|.+...+.........+.+..+++.. ...++....++.+|++.++..|.......|.+. .+.+..+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 374 (383)
T KOG0191|consen 307 PVYEDKAELGYPDLSKIKAAKLDCAL--LKSLCQKAIVRGYPTIKLYNYGKNPSNIVGLILGIQALDSRD 374 (383)
T ss_pred hhHHHHHhccccccccceeecccccc--ccchhhHhhhhcCceeEeeccccccccccCceeehhhhhhhc
Confidence 99999985523344568999999988 666888999999999999988766544555432 34443333
No 5
>KOG0191|consensus
Probab=99.97 E-value=4.7e-29 Score=221.62 Aligned_cols=217 Identities=37% Similarity=0.785 Sum_probs=185.8
Q ss_pred eEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEe
Q psy14086 84 VELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161 (324)
Q Consensus 84 ~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~ 161 (324)
..++...|.... ..+.++|.||+|||++|+.+.|+|.++++.+++ .+.++.|||+.+..+|+.|+|+++|++.+|.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~--~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~ 109 (383)
T KOG0191|consen 32 SELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG--KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFR 109 (383)
T ss_pred hhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcC--ceEEEEeCchhhHHHHHhcCCccCcEEEEEc
Confidence 333344444444 456899999999999999999999999999998 8999999999999999999999999999999
Q ss_pred CCeEeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCC-CeeEeccccccccccC--CcEEEEEeCCCCh
Q psy14086 162 SGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPE-PVVSLTSENFNDVIKS--GTVFIKFFAPWCG 238 (324)
Q Consensus 162 ~g~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~~~--~~~~v~f~~~~c~ 238 (324)
+|.....|.|..+.+.+.+|+...+....... .. .+..++..++...+.. .+++|.||+|||+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~ 175 (383)
T KOG0191|consen 110 PGKKPIDYSGPRNAESLAEFLIKELEPSVKKL--------------VEGEVFELTKDNFDETVKDSDADWLVEFYAPWCG 175 (383)
T ss_pred CCCceeeccCcccHHHHHHHHHHhhccccccc--------------cCCceEEccccchhhhhhccCcceEEEEeccccH
Confidence 99666679999999999999999888542211 13 4888999999887744 5799999999999
Q ss_pred hhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCee-eeeecCCCCHHHHHHHHHhhc
Q psy14086 239 HCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVR-TAEYNGSRDLEELYQFILKHK 317 (324)
Q Consensus 239 ~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~-~~~~~g~~~~~~l~~fi~~~~ 317 (324)
+|+.+.|.|++++.. +.....+.++.+|++. ...++..++|.++|++.+|+.|.. ...|.|.++.+.+.+|+.+..
T Consensus 176 ~ck~l~~~~~~~a~~-~~~~~~v~~~~~d~~~--~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~ 252 (383)
T KOG0191|consen 176 HCKKLAPEWEKLAKL-LKSKENVELGKIDATV--HKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKE 252 (383)
T ss_pred HhhhcChHHHHHHHH-hccCcceEEEeeccch--HHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhc
Confidence 999999999999965 5445589999999997 789999999999999999998877 667889999999999999876
Q ss_pred cc
Q psy14086 318 VE 319 (324)
Q Consensus 318 ~~ 319 (324)
..
T Consensus 253 ~~ 254 (383)
T KOG0191|consen 253 RR 254 (383)
T ss_pred CC
Confidence 54
No 6
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.96 E-value=8.8e-28 Score=196.52 Aligned_cols=199 Identities=17% Similarity=0.270 Sum_probs=158.9
Q ss_pred hhhHHHHhcCCCEEEEEeC---CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCe
Q psy14086 88 EESFEKYVSLGNHFVKFYA---PWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGK 164 (324)
Q Consensus 88 ~~~f~~~~~~~~~~v~f~~---~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~ 164 (324)
.+.|.+.++++..++.|++ +||++|+.+.|.+++++..+.. -.+.++.+|.++++.++++|+|.++||+++|++|+
T Consensus 10 ~~~~~~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~-~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~ 88 (215)
T TIGR02187 10 KELFLKELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK-LKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGK 88 (215)
T ss_pred HHHHHHhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC-ceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCe
Confidence 4455565666666888988 9999999999999999999843 24668888888999999999999999999999998
Q ss_pred Ee-eeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecccccccc--ccCCcEEEEEeCCCChhhh
Q psy14086 165 KL-DKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDV--IKSGTVFIKFFAPWCGHCK 241 (324)
Q Consensus 165 ~~-~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~--~~~~~~~v~f~~~~c~~C~ 241 (324)
.. .++.|..+.+++.+||+..++-. .....++.++.+.+ ..+...++.||++||++|+
T Consensus 89 ~~~~~~~G~~~~~~l~~~i~~~~~~~-------------------~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~ 149 (215)
T TIGR02187 89 DGGIRYTGIPAGYEFAALIEDIVRVS-------------------QGEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCP 149 (215)
T ss_pred eeEEEEeecCCHHHHHHHHHHHHHhc-------------------CCCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcH
Confidence 86 48999999999999999886421 01122333332222 2233466679999999999
Q ss_pred hhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHh
Q psy14086 242 RLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILK 315 (324)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~ 315 (324)
.+.+.+++++.+ . ..+.+..+|.+. +++++.+++|.++||++++++|.. +.|..+.++|.+||.+
T Consensus 150 ~~~~~l~~l~~~-~---~~i~~~~vD~~~--~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 150 YAVLMAHKFALA-N---DKILGEMIEANE--NPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQFLEYILS 214 (215)
T ss_pred HHHHHHHHHHHh-c---CceEEEEEeCCC--CHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHHHHHHHh
Confidence 999999999844 2 268899999998 899999999999999999987753 7898899999999875
No 7
>KOG0190|consensus
Probab=99.88 E-value=1e-21 Score=172.84 Aligned_cols=206 Identities=27% Similarity=0.533 Sum_probs=159.5
Q ss_pred CCCCCceEcChhhHHHHhcCCC-EEEEEeCCCCHhHhhHHHHHHHHHHhcCCC-CCeEEEEeccccchhhhhhCCccccc
Q psy14086 78 IVNEGLVELTEESFEKYVSLGN-HFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCTQHRSICQSFDIKSYP 155 (324)
Q Consensus 78 ~~~~~~~~l~~~~f~~~~~~~~-~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~~~~~~~~~~~i~~~P 155 (324)
...+.+..|+.++|...+.... ++|.||||||++|+.++|++.++|..+... ..+..++|||+++..+|.+|+|++||
T Consensus 22 ~~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 22 KAEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred CcccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 3456899999999999997775 579999999999999999999999999875 57999999999999999999999999
Q ss_pred eEEEEeCCeEeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEec-cccccccccCC-cEEEEEe
Q psy14086 156 TLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLT-SENFNDVIKSG-TVFIKFF 233 (324)
Q Consensus 156 ~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~-~~~~~~~~~~~-~~~v~f~ 233 (324)
|+.+|++|.....|.|+++++.|+.|+.+..+ +++..|. .+.+..++.++ .++|.|+
T Consensus 102 TlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~g---------------------Pa~~~l~~~~~a~~~l~~~~~~vig~F 160 (493)
T KOG0190|consen 102 TLKIFRNGRSAQDYNGPREADGIVKWLKKQSG---------------------PASKTLKTVDEAEEFLSKKDVVVIGFF 160 (493)
T ss_pred eEEEEecCCcceeccCcccHHHHHHHHHhccC---------------------CCceecccHHHHHhhccCCceEEEEEe
Confidence 99999999876779999999999999999887 3445555 34466666554 5666676
Q ss_pred CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCC--ccceEEEEecC-eeeeeecCCCCHHHHH
Q psy14086 234 APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD--GFPSIYVYKNG-VRTAEYNGSRDLEELY 310 (324)
Q Consensus 234 ~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~--~~P~l~~~~~g-~~~~~~~g~~~~~~l~ 310 (324)
...-+. . ..+..+|..+. . .+.|+. +. +.++..++++. +.|-+++++.. .....|.|..+.+.|.
T Consensus 161 ~d~~~~---~-~~~~~~a~~l~-~--d~~F~~---ts--~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~ 228 (493)
T KOG0190|consen 161 KDLESL---A-ESFFDAASKLR-D--DYKFAH---TS--DSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLK 228 (493)
T ss_pred cccccc---h-HHHHHHHHhcc-c--cceeec---cC--cHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHH
Confidence 643221 1 33344443533 3 578873 33 57778888774 35557777654 3344568899999999
Q ss_pred HHHHhh
Q psy14086 311 QFILKH 316 (324)
Q Consensus 311 ~fi~~~ 316 (324)
+||..+
T Consensus 229 ~Fi~~~ 234 (493)
T KOG0190|consen 229 KFIQEN 234 (493)
T ss_pred HHHHHh
Confidence 999865
No 8
>PTZ00102 disulphide isomerase; Provisional
Probab=99.87 E-value=8.1e-21 Score=174.87 Aligned_cols=178 Identities=21% Similarity=0.441 Sum_probs=146.8
Q ss_pred CCceEEEEeeCccchh-hhccCCCccCCceEEEecCCcccccccCCC----CChHHHHHHHHhhhcCCCC----CCCCCC
Q psy14086 7 DSRVTIGQVDCTVEKQ-LCADQEITGYPTLKFFKKGSESEASKFRGT----RDLPTLTNFINEQISETPK----EPSDKP 77 (324)
Q Consensus 7 ~~~i~~~~vd~~~~~~-l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~----~~~~~i~~~~~~~~~~~~~----~~~~~~ 77 (324)
...+.|+.+|+.+... +++.+|+..+|++.+...++ ...+.+. .+.++|.+|+.+...+... ..+.+.
T Consensus 277 ~~~~~f~~vd~~~~~~~~~~~~gi~~~P~~~i~~~~~---~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~ 353 (477)
T PTZ00102 277 REKYAFVWLDTEQFGSHAKEHLLIEEFPGLAYQSPAG---RYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPE 353 (477)
T ss_pred cCceEEEEEechhcchhHHHhcCcccCceEEEEcCCc---ccCCCccccccCCHHHHHHHHHHHhCCCCCcccccCCCCC
Confidence 3568999999999886 99999999999998887444 3344443 6899999999987764221 111122
Q ss_pred CCCCCceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccc
Q psy14086 78 IVNEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYP 155 (324)
Q Consensus 78 ~~~~~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P 155 (324)
.....+..++.++|++.+ .+++++|.||++||++|+.+.|.|++++..+++...+.++.+|++.+...++.++++++|
T Consensus 354 ~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~P 433 (477)
T PTZ00102 354 EQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFP 433 (477)
T ss_pred CCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccC
Confidence 235578999999999885 345799999999999999999999999999986557999999999999999999999999
Q ss_pred eEEEEeCCeEe-eeecCCCCHHHHHHHHHhhhC
Q psy14086 156 TLLWIESGKKL-DKFQGSRTLETLVNYVSKMKG 187 (324)
Q Consensus 156 ~~~~~~~g~~~-~~~~g~~~~~~i~~fi~~~~~ 187 (324)
++++|++|+.. .+|.|.++.++|.+||.+...
T Consensus 434 t~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 434 TILFVKAGERTPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred eEEEEECCCcceeEecCcCCHHHHHHHHHHcCC
Confidence 99999987654 579999999999999999876
No 9
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.87 E-value=1.9e-21 Score=140.97 Aligned_cols=100 Identities=14% Similarity=0.327 Sum_probs=91.3
Q ss_pred CCceEcChhhHHHHh----cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhh-hhCCccccc
Q psy14086 81 EGLVELTEESFEKYV----SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSIC-QSFDIKSYP 155 (324)
Q Consensus 81 ~~~~~l~~~~f~~~~----~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~-~~~~i~~~P 155 (324)
+.+.+|++++|++.+ .++.++|.||++||++|+.+.|.|+++++.+++ .+.|++|||+.+..+| ++|+|+++|
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~~~~Vd~d~~~~l~~~~~~I~~~P 86 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVLFVAINCWWPQGKCRKQKHFFYFP 86 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCChHHHHHhcCCcccC
Confidence 479999999999872 445789999999999999999999999999987 7999999999999999 589999999
Q ss_pred eEEEEeCCeEeeeecCCCCHHHHHHHH
Q psy14086 156 TLLWIESGKKLDKFQGSRTLETLVNYV 182 (324)
Q Consensus 156 ~~~~~~~g~~~~~~~g~~~~~~i~~fi 182 (324)
|+++|++|+...+|.|.++.+.|..|+
T Consensus 87 Tl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 87 VIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred EEEEEECCccceEEeCCCCHHHHHhhC
Confidence 999999998888899999999999874
No 10
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.86 E-value=5e-20 Score=169.09 Aligned_cols=233 Identities=23% Similarity=0.417 Sum_probs=170.3
Q ss_pred CceEcChhhHHHHhcCC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC-CCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086 82 GLVELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCTQHRSICQSFDIKSYPTLLW 159 (324)
Q Consensus 82 ~~~~l~~~~f~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~ 159 (324)
.+..++.++|.+.+.++ .++|.||++||++|+++.|.|.++++.+.+. .++.|+.|||+.+..+|++++|.++|++++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 57889999999988555 5799999999999999999999999988653 359999999999999999999999999999
Q ss_pred EeCCeE-eeeecCCCCHHHHHHHHHhhhCCCCCCCC--------------------CCcccc----------------C-
Q psy14086 160 IESGKK-LDKFQGSRTLETLVNYVSKMKGPLNKKAD--------------------SPDAEN----------------A- 201 (324)
Q Consensus 160 ~~~g~~-~~~~~g~~~~~~i~~fi~~~~~~~~~~~~--------------------~~~~~~----------------~- 201 (324)
|++|+. ...|.|.++.++|.+|+.+.+........ ...... .
T Consensus 82 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~~~~~~~~~ 161 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLRDVYFF 161 (462)
T ss_pred EeCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHHHhhhccce
Confidence 999887 67899999999999999988764311100 000000 0
Q ss_pred --------------CC-C-----------------C----------------CCCCCeeEeccccccccccCCcEEEEEe
Q psy14086 202 --------------SE-V-----------------P----------------VKPEPVVSLTSENFNDVIKSGTVFIKFF 233 (324)
Q Consensus 202 --------------~~-~-----------------~----------------~~~~~v~~l~~~~~~~~~~~~~~~v~f~ 233 (324)
.. . . ..-+.+..++..++......++.++.|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~~~~~l~~ 241 (462)
T TIGR01130 162 FAHSSDVAAFAKLGAFPDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESGPLVVLYY 241 (462)
T ss_pred EEecCCHHHHhhcCCCCCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCCCceeEEE
Confidence 00 0 0 0012233333344444444445444443
Q ss_pred --CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCC--ccceEEEEecCe-eeeeecC-CCCHH
Q psy14086 234 --APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD--GFPSIYVYKNGV-RTAEYNG-SRDLE 307 (324)
Q Consensus 234 --~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~--~~P~l~~~~~g~-~~~~~~g-~~~~~ 307 (324)
......|..+...++++|.+ +.+ ..+.|+.+|+.. ...++..+++. .+|+++++.... ....+.+ ..+.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~a~~-~~~-~~i~f~~~d~~~--~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~~~~~~~~ 317 (462)
T TIGR01130 242 NVDESLDPFEELRNRFLEAAKK-FRG-KFVNFAVADEED--FGRELEYFGLKAEKFPAVAIQDLEGNKKYPMDQEEFSSE 317 (462)
T ss_pred EecCCchHHHHHHHHHHHHHHH-CCC-CeEEEEEecHHH--hHHHHHHcCCCccCCceEEEEeCCcccccCCCcCCCCHH
Confidence 34445578899999999966 432 368999999988 78899999998 699999996432 3334555 68999
Q ss_pred HHHHHHHhhcc
Q psy14086 308 ELYQFILKHKV 318 (324)
Q Consensus 308 ~l~~fi~~~~~ 318 (324)
.|.+||++.++
T Consensus 318 ~i~~fi~~~~~ 328 (462)
T TIGR01130 318 NLEAFVKDFLD 328 (462)
T ss_pred HHHHHHHHHhc
Confidence 99999998764
No 11
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.86 E-value=4.4e-21 Score=139.09 Aligned_cols=103 Identities=18% Similarity=0.436 Sum_probs=90.4
Q ss_pred CCCCCeeEeccccccccc----cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhh-hhc
Q psy14086 206 VKPEPVVSLTSENFNDVI----KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLC-NQE 280 (324)
Q Consensus 206 ~~~~~v~~l~~~~~~~~~----~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~-~~~ 280 (324)
...+.|..+++++|++.+ .++.++|.||++||++|+.+.|.++++|.+ +.. .+.|+.+|++. +.+++ +++
T Consensus 6 ~~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~-~~~--~v~~~~Vd~d~--~~~l~~~~~ 80 (113)
T cd03006 6 SQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQK-LSD--QVLFVAINCWW--PQGKCRKQK 80 (113)
T ss_pred CCCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHH-hcC--CeEEEEEECCC--ChHHHHHhc
Confidence 344779999999999862 345799999999999999999999999966 544 59999999998 88888 589
Q ss_pred CCCccceEEEEecCeeeeeecCCCCHHHHHHHH
Q psy14086 281 GVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313 (324)
Q Consensus 281 ~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi 313 (324)
+|.++||+++|++|+....|.|.++.+.|..|+
T Consensus 81 ~I~~~PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 81 HFFYFPVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred CCcccCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 999999999999998888899999999999874
No 12
>KOG0910|consensus
Probab=99.86 E-value=4.3e-21 Score=141.35 Aligned_cols=104 Identities=29% Similarity=0.574 Sum_probs=97.2
Q ss_pred CceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086 82 GLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW 159 (324)
Q Consensus 82 ~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~ 159 (324)
.+..++..+|++.+ .+.|++|.|||+||+||+.+.|.+++++.++.+ ++.|+++|.+++..++.+|+|+++|++++
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g--~~k~~kvdtD~~~ela~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG--KFKLYKVDTDEHPELAEDYEISAVPTVLV 121 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC--eEEEEEEccccccchHhhcceeeeeEEEE
Confidence 56677889999888 445899999999999999999999999999988 89999999999999999999999999999
Q ss_pred EeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086 160 IESGKKLDKFQGSRTLETLVNYVSKMKG 187 (324)
Q Consensus 160 ~~~g~~~~~~~g~~~~~~i~~fi~~~~~ 187 (324)
|++|+...++.|..+.+.|.+||++++.
T Consensus 122 fknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 122 FKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 9999999999999999999999998864
No 13
>KOG4277|consensus
Probab=99.86 E-value=1.1e-20 Score=152.86 Aligned_cols=197 Identities=21% Similarity=0.500 Sum_probs=141.6
Q ss_pred CceEcChhhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC-CCeEEEEeccccchhhhhhCCccccceEEEE
Q psy14086 82 GLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160 (324)
Q Consensus 82 ~~~~l~~~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~ 160 (324)
.+.+| ++.|......+.|+|.||+|||++|+.+.|.|.++...++.- ..+.++++||+..+.++.+|||++||+|.+|
T Consensus 29 ~VeDL-ddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~ 107 (468)
T KOG4277|consen 29 AVEDL-DDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFF 107 (468)
T ss_pred hhhhh-hHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEe
Confidence 45555 455666667778999999999999999999999999988763 3699999999999999999999999999999
Q ss_pred eCCeEeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecccc--cccccc-CCcEEEEEeCCCC
Q psy14086 161 ESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSEN--FNDVIK-SGTVFIKFFAPWC 237 (324)
Q Consensus 161 ~~g~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~~~-~~~~~v~f~~~~c 237 (324)
+++-.+ .|.|+++.+.|.+|..+... ..+..++... +..+-. ..+.+|+|.+..-
T Consensus 108 kgd~a~-dYRG~R~Kd~iieFAhR~a~---------------------aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~ 165 (468)
T KOG4277|consen 108 KGDHAI-DYRGGREKDAIIEFAHRCAA---------------------AIIEPINENQIEFEHLQARHQPFFVFFGTGEG 165 (468)
T ss_pred cCCeee-ecCCCccHHHHHHHHHhccc---------------------ceeeecChhHHHHHHHhhccCceEEEEeCCCC
Confidence 877554 59999999999999998876 3344555433 333322 2477887775432
Q ss_pred hhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHh
Q psy14086 238 GHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILK 315 (324)
Q Consensus 238 ~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~ 315 (324)
+ +...+.++|.. .+.++..-..+ ..-....-..+..|++.+|++..-....+| +.++|.+||++
T Consensus 166 P----L~d~fidAASe------~~~~a~FfSas--eeVaPe~~~~kempaV~VFKDetf~i~de~--dd~dLseWinR 229 (468)
T KOG4277|consen 166 P----LFDAFIDAASE------KFSVARFFSAS--EEVAPEENDAKEMPAVAVFKDETFEIEDEG--DDEDLSEWINR 229 (468)
T ss_pred c----HHHHHHHHhhh------heeeeeeeccc--cccCCcccchhhccceEEEccceeEEEecC--chhHHHHHHhH
Confidence 2 44444555533 35555544332 122223445667999999998744433444 47889999975
No 14
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.85 E-value=9.8e-21 Score=136.32 Aligned_cols=99 Identities=35% Similarity=0.766 Sum_probs=91.4
Q ss_pred CceEcChhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEE
Q psy14086 82 GLVELTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160 (324)
Q Consensus 82 ~~~~l~~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~ 160 (324)
.+..++.++|++.+.+ ++++|.||++||++|+.+.|.|+++++.+++ .+.|+.+||++++.++++++|+++|++++|
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 79 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VIRIGAVNCGDDRMLCRSQGVNSYPSLYVF 79 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC--ceEEEEEeCCccHHHHHHcCCCccCEEEEE
Confidence 5778999999998855 4689999999999999999999999999987 799999999999999999999999999999
Q ss_pred eCCeEeeeecCCCCHHHHHHHH
Q psy14086 161 ESGKKLDKFQGSRTLETLVNYV 182 (324)
Q Consensus 161 ~~g~~~~~~~g~~~~~~i~~fi 182 (324)
++|+...+|.|.++.+.|.+|.
T Consensus 80 ~~g~~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 80 PSGMNPEKYYGDRSKESLVKFA 101 (101)
T ss_pred cCCCCcccCCCCCCHHHHHhhC
Confidence 9998888899999999998873
No 15
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.85 E-value=4.6e-20 Score=151.00 Aligned_cols=157 Identities=15% Similarity=0.264 Sum_probs=126.5
Q ss_pred eEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceEcChh
Q psy14086 10 VTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELTEE 89 (324)
Q Consensus 10 i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (324)
+.++.+|.+++++++++|+|.++||+.+|++|. ....+|.|..+.+.+.+|+...++-.. .-..++++
T Consensus 56 i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~-~~~~~~~G~~~~~~l~~~i~~~~~~~~-----------~~~~L~~~ 123 (215)
T TIGR02187 56 LEIYDFDTPEDKEEAEKYGVERVPTTIILEEGK-DGGIRYTGIPAGYEFAALIEDIVRVSQ-----------GEPGLSEK 123 (215)
T ss_pred EEEEecCCcccHHHHHHcCCCccCEEEEEeCCe-eeEEEEeecCCHHHHHHHHHHHHHhcC-----------CCCCCCHH
Confidence 556777777999999999999999999999665 323579999999999999988764200 12355555
Q ss_pred hHHHHh-cCCC-EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEee
Q psy14086 90 SFEKYV-SLGN-HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD 167 (324)
Q Consensus 90 ~f~~~~-~~~~-~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~ 167 (324)
..+.+. .+++ .++.||++||++|+.+.+.+++++.... ++.+..+|.+.++.++++|+|.++|+++++++|..
T Consensus 124 ~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~---~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~-- 198 (215)
T TIGR02187 124 TVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND---KILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE-- 198 (215)
T ss_pred HHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC---ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE--
Confidence 554443 2334 4677999999999999999999998843 69999999999999999999999999999877753
Q ss_pred eecCCCCHHHHHHHHHh
Q psy14086 168 KFQGSRTLETLVNYVSK 184 (324)
Q Consensus 168 ~~~g~~~~~~i~~fi~~ 184 (324)
+.|..+.++|.+|+.+
T Consensus 199 -~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 199 -FVGAYPEEQFLEYILS 214 (215)
T ss_pred -EECCCCHHHHHHHHHh
Confidence 8899999999999875
No 16
>KOG0910|consensus
Probab=99.84 E-value=1.3e-20 Score=138.72 Aligned_cols=105 Identities=28% Similarity=0.515 Sum_probs=93.2
Q ss_pred CCeeEecccccccccc--CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086 209 EPVVSLTSENFNDVIK--SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP 286 (324)
Q Consensus 209 ~~v~~l~~~~~~~~~~--~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P 286 (324)
..+..++..+|++.+- +.||+|.|||+||++|+.+.|.+++++.+ +.+ .+.++++|+++ +.+++.+|+|+.+|
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~-~~g--~~k~~kvdtD~--~~ela~~Y~I~avP 117 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSE-YAG--KFKLYKVDTDE--HPELAEDYEISAVP 117 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHh-hcC--eEEEEEEcccc--ccchHhhcceeeee
Confidence 3456667777887663 35899999999999999999999999977 454 79999999999 99999999999999
Q ss_pred eEEEEecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086 287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHKV 318 (324)
Q Consensus 287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~ 318 (324)
|+++|++|++...+.|..+.+.+.+||++.++
T Consensus 118 tvlvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 118 TVLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 99999999999899999999999999999864
No 17
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.84 E-value=3e-20 Score=134.58 Aligned_cols=99 Identities=31% Similarity=0.717 Sum_probs=90.5
Q ss_pred CceEcChhhHHHHhc--CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086 82 GLVELTEESFEKYVS--LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW 159 (324)
Q Consensus 82 ~~~~l~~~~f~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~ 159 (324)
.+.+++.++|++.+. +++++|.||++||++|+.+.|.|+++++++.+ .+.|+.+||++++.++++++|+++|++++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG--KVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 577899999999873 34789999999999999999999999999976 79999999999999999999999999999
Q ss_pred EeCC-eEeeeecCCCC-HHHHHHHH
Q psy14086 160 IESG-KKLDKFQGSRT-LETLVNYV 182 (324)
Q Consensus 160 ~~~g-~~~~~~~g~~~-~~~i~~fi 182 (324)
|++| +...+|.|..+ .++|.+||
T Consensus 80 ~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 80 YPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EcCCCCCceEccCCCCCHHHHHhhC
Confidence 9997 88889999987 99999885
No 18
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.84 E-value=7.5e-20 Score=132.36 Aligned_cols=101 Identities=35% Similarity=0.892 Sum_probs=94.9
Q ss_pred ceEcChhhHHHHhcC--CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEE
Q psy14086 83 LVELTEESFEKYVSL--GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160 (324)
Q Consensus 83 ~~~l~~~~f~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~ 160 (324)
|..+|.++|++.+.+ ++++|+||++||++|+.+.|.|.++++.+.+ ++.|+.+|+++++.++++|+|+++|+++++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEE
Confidence 467899999999954 6789999999999999999999999999987 899999999999999999999999999999
Q ss_pred eCCeEeeeecCCCCHHHHHHHHHhh
Q psy14086 161 ESGKKLDKFQGSRTLETLVNYVSKM 185 (324)
Q Consensus 161 ~~g~~~~~~~g~~~~~~i~~fi~~~ 185 (324)
++|+...+|.|..+.+.|.+||+++
T Consensus 79 ~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 KNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp ETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred ECCcEEEEEECCCCHHHHHHHHHcC
Confidence 9999999999999999999999864
No 19
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.83 E-value=8.9e-20 Score=133.05 Aligned_cols=104 Identities=10% Similarity=0.266 Sum_probs=93.1
Q ss_pred CCCceEcChhhHHHHhcCC--CEEEEEeCCCCHh--Hh--hHHHHHHHHHHhc--CCCCCeEEEEeccccchhhhhhCCc
Q psy14086 80 NEGLVELTEESFEKYVSLG--NHFVKFYAPWCGH--CQ--SLAPVWQELASHF--KTEEDVSIAKIDCTQHRSICQSFDI 151 (324)
Q Consensus 80 ~~~~~~l~~~~f~~~~~~~--~~~v~f~~~~c~~--c~--~~~~~~~~la~~~--~~~~~i~~~~vd~~~~~~~~~~~~i 151 (324)
...+..+|+++|++.+.+. ++++.||++||++ |+ .+.|.+.++|.++ .+ ++.|++||+++++.++++|||
T Consensus 8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~--~v~~~kVD~d~~~~La~~~~I 85 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK--GIGFGLVDSKKDAKVAKKLGL 85 (120)
T ss_pred CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC--CCEEEEEeCCCCHHHHHHcCC
Confidence 4578999999999988444 5688888899977 99 8889999999998 55 799999999999999999999
Q ss_pred cccceEEEEeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086 152 KSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK 186 (324)
Q Consensus 152 ~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~ 186 (324)
+++||+++|++|+.+. |.|.++.+.|.+||.+.+
T Consensus 86 ~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 86 DEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 9999999999999776 999999999999999764
No 20
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.83 E-value=7.4e-20 Score=133.38 Aligned_cols=101 Identities=32% Similarity=0.650 Sum_probs=89.8
Q ss_pred CceEcChhhHHHHhcCC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC----CCeEEEEeccccchhhhhhCCccccce
Q psy14086 82 GLVELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTE----EDVSIAKIDCTQHRSICQSFDIKSYPT 156 (324)
Q Consensus 82 ~~~~l~~~~f~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~----~~i~~~~vd~~~~~~~~~~~~i~~~P~ 156 (324)
++.+++.++|++.+..+ +++|.||++||++|+++.|.|+++++.+++. .++.|+.+||+.+..++++|+|+++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt 81 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence 57889999999988554 5799999999999999999999999987432 259999999999999999999999999
Q ss_pred EEEEeCCe-EeeeecCCCCHHHHHHHH
Q psy14086 157 LLWIESGK-KLDKFQGSRTLETLVNYV 182 (324)
Q Consensus 157 ~~~~~~g~-~~~~~~g~~~~~~i~~fi 182 (324)
+++|++|+ ....|.|.++.++|.+||
T Consensus 82 l~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 99999987 457899999999999985
No 21
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=8.5e-20 Score=148.94 Aligned_cols=106 Identities=31% Similarity=0.678 Sum_probs=99.6
Q ss_pred CCceEcChhhHHHHh----cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccce
Q psy14086 81 EGLVELTEESFEKYV----SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPT 156 (324)
Q Consensus 81 ~~~~~l~~~~f~~~~----~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~ 156 (324)
..+.++|+.||+..+ ...|++|+||+|||++|+++.|.+++++..++| ++.+++|||+.++.++..|||+++|+
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G--~f~LakvN~D~~p~vAaqfgiqsIPt 100 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG--KFKLAKVNCDAEPMVAAQFGVQSIPT 100 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC--ceEEEEecCCcchhHHHHhCcCcCCe
Confidence 359999999999877 234899999999999999999999999999999 99999999999999999999999999
Q ss_pred EEEEeCCeEeeeecCCCCHHHHHHHHHhhhCC
Q psy14086 157 LLWIESGKKLDKFQGSRTLETLVNYVSKMKGP 188 (324)
Q Consensus 157 ~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~ 188 (324)
++.|.+|+.+.-|.|....+.|.+|+.++++.
T Consensus 101 V~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 101 VYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 99999999999999999999999999999874
No 22
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.82 E-value=1.9e-19 Score=129.67 Aligned_cols=100 Identities=31% Similarity=0.679 Sum_probs=89.9
Q ss_pred CceEcChhhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEe
Q psy14086 82 GLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161 (324)
Q Consensus 82 ~~~~l~~~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~ 161 (324)
.+.+++.++|++.+++ .++|.||++||++|+.+.|.|++++..++. .++.|+.+|++.++.++++|+|+++|++++++
T Consensus 2 ~v~~l~~~~f~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02994 2 NVVELTDSNWTLVLEG-EWMIEFYAPWCPACQQLQPEWEEFADWSDD-LGINVAKVDVTQEPGLSGRFFVTALPTIYHAK 79 (101)
T ss_pred ceEEcChhhHHHHhCC-CEEEEEECCCCHHHHHHhHHHHHHHHhhcc-CCeEEEEEEccCCHhHHHHcCCcccCEEEEeC
Confidence 5788999999988754 589999999999999999999999998753 26999999999999999999999999999998
Q ss_pred CCeEeeeecCCCCHHHHHHHHHh
Q psy14086 162 SGKKLDKFQGSRTLETLVNYVSK 184 (324)
Q Consensus 162 ~g~~~~~~~g~~~~~~i~~fi~~ 184 (324)
+|+. .+|.|..+.++|.+||++
T Consensus 80 ~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 80 DGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred CCCE-EEecCCCCHHHHHHHHhC
Confidence 8874 689999999999999863
No 23
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.82 E-value=2.1e-19 Score=130.03 Aligned_cols=101 Identities=43% Similarity=0.859 Sum_probs=92.7
Q ss_pred eeEeccccccccccC--CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceE
Q psy14086 211 VVSLTSENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI 288 (324)
Q Consensus 211 v~~l~~~~~~~~~~~--~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l 288 (324)
|..+++++|++.+.+ ++++|.||++||++|+.+.|.|++++.+ +.. ++.|+.+|++. ++.++++++|+++|++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~-~~~--~v~~~~vd~~~--~~~l~~~~~v~~~Pt~ 75 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKE-YKD--NVKFAKVDCDE--NKELCKKYGVKSVPTI 75 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHH-TTT--TSEEEEEETTT--SHHHHHHTTCSSSSEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccc-ccc--ccccchhhhhc--cchhhhccCCCCCCEE
Confidence 567899999998865 5899999999999999999999999955 554 79999999998 8999999999999999
Q ss_pred EEEecCeeeeeecCCCCHHHHHHHHHhh
Q psy14086 289 YVYKNGVRTAEYNGSRDLEELYQFILKH 316 (324)
Q Consensus 289 ~~~~~g~~~~~~~g~~~~~~l~~fi~~~ 316 (324)
++|++|+....|.|.++.+.|.+||+++
T Consensus 76 ~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 76 IFFKNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred EEEECCcEEEEEECCCCHHHHHHHHHcC
Confidence 9999999988999999999999999875
No 24
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.82 E-value=9.2e-20 Score=131.23 Aligned_cols=98 Identities=37% Similarity=0.871 Sum_probs=88.4
Q ss_pred CeeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceE
Q psy14086 210 PVVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI 288 (324)
Q Consensus 210 ~v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l 288 (324)
.+..++.++|++.+.+ ++++|.||++||++|+.+.|.|+++|.+ +.. .+.|+.+|++. ++.++++++|+++||+
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~-~~~--~~~~~~vd~~~--~~~~~~~~~v~~~Pt~ 76 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKE-MDG--VIRIGAVNCGD--DRMLCRSQGVNSYPSL 76 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHH-hcC--ceEEEEEeCCc--cHHHHHHcCCCccCEE
Confidence 4778899999988855 5799999999999999999999999965 544 58999999999 8999999999999999
Q ss_pred EEEecCeeeeeecCCCCHHHHHHH
Q psy14086 289 YVYKNGVRTAEYNGSRDLEELYQF 312 (324)
Q Consensus 289 ~~~~~g~~~~~~~g~~~~~~l~~f 312 (324)
++|++|+.+..|.|.++.+.|.+|
T Consensus 77 ~~~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 77 YVFPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred EEEcCCCCcccCCCCCCHHHHHhh
Confidence 999999888889999999999887
No 25
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.82 E-value=2.1e-19 Score=129.75 Aligned_cols=100 Identities=52% Similarity=1.154 Sum_probs=92.3
Q ss_pred ceEcChhhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCC-CCCeEEEEeccccchhhhhhCCccccceEEEEe
Q psy14086 83 LVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKT-EEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161 (324)
Q Consensus 83 ~~~l~~~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~-~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~ 161 (324)
+..++.++|++.+.+++++|.||++||++|+.+.|.|+++++++++ ...+.|+.+||+.+..++++|+|.++|++++|+
T Consensus 2 ~~~l~~~~f~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 81 (102)
T cd03005 2 VLELTEDNFDHHIAEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFK 81 (102)
T ss_pred eeECCHHHHHHHhhcCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEe
Confidence 5688999999999888899999999999999999999999999976 346999999999999999999999999999999
Q ss_pred CCeEeeeecCCCCHHHHHHHH
Q psy14086 162 SGKKLDKFQGSRTLETLVNYV 182 (324)
Q Consensus 162 ~g~~~~~~~g~~~~~~i~~fi 182 (324)
+|+...+|.|..+.++|.+||
T Consensus 82 ~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 82 DGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred CCCeeeEeeCCCCHHHHHhhC
Confidence 998888899999999999885
No 26
>PTZ00062 glutaredoxin; Provisional
Probab=99.82 E-value=7.2e-19 Score=140.01 Aligned_cols=165 Identities=15% Similarity=0.272 Sum_probs=124.2
Q ss_pred cChhhHHHHhc--CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCC
Q psy14086 86 LTEESFEKYVS--LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG 163 (324)
Q Consensus 86 l~~~~f~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g 163 (324)
.+.+.|.+.+. .+..+++|+++||++|+.+.+.+.++++++.. +.|+.||++ |+|.++|++++|++|
T Consensus 4 ~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~---~~F~~V~~d--------~~V~~vPtfv~~~~g 72 (204)
T PTZ00062 4 IKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS---LEFYVVNLA--------DANNEYGVFEFYQNS 72 (204)
T ss_pred CCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC---cEEEEEccc--------cCcccceEEEEEECC
Confidence 35677888876 56789999999999999999999999999964 999999976 999999999999999
Q ss_pred eEeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccCCcEEEEEeC----CCChh
Q psy14086 164 KKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFA----PWCGH 239 (324)
Q Consensus 164 ~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~v~f~~----~~c~~ 239 (324)
+.+.++.|. ++..|..++....... + . .-..+.+.+.+.+++++|+--. |+|+.
T Consensus 73 ~~i~r~~G~-~~~~~~~~~~~~~~~~-------------------~-~-~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~ 130 (204)
T PTZ00062 73 QLINSLEGC-NTSTLVSFIRGWAQKG-------------------S-S-EDTVEKIERLIRNHKILLFMKGSKTFPFCRF 130 (204)
T ss_pred EEEeeeeCC-CHHHHHHHHHHHcCCC-------------------C-H-HHHHHHHHHHHhcCCEEEEEccCCCCCCChh
Confidence 999999987 5899999998887621 0 0 0122335666667777766553 78999
Q ss_pred hhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhh----hcCCCccceEEEEecCee
Q psy14086 240 CKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCN----QEGVDGFPSIYVYKNGVR 296 (324)
Q Consensus 240 C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~----~~~i~~~P~l~~~~~g~~ 296 (324)
|+.+...|++. ++.|..+|... ++++.+ ..+...+|.+ |-+|+-
T Consensus 131 C~~~k~~L~~~---------~i~y~~~DI~~--d~~~~~~l~~~sg~~TvPqV--fI~G~~ 178 (204)
T PTZ00062 131 SNAVVNMLNSS---------GVKYETYNIFE--DPDLREELKVYSNWPTYPQL--YVNGEL 178 (204)
T ss_pred HHHHHHHHHHc---------CCCEEEEEcCC--CHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 99988777654 35566778776 444433 3345567777 445543
No 27
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.81 E-value=1.8e-19 Score=131.28 Aligned_cols=102 Identities=33% Similarity=0.743 Sum_probs=88.5
Q ss_pred CeeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcC---CCCeEEEEEecCCccchhhhhhcCCCcc
Q psy14086 210 PVVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDN---KHGIVIAKVDCTQELSKDLCNQEGVDGF 285 (324)
Q Consensus 210 ~v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~---~~~~~~~~id~~~~~~~~~~~~~~i~~~ 285 (324)
.|..+++++|++.+.. ++++|.||++||++|+.+.|.|++++..+... ...+.|+.+|++. +++++++|+|+++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~ 79 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK--ESDIADRYRINKY 79 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC--CHHHHHhCCCCcC
Confidence 4788899999998855 47999999999999999999999999654221 1258999999999 8999999999999
Q ss_pred ceEEEEecCe-eeeeecCCCCHHHHHHHH
Q psy14086 286 PSIYVYKNGV-RTAEYNGSRDLEELYQFI 313 (324)
Q Consensus 286 P~l~~~~~g~-~~~~~~g~~~~~~l~~fi 313 (324)
|++++|++|+ ....|.|.++.+.|.+||
T Consensus 80 Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 80 PTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999999998 457899999999999986
No 28
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.81 E-value=2.9e-19 Score=130.35 Aligned_cols=105 Identities=24% Similarity=0.390 Sum_probs=92.4
Q ss_pred CCeeEeccccccccccCC--cEEEEEeCCCChh--hh--hhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCC
Q psy14086 209 EPVVSLTSENFNDVIKSG--TVFIKFFAPWCGH--CK--RLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGV 282 (324)
Q Consensus 209 ~~v~~l~~~~~~~~~~~~--~~~v~f~~~~c~~--C~--~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i 282 (324)
..|..+++++|++.+.+. +++++|+++||++ |+ .+.|.+.++|.++++. .++.|+++|++. +++++++|+|
T Consensus 9 ~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~-~~v~~~kVD~d~--~~~La~~~~I 85 (120)
T cd03065 9 DRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED-KGIGFGLVDSKK--DAKVAKKLGL 85 (120)
T ss_pred cceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc-CCCEEEEEeCCC--CHHHHHHcCC
Confidence 579999999999988553 6889999999987 99 7899999999775433 269999999999 8999999999
Q ss_pred CccceEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086 283 DGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317 (324)
Q Consensus 283 ~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~ 317 (324)
.++||+++|++|+.+. |.|.++.+.|.+||.+.+
T Consensus 86 ~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 86 DEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 9999999999999876 999999999999998754
No 29
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.80 E-value=3.9e-19 Score=128.05 Aligned_cols=100 Identities=43% Similarity=0.752 Sum_probs=87.7
Q ss_pred CeeEeccccccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEE
Q psy14086 210 PVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIY 289 (324)
Q Consensus 210 ~v~~l~~~~~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~ 289 (324)
.|..++.++|++.+.+ .++|.||++||++|+.+.|.|++++.. +. ..++.++.+|++. ++.++++++|+++||++
T Consensus 2 ~v~~l~~~~f~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~l~~~-~~-~~~v~~~~vd~~~--~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 2 NVVELTDSNWTLVLEG-EWMIEFYAPWCPACQQLQPEWEEFADW-SD-DLGINVAKVDVTQ--EPGLSGRFFVTALPTIY 76 (101)
T ss_pred ceEEcChhhHHHHhCC-CEEEEEECCCCHHHHHHhHHHHHHHHh-hc-cCCeEEEEEEccC--CHhHHHHcCCcccCEEE
Confidence 4788999999998854 489999999999999999999999954 33 2369999999998 89999999999999999
Q ss_pred EEecCeeeeeecCCCCHHHHHHHHHh
Q psy14086 290 VYKNGVRTAEYNGSRDLEELYQFILK 315 (324)
Q Consensus 290 ~~~~g~~~~~~~g~~~~~~l~~fi~~ 315 (324)
+|++|+. ..|.|.++.++|.+||.+
T Consensus 77 ~~~~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 77 HAKDGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EeCCCCE-EEecCCCCHHHHHHHHhC
Confidence 9999874 679999999999999863
No 30
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.80 E-value=6.3e-17 Score=134.02 Aligned_cols=264 Identities=16% Similarity=0.220 Sum_probs=181.4
Q ss_pred CCCceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceE
Q psy14086 6 EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVE 85 (324)
Q Consensus 6 ~~~~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (324)
++..|.||.||..++.+|++|+|+...++|.+|+++. .++|+|.++++.++.|+.+.... +|..
T Consensus 87 E~~gigfg~VD~~Kd~klAKKLgv~E~~SiyVfkd~~---~IEydG~~saDtLVeFl~dl~ed-------------PVei 150 (383)
T PF01216_consen 87 EDKGIGFGMVDSKKDAKLAKKLGVEEEGSIYVFKDGE---VIEYDGERSADTLVEFLLDLLED-------------PVEI 150 (383)
T ss_dssp GGCTEEEEEEETTTTHHHHHHHT--STTEEEEEETTE---EEEE-S--SHHHHHHHHHHHHSS-------------SEEE
T ss_pred cccCcceEEeccHHHHHHHHhcCccccCcEEEEECCc---EEEecCccCHHHHHHHHHHhccc-------------chhh
Confidence 5678999999999999999999999999999999766 89999999999999999999975 6777
Q ss_pred cChhh-H--HHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeC
Q psy14086 86 LTEES-F--EKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIES 162 (324)
Q Consensus 86 l~~~~-f--~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~ 162 (324)
++.+. + ...++..+.+|.|+.+.-+. ....|.++|..|+. -|.|. ++-++.+++++++. .-.+-+|.+
T Consensus 151 In~~~e~~~Fe~ied~~klIGyFk~~~s~---~yk~FeeAAe~F~p--~IkFf---Atfd~~vAk~L~lK-~nev~fyep 221 (383)
T PF01216_consen 151 INNKHELKAFERIEDDIKLIGYFKSEDSE---HYKEFEEAAEHFQP--YIKFF---ATFDKKVAKKLGLK-LNEVDFYEP 221 (383)
T ss_dssp E-SHHHHHHHHH--SS-EEEEE-SSTTSH---HHHHHHHHHHHCTT--TSEEE---EE-SHHHHHHHT-S-TT-EEEE-T
T ss_pred hcChhhhhhhhhcccceeEEEEeCCCCcH---HHHHHHHHHHhhcC--ceeEE---EEecchhhhhcCcc-ccceeeecc
Confidence 76543 2 22234456677777664332 35689999999988 78888 45678999999997 777888887
Q ss_pred --CeEeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccC---CcEEEEEeCCCC
Q psy14086 163 --GKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKS---GTVFIKFFAPWC 237 (324)
Q Consensus 163 --g~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~---~~~~v~f~~~~c 237 (324)
.+++.....+.+.++|++||+++.. +.++.++..++.+...+ +..+|.|.....
T Consensus 222 F~~~pi~ip~~p~~e~e~~~fi~~h~r---------------------ptlrkl~~~~m~e~Wedd~~g~hIvaFaee~d 280 (383)
T PF01216_consen 222 FMDEPITIPGKPYTEEELVEFIEEHKR---------------------PTLRKLRPEDMFETWEDDIDGIHIVAFAEEED 280 (383)
T ss_dssp TSSSEEEESSSS--HHHHHHHHHHT-S----------------------SEEE--GGGHHHHHHSSSSSEEEEEE--TTS
T ss_pred ccCCCccCCCCCCCHHHHHHHHHHhch---------------------hHhhhCChhhhhhhhcccCCCceEEEEecCCC
Confidence 4555544456899999999999876 67999999997666644 468888988888
Q ss_pred hhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccch----hhhhhcCCC-ccceEEEEec--Ceeee-eecCC---CCH
Q psy14086 238 GHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK----DLCNQEGVD-GFPSIYVYKN--GVRTA-EYNGS---RDL 306 (324)
Q Consensus 238 ~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~i~-~~P~l~~~~~--g~~~~-~~~g~---~~~ 306 (324)
+...++..++.++|++ ...++.+.+++||-+. .+ -+.+.|+|. .-|.|-+..- ..-+. ...+. -+.
T Consensus 281 pdG~efleilk~va~~-nt~np~LsivwIDPD~--fPllv~yWE~tF~Idl~~PqIGvVnvtdadsvW~dm~d~~d~pt~ 357 (383)
T PF01216_consen 281 PDGFEFLEILKQVARD-NTDNPDLSIVWIDPDD--FPLLVPYWEKTFGIDLSRPQIGVVNVTDADSVWMDMDDDDDLPTA 357 (383)
T ss_dssp HHHHHHHHHHHHHHHH-CTT-TT--EEEE-GGG---HHHHHHHHHHHTT-TTS-EEEEEETTTSEEEEC-STTTSS---H
T ss_pred CchHHHHHHHHHHHHh-cCcCCceeEEEECCCC--CchhHHHHHhhcCccccCCceeEEeccccccchhccCCcccCCcH
Confidence 9999999999999966 4555689999999776 54 334668876 4599988852 22222 22221 378
Q ss_pred HHHHHHHHhhcc
Q psy14086 307 EELYQFILKHKV 318 (324)
Q Consensus 307 ~~l~~fi~~~~~ 318 (324)
+.|.+||.+.+.
T Consensus 358 ~~LedWieDVls 369 (383)
T PF01216_consen 358 EELEDWIEDVLS 369 (383)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999999875
No 31
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.80 E-value=2.8e-19 Score=129.48 Aligned_cols=99 Identities=29% Similarity=0.746 Sum_probs=87.7
Q ss_pred CeeEeccccccccccC--CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccce
Q psy14086 210 PVVSLTSENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287 (324)
Q Consensus 210 ~v~~l~~~~~~~~~~~--~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~ 287 (324)
.+..++.++|++.+.+ ++++|.||++||++|+.+.|.|++++.+ +.. .+.|+.+|++. +++++++++|.++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~-~~~--~~~~~~vd~~~--~~~~~~~~~i~~~Pt 76 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARA-LKG--KVKVGSVDCQK--YESLCQQANIRAYPT 76 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHH-hcC--CcEEEEEECCc--hHHHHHHcCCCcccE
Confidence 4778899999988743 4799999999999999999999999966 443 69999999999 899999999999999
Q ss_pred EEEEecC-eeeeeecCCCC-HHHHHHHH
Q psy14086 288 IYVYKNG-VRTAEYNGSRD-LEELYQFI 313 (324)
Q Consensus 288 l~~~~~g-~~~~~~~g~~~-~~~l~~fi 313 (324)
+++|++| +.+..|.|..+ .++|.+||
T Consensus 77 ~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 77 IRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 9999987 77888999987 99999885
No 32
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.80 E-value=1.5e-18 Score=140.60 Aligned_cols=108 Identities=39% Similarity=0.737 Sum_probs=98.1
Q ss_pred CCCceEcChhhHHHHhc------CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccc
Q psy14086 80 NEGLVELTEESFEKYVS------LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKS 153 (324)
Q Consensus 80 ~~~~~~l~~~~f~~~~~------~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~ 153 (324)
...+.++++++|++.+. .++++|.||++||++|+.+.|.|+++++.+++ .+.|+.+|+++++.++++|+|++
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~~~l~~~~~I~~ 106 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRALNLAKRFAIKG 106 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCcccHHHHHHcCCCc
Confidence 45789999999999874 35799999999999999999999999999987 79999999999999999999999
Q ss_pred cceEEEEeCCeEeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086 154 YPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPL 189 (324)
Q Consensus 154 ~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~~ 189 (324)
+|++++|++|+....+.|.++.++|.+|+.+.....
T Consensus 107 ~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 107 YPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred CCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 999999999987776678899999999999987643
No 33
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.80 E-value=5.6e-19 Score=127.53 Aligned_cols=101 Identities=50% Similarity=1.069 Sum_probs=90.0
Q ss_pred eeEeccccccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEE
Q psy14086 211 VVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYV 290 (324)
Q Consensus 211 v~~l~~~~~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~ 290 (324)
+..+++++|++.+.+++++|.||++||++|+.+.|.+++++.++......+.++.+|++. +..+++.++|.++|++++
T Consensus 2 ~~~l~~~~f~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHIAEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ--HRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHhhcCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC--ChhhHhhcCCCcCCEEEE
Confidence 567889999999887789999999999999999999999997643323469999999998 889999999999999999
Q ss_pred EecCeeeeeecCCCCHHHHHHHH
Q psy14086 291 YKNGVRTAEYNGSRDLEELYQFI 313 (324)
Q Consensus 291 ~~~g~~~~~~~g~~~~~~l~~fi 313 (324)
|++|+.+..|.|.++.+.|.+||
T Consensus 80 ~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCCeeeEeeCCCCHHHHHhhC
Confidence 99998888899999999998885
No 34
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.79 E-value=1e-18 Score=127.61 Aligned_cols=100 Identities=24% Similarity=0.451 Sum_probs=88.9
Q ss_pred eEcChhhHHHHh----cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086 84 VELTEESFEKYV----SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW 159 (324)
Q Consensus 84 ~~l~~~~f~~~~----~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~ 159 (324)
..++.++|.+.+ .+++++|.||++||++|+.+.|.|.++++.+++. ++.|+.||++.++.++++++|+++|++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i 85 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL-GVGIATVNAGHERRLARKLGAHSVPAIVG 85 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc-CceEEEEeccccHHHHHHcCCccCCEEEE
Confidence 346778887654 3468999999999999999999999999999752 59999999999999999999999999999
Q ss_pred EeCCeEeeeecCCCCHHHHHHHHHh
Q psy14086 160 IESGKKLDKFQGSRTLETLVNYVSK 184 (324)
Q Consensus 160 ~~~g~~~~~~~g~~~~~~i~~fi~~ 184 (324)
|++|+...++.|..+.+.|.+||++
T Consensus 86 ~~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 86 IINGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EECCEEEEEecCCCCHHHHHHHHhc
Confidence 9999888888999999999999975
No 35
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.79 E-value=1.3e-18 Score=127.28 Aligned_cols=98 Identities=33% Similarity=0.796 Sum_probs=88.5
Q ss_pred ceEcChhhHHHHhcC--CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc--chhhhhhCCccccceEE
Q psy14086 83 LVELTEESFEKYVSL--GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ--HRSICQSFDIKSYPTLL 158 (324)
Q Consensus 83 ~~~l~~~~f~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~--~~~~~~~~~i~~~P~~~ 158 (324)
+.+++.++|++.+.+ .+++|.||++||++|+.+.|.|+++++.+.+ .+.|+.+|++. +..++++|+|+++|+++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCDEDKNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC--CceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence 578999999998733 3589999999999999999999999999987 79999999998 88999999999999999
Q ss_pred EEeCCe-----EeeeecCCCCHHHHHHHH
Q psy14086 159 WIESGK-----KLDKFQGSRTLETLVNYV 182 (324)
Q Consensus 159 ~~~~g~-----~~~~~~g~~~~~~i~~fi 182 (324)
+|++|+ ....|.|.++.++|.+||
T Consensus 80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 80 VFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EEeCCCcccccccccccCccCHHHHHHHh
Confidence 999885 456799999999999997
No 36
>PRK09381 trxA thioredoxin; Provisional
Probab=99.79 E-value=3.6e-18 Score=124.75 Aligned_cols=104 Identities=27% Similarity=0.604 Sum_probs=94.9
Q ss_pred CCceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086 81 EGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL 158 (324)
Q Consensus 81 ~~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~ 158 (324)
+.+.+++.++|.+.+ .+++++|.||++||++|+.+.|.|+++++.+.+ ++.|+.+|++....++++|+++++|+++
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 80 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLL 80 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCChhHHHhCCCCcCCEEE
Confidence 468889999998765 355789999999999999999999999999987 7999999999999999999999999999
Q ss_pred EEeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086 159 WIESGKKLDKFQGSRTLETLVNYVSKMK 186 (324)
Q Consensus 159 ~~~~g~~~~~~~g~~~~~~i~~fi~~~~ 186 (324)
+|++|+...++.|..+.+.|.+||...+
T Consensus 81 ~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 81 LFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 9999998888999999999999998765
No 37
>PHA02278 thioredoxin-like protein
Probab=99.78 E-value=3.5e-18 Score=121.91 Aligned_cols=92 Identities=18% Similarity=0.267 Sum_probs=81.0
Q ss_pred hhhHHHHhc-CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc----hhhhhhCCccccceEEEEeC
Q psy14086 88 EESFEKYVS-LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH----RSICQSFDIKSYPTLLWIES 162 (324)
Q Consensus 88 ~~~f~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~----~~~~~~~~i~~~P~~~~~~~ 162 (324)
.++|.+.+. +++++|.|||+||++|+.+.|.+++++.++.. ++.|+.+|++.+ ..++++|+|.++||+++|++
T Consensus 4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~--~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI--KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC--CceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence 467777764 56889999999999999999999999988655 577899998875 68999999999999999999
Q ss_pred CeEeeeecCCCCHHHHHHH
Q psy14086 163 GKKLDKFQGSRTLETLVNY 181 (324)
Q Consensus 163 g~~~~~~~g~~~~~~i~~f 181 (324)
|+.+.+..|..+.+.|.++
T Consensus 82 G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 82 GQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CEEEEEEeCCCCHHHHHhh
Confidence 9999999999999888876
No 38
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.78 E-value=4.5e-18 Score=123.00 Aligned_cols=98 Identities=37% Similarity=0.776 Sum_probs=88.9
Q ss_pred ceEcChhhHHHHhcC-C-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEE
Q psy14086 83 LVELTEESFEKYVSL-G-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160 (324)
Q Consensus 83 ~~~l~~~~f~~~~~~-~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~ 160 (324)
+.+++.++|.+.+.+ + +++|+||++||++|+.+.|.|.++++.+++ .+.|+.+|++.+..++++|+|+++|++++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG--IVKVGAVDADVHQSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence 578899999988733 3 489999999999999999999999999987 799999999999999999999999999999
Q ss_pred eCC-eEeeeecCCCCHHHHHHHH
Q psy14086 161 ESG-KKLDKFQGSRTLETLVNYV 182 (324)
Q Consensus 161 ~~g-~~~~~~~g~~~~~~i~~fi 182 (324)
++| .....|.|..+.++|.+|+
T Consensus 80 ~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 80 GAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCCCcceeecCCCCCHHHHHHHh
Confidence 988 5566799999999999997
No 39
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.77 E-value=2.6e-18 Score=125.47 Aligned_cols=99 Identities=27% Similarity=0.441 Sum_probs=84.7
Q ss_pred Eeccccccccc----cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceE
Q psy14086 213 SLTSENFNDVI----KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI 288 (324)
Q Consensus 213 ~l~~~~~~~~~----~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l 288 (324)
.++.++|++.+ .+++++|.||++||++|+.+.|.|+++++++... ++.++.+|++. ++.++.+++|.++||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~d~--~~~l~~~~~V~~~Pt~ 83 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL--GVGIATVNAGH--ERRLARKLGAHSVPAI 83 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc--CceEEEEeccc--cHHHHHHcCCccCCEE
Confidence 34666676533 3468999999999999999999999999664322 58999999998 8899999999999999
Q ss_pred EEEecCeeeeeecCCCCHHHHHHHHHh
Q psy14086 289 YVYKNGVRTAEYNGSRDLEELYQFILK 315 (324)
Q Consensus 289 ~~~~~g~~~~~~~g~~~~~~l~~fi~~ 315 (324)
++|++|+.+..+.|..+.+.|.+||.+
T Consensus 84 ~i~~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 84 VGIINGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EEEECCEEEEEecCCCCHHHHHHHHhc
Confidence 999999888788999999999999975
No 40
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.7e-18 Score=141.42 Aligned_cols=106 Identities=31% Similarity=0.643 Sum_probs=96.8
Q ss_pred CCeeEecccccccccc----CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCc
Q psy14086 209 EPVVSLTSENFNDVIK----SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG 284 (324)
Q Consensus 209 ~~v~~l~~~~~~~~~~----~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~ 284 (324)
..++++|+.+|...+. ..||+|+||+|||++|+.+.|.++.++.. +.+ ++.+++|||+. .+.+...|||++
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~-~~G--~f~LakvN~D~--~p~vAaqfgiqs 97 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAE-YKG--KFKLAKVNCDA--EPMVAAQFGVQS 97 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHH-hCC--ceEEEEecCCc--chhHHHHhCcCc
Confidence 4499999999998763 24899999999999999999999999966 555 79999999999 999999999999
Q ss_pred cceEEEEecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086 285 FPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVE 319 (324)
Q Consensus 285 ~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~ 319 (324)
+|++++|++|+.+.-|.|....+.|.+||.++++.
T Consensus 98 IPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 98 IPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred CCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 99999999999999999999999999999998774
No 41
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.77 E-value=2.5e-18 Score=123.29 Aligned_cols=85 Identities=13% Similarity=0.223 Sum_probs=75.7
Q ss_pred hhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCe
Q psy14086 88 EESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGK 164 (324)
Q Consensus 88 ~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~ 164 (324)
.++|++.+. +++++|.||++||++|+.+.|.+.+++.++.+ .+.|++||+++++.++++|+|+++||+++|++|+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence 456777774 45789999999999999999999999999987 7899999999999999999999999999999999
Q ss_pred EeeeecCCCC
Q psy14086 165 KLDKFQGSRT 174 (324)
Q Consensus 165 ~~~~~~g~~~ 174 (324)
.+.+..|..+
T Consensus 80 ~v~~~~G~~~ 89 (114)
T cd02954 80 HMKIDLGTGN 89 (114)
T ss_pred EEEEEcCCCC
Confidence 8887777543
No 42
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.77 E-value=4.8e-18 Score=121.13 Aligned_cols=92 Identities=26% Similarity=0.542 Sum_probs=83.4
Q ss_pred hHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEe
Q psy14086 90 SFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKL 166 (324)
Q Consensus 90 ~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~ 166 (324)
+|++.+. +++++|.||++||++|+.+.|.+.+++..+.+ .+.++.+|++.+..++++|+|.++|++++|++|+..
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEe
Confidence 4665552 34789999999999999999999999999987 799999999999999999999999999999999888
Q ss_pred eeecCCCCHHHHHHHHH
Q psy14086 167 DKFQGSRTLETLVNYVS 183 (324)
Q Consensus 167 ~~~~g~~~~~~i~~fi~ 183 (324)
.++.|..+.+.|.+||.
T Consensus 80 ~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 80 DGFQGAQPEEQLRQMLD 96 (96)
T ss_pred eeecCCCCHHHHHHHhC
Confidence 88999999999999873
No 43
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.77 E-value=5.7e-18 Score=122.22 Aligned_cols=100 Identities=37% Similarity=0.820 Sum_probs=89.9
Q ss_pred cChhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCe
Q psy14086 86 LTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGK 164 (324)
Q Consensus 86 l~~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~ 164 (324)
|+.++|++.+.+ ++++|+||++||++|+.+.+.|++++..+++..++.++.+|++++..++++|+|+++|++++|++|+
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 567888888754 4679999999999999999999999999987556999999999999999999999999999999987
Q ss_pred EeeeecCCCCHHHHHHHHHhh
Q psy14086 165 KLDKFQGSRTLETLVNYVSKM 185 (324)
Q Consensus 165 ~~~~~~g~~~~~~i~~fi~~~ 185 (324)
....|.|..+.++|..||++.
T Consensus 81 ~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 81 KPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred cceeecCCCCHHHHHHHHHhc
Confidence 677899999999999999874
No 44
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.77 E-value=3.5e-18 Score=122.09 Aligned_cols=83 Identities=27% Similarity=0.534 Sum_probs=76.5
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-cchhhhhhCCccccceEEEEeCCeEeeeecCCCC
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRT 174 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~ 174 (324)
.+++++|.||++||++|+.+.|.|+++++.+++ +.++.+|++ .++.++++|+|+++||+++|++| ...+|.|.++
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~---~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~ 92 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ---IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRT 92 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc---CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCC
Confidence 455789999999999999999999999999964 889999998 78999999999999999999999 7788999999
Q ss_pred HHHHHHHH
Q psy14086 175 LETLVNYV 182 (324)
Q Consensus 175 ~~~i~~fi 182 (324)
.++|.+||
T Consensus 93 ~~~l~~f~ 100 (100)
T cd02999 93 LDSLAAFY 100 (100)
T ss_pred HHHHHhhC
Confidence 99999985
No 45
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.76 E-value=9.5e-18 Score=121.52 Aligned_cols=100 Identities=35% Similarity=0.861 Sum_probs=89.8
Q ss_pred ceEcChhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc--chhhhhhCCccccceEEE
Q psy14086 83 LVELTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ--HRSICQSFDIKSYPTLLW 159 (324)
Q Consensus 83 ~~~l~~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~--~~~~~~~~~i~~~P~~~~ 159 (324)
+..++..+|+..+.+ ++++|.||++||++|+++.|.++++++.+.....+.++.+|++. +..++++++|+++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~ 81 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY 81 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence 567888999888844 47899999999999999999999999999743479999999998 899999999999999999
Q ss_pred EeCCeEeeeecCCCCHHHHHHHH
Q psy14086 160 IESGKKLDKFQGSRTLETLVNYV 182 (324)
Q Consensus 160 ~~~g~~~~~~~g~~~~~~i~~fi 182 (324)
+++|+...+|.|..+.+++.+||
T Consensus 82 ~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 82 FENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EeCCCeeEEeCCCCCHHHHHhhC
Confidence 99998888899999999999885
No 46
>PRK10996 thioredoxin 2; Provisional
Probab=99.76 E-value=2.4e-17 Score=125.13 Aligned_cols=103 Identities=23% Similarity=0.584 Sum_probs=94.4
Q ss_pred CCceEcChhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086 81 EGLVELTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW 159 (324)
Q Consensus 81 ~~~~~l~~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~ 159 (324)
..+.+++.++|++.+.+ ++++|.||++||++|+.+.+.|.++++++.+ ++.|+.+|++.++.++++|+|+++|++++
T Consensus 35 ~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~V~~~Ptlii 112 (139)
T PRK10996 35 GEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTEAERELSARFRIRSIPTIMI 112 (139)
T ss_pred CCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCHHHHHhcCCCccCEEEE
Confidence 34677899999998854 4689999999999999999999999999887 79999999999999999999999999999
Q ss_pred EeCCeEeeeecCCCCHHHHHHHHHhh
Q psy14086 160 IESGKKLDKFQGSRTLETLVNYVSKM 185 (324)
Q Consensus 160 ~~~g~~~~~~~g~~~~~~i~~fi~~~ 185 (324)
|++|+.+.++.|..+.+.|.+|+.+.
T Consensus 113 ~~~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 113 FKNGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EECCEEEEEEcCCCCHHHHHHHHHHh
Confidence 99999998999999999999999875
No 47
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.76 E-value=1.6e-17 Score=118.23 Aligned_cols=96 Identities=17% Similarity=0.323 Sum_probs=88.2
Q ss_pred CceEcChhhHHHHhcC-CCEEEEEeCCC--CHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086 82 GLVELTEESFEKYVSL-GNHFVKFYAPW--CGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL 158 (324)
Q Consensus 82 ~~~~l~~~~f~~~~~~-~~~~v~f~~~~--c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~ 158 (324)
+...++..+|++.+.. +..++.||++| |++|+.+.|.|.++++++.+ .+.|+.+|++.++.++.+|+|+++||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid~~~~la~~f~V~sIPTli 88 (111)
T cd02965 11 GWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRADEQALAARFGVLRTPALL 88 (111)
T ss_pred CCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence 5678999999988844 67899999997 99999999999999999987 7999999999999999999999999999
Q ss_pred EEeCCeEeeeecCCCCHHHHH
Q psy14086 159 WIESGKKLDKFQGSRTLETLV 179 (324)
Q Consensus 159 ~~~~g~~~~~~~g~~~~~~i~ 179 (324)
+|++|+...+..|..+.+++.
T Consensus 89 ~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 89 FFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEECCEEEEEEeCccCHHHHh
Confidence 999999999999998887765
No 48
>PHA02278 thioredoxin-like protein
Probab=99.76 E-value=6e-18 Score=120.67 Aligned_cols=93 Identities=17% Similarity=0.238 Sum_probs=77.1
Q ss_pred cccccccc-CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc--chhhhhhcCCCccceEEEEec
Q psy14086 217 ENFNDVIK-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL--SKDLCNQEGVDGFPSIYVYKN 293 (324)
Q Consensus 217 ~~~~~~~~-~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~--~~~~~~~~~i~~~P~l~~~~~ 293 (324)
++|.+.+. +++++|.||++||++|+.+.|.+++++.+ +.. .+.|+.+|++... .++++++|+|.++||+++|++
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~-~~~--~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQES-GDI--KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhh-hcC--CceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence 44666654 46899999999999999999999999855 333 4678999988711 157899999999999999999
Q ss_pred CeeeeeecCCCCHHHHHHH
Q psy14086 294 GVRTAEYNGSRDLEELYQF 312 (324)
Q Consensus 294 g~~~~~~~g~~~~~~l~~f 312 (324)
|+.+....|..+.+.+.++
T Consensus 82 G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 82 GQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CEEEEEEeCCCCHHHHHhh
Confidence 9999999998888888775
No 49
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.75 E-value=1e-17 Score=135.72 Aligned_cols=107 Identities=31% Similarity=0.724 Sum_probs=94.7
Q ss_pred CCCeeEecccccccccc------CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcC
Q psy14086 208 PEPVVSLTSENFNDVIK------SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEG 281 (324)
Q Consensus 208 ~~~v~~l~~~~~~~~~~------~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~ 281 (324)
+..+..+++++|++.+. +++++|.||++||++|+.+.|.|++++++ +.. .+.++.+|++. +++++++|+
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~-~~~--~v~~~~VD~~~--~~~l~~~~~ 103 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKA-LKG--QVNVADLDATR--ALNLAKRFA 103 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHH-cCC--CeEEEEecCcc--cHHHHHHcC
Confidence 36799999999999874 35899999999999999999999999966 544 58999999999 899999999
Q ss_pred CCccceEEEEecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086 282 VDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVE 319 (324)
Q Consensus 282 i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~ 319 (324)
|+++||+++|++|+.+..+.|.++.++|.+|+.+....
T Consensus 104 I~~~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~ 141 (224)
T PTZ00443 104 IKGYPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFKK 141 (224)
T ss_pred CCcCCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHHh
Confidence 99999999999998877777889999999999887653
No 50
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.75 E-value=8.1e-18 Score=122.96 Aligned_cols=101 Identities=39% Similarity=0.872 Sum_probs=86.9
Q ss_pred eeEeccccccccccC--CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceE
Q psy14086 211 VVSLTSENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI 288 (324)
Q Consensus 211 v~~l~~~~~~~~~~~--~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l 288 (324)
|..+++++|++.+.+ ++++|.||++||++|+.+.|.+++++++ +.. .+.++.+|++...+.++++.++|+++|++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~-~~~--~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~ 78 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKE-LDG--LVQVAAVDCDEDKNKPLCGKYGVQGFPTL 78 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHH-hcC--CceEEEEecCccccHHHHHHcCCCcCCEE
Confidence 678899999988754 4699999999999999999999999965 444 58899999987556789999999999999
Q ss_pred EEEecCe-----eeeeecCCCCHHHHHHHHH
Q psy14086 289 YVYKNGV-----RTAEYNGSRDLEELYQFIL 314 (324)
Q Consensus 289 ~~~~~g~-----~~~~~~g~~~~~~l~~fi~ 314 (324)
++|++|+ ....|.|.++.+.|.+||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 79 KVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 9998875 3567999999999999983
No 51
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.75 E-value=1.1e-17 Score=120.34 Aligned_cols=98 Identities=20% Similarity=0.372 Sum_probs=83.2
Q ss_pred CceEcChhhHHHHhcCC-CEEEEEeC--CCCH---hHhhHHHHHHHHHHhcCCCCCeEEEEecc-----ccchhhhhhCC
Q psy14086 82 GLVELTEESFEKYVSLG-NHFVKFYA--PWCG---HCQSLAPVWQELASHFKTEEDVSIAKIDC-----TQHRSICQSFD 150 (324)
Q Consensus 82 ~~~~l~~~~f~~~~~~~-~~~v~f~~--~~c~---~c~~~~~~~~~la~~~~~~~~i~~~~vd~-----~~~~~~~~~~~ 150 (324)
.+..|++++|++.+.+. .++|.||+ |||+ +|+.+.|++...+. .+.++.||| .++.++|++|+
T Consensus 2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~~~~~~L~~~y~ 75 (116)
T cd03007 2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGEKLNMELGERYK 75 (116)
T ss_pred CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccchhhHHHHHHhC
Confidence 47889999999999655 57999999 9999 77777777766553 389999999 56789999999
Q ss_pred cc--ccceEEEEeCCe--EeeeecCC-CCHHHHHHHHHhh
Q psy14086 151 IK--SYPTLLWIESGK--KLDKFQGS-RTLETLVNYVSKM 185 (324)
Q Consensus 151 i~--~~P~~~~~~~g~--~~~~~~g~-~~~~~i~~fi~~~ 185 (324)
|+ ++|||.+|++|. ....|.|. ++.++|++||++.
T Consensus 76 I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 76 LDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 99 999999999885 44679997 9999999999874
No 52
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.75 E-value=5.9e-18 Score=121.81 Aligned_cols=100 Identities=24% Similarity=0.443 Sum_probs=81.6
Q ss_pred CeeEeccccccccccCC-cEEEEEeC--CCCh---hhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---ccchhhhhhc
Q psy14086 210 PVVSLTSENFNDVIKSG-TVFIKFFA--PWCG---HCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---ELSKDLCNQE 280 (324)
Q Consensus 210 ~v~~l~~~~~~~~~~~~-~~~v~f~~--~~c~---~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---~~~~~~~~~~ 280 (324)
.+..|+..+|++++.+. .++|.||+ |||+ +|+.+.|.+...+ ..+.++.||++. .++.+++++|
T Consensus 2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa-------~~v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASAT-------DDLLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhc-------CceEEEEEecccccchhhHHHHHHh
Confidence 37789999999999664 69999999 8888 5655555555544 248999999943 1268899999
Q ss_pred CCC--ccceEEEEecCe--eeeeecCC-CCHHHHHHHHHhh
Q psy14086 281 GVD--GFPSIYVYKNGV--RTAEYNGS-RDLEELYQFILKH 316 (324)
Q Consensus 281 ~i~--~~P~l~~~~~g~--~~~~~~g~-~~~~~l~~fi~~~ 316 (324)
+|+ ++|||.+|++|. ....|.|. ++.+.|.+||+++
T Consensus 75 ~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 75 KLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999 999999999885 45689997 9999999999875
No 53
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.75 E-value=1.5e-17 Score=120.44 Aligned_cols=99 Identities=37% Similarity=0.828 Sum_probs=88.1
Q ss_pred ceEcChhhHHHHhcC--CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEE
Q psy14086 83 LVELTEESFEKYVSL--GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160 (324)
Q Consensus 83 ~~~l~~~~f~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~ 160 (324)
+.+|+.++|++.+.+ ++++|+||++||++|+.+.|.|+++++.+++..++.|+.+|++.+ .++..+++.++|++++|
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF 80 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE
Confidence 678999999998743 478999999999999999999999999997655799999999987 58889999999999999
Q ss_pred eCCe--EeeeecCCCCHHHHHHHH
Q psy14086 161 ESGK--KLDKFQGSRTLETLVNYV 182 (324)
Q Consensus 161 ~~g~--~~~~~~g~~~~~~i~~fi 182 (324)
++|+ ...+|.|..+.++|.+||
T Consensus 81 ~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 81 PAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCcCCceEccCCcCHHHHHhhC
Confidence 9886 567799999999999986
No 54
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.74 E-value=2.2e-17 Score=120.30 Aligned_cols=100 Identities=27% Similarity=0.629 Sum_probs=86.6
Q ss_pred CceEcChhhHHHHhc----CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-chhhhh-hCCccccc
Q psy14086 82 GLVELTEESFEKYVS----LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-HRSICQ-SFDIKSYP 155 (324)
Q Consensus 82 ~~~~l~~~~f~~~~~----~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-~~~~~~-~~~i~~~P 155 (324)
.+.+++.++|+.++. +++++|.||++||++|+++.|.|.++++.+++ ..+.++.+|++. ...++. .++++++|
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~-~~~~~~~vd~d~~~~~~~~~~~~v~~~P 80 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG-SNVKVAKFNADGEQREFAKEELQLKSFP 80 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc-CCeEEEEEECCccchhhHHhhcCCCcCC
Confidence 578899999998883 45899999999999999999999999999985 259999999997 577886 59999999
Q ss_pred eEEEEeCC-eEeeeecCC-CCHHHHHHHH
Q psy14086 156 TLLWIESG-KKLDKFQGS-RTLETLVNYV 182 (324)
Q Consensus 156 ~~~~~~~g-~~~~~~~g~-~~~~~i~~fi 182 (324)
++++|++| .....|.|. ++.++|..||
T Consensus 81 ti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 81 TILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 99999875 456679995 8999999885
No 55
>PRK09381 trxA thioredoxin; Provisional
Probab=99.74 E-value=3.2e-17 Score=119.69 Aligned_cols=104 Identities=27% Similarity=0.637 Sum_probs=92.1
Q ss_pred CCeeEeccccccccc-c-CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086 209 EPVVSLTSENFNDVI-K-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP 286 (324)
Q Consensus 209 ~~v~~l~~~~~~~~~-~-~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P 286 (324)
..|+.+++++|.+.+ + +++++|.||++||++|+.+.|.|++++++ +.. ++.++.+|++. ++.+++++++.++|
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~-~~~--~~~~~~vd~~~--~~~~~~~~~v~~~P 77 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE-YQG--KLTVAKLNIDQ--NPGTAPKYGIRGIP 77 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHH-hCC--CcEEEEEECCC--ChhHHHhCCCCcCC
Confidence 468889999988754 3 45899999999999999999999999965 544 68999999999 88999999999999
Q ss_pred eEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086 287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317 (324)
Q Consensus 287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~ 317 (324)
++++|++|+.+..+.|..+.+.|..||...+
T Consensus 78 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 78 TLLLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 9999999998888999999999999998775
No 56
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.74 E-value=1.1e-17 Score=119.42 Aligned_cols=83 Identities=25% Similarity=0.558 Sum_probs=74.2
Q ss_pred cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC-CccchhhhhhcCCCccceEEEEecCeeeeeecC
Q psy14086 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT-QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNG 302 (324)
Q Consensus 224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~-~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g 302 (324)
.+++++|.||++||++|+.+.|.|++++++ +. ++.++.+|.+ . +++++++|+|.++||+++|++| .+..|.|
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~-~~---~~~~~~vd~~~~--~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G 89 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSM-FP---QIRHLAIEESSI--KPSLLSRYGVVGFPTILLFNST-PRVRYNG 89 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHH-hc---cCceEEEECCCC--CHHHHHhcCCeecCEEEEEcCC-ceeEecC
Confidence 356899999999999999999999999965 43 3788899988 6 7899999999999999999998 7778999
Q ss_pred CCCHHHHHHHH
Q psy14086 303 SRDLEELYQFI 313 (324)
Q Consensus 303 ~~~~~~l~~fi 313 (324)
.++.+.|.+||
T Consensus 90 ~~~~~~l~~f~ 100 (100)
T cd02999 90 TRTLDSLAAFY 100 (100)
T ss_pred CCCHHHHHhhC
Confidence 99999999985
No 57
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.74 E-value=2.6e-17 Score=119.01 Aligned_cols=96 Identities=33% Similarity=0.779 Sum_probs=84.9
Q ss_pred hhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC-CCeEEEEeccccchhhhhhCCccccceEEEEeCCeEee
Q psy14086 89 ESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD 167 (324)
Q Consensus 89 ~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~ 167 (324)
++|++..+++.++|.||++||++|+.+.|.|+++++.++.. ..+.++.+|++.++.++++|+|.++|++++|++|. ..
T Consensus 7 ~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~-~~ 85 (104)
T cd03000 7 DSFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL-AY 85 (104)
T ss_pred hhhhhhccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-ce
Confidence 67777767778999999999999999999999999998642 25999999999999999999999999999997764 45
Q ss_pred eecCCCCHHHHHHHHHhh
Q psy14086 168 KFQGSRTLETLVNYVSKM 185 (324)
Q Consensus 168 ~~~g~~~~~~i~~fi~~~ 185 (324)
+|.|..+.++|.+|+++.
T Consensus 86 ~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 86 NYRGPRTKDDIVEFANRV 103 (104)
T ss_pred eecCCCCHHHHHHHHHhh
Confidence 689999999999999874
No 58
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.74 E-value=8.9e-18 Score=120.49 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=70.4
Q ss_pred cccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEec
Q psy14086 217 ENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKN 293 (324)
Q Consensus 217 ~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~ 293 (324)
+.|++.+. +++++|.||++||++|+.+.|.+++++.+ +.+ .+.|+++|++. ++++.++|+|.++||+++|++
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~-~~~--~v~f~kVDvD~--~~~la~~~~V~~iPTf~~fk~ 77 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAED-VSN--FAVIYLVDIDE--VPDFNKMYELYDPPTVMFFFR 77 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHH-ccC--ceEEEEEECCC--CHHHHHHcCCCCCCEEEEEEC
Confidence 34555553 45799999999999999999999999966 443 47899999999 999999999999999999999
Q ss_pred CeeeeeecCC
Q psy14086 294 GVRTAEYNGS 303 (324)
Q Consensus 294 g~~~~~~~g~ 303 (324)
|+.+....|.
T Consensus 78 G~~v~~~~G~ 87 (114)
T cd02954 78 NKHMKIDLGT 87 (114)
T ss_pred CEEEEEEcCC
Confidence 9988777664
No 59
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.73 E-value=2.5e-17 Score=117.38 Aligned_cols=92 Identities=29% Similarity=0.582 Sum_probs=80.3
Q ss_pred ccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecC
Q psy14086 218 NFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNG 294 (324)
Q Consensus 218 ~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g 294 (324)
+|++.+. +++++|.||++||++|+.+.|.+++++.. +.. .+.++.+|++. ..+++++|+|.++|++++|++|
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~-~~~--~~~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~~g 76 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEE-YQG--QFVLAKVNCDA--QPQIAQQFGVQALPTVYLFAAG 76 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHH-hCC--cEEEEEEeccC--CHHHHHHcCCCCCCEEEEEeCC
Confidence 3555552 34899999999999999999999999955 544 58999999999 8999999999999999999999
Q ss_pred eeeeeecCCCCHHHHHHHHH
Q psy14086 295 VRTAEYNGSRDLEELYQFIL 314 (324)
Q Consensus 295 ~~~~~~~g~~~~~~l~~fi~ 314 (324)
+.+..+.|..+.+.|.+||+
T Consensus 77 ~~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 77 QPVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred EEeeeecCCCCHHHHHHHhC
Confidence 88888999999999999873
No 60
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.73 E-value=3.1e-17 Score=119.01 Aligned_cols=100 Identities=42% Similarity=0.887 Sum_probs=88.8
Q ss_pred ceEcChhhHHHHhcC-C-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-chhhhhhCCccccceEEE
Q psy14086 83 LVELTEESFEKYVSL-G-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-HRSICQSFDIKSYPTLLW 159 (324)
Q Consensus 83 ~~~l~~~~f~~~~~~-~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-~~~~~~~~~i~~~P~~~~ 159 (324)
+.+++.++|+..+.. + ++++.||++||++|+++.+.|.++++.++...++.++.+|++. ++.++++|+|+++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 567888999888742 3 6899999999999999999999999999744479999999999 899999999999999999
Q ss_pred EeCC-eEeeeecCCCCHHHHHHHH
Q psy14086 160 IESG-KKLDKFQGSRTLETLVNYV 182 (324)
Q Consensus 160 ~~~g-~~~~~~~g~~~~~~i~~fi 182 (324)
|++| .....|.|..+.++|.+||
T Consensus 82 ~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCCccccCCccCHHHHHhhC
Confidence 9886 5667799999999999985
No 61
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.73 E-value=7.9e-17 Score=115.84 Aligned_cols=96 Identities=19% Similarity=0.460 Sum_probs=83.7
Q ss_pred cChhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCe
Q psy14086 86 LTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGK 164 (324)
Q Consensus 86 l~~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~ 164 (324)
-+.++|+..+.+ ++++|+||++||++|+.+.|.+++++..+++ ..+.|+.+|++ +..++++|+|+++|++++|++|+
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~-~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD-DLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC-CcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCE
Confidence 467888888744 4689999999999999999999999999974 24789999998 77899999999999999999999
Q ss_pred EeeeecCCCCHHHHHHHHHh
Q psy14086 165 KLDKFQGSRTLETLVNYVSK 184 (324)
Q Consensus 165 ~~~~~~g~~~~~~i~~fi~~ 184 (324)
...+..|. +.+.+.++|.+
T Consensus 83 ~~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 83 LVAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred EEEEEecC-ChHHHHHHHhh
Confidence 88888885 88899988865
No 62
>PRK10996 thioredoxin 2; Provisional
Probab=99.73 E-value=5.8e-17 Score=123.04 Aligned_cols=105 Identities=24% Similarity=0.547 Sum_probs=92.9
Q ss_pred CCCeeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086 208 PEPVVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP 286 (324)
Q Consensus 208 ~~~v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P 286 (324)
...+..++..+|++.+.+ ++++|.||++||++|+.+.|.+.+++.+ +.. ++.|+.+|++. +++++++|+|.++|
T Consensus 34 ~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~-~~~--~v~~~~vd~~~--~~~l~~~~~V~~~P 108 (139)
T PRK10996 34 DGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAE-RSG--KVRFVKVNTEA--ERELSARFRIRSIP 108 (139)
T ss_pred CCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHH-hCC--CeEEEEEeCCC--CHHHHHhcCCCccC
Confidence 456777888889988854 5799999999999999999999999965 444 69999999998 89999999999999
Q ss_pred eEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086 287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317 (324)
Q Consensus 287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~ 317 (324)
++++|++|+.+..+.|..+.+.|.+||.+.+
T Consensus 109 tlii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 109 TIMIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 9999999999888999999999999998753
No 63
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.73 E-value=3.7e-17 Score=118.22 Aligned_cols=97 Identities=33% Similarity=0.787 Sum_probs=82.6
Q ss_pred ccccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCee
Q psy14086 217 ENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVR 296 (324)
Q Consensus 217 ~~~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~ 296 (324)
++|++..+++.++|.||++||++|+.+.|.|++++.++......+.++.+|++. .+.++++++|.++|++++|++|.
T Consensus 7 ~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~I~~~Pt~~l~~~~~- 83 (104)
T cd03000 7 DSFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA--YSSIASEFGVRGYPTIKLLKGDL- 83 (104)
T ss_pred hhhhhhccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc--CHhHHhhcCCccccEEEEEcCCC-
Confidence 567776667799999999999999999999999996643222358999999998 88999999999999999997764
Q ss_pred eeeecCCCCHHHHHHHHHhh
Q psy14086 297 TAEYNGSRDLEELYQFILKH 316 (324)
Q Consensus 297 ~~~~~g~~~~~~l~~fi~~~ 316 (324)
...+.|..+.+.|.+|+++.
T Consensus 84 ~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 84 AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred ceeecCCCCHHHHHHHHHhh
Confidence 45689999999999999864
No 64
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.73 E-value=8.2e-17 Score=115.92 Aligned_cols=94 Identities=17% Similarity=0.294 Sum_probs=80.5
Q ss_pred ChhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch---hhhhhCCccccceEEEE
Q psy14086 87 TEESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR---SICQSFDIKSYPTLLWI 160 (324)
Q Consensus 87 ~~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~---~~~~~~~i~~~P~~~~~ 160 (324)
+.++|++.+. +++++|.||++||++|+.+.|.++++++.+ . .+.|+.+|++++. .++++|+|+++|++++|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~--~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 78 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N--DVVFLLVNGDENDSTMELCRREKIIEVPHFLFY 78 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C--CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEE
Confidence 4567777773 457899999999999999999999999999 3 6999999998764 79999999999999999
Q ss_pred eCCeEeeeecCCCCHHHHHHHHHh
Q psy14086 161 ESGKKLDKFQGSRTLETLVNYVSK 184 (324)
Q Consensus 161 ~~g~~~~~~~g~~~~~~i~~fi~~ 184 (324)
++|+...++.|. ....|.+.+..
T Consensus 79 ~~G~~v~~~~G~-~~~~l~~~~~~ 101 (103)
T cd02985 79 KDGEKIHEEEGI-GPDELIGDVLY 101 (103)
T ss_pred eCCeEEEEEeCC-CHHHHHHHHHh
Confidence 999998889995 56777776654
No 65
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.73 E-value=3.1e-17 Score=118.81 Aligned_cols=100 Identities=45% Similarity=0.896 Sum_probs=86.5
Q ss_pred CeeEeccccccccccC--CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccce
Q psy14086 210 PVVSLTSENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287 (324)
Q Consensus 210 ~v~~l~~~~~~~~~~~--~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~ 287 (324)
+|..|++++|++.+.+ ++++|.||++||++|+.+.|.|.+++.. +....++.++.+|++. + +++..+++.++|+
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~~~~id~~~--~-~~~~~~~~~~~Pt 76 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEK-LKGDDNVVIAKMDATA--N-DVPSEFVVDGFPT 76 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHH-hcCCCCEEEEEEeCcc--h-hhhhhccCCCCCE
Confidence 3788999999988754 5899999999999999999999999955 5544579999999998 4 5778899999999
Q ss_pred EEEEecCe--eeeeecCCCCHHHHHHHH
Q psy14086 288 IYVYKNGV--RTAEYNGSRDLEELYQFI 313 (324)
Q Consensus 288 l~~~~~g~--~~~~~~g~~~~~~l~~fi 313 (324)
+++|++|+ ....|.|..+.+.|.+||
T Consensus 77 ~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 77 ILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 99999887 566799999999999986
No 66
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.73 E-value=4e-17 Score=118.20 Aligned_cols=102 Identities=37% Similarity=0.782 Sum_probs=87.9
Q ss_pred eeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEE
Q psy14086 211 VVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIY 289 (324)
Q Consensus 211 v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~ 289 (324)
|..+++.+|++.+++ ++++|.||++||++|+.+.|.+++++.. +.....+.++.+|++...+..++++++|.++|+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~-~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATE-LKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHH-HhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 667888888887755 4799999999999999999999999955 44333688999999875568899999999999999
Q ss_pred EEecCeeeeeecCCCCHHHHHHHH
Q psy14086 290 VYKNGVRTAEYNGSRDLEELYQFI 313 (324)
Q Consensus 290 ~~~~g~~~~~~~g~~~~~~l~~fi 313 (324)
+|++|+.+..|.|..+.+.+.+||
T Consensus 81 ~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCCeeEEeCCCCCHHHHHhhC
Confidence 999998888899999999999885
No 67
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.72 E-value=3.9e-17 Score=118.09 Aligned_cols=98 Identities=36% Similarity=0.758 Sum_probs=86.0
Q ss_pred eeEeccccccccccC-C-cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceE
Q psy14086 211 VVSLTSENFNDVIKS-G-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI 288 (324)
Q Consensus 211 v~~l~~~~~~~~~~~-~-~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l 288 (324)
|..+++++|.+.+.+ + +++|.||++||++|+.+.|.|.+++++ +.. .+.++.+|++. ++++++.++|+++|++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~-~~~--~~~~~~id~~~--~~~~~~~~~i~~~P~~ 76 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKA-LKG--IVKVGAVDADV--HQSLAQQYGVRGFPTI 76 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHH-hcC--CceEEEEECcc--hHHHHHHCCCCccCEE
Confidence 677888999887743 3 599999999999999999999999966 444 69999999998 8999999999999999
Q ss_pred EEEecC-eeeeeecCCCCHHHHHHHH
Q psy14086 289 YVYKNG-VRTAEYNGSRDLEELYQFI 313 (324)
Q Consensus 289 ~~~~~g-~~~~~~~g~~~~~~l~~fi 313 (324)
++|++| .....|.|.++.++|.+|+
T Consensus 77 ~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 77 KVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EEECCCCcceeecCCCCCHHHHHHHh
Confidence 999988 4466799999999999997
No 68
>KOG4277|consensus
Probab=99.72 E-value=1.1e-15 Score=123.95 Aligned_cols=258 Identities=19% Similarity=0.256 Sum_probs=163.5
Q ss_pred CCCceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceE
Q psy14086 6 EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVE 85 (324)
Q Consensus 6 ~~~~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (324)
-...|+++++||+.-+.++.+|||++||||++|+++. .+.|+|+|+.++|++|..+..++ -+..
T Consensus 75 ig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~---a~dYRG~R~Kd~iieFAhR~a~a-------------iI~p 138 (468)
T KOG4277|consen 75 IGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDH---AIDYRGGREKDAIIEFAHRCAAA-------------IIEP 138 (468)
T ss_pred cCCceeecccccccchhhHhhhccCCCceEEEecCCe---eeecCCCccHHHHHHHHHhcccc-------------eeee
Confidence 3557999999999999999999999999999999655 88999999999999999998876 5666
Q ss_pred cChhh--HHHHhcCC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhh-CCccccceEEEEe
Q psy14086 86 LTEES--FEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQS-FDIKSYPTLLWIE 161 (324)
Q Consensus 86 l~~~~--f~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~-~~i~~~P~~~~~~ 161 (324)
++++. |..+-.+. +.+|+|-+...+ +...+.++|.. ++.+++.-. ....++-. -.....|.+.+|+
T Consensus 139 i~enQ~~fehlq~Rhq~ffVf~Gtge~P----L~d~fidAASe-----~~~~a~FfS-aseeVaPe~~~~kempaV~VFK 208 (468)
T KOG4277|consen 139 INENQIEFEHLQARHQPFFVFFGTGEGP----LFDAFIDAASE-----KFSVARFFS-ASEEVAPEENDAKEMPAVAVFK 208 (468)
T ss_pred cChhHHHHHHHhhccCceEEEEeCCCCc----HHHHHHHHhhh-----heeeeeeec-cccccCCcccchhhccceEEEc
Confidence 66643 44444444 556666544433 33345555544 344443322 22223333 3455789999998
Q ss_pred CCeEeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccCC-cEEEEEeCCC----
Q psy14086 162 SGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSG-TVFIKFFAPW---- 236 (324)
Q Consensus 162 ~g~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~~~v~f~~~~---- 236 (324)
+..-....+ .+.+++.+||++.-- +.....++-.+.++-..+ .|++......
T Consensus 209 Detf~i~de--~dd~dLseWinRERf---------------------~~fLa~dgflL~EiG~sGKLVaLaVidEkhk~n 265 (468)
T KOG4277|consen 209 DETFEIEDE--GDDEDLSEWINRERF---------------------PGFLAADGFLLAEIGASGKLVALAVIDEKHKFN 265 (468)
T ss_pred cceeEEEec--CchhHHHHHHhHhhc---------------------cchhhcccchHHHhCcCCceEEEEEeccccccC
Confidence 764443333 356889999987532 223334444455554443 3433333322
Q ss_pred -ChhhhhhhHhHHHHHHHhhcC---CCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCe-eeeeec---CCCCHHH
Q psy14086 237 -CGHCKRLAPTWEELGTKLLDN---KHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGV-RTAEYN---GSRDLEE 308 (324)
Q Consensus 237 -c~~C~~~~~~~~~~a~~~~~~---~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~-~~~~~~---g~~~~~~ 308 (324)
..+-+.+..+.+++|+++... ..++.|+++|.....+.-+. .--+.|++++|.-.+ .+..-+ ...+.++
T Consensus 266 ns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~~nqilM---~als~P~l~i~NtsnqeYfLse~d~qiknied 342 (468)
T KOG4277|consen 266 NSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDLANQILM---AALSEPHLFIFNTSNQEYFLSEDDPQIKNIED 342 (468)
T ss_pred CcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhHHHHHHHH---HhhcCCeEEEEecCchheeeccCChhhhhHHH
Confidence 234466788888998764322 13599999996542122111 122689999997544 332211 2257889
Q ss_pred HHHHHHh
Q psy14086 309 LYQFILK 315 (324)
Q Consensus 309 l~~fi~~ 315 (324)
+.+||++
T Consensus 343 ilqFien 349 (468)
T KOG4277|consen 343 ILQFIEN 349 (468)
T ss_pred HHHHHhc
Confidence 9999976
No 69
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.72 E-value=4e-17 Score=117.76 Aligned_cols=100 Identities=46% Similarity=0.941 Sum_probs=86.5
Q ss_pred eccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEe
Q psy14086 214 LTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK 292 (324)
Q Consensus 214 l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~ 292 (324)
|++++|++.+.. ++++|.||++||+.|+.+.+.|++++.. +....++.++.+|++. +..++++++|+++|++++|+
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~--~~~~~~~~~i~~~P~~~~~~ 77 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKE-LKGDPDIVLAKVDATA--EKDLASRFGVSGFPTIKFFP 77 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHH-hccCCceEEEEEEccc--hHHHHHhCCCCcCCEEEEec
Confidence 456777777654 4799999999999999999999999955 5544469999999999 89999999999999999999
Q ss_pred cCeeeeeecCCCCHHHHHHHHHhh
Q psy14086 293 NGVRTAEYNGSRDLEELYQFILKH 316 (324)
Q Consensus 293 ~g~~~~~~~g~~~~~~l~~fi~~~ 316 (324)
+|+....|.|..+.+.|.+||.++
T Consensus 78 ~~~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 78 KGKKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred CCCcceeecCCCCHHHHHHHHHhc
Confidence 887677899999999999999875
No 70
>KOG0912|consensus
Probab=99.72 E-value=7e-16 Score=125.30 Aligned_cols=255 Identities=20% Similarity=0.268 Sum_probs=167.1
Q ss_pred CceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceEcC
Q psy14086 8 SRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELT 87 (324)
Q Consensus 8 ~~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (324)
..+.+|.|||+++..++.+|.|..|||+++|++|. .-..+|+|.|+++++.+|+++++.. .+.++.
T Consensus 49 ~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~-~~~rEYRg~RsVeaL~efi~kq~s~-------------~i~Ef~ 114 (375)
T KOG0912|consen 49 GKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGE-MMKREYRGQRSVEALIEFIEKQLSD-------------PINEFE 114 (375)
T ss_pred cceEEEEcccchhhHHhhhhccccCceeeeeeccc-hhhhhhccchhHHHHHHHHHHHhcc-------------HHHHHH
Confidence 57899999999999999999999999999999876 5566899999999999999999864 343332
Q ss_pred -hhhHHHHhc-CC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCe
Q psy14086 88 -EESFEKYVS-LG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGK 164 (324)
Q Consensus 88 -~~~f~~~~~-~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~ 164 (324)
.+.+..... ++ .++.+|-....+. ...++++|..+++ ...|..-=. ++.....-.+.+ +++|+++.
T Consensus 115 sl~~l~n~~~p~K~~vIgyF~~kdspe----y~~~~kva~~lr~--dc~f~V~~g----D~~~~~~~~~~~-~~~f~pd~ 183 (375)
T KOG0912|consen 115 SLDQLQNLDIPSKRTVIGYFPSKDSPE----YDNLRKVASLLRD--DCVFLVGFG----DLLKPHEPPGKN-ILVFDPDH 183 (375)
T ss_pred hHHHHHhhhccccceEEEEeccCCCch----HHHHHHHHHHHhh--ccEEEeecc----ccccCCCCCCCc-eEEeCCCc
Confidence 234444443 33 3455555455555 3467788888887 555543211 111222222333 56666643
Q ss_pred E--eeeecCC-CCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccCC-cEEEEEeCCCChhh
Q psy14086 165 K--LDKFQGS-RTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHC 240 (324)
Q Consensus 165 ~--~~~~~g~-~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~~~v~f~~~~c~~C 240 (324)
. ...|.|. .+.+.+..||.+..- +-|+++|-++.+++.+++ |.+|.|+.+.....
T Consensus 184 ~~~~~~f~G~~~nf~el~~Wi~dKcv---------------------pLVREiTFeN~EELtEEGlPflILf~~kdD~~s 242 (375)
T KOG0912|consen 184 SEPNHEFLGSMTNFDELKQWIQDKCV---------------------PLVREITFENAEELTEEGLPFLILFRKKDDKES 242 (375)
T ss_pred CCcCcccccccccHHHHHHHHHhcch---------------------hhhhhhhhccHHHHhhcCCceEEEEecCCcccH
Confidence 2 2358997 578999999999887 559999999999999776 89999998754422
Q ss_pred hhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCC--CccceE--------EEEecCeeeeeecCCCCHHHHH
Q psy14086 241 KRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGV--DGFPSI--------YVYKNGVRTAEYNGSRDLEELY 310 (324)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i--~~~P~l--------~~~~~g~~~~~~~g~~~~~~l~ 310 (324)
....-..+++++......+.+...|+.. -.-....+|- ...|.| ++|++++.+ ..+..|.
T Consensus 243 --~k~F~~aI~ReL~~e~~~in~l~ADG~~--f~hpL~HlgKs~~DLPviaIDsF~Hmylfp~f~di------~~pGkLk 312 (375)
T KOG0912|consen 243 --EKIFKNAIARELDDETLAINFLTADGKV--FKHPLRHLGKSPDDLPVIAIDSFRHMYLFPDFNDI------NIPGKLK 312 (375)
T ss_pred --HHHHHHHHHHHhhhhhhccceeecCcce--ecchHHHhCCCcccCcEEEeeccceeeecCchhhh------cCccHHH
Confidence 2222245565555444347777777655 3322233332 245544 444444332 2344788
Q ss_pred HHHHhhcc
Q psy14086 311 QFILKHKV 318 (324)
Q Consensus 311 ~fi~~~~~ 318 (324)
+||.+..+
T Consensus 313 qFv~DL~s 320 (375)
T KOG0912|consen 313 QFVADLHS 320 (375)
T ss_pred HHHHHHhC
Confidence 89887543
No 71
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.72 E-value=9.4e-17 Score=114.34 Aligned_cols=96 Identities=17% Similarity=0.211 Sum_probs=85.4
Q ss_pred CeeEeccccccccccC-CcEEEEEeCCC--ChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086 210 PVVSLTSENFNDVIKS-GTVFIKFFAPW--CGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP 286 (324)
Q Consensus 210 ~v~~l~~~~~~~~~~~-~~~~v~f~~~~--c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P 286 (324)
....++..+|++.+.. ++++|.||++| |++|+.+.|.+++++.+ +.. .+.|+.+|++. +++++.+|+|.++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e-~~~--~v~f~kVdid~--~~~la~~f~V~sIP 85 (111)
T cd02965 11 GWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKA-FPG--RFRAAVVGRAD--EQALAARFGVLRTP 85 (111)
T ss_pred CCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHH-CCC--cEEEEEEECCC--CHHHHHHcCCCcCC
Confidence 3667888999988865 68999999997 99999999999999965 544 58899999999 89999999999999
Q ss_pred eEEEEecCeeeeeecCCCCHHHHH
Q psy14086 287 SIYVYKNGVRTAEYNGSRDLEELY 310 (324)
Q Consensus 287 ~l~~~~~g~~~~~~~g~~~~~~l~ 310 (324)
|+++|++|+.+..+.|..+.+++.
T Consensus 86 Tli~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 86 ALLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEEEEECCEEEEEEeCccCHHHHh
Confidence 999999999998899988877764
No 72
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.72 E-value=1.7e-16 Score=114.29 Aligned_cols=98 Identities=32% Similarity=0.686 Sum_probs=88.1
Q ss_pred cChhhHHHHhcC--CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCC
Q psy14086 86 LTEESFEKYVSL--GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG 163 (324)
Q Consensus 86 l~~~~f~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g 163 (324)
++.++|.+.+.+ ++++++||++||++|+.+.+.++++++.+.+ ++.|+.+|++.+..++++|+|..+|+++++++|
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 78 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG 78 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC
Confidence 356778777633 3789999999999999999999999999976 799999999999999999999999999999999
Q ss_pred eEeeeecCCCCHHHHHHHHHhh
Q psy14086 164 KKLDKFQGSRTLETLVNYVSKM 185 (324)
Q Consensus 164 ~~~~~~~g~~~~~~i~~fi~~~ 185 (324)
+...++.|..+.+.|.+||++.
T Consensus 79 ~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 79 KEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred cEeeeecCCCCHHHHHHHHHhh
Confidence 8888889999999999999875
No 73
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.71 E-value=1.9e-16 Score=120.68 Aligned_cols=91 Identities=22% Similarity=0.524 Sum_probs=81.7
Q ss_pred CCCceEcChhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccc---
Q psy14086 80 NEGLVELTEESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKS--- 153 (324)
Q Consensus 80 ~~~~~~l~~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~--- 153 (324)
...+.+++.++|++.+. .++++|.||++||++|+.+.|.|+++++++.+ .++.|+.||+++++.++++|+|++
T Consensus 27 ~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~-~~v~f~~VDvd~~~~la~~~~V~~~~~ 105 (152)
T cd02962 27 PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN-NNLKFGKIDIGRFPNVAEKFRVSTSPL 105 (152)
T ss_pred CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc-CCeEEEEEECCCCHHHHHHcCceecCC
Confidence 46789999999998873 23689999999999999999999999999864 259999999999999999999988
Q ss_pred ---cceEEEEeCCeEeeeecC
Q psy14086 154 ---YPTLLWIESGKKLDKFQG 171 (324)
Q Consensus 154 ---~P~~~~~~~g~~~~~~~g 171 (324)
+||+++|++|+...++.|
T Consensus 106 v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 106 SKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred cCCCCEEEEEECCEEEEEEec
Confidence 999999999999888886
No 74
>KOG0912|consensus
Probab=99.71 E-value=1.6e-16 Score=128.91 Aligned_cols=197 Identities=27% Similarity=0.477 Sum_probs=136.7
Q ss_pred cChhhHHHHhcCC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC---CCeEEEEeccccchhhhhhCCccccceEEEEe
Q psy14086 86 LTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTE---EDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161 (324)
Q Consensus 86 l~~~~f~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~---~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~ 161 (324)
++.+|++..+... .++|.|||.||+.++.++|.|.++|..++.+ +++.++.|||+.+..++.+|.|..|||+-+|+
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 3556777777444 5799999999999999999999999988652 58999999999999999999999999999999
Q ss_pred CCeEee-eecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecccc-cccccc-C-CcEEEEEeCCCC
Q psy14086 162 SGKKLD-KFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSEN-FNDVIK-S-GTVFIKFFAPWC 237 (324)
Q Consensus 162 ~g~~~~-~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~~-~-~~~~v~f~~~~c 237 (324)
+|.... .|.|.++++.+.+||+..++ .++.+....+ +..... + +.++.+|-....
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s---------------------~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kds 139 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLS---------------------DPINEFESLDQLQNLDIPSKRTVIGYFPSKDS 139 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhc---------------------cHHHHHHhHHHHHhhhccccceEEEEeccCCC
Confidence 997654 69999999999999999887 2344333322 333332 2 356666664433
Q ss_pred hhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCee-e-eeecCC-CCHHHHHHHHH
Q psy14086 238 GHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVR-T-AEYNGS-RDLEELYQFIL 314 (324)
Q Consensus 238 ~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~-~-~~~~g~-~~~~~l~~fi~ 314 (324)
+ -...+.++| .+++..-.+.++.-|... ...-.+.+ +++|+.+.. . ..|.|. .+.+.+.+||.
T Consensus 140 p----ey~~~~kva-~~lr~dc~f~V~~gD~~~--------~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~ 205 (375)
T KOG0912|consen 140 P----EYDNLRKVA-SLLRDDCVFLVGFGDLLK--------PHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQ 205 (375)
T ss_pred c----hHHHHHHHH-HHHhhccEEEeecccccc--------CCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHH
Confidence 2 334556677 445553333333222221 22222333 445544422 2 268998 46899999998
Q ss_pred hhc
Q psy14086 315 KHK 317 (324)
Q Consensus 315 ~~~ 317 (324)
+.+
T Consensus 206 dKc 208 (375)
T KOG0912|consen 206 DKC 208 (375)
T ss_pred hcc
Confidence 754
No 75
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.70 E-value=1.3e-16 Score=114.71 Aligned_cols=98 Identities=42% Similarity=0.950 Sum_probs=88.1
Q ss_pred EcChhhHHHHhcCC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCC
Q psy14086 85 ELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG 163 (324)
Q Consensus 85 ~l~~~~f~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g 163 (324)
.++.++|.+.+.++ +++|+||++||++|+.+.+.|.++++.++....+.|+.+|++.+..++++|+|+++|++++++++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 57888999988665 78999999999999999999999999995223899999999999999999999999999999987
Q ss_pred -eEeeeecCCCCHHHHHHHH
Q psy14086 164 -KKLDKFQGSRTLETLVNYV 182 (324)
Q Consensus 164 -~~~~~~~g~~~~~~i~~fi 182 (324)
....+|.|..+.++|.+|+
T Consensus 82 ~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 82 SKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CcccccCCCCcCHHHHHhhC
Confidence 7777899999999998885
No 76
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.70 E-value=9.1e-17 Score=117.06 Aligned_cols=101 Identities=25% Similarity=0.635 Sum_probs=83.3
Q ss_pred CeeEecccccccccc----CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhh-hcCCCc
Q psy14086 210 PVVSLTSENFNDVIK----SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCN-QEGVDG 284 (324)
Q Consensus 210 ~v~~l~~~~~~~~~~----~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~-~~~i~~ 284 (324)
.|..++.++|+..+. +++++|.||++||++|+.+.|.|.+++.. +.. .++.++.+|++.. +..++. .+++++
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~-~~~-~~~~~~~vd~d~~-~~~~~~~~~~v~~ 78 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEK-LAG-SNVKVAKFNADGE-QREFAKEELQLKS 78 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHH-hcc-CCeEEEEEECCcc-chhhHHhhcCCCc
Confidence 478889999998874 35899999999999999999999999966 442 2599999999861 356665 599999
Q ss_pred cceEEEEecC-eeeeeecCC-CCHHHHHHHH
Q psy14086 285 FPSIYVYKNG-VRTAEYNGS-RDLEELYQFI 313 (324)
Q Consensus 285 ~P~l~~~~~g-~~~~~~~g~-~~~~~l~~fi 313 (324)
+||+++|++| .....|.|. ++.+.|.+||
T Consensus 79 ~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 79 FPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999999766 456689995 8999999986
No 77
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.70 E-value=1.3e-16 Score=114.88 Aligned_cols=93 Identities=25% Similarity=0.424 Sum_probs=77.5
Q ss_pred ccccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccc---hhhhhhcCCCccceEE
Q psy14086 216 SENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS---KDLCNQEGVDGFPSIY 289 (324)
Q Consensus 216 ~~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~---~~~~~~~~i~~~P~l~ 289 (324)
.++|++.+. +++++|.||++||++|+.+.|.+++++.+ + . .+.|+.+|++. + .+++++++|+++||++
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~-~-~--~v~~~~vd~d~--~~~~~~l~~~~~V~~~Pt~~ 76 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRT-C-N--DVVFLLVNGDE--NDSTMELCRREKIIEVPHFL 76 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHH-C-C--CCEEEEEECCC--ChHHHHHHHHcCCCcCCEEE
Confidence 345666653 46899999999999999999999999966 4 3 58999999987 5 3789999999999999
Q ss_pred EEecCeeeeeecCCCCHHHHHHHHHh
Q psy14086 290 VYKNGVRTAEYNGSRDLEELYQFILK 315 (324)
Q Consensus 290 ~~~~g~~~~~~~g~~~~~~l~~fi~~ 315 (324)
+|++|+.+..+.|. ..++|.+-|..
T Consensus 77 ~~~~G~~v~~~~G~-~~~~l~~~~~~ 101 (103)
T cd02985 77 FYKDGEKIHEEEGI-GPDELIGDVLY 101 (103)
T ss_pred EEeCCeEEEEEeCC-CHHHHHHHHHh
Confidence 99999998899995 66777776654
No 78
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.69 E-value=3.5e-16 Score=114.71 Aligned_cols=87 Identities=28% Similarity=0.460 Sum_probs=78.4
Q ss_pred CceEcChhhHHHHhcC----CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceE
Q psy14086 82 GLVELTEESFEKYVSL----GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTL 157 (324)
Q Consensus 82 ~~~~l~~~~f~~~~~~----~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~ 157 (324)
.+.+++.++|.+.+.+ .+++|.||++||++|+.+.|.+++++.++.+ +.|++||++++ .++++|+|+++|++
T Consensus 5 ~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~---v~f~~vd~~~~-~l~~~~~i~~~Pt~ 80 (113)
T cd02957 5 EVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE---TKFVKINAEKA-FLVNYLDIKVLPTL 80 (113)
T ss_pred eEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC---cEEEEEEchhh-HHHHhcCCCcCCEE
Confidence 5778999999888743 4679999999999999999999999999864 89999999988 99999999999999
Q ss_pred EEEeCCeEeeeecCC
Q psy14086 158 LWIESGKKLDKFQGS 172 (324)
Q Consensus 158 ~~~~~g~~~~~~~g~ 172 (324)
++|++|+.+.++.|.
T Consensus 81 ~~f~~G~~v~~~~G~ 95 (113)
T cd02957 81 LVYKNGELIDNIVGF 95 (113)
T ss_pred EEEECCEEEEEEecH
Confidence 999999998888764
No 79
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.69 E-value=3.3e-16 Score=112.60 Aligned_cols=95 Identities=20% Similarity=0.442 Sum_probs=79.7
Q ss_pred ccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEec
Q psy14086 215 TSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKN 293 (324)
Q Consensus 215 ~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~ 293 (324)
+.++|++.+.+ ++++|.||++||++|+.+.|.+++++.+ +.. ..+.|+.+|++. .+++++|+|+++||+++|++
T Consensus 6 ~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~-~~~-~~~~~~~vd~d~---~~~~~~~~v~~~Pt~~~~~~ 80 (102)
T cd02948 6 NQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNE-LGD-DLLHFATAEADT---IDTLKRYRGKCEPTFLFYKN 80 (102)
T ss_pred CHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHH-cCC-CcEEEEEEeCCC---HHHHHHcCCCcCcEEEEEEC
Confidence 45667777754 5799999999999999999999999865 432 247899999885 67889999999999999999
Q ss_pred CeeeeeecCCCCHHHHHHHHHh
Q psy14086 294 GVRTAEYNGSRDLEELYQFILK 315 (324)
Q Consensus 294 g~~~~~~~g~~~~~~l~~fi~~ 315 (324)
|+.+....|. +.+.+.++|.+
T Consensus 81 g~~~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 81 GELVAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred CEEEEEEecC-ChHHHHHHHhh
Confidence 9988888885 88999998864
No 80
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.68 E-value=8.4e-16 Score=112.22 Aligned_cols=98 Identities=21% Similarity=0.355 Sum_probs=83.7
Q ss_pred CceEcCh-hhHHHHhc-CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086 82 GLVELTE-ESFEKYVS-LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW 159 (324)
Q Consensus 82 ~~~~l~~-~~f~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~ 159 (324)
.+..++. ++|.+.+. .++++|.||++||++|+.+.|.++++++++.+ +.|+.+|+++.+.++++|+|..+|++++
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~---i~f~~Vd~~~~~~l~~~~~v~~vPt~l~ 81 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE---TKFIKVNAEKAPFLVEKLNIKVLPTVIL 81 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC---CEEEEEEcccCHHHHHHCCCccCCEEEE
Confidence 4666766 88888884 45789999999999999999999999999864 8999999999999999999999999999
Q ss_pred EeCCeEeeeecCC--------CCHHHHHHHH
Q psy14086 160 IESGKKLDKFQGS--------RTLETLVNYV 182 (324)
Q Consensus 160 ~~~g~~~~~~~g~--------~~~~~i~~fi 182 (324)
|++|+.+.++.|. .+.+++..|+
T Consensus 82 fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 82 FKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 9999887766543 4566666665
No 81
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.68 E-value=4.4e-15 Score=119.13 Aligned_cols=156 Identities=22% Similarity=0.315 Sum_probs=133.8
Q ss_pred ceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCC-CChHHHHHHHHhhhcCCCCCCCCCCCCCCCceEcC
Q psy14086 9 RVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGT-RDLPTLTNFINEQISETPKEPSDKPIVNEGLVELT 87 (324)
Q Consensus 9 ~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (324)
.+.|+.+. +.++|++++|.. |+|++|+.++ .+...|.|. .+.++|..|+....-| .+..+|
T Consensus 22 ~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~-~~~~~y~~~~~~~~~l~~fI~~~~~P-------------~v~~~t 83 (184)
T PF13848_consen 22 DYQFGVTF---NEELAKKYGIKE-PTIVVYKKFD-EKPVVYDGDKFTPEELKKFIKKNSFP-------------LVPELT 83 (184)
T ss_dssp TSEEEEEE----HHHHHHCTCSS-SEEEEEECTT-TSEEEESSSTTSHHHHHHHHHHHSST-------------SCEEES
T ss_pred CcEEEEEc---HHHHHHHhCCCC-CcEEEeccCC-CCceecccccCCHHHHHHHHHHhccc-------------cccccc
Confidence 47888887 778999999999 9999999865 567899998 8999999999999877 899999
Q ss_pred hhhHHHHhcCC-C-EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCcc--ccceEEEEeC-
Q psy14086 88 EESFEKYVSLG-N-HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIK--SYPTLLWIES- 162 (324)
Q Consensus 88 ~~~f~~~~~~~-~-~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~--~~P~~~~~~~- 162 (324)
.+++..+...+ + +++.|..........+...++.+|.++++ ++.|+.+|+...+.+++.+|++ .+|+++++..
T Consensus 84 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~ 161 (184)
T PF13848_consen 84 PENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG--KINFVYVDADDFPRLLKYFGIDEDDLPALVIFDSN 161 (184)
T ss_dssp TTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT--TSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETT
T ss_pred hhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC--eEEEEEeehHHhHHHHHHcCCCCccCCEEEEEECC
Confidence 99999999776 4 56777777778889999999999999998 8999999999889999999998 8999999984
Q ss_pred -CeEeeeecCCCCHHHHHHHHHh
Q psy14086 163 -GKKLDKFQGSRTLETLVNYVSK 184 (324)
Q Consensus 163 -g~~~~~~~g~~~~~~i~~fi~~ 184 (324)
++....+.|..+.++|.+|+++
T Consensus 162 ~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 162 KGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TSEEEE--SSCGCHHHHHHHHHH
T ss_pred CCcEEcCCCCCCCHHHHHHHhcC
Confidence 3333334788999999999974
No 82
>KOG0907|consensus
Probab=99.68 E-value=3.9e-16 Score=111.27 Aligned_cols=83 Identities=29% Similarity=0.694 Sum_probs=75.1
Q ss_pred CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHH
Q psy14086 98 GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLET 177 (324)
Q Consensus 98 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~ 177 (324)
++++|.||++||++|+.+.|.+.+++.+|.+ +.|++||+++...+++.++|+.+||++++++|+...++.|.. .+.
T Consensus 22 kliVvdF~a~wCgPCk~i~P~~~~La~~y~~---v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~-~~~ 97 (106)
T KOG0907|consen 22 KLVVVDFYATWCGPCKAIAPKFEKLAEKYPD---VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGAN-KAE 97 (106)
T ss_pred CeEEEEEECCCCcchhhhhhHHHHHHHHCCC---CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCC-HHH
Confidence 5678999999999999999999999999986 999999999999999999999999999999999999999884 447
Q ss_pred HHHHHHh
Q psy14086 178 LVNYVSK 184 (324)
Q Consensus 178 i~~fi~~ 184 (324)
+.+.+..
T Consensus 98 l~~~i~~ 104 (106)
T KOG0907|consen 98 LEKKIAK 104 (106)
T ss_pred HHHHHHh
Confidence 7766654
No 83
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.68 E-value=4.1e-16 Score=118.88 Aligned_cols=91 Identities=23% Similarity=0.501 Sum_probs=79.3
Q ss_pred CCCeeEeccccccccccC---CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCc
Q psy14086 208 PEPVVSLTSENFNDVIKS---GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG 284 (324)
Q Consensus 208 ~~~v~~l~~~~~~~~~~~---~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~ 284 (324)
+..+..++.++|++.+.. ++++|.||++||++|+.+.|.+++++.+ +.. .++.|+.+|+++ +++++++|+|++
T Consensus 27 ~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~-~~~-~~v~f~~VDvd~--~~~la~~~~V~~ 102 (152)
T cd02962 27 PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLK-YNN-NNLKFGKIDIGR--FPNVAEKFRVST 102 (152)
T ss_pred CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHH-ccc-CCeEEEEEECCC--CHHHHHHcCcee
Confidence 467899999999987742 4799999999999999999999999965 432 259999999999 899999999988
Q ss_pred ------cceEEEEecCeeeeeecC
Q psy14086 285 ------FPSIYVYKNGVRTAEYNG 302 (324)
Q Consensus 285 ------~P~l~~~~~g~~~~~~~g 302 (324)
+||+++|++|+.+.++.|
T Consensus 103 ~~~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 103 SPLSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred cCCcCCCCEEEEEECCEEEEEEec
Confidence 999999999998877776
No 84
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.67 E-value=1.2e-15 Score=113.78 Aligned_cols=101 Identities=13% Similarity=0.202 Sum_probs=86.4
Q ss_pred ChhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE-EEeC
Q psy14086 87 TEESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL-WIES 162 (324)
Q Consensus 87 ~~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~-~~~~ 162 (324)
+.++|++.+. +++++|.||++||++|+.+.|.++++++++.+ .+.|+.||+++++++++.|+|++.|+++ +|++
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~ 87 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN--FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRN 87 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCCCHHHHHHcCccCCCcEEEEEEC
Confidence 3677887773 45789999999999999999999999999987 7899999999999999999999776665 9999
Q ss_pred Ce-EeeeecC--------CCCHHHHHHHHHhhhCCC
Q psy14086 163 GK-KLDKFQG--------SRTLETLVNYVSKMKGPL 189 (324)
Q Consensus 163 g~-~~~~~~g--------~~~~~~i~~fi~~~~~~~ 189 (324)
|+ .+.+..| ..+.++|.+-++..+.+.
T Consensus 88 g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a 123 (142)
T PLN00410 88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
T ss_pred CeEEEEEecccccccccccCCHHHHHHHHHHHHHHH
Confidence 98 6777778 578888888888887654
No 85
>KOG0907|consensus
Probab=99.67 E-value=7.3e-16 Score=109.89 Aligned_cols=84 Identities=35% Similarity=0.674 Sum_probs=74.5
Q ss_pred CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCC
Q psy14086 226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRD 305 (324)
Q Consensus 226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~ 305 (324)
+.++|.||++|||+|+.+.|.+.++|.+ +. ++.|+++|+++ ..++++.++|..+||+++|++|+....+.|. +
T Consensus 22 kliVvdF~a~wCgPCk~i~P~~~~La~~-y~---~v~Flkvdvde--~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa-~ 94 (106)
T KOG0907|consen 22 KLVVVDFYATWCGPCKAIAPKFEKLAEK-YP---DVVFLKVDVDE--LEEVAKEFNVKAMPTFVFYKGGEEVDEVVGA-N 94 (106)
T ss_pred CeEEEEEECCCCcchhhhhhHHHHHHHH-CC---CCEEEEEeccc--CHhHHHhcCceEeeEEEEEECCEEEEEEecC-C
Confidence 5799999999999999999999999966 43 38999999999 8999999999999999999999998888887 5
Q ss_pred HHHHHHHHHhh
Q psy14086 306 LEELYQFILKH 316 (324)
Q Consensus 306 ~~~l~~fi~~~ 316 (324)
.+.+.+.|.++
T Consensus 95 ~~~l~~~i~~~ 105 (106)
T KOG0907|consen 95 KAELEKKIAKH 105 (106)
T ss_pred HHHHHHHHHhc
Confidence 56777777643
No 86
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.66 E-value=9e-16 Score=110.41 Aligned_cols=98 Identities=32% Similarity=0.655 Sum_probs=84.5
Q ss_pred ccccccccccC--CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEe
Q psy14086 215 TSENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK 292 (324)
Q Consensus 215 ~~~~~~~~~~~--~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~ 292 (324)
+.++|.+.+.+ ++++|.||++||++|+.+.+.+++++.+ +.. ++.|+.+|++. ++.+++.|++.++|++++|+
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~-~~~--~~~~~~vd~~~--~~~~~~~~~v~~~P~~~~~~ 76 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKE-YEG--KVKFVKLNVDE--NPDIAAKYGIRSIPTLLLFK 76 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHH-hcC--CeEEEEEECCC--CHHHHHHcCCCcCCEEEEEe
Confidence 44566666543 4899999999999999999999999955 443 69999999998 88999999999999999999
Q ss_pred cCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086 293 NGVRTAEYNGSRDLEELYQFILKHK 317 (324)
Q Consensus 293 ~g~~~~~~~g~~~~~~l~~fi~~~~ 317 (324)
+|+....+.|..+.+.+.+||.+.+
T Consensus 77 ~g~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 77 NGKEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred CCcEeeeecCCCCHHHHHHHHHhhC
Confidence 9988878889999999999998753
No 87
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.66 E-value=8e-16 Score=112.79 Aligned_cols=88 Identities=26% Similarity=0.422 Sum_probs=76.8
Q ss_pred CCeeEeccccccccccC----CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCc
Q psy14086 209 EPVVSLTSENFNDVIKS----GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG 284 (324)
Q Consensus 209 ~~v~~l~~~~~~~~~~~----~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~ 284 (324)
+.+..++.++|.+.+.+ .+++|.||++||++|+.+.|.+++++.+ +. ++.|+.+|++. + +++++++|++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~-~~---~v~f~~vd~~~--~-~l~~~~~i~~ 76 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAK-YP---ETKFVKINAEK--A-FLVNYLDIKV 76 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHH-CC---CcEEEEEEchh--h-HHHHhcCCCc
Confidence 56888999889887743 5799999999999999999999999965 43 48899999998 6 9999999999
Q ss_pred cceEEEEecCeeeeeecCC
Q psy14086 285 FPSIYVYKNGVRTAEYNGS 303 (324)
Q Consensus 285 ~P~l~~~~~g~~~~~~~g~ 303 (324)
+||+++|++|+.+..+.|.
T Consensus 77 ~Pt~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 77 LPTLLVYKNGELIDNIVGF 95 (113)
T ss_pred CCEEEEEECCEEEEEEecH
Confidence 9999999999988777763
No 88
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.65 E-value=4.3e-15 Score=113.06 Aligned_cols=99 Identities=17% Similarity=0.383 Sum_probs=84.1
Q ss_pred hhHHHHh-cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc--chhhhhhCCccccceEEEEe-CCe
Q psy14086 89 ESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ--HRSICQSFDIKSYPTLLWIE-SGK 164 (324)
Q Consensus 89 ~~f~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~--~~~~~~~~~i~~~P~~~~~~-~g~ 164 (324)
..|+..+ .+++++|.||++||++|+.+.|.+.++++.+.+ ++.|+.+|++. ...++++|+|+++|++++|+ +|+
T Consensus 11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~ 88 (142)
T cd02950 11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGN 88 (142)
T ss_pred CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCC
Confidence 3455555 345789999999999999999999999999976 57777776664 35789999999999999996 688
Q ss_pred EeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086 165 KLDKFQGSRTLETLVNYVSKMKGPL 189 (324)
Q Consensus 165 ~~~~~~g~~~~~~i~~fi~~~~~~~ 189 (324)
...++.|..+.+.|.++|.+.+.+.
T Consensus 89 ~v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 89 EEGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 8888999999999999999998865
No 89
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.65 E-value=1.7e-15 Score=110.64 Aligned_cols=99 Identities=21% Similarity=0.316 Sum_probs=82.6
Q ss_pred CCeeEecc-ccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086 209 EPVVSLTS-ENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP 286 (324)
Q Consensus 209 ~~v~~l~~-~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P 286 (324)
+.+..++. +.|.+.+.+ ++++|.||++||++|+.+.|.+++++++ +. ++.|+.+|++. ++++.++|+|.++|
T Consensus 4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~-~~---~i~f~~Vd~~~--~~~l~~~~~v~~vP 77 (113)
T cd02989 4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKK-HL---ETKFIKVNAEK--APFLVEKLNIKVLP 77 (113)
T ss_pred CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHH-cC---CCEEEEEEccc--CHHHHHHCCCccCC
Confidence 56778887 678887754 5899999999999999999999999965 43 48999999999 89999999999999
Q ss_pred eEEEEecCeeeeeecC--------CCCHHHHHHHH
Q psy14086 287 SIYVYKNGVRTAEYNG--------SRDLEELYQFI 313 (324)
Q Consensus 287 ~l~~~~~g~~~~~~~g--------~~~~~~l~~fi 313 (324)
|+++|++|+.+..+.| ..+.+++..||
T Consensus 78 t~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 78 TVILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 9999999987765543 24566777665
No 90
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.65 E-value=1e-15 Score=110.93 Aligned_cols=101 Identities=46% Similarity=0.949 Sum_probs=85.3
Q ss_pred eeEeccccccccccC--CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceE
Q psy14086 211 VVSLTSENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI 288 (324)
Q Consensus 211 v~~l~~~~~~~~~~~--~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l 288 (324)
+..+++++|++.+.+ ++++|.||++||++|+.+.|.|.+++.+ +....++.++.+|++.. ++.++++++|.++|++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~-~~~~~~~~~~~id~~~~-~~~~~~~~~i~~~P~~ 79 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAV-FANEDDVVIAKVDADEA-NKDLAKKYGVSGFPTL 79 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHH-hCCCCCEEEEEEECCCc-chhhHHhCCCCCcCEE
Confidence 567788888887753 3799999999999999999999999966 44334699999998762 4788999999999999
Q ss_pred EEEecC-eeeeeecCCCCHHHHHHHH
Q psy14086 289 YVYKNG-VRTAEYNGSRDLEELYQFI 313 (324)
Q Consensus 289 ~~~~~g-~~~~~~~g~~~~~~l~~fi 313 (324)
++|++| +....|.|.++.++|.+||
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 80 KFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEeCCCCCccccCCccCHHHHHhhC
Confidence 999876 5567899999999999985
No 91
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.64 E-value=1e-15 Score=110.76 Aligned_cols=92 Identities=22% Similarity=0.381 Sum_probs=79.5
Q ss_pred hhHHHHhc-CCCEEEEEeCCCCHhHhhHHHHH---HHHHHhcCCCCCeEEEEecccc----chhhhhhCCccccceEEEE
Q psy14086 89 ESFEKYVS-LGNHFVKFYAPWCGHCQSLAPVW---QELASHFKTEEDVSIAKIDCTQ----HRSICQSFDIKSYPTLLWI 160 (324)
Q Consensus 89 ~~f~~~~~-~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~i~~~~vd~~~----~~~~~~~~~i~~~P~~~~~ 160 (324)
+.|.+.+. +++++|+||++||++|+.+.+.+ .+++..+++ ++.++.+|++. ...++++|+|+++|++++|
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~ 79 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY 79 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 45666664 44689999999999999999988 678888876 79999999886 5789999999999999999
Q ss_pred e--CCeEeeeecCCCCHHHHHHHH
Q psy14086 161 E--SGKKLDKFQGSRTLETLVNYV 182 (324)
Q Consensus 161 ~--~g~~~~~~~g~~~~~~i~~fi 182 (324)
+ +|+...++.|..+.++|.++|
T Consensus 80 ~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 80 GPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCCCCCCcccccccCHHHHHHHh
Confidence 8 577778899999999999887
No 92
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.64 E-value=8.1e-16 Score=110.52 Aligned_cols=98 Identities=47% Similarity=1.027 Sum_probs=85.0
Q ss_pred EeccccccccccCC-cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEE
Q psy14086 213 SLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVY 291 (324)
Q Consensus 213 ~l~~~~~~~~~~~~-~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~ 291 (324)
.++.++|.+.+.++ +++|.||++||++|+.+.+.|.++++. +.....+.++.+|++. +..+++.++|+++|++++|
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKE-LKGDGKVVVAKVDCTA--NNDLCSEYGVRGYPTIKLF 78 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHH-hccCCceEEEEeeccc--hHHHHHhCCCCCCCEEEEE
Confidence 46677888888665 899999999999999999999999965 4323379999999998 8999999999999999999
Q ss_pred ecC-eeeeeecCCCCHHHHHHHH
Q psy14086 292 KNG-VRTAEYNGSRDLEELYQFI 313 (324)
Q Consensus 292 ~~g-~~~~~~~g~~~~~~l~~fi 313 (324)
++| +....|.|..+.++|.+|+
T Consensus 79 ~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 79 PNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred cCCCcccccCCCCcCHHHHHhhC
Confidence 877 6777899999999998885
No 93
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.64 E-value=1.9e-15 Score=110.66 Aligned_cols=102 Identities=33% Similarity=0.759 Sum_probs=81.3
Q ss_pred CeeEeccccccccccC--CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccce
Q psy14086 210 PVVSLTSENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287 (324)
Q Consensus 210 ~v~~l~~~~~~~~~~~--~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~ 287 (324)
.+..++.++|++.+.+ ++++|.||++||++|+.+.|.|++++.++......+.++.+|++...+.+++++++++++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 4788999999998865 37999999999999999999999999664332235899999986533678899999999999
Q ss_pred EEEEecCeee----eeecCC-CCHHHHHH
Q psy14086 288 IYVYKNGVRT----AEYNGS-RDLEELYQ 311 (324)
Q Consensus 288 l~~~~~g~~~----~~~~g~-~~~~~l~~ 311 (324)
+++|+.|... ..|+|. +..+++.+
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNELRE 110 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHHHH
Confidence 9999887642 246666 66666654
No 94
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.64 E-value=2.7e-15 Score=133.53 Aligned_cols=105 Identities=25% Similarity=0.564 Sum_probs=89.0
Q ss_pred CCCceEcChhhHHHHhc----CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch-hhh-hhCCccc
Q psy14086 80 NEGLVELTEESFEKYVS----LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR-SIC-QSFDIKS 153 (324)
Q Consensus 80 ~~~~~~l~~~~f~~~~~----~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~-~~~-~~~~i~~ 153 (324)
...+..|+.++|++.+. +++++|.||++||++|+.+.|.|+++++++++. .+.|+.+|++.+. .++ ++|+|++
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-~v~~~kVdvD~~~~~~~~~~~~I~~ 428 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS 428 (463)
T ss_pred CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CcEEEEEECCCCccHHHHHHcCCCc
Confidence 45789999999999873 447899999999999999999999999999762 3899999998653 444 7899999
Q ss_pred cceEEEEeCCe-Eeeeec-CCCCHHHHHHHHHhh
Q psy14086 154 YPTLLWIESGK-KLDKFQ-GSRTLETLVNYVSKM 185 (324)
Q Consensus 154 ~P~~~~~~~g~-~~~~~~-g~~~~~~i~~fi~~~ 185 (324)
+||+++|++|. ....|. |.++.++|..||+..
T Consensus 429 ~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 429 FPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred cceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 99999999874 445687 579999999999753
No 95
>PLN02309 5'-adenylylsulfate reductase
Probab=99.63 E-value=3.4e-15 Score=132.86 Aligned_cols=106 Identities=24% Similarity=0.575 Sum_probs=91.5
Q ss_pred CCCCceEcChhhHHHHh----cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-cchhhhh-hCCcc
Q psy14086 79 VNEGLVELTEESFEKYV----SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-QHRSICQ-SFDIK 152 (324)
Q Consensus 79 ~~~~~~~l~~~~f~~~~----~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-~~~~~~~-~~~i~ 152 (324)
....+..|+.++|++++ .++.++|.||+|||++|+.+.|.|.++++.+.+. .+.|+.+|++ .+..++. +|+|+
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~-~V~f~kVD~d~~~~~la~~~~~I~ 421 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLG 421 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CeEEEEEECCCcchHHHHhhCCCc
Confidence 34578999999999887 3457899999999999999999999999999753 5999999999 7788886 69999
Q ss_pred ccceEEEEeCCe-EeeeecC-CCCHHHHHHHHHhh
Q psy14086 153 SYPTLLWIESGK-KLDKFQG-SRTLETLVNYVSKM 185 (324)
Q Consensus 153 ~~P~~~~~~~g~-~~~~~~g-~~~~~~i~~fi~~~ 185 (324)
++||+++|++|. ....|.| .++.++|..||+..
T Consensus 422 ~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 422 SFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 999999998864 4556875 69999999999864
No 96
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.63 E-value=5.1e-15 Score=105.68 Aligned_cols=92 Identities=27% Similarity=0.547 Sum_probs=79.6
Q ss_pred hhhHHHHhc-C--CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCe
Q psy14086 88 EESFEKYVS-L--GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGK 164 (324)
Q Consensus 88 ~~~f~~~~~-~--~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~ 164 (324)
.++|++.+. . ++++|.||++||++|+.+.+.|++++..+.. .+.++.+|+++.+.++++|+++++|++++|++|+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~--~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP--SVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC--ceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 567777763 3 5679999999999999999999999999754 7999999999999999999999999999999998
Q ss_pred EeeeecCCCCHHHHHHHH
Q psy14086 165 KLDKFQGSRTLETLVNYV 182 (324)
Q Consensus 165 ~~~~~~g~~~~~~i~~fi 182 (324)
...++.|. +.+.|.+.|
T Consensus 80 ~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 80 IVDRVSGA-DPKELAKKV 96 (97)
T ss_pred EEEEEeCC-CHHHHHHhh
Confidence 88777775 667777665
No 97
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.63 E-value=3.9e-15 Score=106.10 Aligned_cols=85 Identities=19% Similarity=0.440 Sum_probs=79.1
Q ss_pred CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHH
Q psy14086 97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLE 176 (324)
Q Consensus 97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~ 176 (324)
.++++++||++||+.|+.+.+.++++++.+.+ ++.++.+|+++.+.++++++|.++|+++++++|+...++.|..+.+
T Consensus 13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~ 90 (97)
T cd02949 13 DRLILVLYTSPTCGPCRTLKPILNKVIDEFDG--AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMKS 90 (97)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccHH
Confidence 44679999999999999999999999999976 7999999999999999999999999999999999888999999999
Q ss_pred HHHHHHH
Q psy14086 177 TLVNYVS 183 (324)
Q Consensus 177 ~i~~fi~ 183 (324)
+|.+|++
T Consensus 91 ~~~~~l~ 97 (97)
T cd02949 91 EYREFIE 97 (97)
T ss_pred HHHHhhC
Confidence 9999873
No 98
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.63 E-value=3e-15 Score=111.68 Aligned_cols=98 Identities=17% Similarity=0.200 Sum_probs=81.0
Q ss_pred ccccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEE-EE
Q psy14086 216 SENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIY-VY 291 (324)
Q Consensus 216 ~~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~-~~ 291 (324)
...|++.+. +++++|.||++||++|+.+.|.++++|.+ +.. .+.|+.+|+++ +++++..|+|++.|+++ +|
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~-~~~--~~~~~kVDVDe--~~dla~~y~I~~~~t~~~ff 85 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAET-IKN--FAVIYLVDITE--VPDFNTMYELYDPCTVMFFF 85 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHH-cCC--ceEEEEEECCC--CHHHHHHcCccCCCcEEEEE
Confidence 455777663 45899999999999999999999999966 443 48889999999 99999999999777666 88
Q ss_pred ecCe-eeeeecC--------CCCHHHHHHHHHhhcc
Q psy14086 292 KNGV-RTAEYNG--------SRDLEELYQFILKHKV 318 (324)
Q Consensus 292 ~~g~-~~~~~~g--------~~~~~~l~~fi~~~~~ 318 (324)
++|+ .+....| ..+.++|.+-++..+.
T Consensus 86 k~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 86 RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred ECCeEEEEEecccccccccccCCHHHHHHHHHHHHH
Confidence 9998 6777788 5678888888877644
No 99
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.62 E-value=2.7e-15 Score=133.55 Aligned_cols=105 Identities=25% Similarity=0.584 Sum_probs=87.0
Q ss_pred CCCCeeEecccccccccc----CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccch-hhh-hhc
Q psy14086 207 KPEPVVSLTSENFNDVIK----SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK-DLC-NQE 280 (324)
Q Consensus 207 ~~~~v~~l~~~~~~~~~~----~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~-~~~-~~~ 280 (324)
....|..|+.++|++.+. +++++|.||+|||++|+.+.|.|+++|.+ +.. ..+.|+.+|++. +. .++ ..|
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~-~~~-~~v~~~kVdvD~--~~~~~~~~~~ 424 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEK-LAG-SGVKVAKFRADG--DQKEFAKQEL 424 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHH-hcc-CCcEEEEEECCC--CccHHHHHHc
Confidence 456799999999999874 35799999999999999999999999966 433 248899999987 32 344 689
Q ss_pred CCCccceEEEEecCe-eeeeec-CCCCHHHHHHHHHh
Q psy14086 281 GVDGFPSIYVYKNGV-RTAEYN-GSRDLEELYQFILK 315 (324)
Q Consensus 281 ~i~~~P~l~~~~~g~-~~~~~~-g~~~~~~l~~fi~~ 315 (324)
+|+++||+++|++|. ....|. |.++.+.|..||+.
T Consensus 425 ~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 425 QLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred CCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 999999999999885 345687 57999999999975
No 100
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.62 E-value=1.1e-13 Score=111.02 Aligned_cols=170 Identities=22% Similarity=0.300 Sum_probs=139.3
Q ss_pred hHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCC-eEeeeecCC-CCHHHHHHHHHhhhCCCCC
Q psy14086 114 SLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG-KKLDKFQGS-RTLETLVNYVSKMKGPLNK 191 (324)
Q Consensus 114 ~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g-~~~~~~~g~-~~~~~i~~fi~~~~~~~~~ 191 (324)
.....|.++|+.+++ .+.|+.+. +..+++.+++.. |++++++++ +....|.|. .+.++|.+||....-
T Consensus 7 ~~~~~f~~~A~~~~~--~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~---- 76 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKG--DYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF---- 76 (184)
T ss_dssp HHHHHHHHHHHHHTT--TSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS----
T ss_pred HHHHHHHHHHHhCcC--CcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc----
Confidence 356789999999998 69999765 567999999998 999999983 455679998 899999999999877
Q ss_pred CCCCCccccCCCCCCCCCCeeEeccccccccccCC-c-EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC
Q psy14086 192 KADSPDAENASEVPVKPEPVVSLTSENFNDVIKSG-T-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269 (324)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~-~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~ 269 (324)
+.|..++..++..+...+ + +++.|..........+...++.+|.+ +++ ++.|+++|++
T Consensus 77 -----------------P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~-~~~--~~~f~~~d~~ 136 (184)
T PF13848_consen 77 -----------------PLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKK-FKG--KINFVYVDAD 136 (184)
T ss_dssp -----------------TSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHC-TTT--TSEEEEEETT
T ss_pred -----------------ccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHh-cCC--eEEEEEeehH
Confidence 569999999999998775 4 77777766666777888889999965 444 6999999999
Q ss_pred CccchhhhhhcCCC--ccceEEEEe--cCeeeeeecCCCCHHHHHHHHHh
Q psy14086 270 QELSKDLCNQEGVD--GFPSIYVYK--NGVRTAEYNGSRDLEELYQFILK 315 (324)
Q Consensus 270 ~~~~~~~~~~~~i~--~~P~l~~~~--~g~~~~~~~g~~~~~~l~~fi~~ 315 (324)
. .+.+.+.++++ .+|+++++. .++....+.|..+.+.|.+||++
T Consensus 137 ~--~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 137 D--FPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp T--THHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred H--hHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 7 78899999998 899999997 34433345888999999999974
No 101
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.61 E-value=6.3e-15 Score=112.14 Aligned_cols=98 Identities=17% Similarity=0.306 Sum_probs=80.6
Q ss_pred cccccc-CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEe-cCee
Q psy14086 219 FNDVIK-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK-NGVR 296 (324)
Q Consensus 219 ~~~~~~-~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~-~g~~ 296 (324)
+++.+. +++++|.||++||++|+.+.|.+.+++.+ +.. .+.|+.+|++......++..|+|.++|++++|. +|+.
T Consensus 13 ~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~-~~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 13 PEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQK-YGD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred HHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHH-hcc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 555443 45899999999999999999999999965 444 477787777763245788999999999999994 7888
Q ss_pred eeeecCCCCHHHHHHHHHhhccc
Q psy14086 297 TAEYNGSRDLEELYQFILKHKVE 319 (324)
Q Consensus 297 ~~~~~g~~~~~~l~~fi~~~~~~ 319 (324)
+..+.|..+.+.|.++|.+.+..
T Consensus 90 v~~~~G~~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLDALVAG 112 (142)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcC
Confidence 88899999999999999987753
No 102
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.61 E-value=1.1e-14 Score=114.51 Aligned_cols=101 Identities=23% Similarity=0.360 Sum_probs=86.9
Q ss_pred CCCceEcCh-hhHHHHhcCC----CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCcccc
Q psy14086 80 NEGLVELTE-ESFEKYVSLG----NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSY 154 (324)
Q Consensus 80 ~~~~~~l~~-~~f~~~~~~~----~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~ 154 (324)
...+.+++. ++|.+.+.+. +++|.||++||++|+.+.|.|..++.++. .+.|++||++.. .++.+|+|..+
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~---~vkF~kVd~d~~-~l~~~f~v~~v 136 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP---AVKFCKIRASAT-GASDEFDTDAL 136 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC---CeEEEEEeccch-hhHHhCCCCCC
Confidence 456888988 9999888432 68999999999999999999999999986 499999999987 89999999999
Q ss_pred ceEEEEeCCeEeeeecC-------CCCHHHHHHHHHh
Q psy14086 155 PTLLWIESGKKLDKFQG-------SRTLETLVNYVSK 184 (324)
Q Consensus 155 P~~~~~~~g~~~~~~~g-------~~~~~~i~~fi~~ 184 (324)
||+++|++|+.+.++.| .++.+.|..|+.+
T Consensus 137 PTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 137 PALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred CEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 99999999988766653 3678888887765
No 103
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.61 E-value=8e-15 Score=104.46 Aligned_cols=85 Identities=20% Similarity=0.501 Sum_probs=76.7
Q ss_pred CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCC
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR 304 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~ 304 (324)
++++++.||++||+.|+.+.|.+++++++ +.. ++.++.+|++. .+++..++++.++|++++|++|+.+..+.|..
T Consensus 13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~~-~~~--~v~~~~id~d~--~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~ 87 (97)
T cd02949 13 DRLILVLYTSPTCGPCRTLKPILNKVIDE-FDG--AVHFVEIDIDE--DQEIAEAAGIMGTPTVQFFKDKELVKEISGVK 87 (97)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHH-hCC--ceEEEEEECCC--CHHHHHHCCCeeccEEEEEECCeEEEEEeCCc
Confidence 45799999999999999999999999955 444 69999999998 88999999999999999999999888899999
Q ss_pred CHHHHHHHHH
Q psy14086 305 DLEELYQFIL 314 (324)
Q Consensus 305 ~~~~l~~fi~ 314 (324)
+.+.+.+||+
T Consensus 88 ~~~~~~~~l~ 97 (97)
T cd02949 88 MKSEYREFIE 97 (97)
T ss_pred cHHHHHHhhC
Confidence 9999998873
No 104
>PLN02309 5'-adenylylsulfate reductase
Probab=99.61 E-value=4.5e-15 Score=132.08 Aligned_cols=106 Identities=25% Similarity=0.626 Sum_probs=88.8
Q ss_pred CCCCeeEecccccccccc----CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC-Cccchhhhh-hc
Q psy14086 207 KPEPVVSLTSENFNDVIK----SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT-QELSKDLCN-QE 280 (324)
Q Consensus 207 ~~~~v~~l~~~~~~~~~~----~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~-~~~~~~~~~-~~ 280 (324)
....|..++.++|++.+. +++++|.||+|||++|+.+.|.|++++.+ +.. .++.|+.+|++ . +.+++. .|
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~-~~~-~~V~f~kVD~d~~--~~~la~~~~ 418 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEK-LAG-SGVKVAKFRADGD--QKEFAKQEL 418 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHH-hcc-CCeEEEEEECCCc--chHHHHhhC
Confidence 446789999999998873 45799999999999999999999999966 432 26999999999 5 677775 69
Q ss_pred CCCccceEEEEecCe-eeeeecC-CCCHHHHHHHHHhh
Q psy14086 281 GVDGFPSIYVYKNGV-RTAEYNG-SRDLEELYQFILKH 316 (324)
Q Consensus 281 ~i~~~P~l~~~~~g~-~~~~~~g-~~~~~~l~~fi~~~ 316 (324)
+|+++||+++|++|. ....|.| .++.+.|.+||+..
T Consensus 419 ~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 419 QLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred CCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 999999999998775 4557875 69999999999864
No 105
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.61 E-value=1e-14 Score=106.75 Aligned_cols=97 Identities=33% Similarity=0.725 Sum_probs=78.6
Q ss_pred CceEcChhhHHHHhcCC--CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC-CCeEEEEeccc--cchhhhhhCCccccce
Q psy14086 82 GLVELTEESFEKYVSLG--NHFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCT--QHRSICQSFDIKSYPT 156 (324)
Q Consensus 82 ~~~~l~~~~f~~~~~~~--~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~--~~~~~~~~~~i~~~P~ 156 (324)
.+.+++.++|++.+.+. +++|.||++||++|+.+.|.|++++..+++. ..+.|+.+||+ .+..++++|+|+++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 57889999999998544 6899999999999999999999999988643 25899999986 4678999999999999
Q ss_pred EEEEeCCeEe----eeecCC-CCHHHH
Q psy14086 157 LLWIESGKKL----DKFQGS-RTLETL 178 (324)
Q Consensus 157 ~~~~~~g~~~----~~~~g~-~~~~~i 178 (324)
+++|++|... ..|.|. +..+.+
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNEL 108 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHH
Confidence 9999887532 234454 444444
No 106
>PTZ00051 thioredoxin; Provisional
Probab=99.60 E-value=1.4e-14 Score=103.57 Aligned_cols=89 Identities=28% Similarity=0.591 Sum_probs=77.3
Q ss_pred ChhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeE
Q psy14086 87 TEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKK 165 (324)
Q Consensus 87 ~~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~ 165 (324)
+.++|.+.++. +++++.||++||++|+.+.+.|+++++.+.+ +.|+.+|++++..++++|+|.++|+++++++|+.
T Consensus 7 ~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 7 SQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK---MVFVKVDVDELSEVAEKENITSMPTFKVFKNGSV 83 (98)
T ss_pred CHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC---cEEEEEECcchHHHHHHCCCceeeEEEEEeCCeE
Confidence 35677777754 4679999999999999999999999998764 9999999999999999999999999999999999
Q ss_pred eeeecCCCCHHHHH
Q psy14086 166 LDKFQGSRTLETLV 179 (324)
Q Consensus 166 ~~~~~g~~~~~~i~ 179 (324)
..++.|. ..++|.
T Consensus 84 ~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 84 VDTLLGA-NDEALK 96 (98)
T ss_pred EEEEeCC-CHHHhh
Confidence 8888886 555554
No 107
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.59 E-value=1.1e-14 Score=106.47 Aligned_cols=94 Identities=14% Similarity=0.241 Sum_probs=79.4
Q ss_pred HHHHh-cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEe--e
Q psy14086 91 FEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKL--D 167 (324)
Q Consensus 91 f~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~--~ 167 (324)
|.+.+ ....++|.||++||++|+.+.|.+++++..+ + .+.|..+|.++++.++++|+|.++|+++++++|+.. .
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~--~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~ 91 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D--KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGI 91 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C--ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceE
Confidence 43333 3335678889999999999999999999887 4 699999999999999999999999999999886433 2
Q ss_pred eecCCCCHHHHHHHHHhhhC
Q psy14086 168 KFQGSRTLETLVNYVSKMKG 187 (324)
Q Consensus 168 ~~~g~~~~~~i~~fi~~~~~ 187 (324)
++.|..+.+++.+||...+.
T Consensus 92 ~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 92 RYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred EEEecCchHHHHHHHHHHHh
Confidence 68899999999999998764
No 108
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.59 E-value=1e-14 Score=103.77 Aligned_cols=96 Identities=18% Similarity=0.311 Sum_probs=76.8
Q ss_pred hhHHHHh---cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeE
Q psy14086 89 ESFEKYV---SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKK 165 (324)
Q Consensus 89 ~~f~~~~---~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~ 165 (324)
+.|++.+ ..++++|.|+++||++|+.+.|.+.+++.++++ .+.|+.||+++.+++++.|+|+..|++++|.+|+.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~--~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK--MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC--ceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 4555555 356789999999999999999999999999975 59999999999999999999999999999999875
Q ss_pred ee---------eecCC-CCHHHHHHHHHhhh
Q psy14086 166 LD---------KFQGS-RTLETLVNYVSKMK 186 (324)
Q Consensus 166 ~~---------~~~g~-~~~~~i~~fi~~~~ 186 (324)
.. +..+. .+.+++.+-++...
T Consensus 81 ~~~d~gt~~~~k~~~~~~~k~~~idi~e~~y 111 (114)
T cd02986 81 MKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY 111 (114)
T ss_pred EEEecCCCCCcEEEEEcCchhHHHHHHHHHH
Confidence 43 12222 24566666665543
No 109
>KOG0908|consensus
Probab=99.59 E-value=7.3e-15 Score=116.23 Aligned_cols=103 Identities=25% Similarity=0.569 Sum_probs=89.7
Q ss_pred ceEcC-hhhHHHHhcC---CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086 83 LVELT-EESFEKYVSL---GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL 158 (324)
Q Consensus 83 ~~~l~-~~~f~~~~~~---~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~ 158 (324)
|..++ +.+|+..+.. +.++|.|++.||+||+++.|.|..++.+|.+ ..|.+||+++....+..+||.++||++
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~---aVFlkVdVd~c~~taa~~gV~amPTFi 79 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG---AVFLKVDVDECRGTAATNGVNAMPTFI 79 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc---cEEEEEeHHHhhchhhhcCcccCceEE
Confidence 34443 4577777632 2578999999999999999999999999975 999999999999999999999999999
Q ss_pred EEeCCeEeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086 159 WIESGKKLDKFQGSRTLETLVNYVSKMKGPL 189 (324)
Q Consensus 159 ~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~~ 189 (324)
+|++|..+.+++|. ++..|++-+..++...
T Consensus 80 ff~ng~kid~~qGA-d~~gLe~kv~~~~sts 109 (288)
T KOG0908|consen 80 FFRNGVKIDQIQGA-DASGLEEKVAKYASTS 109 (288)
T ss_pred EEecCeEeeeecCC-CHHHHHHHHHHHhccC
Confidence 99999999999988 7888999999887744
No 110
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.59 E-value=1.1e-14 Score=114.51 Aligned_cols=102 Identities=24% Similarity=0.394 Sum_probs=85.4
Q ss_pred CCCeeEecc-ccccccccC----CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCC
Q psy14086 208 PEPVVSLTS-ENFNDVIKS----GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGV 282 (324)
Q Consensus 208 ~~~v~~l~~-~~~~~~~~~----~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i 282 (324)
.+.+..++. ++|.+.+.. .+++|.||++||++|+.+.|.|.++|.+ +. .+.|++||++. . +++..|+|
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~-~~---~vkF~kVd~d~--~-~l~~~f~v 133 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAE-YP---AVKFCKIRASA--T-GASDEFDT 133 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHH-CC---CeEEEEEeccc--h-hhHHhCCC
Confidence 377899998 888888743 2799999999999999999999999966 33 59999999998 5 88999999
Q ss_pred CccceEEEEecCeeeeeecC-------CCCHHHHHHHHHhh
Q psy14086 283 DGFPSIYVYKNGVRTAEYNG-------SRDLEELYQFILKH 316 (324)
Q Consensus 283 ~~~P~l~~~~~g~~~~~~~g-------~~~~~~l~~fi~~~ 316 (324)
.++||+++|++|+.+..+.| ..+.+.|..||.++
T Consensus 134 ~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 134 DALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred CCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 99999999999987755543 36678888887653
No 111
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.58 E-value=1.3e-14 Score=103.55 Aligned_cols=91 Identities=22% Similarity=0.550 Sum_probs=76.1
Q ss_pred cccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEec
Q psy14086 217 ENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKN 293 (324)
Q Consensus 217 ~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~ 293 (324)
++|++.+. +++++|.||++||++|+.+.|.+++++.++ . ..+.++.+|++. .+++++.|+++++||+++|++
T Consensus 3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-~--~~i~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~~ 77 (97)
T cd02984 3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEA-F--PSVLFLSIEAEE--LPEISEKFEITAVPTFVFFRN 77 (97)
T ss_pred HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHh-C--CceEEEEEcccc--CHHHHHhcCCccccEEEEEEC
Confidence 34555553 257999999999999999999999999664 3 379999999998 899999999999999999999
Q ss_pred CeeeeeecCCCCHHHHHHHH
Q psy14086 294 GVRTAEYNGSRDLEELYQFI 313 (324)
Q Consensus 294 g~~~~~~~g~~~~~~l~~fi 313 (324)
|+.+..+.|. +.+.|.+.|
T Consensus 78 g~~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 78 GTIVDRVSGA-DPKELAKKV 96 (97)
T ss_pred CEEEEEEeCC-CHHHHHHhh
Confidence 9888777885 667777665
No 112
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.58 E-value=1.4e-14 Score=105.81 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=75.6
Q ss_pred CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeee--eecC
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA--EYNG 302 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~--~~~g 302 (324)
...++|.||++||++|+.+.|.+++++.. + . .+.|..+|.+. ++++.++|+|.++|++++|++|+... .+.|
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~-~-~--~i~~~~vd~d~--~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G 95 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSEL-S-D--KLKLEIYDFDE--DKEKAEKYGVERVPTTIFLQDGGKDGGIRYYG 95 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHh-c-C--ceEEEEEeCCc--CHHHHHHcCCCcCCEEEEEeCCeecceEEEEe
Confidence 34688899999999999999999999955 3 3 58999999998 89999999999999999999865432 6889
Q ss_pred CCCHHHHHHHHHhhcc
Q psy14086 303 SRDLEELYQFILKHKV 318 (324)
Q Consensus 303 ~~~~~~l~~fi~~~~~ 318 (324)
.....++.+||...+.
T Consensus 96 ~~~~~el~~~i~~i~~ 111 (113)
T cd02975 96 LPAGYEFASLIEDIVR 111 (113)
T ss_pred cCchHHHHHHHHHHHh
Confidence 8888999999988765
No 113
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.58 E-value=3.9e-14 Score=104.61 Aligned_cols=99 Identities=19% Similarity=0.229 Sum_probs=80.3
Q ss_pred CCceEcChhhHHHHhcCC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc-----------hhhhhh
Q psy14086 81 EGLVELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH-----------RSICQS 148 (324)
Q Consensus 81 ~~~~~l~~~~f~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~-----------~~~~~~ 148 (324)
.++..++.+.|.+.+.++ ..+|+|+++||++|+.+.|.|.+++++. ++.|..+|.+.+ ..+.++
T Consensus 6 ~~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~ 81 (122)
T TIGR01295 6 KGLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGSFEMSSLNDLTAFRSR 81 (122)
T ss_pred ccceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccCcCcccHHHHHHHHHH
Confidence 367789999999988665 5699999999999999999999999983 356666776643 245566
Q ss_pred CCc----cccceEEEEeCCeEeeeecC-CCCHHHHHHHHH
Q psy14086 149 FDI----KSYPTLLWIESGKKLDKFQG-SRTLETLVNYVS 183 (324)
Q Consensus 149 ~~i----~~~P~~~~~~~g~~~~~~~g-~~~~~~i~~fi~ 183 (324)
|++ .++|++++|++|+.+.+..| ..+.++|.+|+.
T Consensus 82 ~~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 82 FGIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cCCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 654 45999999999999998988 467999999874
No 114
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.57 E-value=2.5e-14 Score=103.31 Aligned_cols=87 Identities=23% Similarity=0.297 Sum_probs=77.5
Q ss_pred CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCcc--ccceEEEEeC--CeEeeeecCC
Q psy14086 97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIK--SYPTLLWIES--GKKLDKFQGS 172 (324)
Q Consensus 97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~--~~P~~~~~~~--g~~~~~~~g~ 172 (324)
+.++++.|+++||++|+.+.+.++++|+++++ ++.|+.+|++++..+++.|||. ++|++++++. |+.+....|.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~--~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~ 89 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG--KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEE 89 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC--eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccc
Confidence 56889999999999999999999999999998 8999999999999999999999 9999999998 5554433345
Q ss_pred CCHHHHHHHHHhh
Q psy14086 173 RTLETLVNYVSKM 185 (324)
Q Consensus 173 ~~~~~i~~fi~~~ 185 (324)
.+.++|.+||.++
T Consensus 90 ~~~~~l~~fi~~~ 102 (103)
T cd02982 90 LTAESLEEFVEDF 102 (103)
T ss_pred cCHHHHHHHHHhh
Confidence 6999999999875
No 115
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.57 E-value=9.4e-15 Score=105.63 Aligned_cols=93 Identities=23% Similarity=0.380 Sum_probs=75.2
Q ss_pred cccccc-CCcEEEEEeCCCChhhhhhhHhH---HHHHHHhhcCCCCeEEEEEecCCcc--chhhhhhcCCCccceEEEEe
Q psy14086 219 FNDVIK-SGTVFIKFFAPWCGHCKRLAPTW---EELGTKLLDNKHGIVIAKVDCTQEL--SKDLCNQEGVDGFPSIYVYK 292 (324)
Q Consensus 219 ~~~~~~-~~~~~v~f~~~~c~~C~~~~~~~---~~~a~~~~~~~~~~~~~~id~~~~~--~~~~~~~~~i~~~P~l~~~~ 292 (324)
|.+.+. +++++|.||++||++|+.+.+.+ .+++.. +.. ++.++.+|++... ..+++++++++++|++++|+
T Consensus 4 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~--~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~ 80 (104)
T cd02953 4 LAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAA-LKK--DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG 80 (104)
T ss_pred HHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHH-HhC--CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 444443 45899999999999999999888 567744 554 6999999987521 35788999999999999997
Q ss_pred --cCeeeeeecCCCCHHHHHHHHH
Q psy14086 293 --NGVRTAEYNGSRDLEELYQFIL 314 (324)
Q Consensus 293 --~g~~~~~~~g~~~~~~l~~fi~ 314 (324)
+|+.+..+.|..+.+.|.++|+
T Consensus 81 ~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 81 PGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCCcccccccCHHHHHHHhC
Confidence 6787888999999999998873
No 116
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.55 E-value=6.9e-14 Score=98.61 Aligned_cols=90 Identities=32% Similarity=0.747 Sum_probs=80.3
Q ss_pred hHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeee
Q psy14086 90 SFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDK 168 (324)
Q Consensus 90 ~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~ 168 (324)
+|.+.+.. ++++++||++||++|..+.+.+++++.. .+ ++.|+.+|++....+++.|++.++|+++++++|+....
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~--~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~ 78 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YP--KVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDR 78 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CC--CceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEE
Confidence 45555533 6789999999999999999999999998 33 79999999999999999999999999999999998888
Q ss_pred ecCCCCHHHHHHHH
Q psy14086 169 FQGSRTLETLVNYV 182 (324)
Q Consensus 169 ~~g~~~~~~i~~fi 182 (324)
+.|..+.+.|.+||
T Consensus 79 ~~g~~~~~~l~~~i 92 (93)
T cd02947 79 VVGADPKEELEEFL 92 (93)
T ss_pred EecCCCHHHHHHHh
Confidence 99999989999887
No 117
>PTZ00051 thioredoxin; Provisional
Probab=99.55 E-value=4.6e-14 Score=100.86 Aligned_cols=93 Identities=32% Similarity=0.644 Sum_probs=76.7
Q ss_pred eeEecc-ccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceE
Q psy14086 211 VVSLTS-ENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI 288 (324)
Q Consensus 211 v~~l~~-~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l 288 (324)
|..++. +.+.+.++. ++++|.||++||++|+.+.|.+++++.+ +. ++.|+.+|++. +..++++|++.++|++
T Consensus 2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~-~~---~~~~~~vd~~~--~~~~~~~~~v~~~Pt~ 75 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKE-YT---KMVFVKVDVDE--LSEVAEKENITSMPTF 75 (98)
T ss_pred eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHH-cC---CcEEEEEECcc--hHHHHHHCCCceeeEE
Confidence 344444 446676654 5799999999999999999999999964 32 48999999998 8899999999999999
Q ss_pred EEEecCeeeeeecCCCCHHHHH
Q psy14086 289 YVYKNGVRTAEYNGSRDLEELY 310 (324)
Q Consensus 289 ~~~~~g~~~~~~~g~~~~~~l~ 310 (324)
++|++|+.+..+.|. ..++|.
T Consensus 76 ~~~~~g~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 76 KVFKNGSVVDTLLGA-NDEALK 96 (98)
T ss_pred EEEeCCeEEEEEeCC-CHHHhh
Confidence 999999998888886 556654
No 118
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.55 E-value=4.5e-14 Score=104.29 Aligned_cols=100 Identities=15% Similarity=0.148 Sum_probs=77.7
Q ss_pred CeeEeccccccccccCC-cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc---------chhhhhh
Q psy14086 210 PVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL---------SKDLCNQ 279 (324)
Q Consensus 210 ~v~~l~~~~~~~~~~~~-~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~---------~~~~~~~ 279 (324)
.+..++.+.+.+.+.++ .++|+|+++||++|+.+.|.+.+++.+ . ++.+..+|++... ..++.+.
T Consensus 7 ~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~---~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~ 81 (122)
T TIGR01295 7 GLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ---T--KAPIYYIDSENNGSFEMSSLNDLTAFRSR 81 (122)
T ss_pred cceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh---c--CCcEEEEECCCccCcCcccHHHHHHHHHH
Confidence 46667778888888765 689999999999999999999999954 2 4567777776410 1244566
Q ss_pred cC----CCccceEEEEecCeeeeeecCC-CCHHHHHHHHH
Q psy14086 280 EG----VDGFPSIYVYKNGVRTAEYNGS-RDLEELYQFIL 314 (324)
Q Consensus 280 ~~----i~~~P~l~~~~~g~~~~~~~g~-~~~~~l~~fi~ 314 (324)
++ +.++||+++|++|+.+....|. .+.++|.+|+.
T Consensus 82 ~~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 82 FGIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cCCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 55 4569999999999998888884 57999999874
No 119
>KOG0908|consensus
Probab=99.54 E-value=3e-14 Score=112.83 Aligned_cols=102 Identities=30% Similarity=0.642 Sum_probs=86.5
Q ss_pred eeEecc-ccccccccC---CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086 211 VVSLTS-ENFNDVIKS---GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP 286 (324)
Q Consensus 211 v~~l~~-~~~~~~~~~---~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P 286 (324)
|..+.+ +.|+..+.. +.++|.|++.||++|+...|+|+.++++| . +..|.++|++. ....+..+||...|
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankY-p---~aVFlkVdVd~--c~~taa~~gV~amP 76 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKY-P---GAVFLKVDVDE--CRGTAATNGVNAMP 76 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhC-c---ccEEEEEeHHH--hhchhhhcCcccCc
Confidence 444544 447766642 47999999999999999999999999885 3 58999999999 88889999999999
Q ss_pred eEEEEecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086 287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHKVE 319 (324)
Q Consensus 287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~ 319 (324)
|+++|++|.++..+.|. +...|++-|.++...
T Consensus 77 TFiff~ng~kid~~qGA-d~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 77 TFIFFRNGVKIDQIQGA-DASGLEEKVAKYAST 108 (288)
T ss_pred eEEEEecCeEeeeecCC-CHHHHHHHHHHHhcc
Confidence 99999999999999987 788898888887654
No 120
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.52 E-value=5.1e-12 Score=105.22 Aligned_cols=206 Identities=17% Similarity=0.302 Sum_probs=135.3
Q ss_pred CCCCCceEcChhhHHHHhcCCCE-EEEEeCCCCHhHhh-----HHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCc
Q psy14086 78 IVNEGLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQS-----LAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDI 151 (324)
Q Consensus 78 ~~~~~~~~l~~~~f~~~~~~~~~-~v~f~~~~c~~c~~-----~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i 151 (324)
.....+..||..||.+.+++..+ .|+|+.|--..-.. +...+-+|+.+.-....+.|+.||..++..+++++|+
T Consensus 31 DGkDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv 110 (383)
T PF01216_consen 31 DGKDRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGV 110 (383)
T ss_dssp SSS--CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT-
T ss_pred CCccceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCc
Confidence 34567999999999999876655 57777766432211 2233556666665555799999999999999999999
Q ss_pred cccceEEEEeCCeEeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecccc-c--cccccCCcE
Q psy14086 152 KSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSEN-F--NDVIKSGTV 228 (324)
Q Consensus 152 ~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~--~~~~~~~~~ 228 (324)
...+++++|+.|..+. |.|.++++.+++||.+.+. .+|..|+.+. + .+-+++.+.
T Consensus 111 ~E~~SiyVfkd~~~IE-ydG~~saDtLVeFl~dl~e---------------------dPVeiIn~~~e~~~Fe~ied~~k 168 (383)
T PF01216_consen 111 EEEGSIYVFKDGEVIE-YDGERSADTLVEFLLDLLE---------------------DPVEIINNKHELKAFERIEDDIK 168 (383)
T ss_dssp -STTEEEEEETTEEEE-E-S--SHHHHHHHHHHHHS---------------------SSEEEE-SHHHHHHHHH--SS-E
T ss_pred cccCcEEEEECCcEEE-ecCccCHHHHHHHHHHhcc---------------------cchhhhcChhhhhhhhhccccee
Confidence 9999999999997765 9999999999999999998 5688888766 2 233345677
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecC-eeeeeecC-CCCH
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNG-VRTAEYNG-SRDL 306 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g-~~~~~~~g-~~~~ 306 (324)
+|-|+.+.-+ .....++++|.. |.. .+.|..+- ++.++++++++ +-.+-+|..= .......| +.+.
T Consensus 169 lIGyFk~~~s---~~yk~FeeAAe~-F~p--~IkFfAtf-----d~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~e 236 (383)
T PF01216_consen 169 LIGYFKSEDS---EHYKEFEEAAEH-FQP--YIKFFATF-----DKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYTE 236 (383)
T ss_dssp EEEE-SSTTS---HHHHHHHHHHHH-CTT--TSEEEEE------SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--H
T ss_pred EEEEeCCCCc---HHHHHHHHHHHh-hcC--ceeEEEEe-----cchhhhhcCcc-ccceeeeccccCCCccCCCCCCCH
Confidence 7777665322 144567888844 655 57777654 68899999996 7788888642 33334444 4789
Q ss_pred HHHHHHHHhhc
Q psy14086 307 EELYQFILKHK 317 (324)
Q Consensus 307 ~~l~~fi~~~~ 317 (324)
+++.+||.++-
T Consensus 237 ~e~~~fi~~h~ 247 (383)
T PF01216_consen 237 EELVEFIEEHK 247 (383)
T ss_dssp HHHHHHHHHT-
T ss_pred HHHHHHHHHhc
Confidence 99999999874
No 121
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.52 E-value=1.3e-13 Score=97.17 Aligned_cols=89 Identities=37% Similarity=0.739 Sum_probs=77.7
Q ss_pred ccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeee
Q psy14086 219 FNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRT 297 (324)
Q Consensus 219 ~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~ 297 (324)
|.+.+.. ++++|.||++||+.|..+.+.+++++.. ..++.++.+|++. +.++++.+++.++|++++|++|+..
T Consensus 3 ~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~----~~~~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~~~g~~~ 76 (93)
T cd02947 3 FEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE----YPKVKFVKVDVDE--NPELAEEYGVRSIPTFLFFKNGKEV 76 (93)
T ss_pred hHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH----CCCceEEEEECCC--ChhHHHhcCcccccEEEEEECCEEE
Confidence 4444444 6899999999999999999999999854 2369999999998 8999999999999999999999888
Q ss_pred eeecCCCCHHHHHHHH
Q psy14086 298 AEYNGSRDLEELYQFI 313 (324)
Q Consensus 298 ~~~~g~~~~~~l~~fi 313 (324)
..+.|..+.+.|.+||
T Consensus 77 ~~~~g~~~~~~l~~~i 92 (93)
T cd02947 77 DRVVGADPKEELEEFL 92 (93)
T ss_pred EEEecCCCHHHHHHHh
Confidence 8889988889999887
No 122
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.52 E-value=6.7e-14 Score=99.56 Aligned_cols=86 Identities=16% Similarity=0.191 Sum_probs=69.8
Q ss_pred CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeee-----
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAE----- 299 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~----- 299 (324)
+++++|.|+++||++|+.+.|.+.++|.++ .. .+.|+.+|+++ .+++.+.|+|...||+++|++|+....
T Consensus 14 ~klVVVdF~a~WC~pCk~mdp~l~ela~~~-~~--~~~f~kVDVDe--v~dva~~y~I~amPtfvffkngkh~~~d~gt~ 88 (114)
T cd02986 14 EKVLVLRFGRDEDAVCLQLDDILSKTSHDL-SK--MASIYLVDVDK--VPVYTQYFDISYIPSTIFFFNGQHMKVDYGSP 88 (114)
T ss_pred CCEEEEEEeCCCChhHHHHHHHHHHHHHHc-cC--ceEEEEEeccc--cHHHHHhcCceeCcEEEEEECCcEEEEecCCC
Confidence 568999999999999999999999999764 32 38999999999 999999999999999999999875422
Q ss_pred ----ecCC-CCHHHHHHHHHh
Q psy14086 300 ----YNGS-RDLEELYQFILK 315 (324)
Q Consensus 300 ----~~g~-~~~~~l~~fi~~ 315 (324)
..+. .+.+++.+.++-
T Consensus 89 ~~~k~~~~~~~k~~~idi~e~ 109 (114)
T cd02986 89 DHTKFVGSFKTKQDFIDLIEV 109 (114)
T ss_pred CCcEEEEEcCchhHHHHHHHH
Confidence 2222 245777776653
No 123
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.51 E-value=2.3e-13 Score=108.33 Aligned_cols=99 Identities=24% Similarity=0.322 Sum_probs=83.8
Q ss_pred CCCceEcChhhHHHHhcC----CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccc
Q psy14086 80 NEGLVELTEESFEKYVSL----GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYP 155 (324)
Q Consensus 80 ~~~~~~l~~~~f~~~~~~----~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P 155 (324)
...+..++.++|...+.. .+++|.||++||++|+.+.+.|+++|.+|.. +.|+++|++.. ...|+++.+|
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~---vkFvkI~ad~~---~~~~~i~~lP 154 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD---TKFVKIISTQC---IPNYPDKNLP 154 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC---CEEEEEEhHHh---HhhCCCCCCC
Confidence 457889999999876632 2579999999999999999999999999864 99999998753 6889999999
Q ss_pred eEEEEeCCeEeeeecC-------CCCHHHHHHHHHh
Q psy14086 156 TLLWIESGKKLDKFQG-------SRTLETLVNYVSK 184 (324)
Q Consensus 156 ~~~~~~~g~~~~~~~g-------~~~~~~i~~fi~~ 184 (324)
|+++|++|+.+.++.| .++.++|..++.+
T Consensus 155 Tlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 155 TILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 9999999998877775 3678888877754
No 124
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.50 E-value=2.5e-13 Score=101.59 Aligned_cols=97 Identities=11% Similarity=0.347 Sum_probs=79.8
Q ss_pred hHHHHh-cC-CCEEEEEeCCCCHhHhhHHHHHH---HHHHhcCCCCCeEEEEeccccc-------------hhhhhhCCc
Q psy14086 90 SFEKYV-SL-GNHFVKFYAPWCGHCQSLAPVWQ---ELASHFKTEEDVSIAKIDCTQH-------------RSICQSFDI 151 (324)
Q Consensus 90 ~f~~~~-~~-~~~~v~f~~~~c~~c~~~~~~~~---~la~~~~~~~~i~~~~vd~~~~-------------~~~~~~~~i 151 (324)
.+.... ++ ++++|.||++||++|+.+.+.+. .+...+.+ .+.++.+|.+.. ..++.+|+|
T Consensus 5 ~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 5 DLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA--HFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh--heEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 344444 44 57899999999999999999885 56666655 688999988754 689999999
Q ss_pred cccceEEEEeCC--eEeeeecCCCCHHHHHHHHHhhhCC
Q psy14086 152 KSYPTLLWIESG--KKLDKFQGSRTLETLVNYVSKMKGP 188 (324)
Q Consensus 152 ~~~P~~~~~~~g--~~~~~~~g~~~~~~i~~fi~~~~~~ 188 (324)
+++|++++++++ +...++.|..+.+.+.++|+..+.+
T Consensus 83 ~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 83 RFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred ccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 999999999874 7777899999999999999988763
No 125
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.50 E-value=1.5e-13 Score=99.15 Aligned_cols=87 Identities=15% Similarity=0.230 Sum_probs=75.9
Q ss_pred CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCC--ccceEEEEec--Ceeeeee
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD--GFPSIYVYKN--GVRTAEY 300 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~--~~P~l~~~~~--g~~~~~~ 300 (324)
+.++++.|+++||++|+.+.|.++++|.+ +++ ++.|+++|++. ++.+++.+++. ++|++++++. |+++...
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~-~~~--~v~f~~vd~~~--~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~ 86 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKK-FKG--KLLFVVVDADD--FGRHLEYFGLKEEDLPVIAIINLSDGKKYLMP 86 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHH-hCC--eEEEEEEchHh--hHHHHHHcCCChhhCCEEEEEecccccccCCC
Confidence 56899999999999999999999999966 554 69999999999 88999999999 9999999987 6665544
Q ss_pred cCCCCHHHHHHHHHhh
Q psy14086 301 NGSRDLEELYQFILKH 316 (324)
Q Consensus 301 ~g~~~~~~l~~fi~~~ 316 (324)
.|..+.+.|.+||.+.
T Consensus 87 ~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 87 EEELTAESLEEFVEDF 102 (103)
T ss_pred ccccCHHHHHHHHHhh
Confidence 4556999999999875
No 126
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.48 E-value=2.1e-13 Score=108.56 Aligned_cols=98 Identities=20% Similarity=0.343 Sum_probs=81.2
Q ss_pred CCeeEecccccccccc--C--CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCc
Q psy14086 209 EPVVSLTSENFNDVIK--S--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG 284 (324)
Q Consensus 209 ~~v~~l~~~~~~~~~~--~--~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~ 284 (324)
+.|..++..+|...+. + ..|+|.||++||++|+.+.|.|+++|.+ +. .+.|+++|++. . ...|++.+
T Consensus 82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k-~~---~vkFvkI~ad~--~---~~~~~i~~ 152 (192)
T cd02988 82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARK-FP---DTKFVKIISTQ--C---IPNYPDKN 152 (192)
T ss_pred CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHH-CC---CCEEEEEEhHH--h---HhhCCCCC
Confidence 7899999999886553 2 2699999999999999999999999976 33 48999999765 2 47899999
Q ss_pred cceEEEEecCeeeeeecC-------CCCHHHHHHHHHh
Q psy14086 285 FPSIYVYKNGVRTAEYNG-------SRDLEELYQFILK 315 (324)
Q Consensus 285 ~P~l~~~~~g~~~~~~~g-------~~~~~~l~~fi~~ 315 (324)
+||+++|++|+.+..+.| ..+.+.|..+|.+
T Consensus 153 lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 153 LPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 999999999988776665 3677888887764
No 127
>KOG1731|consensus
Probab=99.48 E-value=1.9e-13 Score=120.70 Aligned_cols=220 Identities=20% Similarity=0.369 Sum_probs=138.1
Q ss_pred CCCCCceEcChhhHHHHhcCC--CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCC-CeEEEEeccc--cchhhhhhCCcc
Q psy14086 78 IVNEGLVELTEESFEKYVSLG--NHFVKFYAPWCGHCQSLAPVWQELASHFKTEE-DVSIAKIDCT--QHRSICQSFDIK 152 (324)
Q Consensus 78 ~~~~~~~~l~~~~f~~~~~~~--~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~-~i~~~~vd~~--~~~~~~~~~~i~ 152 (324)
.+.+++..|+.++|...+... .++|.||++||++|++++|.|+++|+...... -+.++.|||. ++..+|+.|+|+
T Consensus 36 ~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~ 115 (606)
T KOG1731|consen 36 SPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVS 115 (606)
T ss_pred CCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCC
Confidence 345789999999999988444 47999999999999999999999999987753 4789999997 678999999999
Q ss_pred ccceEEEEeCCeEe----eeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecccc----cccccc
Q psy14086 153 SYPTLLWIESGKKL----DKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSEN----FNDVIK 224 (324)
Q Consensus 153 ~~P~~~~~~~g~~~----~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~~~~~ 224 (324)
++|++.+|..+... ..+.|.....+|.+.+.+.+...-.. ...+. | +..-.+.+.+ +.+.+.
T Consensus 116 ~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~-----~~~~~---W--P~f~pl~~~~~~~~l~~~~~ 185 (606)
T KOG1731|consen 116 GYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQ-----NRYPS---W--PNFDPLKDTTTLEELDEGIS 185 (606)
T ss_pred CCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhh-----hcCCC---C--CCCCCCCCcchHHHHhcccc
Confidence 99999999775322 23556667888888888776533110 00001 1 1111222222 222222
Q ss_pred CC--cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecC
Q psy14086 225 SG--TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNG 302 (324)
Q Consensus 225 ~~--~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g 302 (324)
+. -+.|.|-.. ...--+..+-.. ... ..+.+..+-.++ +-.+.+ ++++..|...+|++|+....+..
T Consensus 186 ~~~~yvAiv~e~~------~s~lg~~~~l~~-l~~-~~v~vr~~~d~q--~~~~~~-l~~~~~~~~llfrnG~~q~l~~~ 254 (606)
T KOG1731|consen 186 TTANYVAIVFETE------PSDLGWANLLND-LPS-KQVGVRARLDTQ--NFPLFG-LKPDNFPLALLFRNGEQQPLWPS 254 (606)
T ss_pred cccceeEEEEecC------CcccHHHHHHhh-ccC-CCcceEEEecch--hccccc-cCCCCchhhhhhcCCcccccccc
Confidence 22 355555321 111223333322 221 123333333333 334445 88999999999999977544544
Q ss_pred CCCHHHHHHHHHhhcc
Q psy14086 303 SRDLEELYQFILKHKV 318 (324)
Q Consensus 303 ~~~~~~l~~fi~~~~~ 318 (324)
..+.+...+-|.+.++
T Consensus 255 ~~s~~~y~~~I~~~lg 270 (606)
T KOG1731|consen 255 SSSRSAYVKKIDDLLG 270 (606)
T ss_pred cccHHHHHHHHHHHhc
Confidence 4455455555555444
No 128
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.48 E-value=4.8e-13 Score=92.20 Aligned_cols=79 Identities=24% Similarity=0.413 Sum_probs=71.0
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHH
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVN 180 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~ 180 (324)
+..|+++||++|+.+.+.+++++..++. .+.+..+|.++++.+++++|++++|++++ +|+ .++.|..+.++|.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~ 76 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVE 76 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHH
Confidence 6789999999999999999999999976 69999999999999999999999999986 564 36889999999999
Q ss_pred HHHhh
Q psy14086 181 YVSKM 185 (324)
Q Consensus 181 fi~~~ 185 (324)
++...
T Consensus 77 ~l~~~ 81 (82)
T TIGR00411 77 AIKKR 81 (82)
T ss_pred HHHhh
Confidence 98765
No 129
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.43 E-value=1e-12 Score=98.31 Aligned_cols=91 Identities=15% Similarity=0.293 Sum_probs=73.4
Q ss_pred CcEEEEEeCCCChhhhhhhHhHH---HHHHHhhcCCCCeEEEEEecCCc-----------cchhhhhhcCCCccceEEEE
Q psy14086 226 GTVFIKFFAPWCGHCKRLAPTWE---ELGTKLLDNKHGIVIAKVDCTQE-----------LSKDLCNQEGVDGFPSIYVY 291 (324)
Q Consensus 226 ~~~~v~f~~~~c~~C~~~~~~~~---~~a~~~~~~~~~~~~~~id~~~~-----------~~~~~~~~~~i~~~P~l~~~ 291 (324)
++++|.||++||++|+.+.+.+. .+. +.+.. ++.+..+|++.. ...++..+|+|.++|++++|
T Consensus 15 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~--~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~ 91 (125)
T cd02951 15 KPLLLLFSQPGCPYCDKLKRDYLNDPAVQ-AYIRA--HFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIFL 91 (125)
T ss_pred CcEEEEEeCCCCHHHHHHHHHhcCcHHHH-HHHHh--heEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEEE
Confidence 58999999999999999999885 454 32333 588888988751 12678899999999999999
Q ss_pred ec--CeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086 292 KN--GVRTAEYNGSRDLEELYQFILKHKVE 319 (324)
Q Consensus 292 ~~--g~~~~~~~g~~~~~~l~~fi~~~~~~ 319 (324)
.. |+.+..+.|..+.+.+.++|+..++.
T Consensus 92 ~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 92 DPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred cCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 75 57777889999999999999887654
No 130
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.41 E-value=2e-11 Score=113.98 Aligned_cols=182 Identities=17% Similarity=0.247 Sum_probs=142.8
Q ss_pred EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEe-CCeE-eeeecCCCCHHH
Q psy14086 100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE-SGKK-LDKFQGSRTLET 177 (324)
Q Consensus 100 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~-~g~~-~~~~~g~~~~~~ 177 (324)
.++.|+.+.|..|..+...+++++.. .+ ++.+...|...+...+++|+++..|++.+++ +|+. -.+|.|-..-.+
T Consensus 369 ~l~~~~~~~~~~~~e~~~~l~e~~~~-s~--~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~E 445 (555)
T TIGR03143 369 TLLLFLDGSNEKSAELQSFLGEFASL-SE--KLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGHE 445 (555)
T ss_pred EEEEEECCCchhhHHHHHHHHHHHhc-CC--cEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccHh
Confidence 57889899999999999999999954 33 7988888888889999999999999999996 4433 367999988899
Q ss_pred HHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecccccccccc-CCc-EEEEEeCCCChhhhhhhHhHHHHHHHhh
Q psy14086 178 LVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIK-SGT-VFIKFFAPWCGHCKRLAPTWEELGTKLL 255 (324)
Q Consensus 178 i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~-~~v~f~~~~c~~C~~~~~~~~~~a~~~~ 255 (324)
+..||...+.-. ..-..|+.+..+.+-. +++ .+-.|.+++|+.|......+++++.. .
T Consensus 446 f~s~i~~i~~~~-------------------~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~-~ 505 (555)
T TIGR03143 446 LNSFILALYNAA-------------------GPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASL-N 505 (555)
T ss_pred HHHHHHHHHHhc-------------------CCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHh-C
Confidence 999999887632 1222334444333322 244 46677899999999999999999844 2
Q ss_pred cCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHH
Q psy14086 256 DNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313 (324)
Q Consensus 256 ~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi 313 (324)
+++..-.+|... .+++.++|+|.++|++++ +|+.+ +.|..+.+++.+||
T Consensus 506 ---~~i~~~~i~~~~--~~~~~~~~~v~~vP~~~i--~~~~~--~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 506 ---PNVEAEMIDVSH--FPDLKDEYGIMSVPAIVV--DDQQV--YFGKKTIEEMLELI 554 (555)
T ss_pred ---CCceEEEEECcc--cHHHHHhCCceecCEEEE--CCEEE--EeeCCCHHHHHHhh
Confidence 258888899998 899999999999999966 55543 67988999999886
No 131
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.40 E-value=3.5e-12 Score=87.88 Aligned_cols=80 Identities=23% Similarity=0.385 Sum_probs=68.5
Q ss_pred EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHH
Q psy14086 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLE 307 (324)
Q Consensus 228 ~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~ 307 (324)
.+..|+++||++|+.+.|.+++++.+ +.. .+.+..+|.+. ++++.+++++.++|++++ +|+. .+.|..+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~-~~~--~~~~~~vd~~~--~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~ 72 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKE-MGD--AVEVEYINVME--NPQKAMEYGIMAVPAIVI--NGDV--EFIGAPTKE 72 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHH-hcC--ceEEEEEeCcc--CHHHHHHcCCccCCEEEE--CCEE--EEecCCCHH
Confidence 46789999999999999999999955 443 58899999988 889999999999999976 6653 678988999
Q ss_pred HHHHHHHhh
Q psy14086 308 ELYQFILKH 316 (324)
Q Consensus 308 ~l~~fi~~~ 316 (324)
.+.++|.+.
T Consensus 73 ~l~~~l~~~ 81 (82)
T TIGR00411 73 ELVEAIKKR 81 (82)
T ss_pred HHHHHHHhh
Confidence 999998765
No 132
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.37 E-value=3.5e-12 Score=92.86 Aligned_cols=91 Identities=21% Similarity=0.344 Sum_probs=72.0
Q ss_pred ChhhHHHHhc---CCCEEEEEeC-------CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-------chhhhhhC
Q psy14086 87 TEESFEKYVS---LGNHFVKFYA-------PWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-------HRSICQSF 149 (324)
Q Consensus 87 ~~~~f~~~~~---~~~~~v~f~~-------~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-------~~~~~~~~ 149 (324)
+.++|.+.+. +++++|.||+ +||++|+.+.|.+++++.++.+ ++.|+.||++. +..+...+
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCcccccCcchhhHhcc
Confidence 3456666664 4578999999 9999999999999999999986 69999999975 45899999
Q ss_pred Ccc-ccceEEEEeCCeEeeeecCC--CCHHHHHHHH
Q psy14086 150 DIK-SYPTLLWIESGKKLDKFQGS--RTLETLVNYV 182 (324)
Q Consensus 150 ~i~-~~P~~~~~~~g~~~~~~~g~--~~~~~i~~fi 182 (324)
+|. ++||+++|+.|+.+ .|. .+.+.+..|+
T Consensus 86 ~I~~~iPT~~~~~~~~~l---~~~~c~~~~~~~~~~ 118 (119)
T cd02952 86 KLTTGVPTLLRWKTPQRL---VEDECLQADLVEMFF 118 (119)
T ss_pred CcccCCCEEEEEcCCcee---cchhhcCHHHHHHhh
Confidence 998 99999999877543 332 3555555543
No 133
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.36 E-value=3.7e-12 Score=92.74 Aligned_cols=94 Identities=20% Similarity=0.401 Sum_probs=71.0
Q ss_pred ccccccccc---CCcEEEEEeC-------CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-----cchhhhhhc
Q psy14086 216 SENFNDVIK---SGTVFIKFFA-------PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-----LSKDLCNQE 280 (324)
Q Consensus 216 ~~~~~~~~~---~~~~~v~f~~-------~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-----~~~~~~~~~ 280 (324)
.++|.+.+. +++++|.||+ +||++|+.+.|.+++++.+ +.. ++.|+.+|++.. .+.++...+
T Consensus 9 ~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~-~~~--~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 9 YEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKA-APE--DCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred HHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHH-CCC--CCEEEEEEcCCcccccCcchhhHhcc
Confidence 345666664 3589999999 9999999999999999955 443 589999998751 146888999
Q ss_pred CCC-ccceEEEEecCeeeeeecCCCCHHHHHHHH
Q psy14086 281 GVD-GFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313 (324)
Q Consensus 281 ~i~-~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi 313 (324)
+|. ++||+++|+.|+++...+ =.+.+.+..|+
T Consensus 86 ~I~~~iPT~~~~~~~~~l~~~~-c~~~~~~~~~~ 118 (119)
T cd02952 86 KLTTGVPTLLRWKTPQRLVEDE-CLQADLVEMFF 118 (119)
T ss_pred CcccCCCEEEEEcCCceecchh-hcCHHHHHHhh
Confidence 998 999999998876653222 14566666554
No 134
>PTZ00062 glutaredoxin; Provisional
Probab=99.34 E-value=6.8e-12 Score=100.19 Aligned_cols=88 Identities=14% Similarity=0.198 Sum_probs=73.8
Q ss_pred ccccccccc--CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEec
Q psy14086 216 SENFNDVIK--SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKN 293 (324)
Q Consensus 216 ~~~~~~~~~--~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~ 293 (324)
.+.+.+.+. .+.++++|+++||++|+.+.|.+.+++.+ +. .+.|+.+|++ ++|.++|++++|++
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~-~~---~~~F~~V~~d----------~~V~~vPtfv~~~~ 71 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVED-FP---SLEFYVVNLA----------DANNEYGVFEFYQN 71 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHH-CC---CcEEEEEccc----------cCcccceEEEEEEC
Confidence 345666666 46799999999999999999999999966 43 5999999844 89999999999999
Q ss_pred CeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086 294 GVRTAEYNGSRDLEELYQFILKHKV 318 (324)
Q Consensus 294 g~~~~~~~g~~~~~~l~~fi~~~~~ 318 (324)
|+.+.++.|. +...|..++.++.+
T Consensus 72 g~~i~r~~G~-~~~~~~~~~~~~~~ 95 (204)
T PTZ00062 72 SQLINSLEGC-NTSTLVSFIRGWAQ 95 (204)
T ss_pred CEEEeeeeCC-CHHHHHHHHHHHcC
Confidence 9999899986 67888888877644
No 135
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.30 E-value=6.6e-11 Score=110.56 Aligned_cols=159 Identities=19% Similarity=0.256 Sum_probs=128.4
Q ss_pred CCCceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceE
Q psy14086 6 EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVE 85 (324)
Q Consensus 6 ~~~~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (324)
-+++|.+...|..++++++++|+|...|++.+++.++....++|.|....++|.+|+...+.. ...-..
T Consensus 394 ~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~Ef~s~i~~i~~~-----------~~~~~~ 462 (555)
T TIGR03143 394 LSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGHELNSFILALYNA-----------AGPGQP 462 (555)
T ss_pred cCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccHhHHHHHHHHHHh-----------cCCCCC
Confidence 357899999999999999999999999999999644424468999999999998888876643 113445
Q ss_pred cChhhHHHHhc-CCC-EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCC
Q psy14086 86 LTEESFEKYVS-LGN-HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG 163 (324)
Q Consensus 86 l~~~~f~~~~~-~~~-~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g 163 (324)
|+++..+.+.. +++ .+-.|.+++|++|.+....+++++.... ++..-.+|...+++++++|+|.++|++++ +|
T Consensus 463 l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~---~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~ 537 (555)
T TIGR03143 463 LGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP---NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DD 537 (555)
T ss_pred CCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC---CceEEEEECcccHHHHHhCCceecCEEEE--CC
Confidence 66666555542 344 4677899999999999999999999865 49999999999999999999999999987 45
Q ss_pred eEeeeecCCCCHHHHHHHH
Q psy14086 164 KKLDKFQGSRTLETLVNYV 182 (324)
Q Consensus 164 ~~~~~~~g~~~~~~i~~fi 182 (324)
+.. +.|..+.++|.+||
T Consensus 538 ~~~--~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 538 QQV--YFGKKTIEEMLELI 554 (555)
T ss_pred EEE--EeeCCCHHHHHHhh
Confidence 433 77988999999886
No 136
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.27 E-value=1.3e-10 Score=85.53 Aligned_cols=106 Identities=16% Similarity=0.231 Sum_probs=90.5
Q ss_pred ceEcChhhHHHHhcCCCEEEEEeCCC---CHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086 83 LVELTEESFEKYVSLGNHFVKFYAPW---CGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW 159 (324)
Q Consensus 83 ~~~l~~~~f~~~~~~~~~~v~f~~~~---c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~ 159 (324)
...++..+++.++......|.|.+.. ++.+....-.+.+++++|.+ .++.|++||+++++.++.+|||.++||+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~-~~v~~akVDiD~~~~LA~~fgV~siPTLl~ 97 (132)
T PRK11509 19 WTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD-YTWQVAIADLEQSEAIGDRFGVFRFPATLV 97 (132)
T ss_pred CCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC-CceEEEEEECCCCHHHHHHcCCccCCEEEE
Confidence 45566678888886666566666533 67778888899999999974 259999999999999999999999999999
Q ss_pred EeCCeEeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086 160 IESGKKLDKFQGSRTLETLVNYVSKMKGPL 189 (324)
Q Consensus 160 ~~~g~~~~~~~g~~~~~~i~~fi~~~~~~~ 189 (324)
|++|+.+.+..|..+.+++.+||.+++...
T Consensus 98 FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 98 FTGGNYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred EECCEEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 999999999999999999999999998843
No 137
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.25 E-value=6e-11 Score=79.99 Aligned_cols=72 Identities=14% Similarity=0.293 Sum_probs=60.0
Q ss_pred EEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCC-CCHHHHHH
Q psy14086 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGS-RTLETLVN 180 (324)
Q Consensus 102 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~-~~~~~i~~ 180 (324)
|.||++||++|+.+.|.++++++++.. .+.|..+| +.+.+.++|+.++|++++ +|+.. +.|. .+.+.|.+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~ 73 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKE 73 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHH
Confidence 789999999999999999999999976 78998887 234578899999999998 77655 6775 45678877
Q ss_pred HH
Q psy14086 181 YV 182 (324)
Q Consensus 181 fi 182 (324)
++
T Consensus 74 ~l 75 (76)
T TIGR00412 74 IL 75 (76)
T ss_pred Hh
Confidence 75
No 138
>PHA02125 thioredoxin-like protein
Probab=99.24 E-value=8.6e-11 Score=79.11 Aligned_cols=70 Identities=26% Similarity=0.570 Sum_probs=57.3
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCC-CCHHHHH
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGS-RTLETLV 179 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~-~~~~~i~ 179 (324)
+++|+++||++|+.+.|.|+++. +.++.+|++++.+++++|+|.++|+++ .|+...++.|. .+..+|.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~ 70 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELK 70 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHH
Confidence 68999999999999999997653 468899999999999999999999987 56666678885 4445555
Q ss_pred HH
Q psy14086 180 NY 181 (324)
Q Consensus 180 ~f 181 (324)
+-
T Consensus 71 ~~ 72 (75)
T PHA02125 71 EK 72 (75)
T ss_pred HH
Confidence 43
No 139
>PHA02125 thioredoxin-like protein
Probab=99.24 E-value=7.4e-11 Score=79.42 Aligned_cols=69 Identities=23% Similarity=0.527 Sum_probs=55.6
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCC-CCHH
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGS-RDLE 307 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~-~~~~ 307 (324)
++.||++||++|+.+.|.+++++ +.++.+|.+. +.+++++|+|.++||++ +|+.+..+.|. .+..
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~--~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~ 67 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDE--GVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVA 67 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCC--CHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHH
Confidence 68999999999999999987653 3578888888 88999999999999997 67666677785 3445
Q ss_pred HHHH
Q psy14086 308 ELYQ 311 (324)
Q Consensus 308 ~l~~ 311 (324)
+|.+
T Consensus 68 ~l~~ 71 (75)
T PHA02125 68 ELKE 71 (75)
T ss_pred HHHH
Confidence 5544
No 140
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.23 E-value=3.9e-11 Score=87.89 Aligned_cols=84 Identities=21% Similarity=0.471 Sum_probs=62.5
Q ss_pred CCCEEEEEeCCCCHhHhhHHHHHHH---HHHhcCCCCCeEEEEeccccc--------------------hhhhhhCCccc
Q psy14086 97 LGNHFVKFYAPWCGHCQSLAPVWQE---LASHFKTEEDVSIAKIDCTQH--------------------RSICQSFDIKS 153 (324)
Q Consensus 97 ~~~~~v~f~~~~c~~c~~~~~~~~~---la~~~~~~~~i~~~~vd~~~~--------------------~~~~~~~~i~~ 153 (324)
+++.+++|+++||++|+.+.+.+.. +...++. ++.++.+++... ..+++.+||++
T Consensus 5 ~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 5 GKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp SSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 4567999999999999999998885 5555554 577777776532 35889999999
Q ss_pred cceEEEEe-CCeEeeeecCCCCHHHHHHHH
Q psy14086 154 YPTLLWIE-SGKKLDKFQGSRTLETLVNYV 182 (324)
Q Consensus 154 ~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi 182 (324)
+|++++++ +|+.+.++.|..+.++|.+++
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999997 488787899999999998875
No 141
>KOG1731|consensus
Probab=99.22 E-value=8.3e-12 Score=110.55 Aligned_cols=111 Identities=23% Similarity=0.617 Sum_probs=90.3
Q ss_pred CCCeeEeccccccccccCC--cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCcc
Q psy14086 208 PEPVVSLTSENFNDVIKSG--TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGF 285 (324)
Q Consensus 208 ~~~v~~l~~~~~~~~~~~~--~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~ 285 (324)
..+|..|+..+|...+.+. -.+|.||+.|||+|+++.|.|+++|.+...=..-+.++.|||....|..+|..|+|+++
T Consensus 38 ~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~ 117 (606)
T KOG1731|consen 38 DDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGY 117 (606)
T ss_pred CCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCC
Confidence 3789999999999988664 58999999999999999999999997755444458999999988779999999999999
Q ss_pred ceEEEEecCeee----eeecCCCCHHHHHHHHHhhcc
Q psy14086 286 PSIYVYKNGVRT----AEYNGSRDLEELYQFILKHKV 318 (324)
Q Consensus 286 P~l~~~~~g~~~----~~~~g~~~~~~l~~fi~~~~~ 318 (324)
|+|.+|+.+-.. ..+.|.....++.+.+.+.+.
T Consensus 118 Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la 154 (606)
T KOG1731|consen 118 PTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLA 154 (606)
T ss_pred ceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHH
Confidence 999999654221 245566667777777766543
No 142
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.21 E-value=3e-10 Score=87.02 Aligned_cols=87 Identities=21% Similarity=0.335 Sum_probs=65.0
Q ss_pred CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc----------chhhh-hhC---CccccceEEEEeC
Q psy14086 97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----------HRSIC-QSF---DIKSYPTLLWIES 162 (324)
Q Consensus 97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~----------~~~~~-~~~---~i~~~P~~~~~~~ 162 (324)
.+..+|.||++||++|++..|.+++++++++- .+..+.+|... ..... ..+ ++.++|+.++++.
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~--~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGL--PVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCC--cEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 44569999999999999999999999999843 44444454321 12222 345 7889999999976
Q ss_pred -CeE-eeeecCCCCHHHHHHHHHhh
Q psy14086 163 -GKK-LDKFQGSRTLETLVNYVSKM 185 (324)
Q Consensus 163 -g~~-~~~~~g~~~~~~i~~fi~~~ 185 (324)
|+. ..++.|..+.+++.+.|.+.
T Consensus 128 ~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 128 NTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCEEEEEeecccCHHHHHHHHHHh
Confidence 453 44688999999999888765
No 143
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.21 E-value=3.7e-11 Score=88.19 Aligned_cols=96 Identities=15% Similarity=0.333 Sum_probs=65.5
Q ss_pred hhHHHHh-cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch-hhhhhCCccc--cceEEEEe-CC
Q psy14086 89 ESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR-SICQSFDIKS--YPTLLWIE-SG 163 (324)
Q Consensus 89 ~~f~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~-~~~~~~~i~~--~P~~~~~~-~g 163 (324)
+.+.... ++++++|.||++||++|+.+.|.+.+.+..... ...|+.+|.+.+. ...+.|++.+ +|++++++ +|
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~--~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~G 87 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL--SHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSG 87 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh--cCcEEEEEecCCCCchhhhcccCCCccceEEEECCCC
Confidence 3444333 456899999999999999999999998776543 3445555555443 4567888876 99999997 57
Q ss_pred eEee---eecCCCCHHHHHHHHHhhh
Q psy14086 164 KKLD---KFQGSRTLETLVNYVSKMK 186 (324)
Q Consensus 164 ~~~~---~~~g~~~~~~i~~fi~~~~ 186 (324)
+... ...|..+.+.+..++....
T Consensus 88 k~~~~~~~~~~~~~~~~f~~~~~~~~ 113 (117)
T cd02959 88 DVHPEIINKKGNPNYKYFYSSAAQVT 113 (117)
T ss_pred CCchhhccCCCCccccccCCCHHHHH
Confidence 6654 3345555555555554443
No 144
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.20 E-value=2.4e-10 Score=84.06 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=84.9
Q ss_pred eeEeccccccccccCCcEEEEEeCCC---ChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccce
Q psy14086 211 VVSLTSENFNDVIKSGTVFIKFFAPW---CGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287 (324)
Q Consensus 211 v~~l~~~~~~~~~~~~~~~v~f~~~~---c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~ 287 (324)
...++..+++.++......|.|.+.. ++.+....-++.+++.+ +.. .++.++++|++. +++++.+|||.++||
T Consensus 19 ~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e-~~~-~~v~~akVDiD~--~~~LA~~fgV~siPT 94 (132)
T PRK11509 19 WTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLRE-FPD-YTWQVAIADLEQ--SEAIGDRFGVFRFPA 94 (132)
T ss_pred CCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHH-hcC-CceEEEEEECCC--CHHHHHHcCCccCCE
Confidence 44455678888887665444454432 45666788899999966 442 259999999999 999999999999999
Q ss_pred EEEEecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086 288 IYVYKNGVRTAEYNGSRDLEELYQFILKHKVE 319 (324)
Q Consensus 288 l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~ 319 (324)
+++|++|+.+....|..+.+.+.+||.+.+..
T Consensus 95 Ll~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 95 TLVFTGGNYRGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred EEEEECCEEEEEEeCcCCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999988764
No 145
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.18 E-value=4.7e-11 Score=87.61 Aligned_cols=89 Identities=18% Similarity=0.357 Sum_probs=61.5
Q ss_pred CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCc--cceEEEEe-cCeeee---
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG--FPSIYVYK-NGVRTA--- 298 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~--~P~l~~~~-~g~~~~--- 298 (324)
+++++|.||++||++|+.+.|.+.+.+.. ... ...|+.++.+.. .....+.+++.+ +|++++|. +|+...
T Consensus 19 ~kpVlV~F~a~WC~~C~~~~~~~~~~~~~-~~~--~~~fv~v~vd~~-~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~ 94 (117)
T cd02959 19 GKPLMLLIHKTWCGACKALKPKFAESKEI-SEL--SHNFVMVNLEDD-EEPKDEEFSPDGGYIPRILFLDPSGDVHPEII 94 (117)
T ss_pred CCcEEEEEeCCcCHHHHHHHHHHhhhHHH-Hhh--cCcEEEEEecCC-CCchhhhcccCCCccceEEEECCCCCCchhhc
Confidence 46899999999999999999999987743 222 234555565551 123456788876 99999995 787643
Q ss_pred eecCCCCHHHHHHHHHhhc
Q psy14086 299 EYNGSRDLEELYQFILKHK 317 (324)
Q Consensus 299 ~~~g~~~~~~l~~fi~~~~ 317 (324)
...|..+.+.+.++|....
T Consensus 95 ~~~~~~~~~~f~~~~~~~~ 113 (117)
T cd02959 95 NKKGNPNYKYFYSSAAQVT 113 (117)
T ss_pred cCCCCccccccCCCHHHHH
Confidence 3446566666666555443
No 146
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.18 E-value=3.2e-10 Score=95.50 Aligned_cols=90 Identities=16% Similarity=0.290 Sum_probs=72.6
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc---------chhhhhhCCccccceEEEEeC-CeE
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ---------HRSICQSFDIKSYPTLLWIES-GKK 165 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~---------~~~~~~~~~i~~~P~~~~~~~-g~~ 165 (324)
.++..+|.||++||++|+.+.|.+++++++++- .+..+.+|... +..++++|||+++|+++++++ |+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~--~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGI--EVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcCc--EEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 456789999999999999999999999999853 45555555432 356889999999999999987 544
Q ss_pred e-eeecCCCCHHHHHHHHHhhhC
Q psy14086 166 L-DKFQGSRTLETLVNYVSKMKG 187 (324)
Q Consensus 166 ~-~~~~g~~~~~~i~~fi~~~~~ 187 (324)
+ ....|..+.++|.+.|.....
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhc
Confidence 4 345689999999999987765
No 147
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.18 E-value=1.5e-10 Score=78.05 Aligned_cols=72 Identities=19% Similarity=0.328 Sum_probs=56.7
Q ss_pred EEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCC-CCHHH
Q psy14086 230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGS-RDLEE 308 (324)
Q Consensus 230 v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~-~~~~~ 308 (324)
|.||++||++|+.+.|.+++++.+ +.. .+.+..+| . .+.+.++++.++|++++ +|+.+ +.|. .+.+.
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e-~~~--~~~~~~v~--~---~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~ 70 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEE-LGI--DAEFEKVT--D---MNEILEAGVTATPGVAV--DGELV--IMGKIPSKEE 70 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHH-cCC--CeEEEEeC--C---HHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHH
Confidence 789999999999999999999965 433 57787777 2 33467899999999988 77665 6775 35578
Q ss_pred HHHHH
Q psy14086 309 LYQFI 313 (324)
Q Consensus 309 l~~fi 313 (324)
+.+++
T Consensus 71 l~~~l 75 (76)
T TIGR00412 71 IKEIL 75 (76)
T ss_pred HHHHh
Confidence 87776
No 148
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.17 E-value=2.2e-10 Score=103.84 Aligned_cols=89 Identities=20% Similarity=0.329 Sum_probs=73.1
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEe----------------------------ccccchhhhh
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI----------------------------DCTQHRSICQ 147 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~v----------------------------d~~~~~~~~~ 147 (324)
..++++|.||++||++|+..+|.+++++++++.+ ++.|+.| +++.+..+++
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~-~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 4567899999999999999999999999998732 3555443 2344567889
Q ss_pred hCCccccceEEEEe-CCeEeeeecCCCCHHHHHHHHHhh
Q psy14086 148 SFDIKSYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKM 185 (324)
Q Consensus 148 ~~~i~~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~ 185 (324)
.|+|+++|+++++. +|+.+.++.|..+.++|.++|+..
T Consensus 134 ~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred HcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 99999999997775 588888899999999999999943
No 149
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.15 E-value=4e-10 Score=102.15 Aligned_cols=88 Identities=20% Similarity=0.295 Sum_probs=70.5
Q ss_pred cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEec----------------------------CCccchh
Q psy14086 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC----------------------------TQELSKD 275 (324)
Q Consensus 224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~----------------------------~~~~~~~ 275 (324)
.+++++|.||++||++|+...|.+++++.++... ++.++.|.. +. +..
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~--~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~--~~~ 130 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS--SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDN--GGT 130 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccc--cHH
Confidence 4568999999999999999999999999653222 355544432 22 456
Q ss_pred hhhhcCCCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHh
Q psy14086 276 LCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILK 315 (324)
Q Consensus 276 ~~~~~~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~ 315 (324)
+.+.|+|.++|+++++ ++|+.+..+.|..+.++|.++|+.
T Consensus 131 lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 131 LAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 7889999999999766 689888899999999999999984
No 150
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.13 E-value=4.2e-10 Score=104.80 Aligned_cols=100 Identities=14% Similarity=0.388 Sum_probs=79.4
Q ss_pred ceEc-ChhhHHHHh-----cCCCEEEEEeCCCCHhHhhHHHHH---HHHHHhcCCCCCeEEEEecccc----chhhhhhC
Q psy14086 83 LVEL-TEESFEKYV-----SLGNHFVKFYAPWCGHCQSLAPVW---QELASHFKTEEDVSIAKIDCTQ----HRSICQSF 149 (324)
Q Consensus 83 ~~~l-~~~~f~~~~-----~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~i~~~~vd~~~----~~~~~~~~ 149 (324)
...+ +.+++++.+ ++++++|+||++||++|+.+.+.. .++.+.++ ++.++++|+++ +..++++|
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~~~~~l~~~~ 530 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNAEDVALLKHY 530 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCChhhHHHHHHc
Confidence 3444 355666554 246899999999999999998865 66777775 48899999874 36899999
Q ss_pred CccccceEEEEe-CCeE--eeeecCCCCHHHHHHHHHhh
Q psy14086 150 DIKSYPTLLWIE-SGKK--LDKFQGSRTLETLVNYVSKM 185 (324)
Q Consensus 150 ~i~~~P~~~~~~-~g~~--~~~~~g~~~~~~i~~fi~~~ 185 (324)
++.++|++++|+ +|+. ..++.|..+.+++.+++++.
T Consensus 531 ~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 531 NVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 999999999997 4665 35788999999999999874
No 151
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.13 E-value=7.4e-10 Score=84.88 Aligned_cols=87 Identities=13% Similarity=0.221 Sum_probs=62.5
Q ss_pred CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc----------chhhh-hhc---CCCccceEEE
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL----------SKDLC-NQE---GVDGFPSIYV 290 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~----------~~~~~-~~~---~i~~~P~l~~ 290 (324)
++..+|.||++||++|+...|.++++++++ . +.+..++.+... ..... ..+ ++.++|+.++
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~----~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L 124 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQF-G----LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL 124 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHc-C----CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence 455799999999999999999999999653 2 344444443310 12222 334 7889999999
Q ss_pred Ee-cCee-eeeecCCCCHHHHHHHHHhh
Q psy14086 291 YK-NGVR-TAEYNGSRDLEELYQFILKH 316 (324)
Q Consensus 291 ~~-~g~~-~~~~~g~~~~~~l~~fi~~~ 316 (324)
+. +|+. +..+.|..+.+++.+.|.+.
T Consensus 125 ID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 125 VNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred EeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 95 5554 44678999999998888764
No 152
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.12 E-value=1.7e-10 Score=84.51 Aligned_cols=87 Identities=24% Similarity=0.463 Sum_probs=62.1
Q ss_pred CCcEEEEEeCCCChhhhhhhHhHHHHHH--HhhcCCCCeEEEEEecCCcc------------------chhhhhhcCCCc
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPTWEELGT--KLLDNKHGIVIAKVDCTQEL------------------SKDLCNQEGVDG 284 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~--~~~~~~~~~~~~~id~~~~~------------------~~~~~~~~~i~~ 284 (324)
+++.+++|+++||++|+.+.+.+..... ...+. ++.+..+++.... ..++...++|++
T Consensus 5 ~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 5 GKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp SSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 4679999999999999999888875431 22332 4777777776511 245888999999
Q ss_pred cceEEEEe-cCeeeeeecCCCCHHHHHHHH
Q psy14086 285 FPSIYVYK-NGVRTAEYNGSRDLEELYQFI 313 (324)
Q Consensus 285 ~P~l~~~~-~g~~~~~~~g~~~~~~l~~fi 313 (324)
+|+++++. +|+.+..+.|..+.++|.++|
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999995 788887889999999998875
No 153
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.10 E-value=1.8e-09 Score=85.52 Aligned_cols=106 Identities=22% Similarity=0.445 Sum_probs=79.9
Q ss_pred CCeeEeccccccc-cccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc----------------
Q psy14086 209 EPVVSLTSENFND-VIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---------------- 271 (324)
Q Consensus 209 ~~v~~l~~~~~~~-~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~---------------- 271 (324)
-.+..++++.+.- ...+++++|.||++||++|+...+.+.+++.++... ++.++.++++..
T Consensus 44 ~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vi~i~~d~~~~~~~~~~~~~~~~~~ 121 (173)
T PRK03147 44 FVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK--GVEIIAVNVDETELAVKNFVNRYGLTFP 121 (173)
T ss_pred cEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEEcCCCHHHHHHHHHHhCCCce
Confidence 3455566655431 124568999999999999999999999999664333 477777776531
Q ss_pred ----cchhhhhhcCCCccceEEEEe-cCeeeeeecCCCCHHHHHHHHHhh
Q psy14086 272 ----LSKDLCNQEGVDGFPSIYVYK-NGVRTAEYNGSRDLEELYQFILKH 316 (324)
Q Consensus 272 ----~~~~~~~~~~i~~~P~l~~~~-~g~~~~~~~g~~~~~~l~~fi~~~ 316 (324)
.+..+.+.|++.++|+++++. +|+.+..+.|..+.+++.+++.+.
T Consensus 122 ~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 122 VAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred EEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 145778899999999998885 677777889999999999998754
No 154
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.10 E-value=8.6e-10 Score=76.50 Aligned_cols=77 Identities=18% Similarity=0.263 Sum_probs=64.4
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCH
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTL 175 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~ 175 (324)
.+..-+..|+++||++|....+.+++++..+. ++.+..+|.+..+.++++|||.++|++++ +|+.. +.|..+.
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~--~~G~~~~ 83 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELF--GFGRMTL 83 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEE--EeCCCCH
Confidence 34445889999999999999999999998875 59999999999999999999999999975 66654 4687676
Q ss_pred HHHH
Q psy14086 176 ETLV 179 (324)
Q Consensus 176 ~~i~ 179 (324)
+++.
T Consensus 84 ~e~~ 87 (89)
T cd03026 84 EEIL 87 (89)
T ss_pred HHHh
Confidence 6654
No 155
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.09 E-value=1.4e-09 Score=86.28 Aligned_cols=102 Identities=25% Similarity=0.539 Sum_probs=79.3
Q ss_pred ceEcChhhHHHH-hcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---------------------
Q psy14086 83 LVELTEESFEKY-VSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT--------------------- 140 (324)
Q Consensus 83 ~~~l~~~~f~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~--------------------- 140 (324)
+..++.+.+.-. ..+++++|.||++||++|+...+.+.++++++.+. ++.++.++++
T Consensus 46 ~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~ 124 (173)
T PRK03147 46 LTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK-GVEIIAVNVDETELAVKNFVNRYGLTFPVAI 124 (173)
T ss_pred eecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEEcCCCHHHHHHHHHHhCCCceEEE
Confidence 444444433221 24567899999999999999999999999999752 4777777764
Q ss_pred -cchhhhhhCCccccceEEEEeC-CeEeeeecCCCCHHHHHHHHHhh
Q psy14086 141 -QHRSICQSFDIKSYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKM 185 (324)
Q Consensus 141 -~~~~~~~~~~i~~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~ 185 (324)
.+..+++.|++..+|+++++++ |+....+.|..+.+++.+++.+.
T Consensus 125 d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 125 DKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 2357789999999999999975 77777789999999999998764
No 156
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.08 E-value=1.6e-09 Score=86.59 Aligned_cols=88 Identities=10% Similarity=0.263 Sum_probs=69.6
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc-----------------------hhhhhhCCcc
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH-----------------------RSICQSFDIK 152 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~-----------------------~~~~~~~~i~ 152 (324)
..++++|.||++||++|+..+|.+.+++++ .+.++.|+.+.+ ..+...||+.
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 141 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY 141 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCC
Confidence 456789999999999999999999998753 366666664322 1244578999
Q ss_pred ccceEEEEe-CCeEeeeecCCCCHHHHHHHHHhhhCC
Q psy14086 153 SYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKMKGP 188 (324)
Q Consensus 153 ~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~~ 188 (324)
++|+.++++ +|+...++.|..+.+++.++|+..+..
T Consensus 142 ~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~ 178 (185)
T PRK15412 142 GAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEK 178 (185)
T ss_pred cCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHH
Confidence 999888886 588788889999999999999988763
No 157
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.07 E-value=1.5e-09 Score=91.45 Aligned_cols=90 Identities=18% Similarity=0.240 Sum_probs=69.1
Q ss_pred cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc---------cchhhhhhcCCCccceEEEEec-
Q psy14086 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---------LSKDLCNQEGVDGFPSIYVYKN- 293 (324)
Q Consensus 224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~---------~~~~~~~~~~i~~~P~l~~~~~- 293 (324)
.++.++|+||++||++|+.+.|.+++++.++ ++.+..|+.+.. .+..+.+.++|.++|+++++..
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y-----g~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~ 239 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRY-----GIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPD 239 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHc-----CcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECC
Confidence 3568999999999999999999999999663 244444454431 1246788999999999999975
Q ss_pred Ceee-eeecCCCCHHHHHHHHHhhcc
Q psy14086 294 GVRT-AEYNGSRDLEELYQFILKHKV 318 (324)
Q Consensus 294 g~~~-~~~~g~~~~~~l~~fi~~~~~ 318 (324)
|+.+ ....|..+.++|.+.|.....
T Consensus 240 ~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 240 PNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 5544 345688999999999987654
No 158
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.07 E-value=1.8e-09 Score=85.39 Aligned_cols=89 Identities=26% Similarity=0.414 Sum_probs=68.3
Q ss_pred cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---------------------ccchhhhhhcCC
Q psy14086 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---------------------ELSKDLCNQEGV 282 (324)
Q Consensus 224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---------------------~~~~~~~~~~~i 282 (324)
.+++++|.||++||++|+...|.+++++.+ ++.+..++.+. +....+...|++
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~------~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v 135 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD------GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGV 135 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc------CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCC
Confidence 457899999999999999999999988742 24444444321 013356677899
Q ss_pred CccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086 283 DGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKV 318 (324)
Q Consensus 283 ~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~ 318 (324)
.++|+.+++ ++|+.+..+.|..+.+++.++|.+.+.
T Consensus 136 ~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 136 YGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 999976666 688888888999999999999998764
No 159
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.06 E-value=1.6e-09 Score=86.65 Aligned_cols=89 Identities=19% Similarity=0.315 Sum_probs=68.4
Q ss_pred cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc---------------------cchhhhhhcCC
Q psy14086 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---------------------LSKDLCNQEGV 282 (324)
Q Consensus 224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~---------------------~~~~~~~~~~i 282 (324)
.+++++|.||++||++|+...|.+.++..+ ++.+..++.++. ....+...|++
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~------~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 140 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ------GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV 140 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc------CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence 456899999999999999999999988632 355666664331 01134457899
Q ss_pred CccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086 283 DGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKV 318 (324)
Q Consensus 283 ~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~ 318 (324)
.++|+.+++ ++|+....+.|..+.+.+.++|...++
T Consensus 141 ~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 141 YGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred CcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 999977777 588888889999999999999887765
No 160
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.06 E-value=1.8e-09 Score=79.53 Aligned_cols=96 Identities=16% Similarity=0.169 Sum_probs=67.3
Q ss_pred ChhhHHHHh-cCCCEEEEEeCCCCHhHhhHHHH-H--HHHHHhcCCCCCeEEEEeccccchhhhh--------hCCcccc
Q psy14086 87 TEESFEKYV-SLGNHFVKFYAPWCGHCQSLAPV-W--QELASHFKTEEDVSIAKIDCTQHRSICQ--------SFDIKSY 154 (324)
Q Consensus 87 ~~~~f~~~~-~~~~~~v~f~~~~c~~c~~~~~~-~--~~la~~~~~~~~i~~~~vd~~~~~~~~~--------~~~i~~~ 154 (324)
+++.+.... ++++++|.|+++||++|+.+.+. | .+++..+.. .+.++.+|.++.+++.+ .||+.++
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~ 81 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPDVDKIYMNAAQAMTGQGGW 81 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCC
Confidence 456666665 45678999999999999999763 3 356666654 69999999988777655 3589999
Q ss_pred ceEEEEeC-CeEeeeecC-----CCCHHHHHHHHHh
Q psy14086 155 PTLLWIES-GKKLDKFQG-----SRTLETLVNYVSK 184 (324)
Q Consensus 155 P~~~~~~~-g~~~~~~~g-----~~~~~~i~~fi~~ 184 (324)
|+++++.+ |+.+....+ ..+...+..+++.
T Consensus 82 Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (124)
T cd02955 82 PLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEK 117 (124)
T ss_pred CEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHH
Confidence 99999977 665532221 1334455555554
No 161
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.05 E-value=1.1e-09 Score=82.90 Aligned_cols=71 Identities=17% Similarity=0.318 Sum_probs=55.5
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC------CCeEEEEeccccc-------------------------hh
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTE------EDVSIAKIDCTQH-------------------------RS 144 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~------~~i~~~~vd~~~~-------------------------~~ 144 (324)
+.++++|+|||+||++|+..+|.+.+++++++++ .++.++.|+.+.. ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 4668899999999999999999999998877542 2477777765532 24
Q ss_pred hhhhCCccccceEEEEeCCeEe
Q psy14086 145 ICQSFDIKSYPTLLWIESGKKL 166 (324)
Q Consensus 145 ~~~~~~i~~~P~~~~~~~g~~~ 166 (324)
+++.|++.++|++++++....+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~V 125 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDV 125 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcE
Confidence 6778899999999999874333
No 162
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.05 E-value=6.1e-10 Score=73.30 Aligned_cols=56 Identities=18% Similarity=0.386 Sum_probs=50.9
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW 159 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~ 159 (324)
++.|+++||++|+.+.+.+++++.... ++.|..+|.++++.+++++|+.++|++++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP---NISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC---ceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 678999999999999999999987653 59999999999999999999999999865
No 163
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.05 E-value=1.8e-09 Score=80.94 Aligned_cols=79 Identities=23% Similarity=0.358 Sum_probs=62.0
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEec-----------------------cccchhhhhhCCcc
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID-----------------------CTQHRSICQSFDIK 152 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd-----------------------~~~~~~~~~~~~i~ 152 (324)
..++++|+||++||++|+...|.++++++.++ +.++.|+ ++....+++.|++.
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~----~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~ 99 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR----VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY 99 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC----cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC
Confidence 35578999999999999999999999988762 4444444 23445678889999
Q ss_pred ccceEEEEe-CCeEeeeecCCCCHHHH
Q psy14086 153 SYPTLLWIE-SGKKLDKFQGSRTLETL 178 (324)
Q Consensus 153 ~~P~~~~~~-~g~~~~~~~g~~~~~~i 178 (324)
++|+.++++ +|+...++.|..+.+.|
T Consensus 100 ~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 100 GVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCeEEEECCCceEEEEEeccCChHhc
Confidence 999777775 58878888998887654
No 164
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.04 E-value=1.7e-09 Score=76.58 Aligned_cols=66 Identities=23% Similarity=0.571 Sum_probs=53.3
Q ss_pred CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc-------------------------hhhhhhCCcc
Q psy14086 98 GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH-------------------------RSICQSFDIK 152 (324)
Q Consensus 98 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~-------------------------~~~~~~~~i~ 152 (324)
++++++||++||++|+...|.+.++.++++.+.++.|+.|..++. ..+.+.|+|.
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~ 81 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGIN 81 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-T
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCC
Confidence 467999999999999999999999999999334788888777643 4577788999
Q ss_pred ccceEEEEeCC
Q psy14086 153 SYPTLLWIESG 163 (324)
Q Consensus 153 ~~P~~~~~~~g 163 (324)
++|++++++++
T Consensus 82 ~iP~~~lld~~ 92 (95)
T PF13905_consen 82 GIPTLVLLDPD 92 (95)
T ss_dssp SSSEEEEEETT
T ss_pred cCCEEEEECCC
Confidence 99999999874
No 165
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.04 E-value=2.1e-09 Score=84.96 Aligned_cols=87 Identities=17% Similarity=0.326 Sum_probs=68.5
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc-----------------------ccchhhhhhCCcc
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC-----------------------TQHRSICQSFDIK 152 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~-----------------------~~~~~~~~~~~i~ 152 (324)
.+++++|+||++||++|+...|.++++++. ++.++.|+. +....+.+.|++.
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~ 136 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVY 136 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCe
Confidence 456789999999999999999999998764 244444443 2234566788999
Q ss_pred ccceEEEEe-CCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086 153 SYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKMKG 187 (324)
Q Consensus 153 ~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~ 187 (324)
++|+.++++ +|+...++.|..+.+++.+++.+++.
T Consensus 137 ~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 137 GAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 999877775 58777788899999999999998764
No 166
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.03 E-value=2e-09 Score=80.13 Aligned_cols=81 Identities=20% Similarity=0.343 Sum_probs=64.0
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc---------------------ccchhhhhhCCcccc
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC---------------------TQHRSICQSFDIKSY 154 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~---------------------~~~~~~~~~~~i~~~ 154 (324)
..+++++.||++||++|..+.|.+.++++.+. +..+.+|. +.+..+++.|+|.++
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~ 94 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP----VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVT 94 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC----EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcc
Confidence 34578999999999999999999999988742 33333321 244679999999999
Q ss_pred ceEEEEeCCeEeeeecCCCCHHHHHH
Q psy14086 155 PTLLWIESGKKLDKFQGSRTLETLVN 180 (324)
Q Consensus 155 P~~~~~~~g~~~~~~~g~~~~~~i~~ 180 (324)
|+++++++++...++.|..+.+.|.+
T Consensus 95 P~~~vid~~gi~~~~~g~~~~~~~~~ 120 (123)
T cd03011 95 PAIVIVDPGGIVFVTTGVTSEWGLRL 120 (123)
T ss_pred cEEEEEcCCCeEEEEeccCCHHHHHh
Confidence 99999988666667889899988865
No 167
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.03 E-value=1.3e-09 Score=101.66 Aligned_cols=88 Identities=22% Similarity=0.406 Sum_probs=70.9
Q ss_pred CCcEEEEEeCCCChhhhhhhHhH---HHHHHHhhcCCCCeEEEEEecCCc--cchhhhhhcCCCccceEEEEe-cCee--
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPTW---EELGTKLLDNKHGIVIAKVDCTQE--LSKDLCNQEGVDGFPSIYVYK-NGVR-- 296 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~~---~~~a~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~i~~~P~l~~~~-~g~~-- 296 (324)
+++++|+||++||++|+.+.+.. .++.+. ++ ++.++.+|+++. ++.++.++|++.++|++++|+ +|+.
T Consensus 474 gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~-l~---~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~ 549 (571)
T PRK00293 474 GKPVMLDLYADWCVACKEFEKYTFSDPQVQQA-LA---DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIP 549 (571)
T ss_pred CCcEEEEEECCcCHhHHHHHHHhcCCHHHHHH-hc---CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCcc
Confidence 36899999999999999988764 455533 33 488999998762 245788999999999999996 6776
Q ss_pred eeeecCCCCHHHHHHHHHhh
Q psy14086 297 TAEYNGSRDLEELYQFILKH 316 (324)
Q Consensus 297 ~~~~~g~~~~~~l~~fi~~~ 316 (324)
..++.|..+.+++.+++++.
T Consensus 550 ~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 550 DARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred cccccCCCCHHHHHHHHHHh
Confidence 35778999999999999875
No 168
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.03 E-value=3.2e-08 Score=92.00 Aligned_cols=177 Identities=14% Similarity=0.156 Sum_probs=128.7
Q ss_pred CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeE-eeeecCCCCH
Q psy14086 97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKK-LDKFQGSRTL 175 (324)
Q Consensus 97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~-~~~~~g~~~~ 175 (324)
++++-+.++...|..|..+...+++++..-. ++.+...+.. ...|++.+..+|+. -.+|.|-..-
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~---~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g 83 (517)
T PRK15317 18 ERPIELVASLDDSEKSAELKELLEEIASLSD---KITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMG 83 (517)
T ss_pred CCCEEEEEEeCCCchHHHHHHHHHHHHHhCC---ceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCcc
Confidence 3455344444489999999999999887643 5766442211 34799988876543 3679999899
Q ss_pred HHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecccccccc--ccCCcEEEEEeCCCChhhhhhhHhHHHHHHH
Q psy14086 176 ETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDV--IKSGTVFIKFFAPWCGHCKRLAPTWEELGTK 253 (324)
Q Consensus 176 ~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~--~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~ 253 (324)
.++..||...+.-. ..-..|+++..+.+ +....-+-.|++++|++|......+++++..
T Consensus 84 ~Ef~s~i~~i~~~~-------------------~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~ 144 (517)
T PRK15317 84 HEFTSLVLALLQVG-------------------GHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVL 144 (517)
T ss_pred HHHHHHHHHHHHhc-------------------CCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh
Confidence 99999999887632 12233333333322 2234468899999999999999999999843
Q ss_pred hhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHhh
Q psy14086 254 LLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316 (324)
Q Consensus 254 ~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~ 316 (324)
.+++..-.+|... .+++.++|++.++|++++ +|+. .+.|..+.+++.+.+.+.
T Consensus 145 ----~~~i~~~~id~~~--~~~~~~~~~v~~VP~~~i--~~~~--~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 145 ----NPNITHTMIDGAL--FQDEVEARNIMAVPTVFL--NGEE--FGQGRMTLEEILAKLDTG 197 (517)
T ss_pred ----CCCceEEEEEchh--CHhHHHhcCCcccCEEEE--CCcE--EEecCCCHHHHHHHHhcc
Confidence 2368899999988 999999999999999965 5543 477988888888888764
No 169
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.00 E-value=3e-09 Score=73.80 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=63.0
Q ss_pred ccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecC
Q psy14086 223 IKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNG 302 (324)
Q Consensus 223 ~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g 302 (324)
+.+..-+..|+++||++|....+.+++++.. +. ++.+..+|.+. .++++++|+|.++|++++ +|+.+ +.|
T Consensus 10 l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~-~~---~i~~~~vd~~~--~~e~a~~~~V~~vPt~vi--dG~~~--~~G 79 (89)
T cd03026 10 LNGPINFETYVSLSCHNCPDVVQALNLMAVL-NP---NIEHEMIDGAL--FQDEVEERGIMSVPAIFL--NGELF--GFG 79 (89)
T ss_pred cCCCEEEEEEECCCCCCcHHHHHHHHHHHHH-CC---CceEEEEEhHh--CHHHHHHcCCccCCEEEE--CCEEE--EeC
Confidence 3345578899999999999999999999944 32 58999999988 889999999999999964 77654 468
Q ss_pred CCCHHHHH
Q psy14086 303 SRDLEELY 310 (324)
Q Consensus 303 ~~~~~~l~ 310 (324)
..+.+++.
T Consensus 80 ~~~~~e~~ 87 (89)
T cd03026 80 RMTLEEIL 87 (89)
T ss_pred CCCHHHHh
Confidence 76666654
No 170
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.99 E-value=2e-09 Score=79.31 Aligned_cols=87 Identities=17% Similarity=0.260 Sum_probs=60.7
Q ss_pred CCcEEEEEeCCCChhhhhhhH-hHH--HHHHHhhcCCCCeEEEEEecCCccchhhhh--------hcCCCccceEEEE-e
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAP-TWE--ELGTKLLDNKHGIVIAKVDCTQELSKDLCN--------QEGVDGFPSIYVY-K 292 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~-~~~--~~a~~~~~~~~~~~~~~id~~~~~~~~~~~--------~~~i~~~P~l~~~-~ 292 (324)
+++++|.|++.||+.|+.+.+ .+. +++ +.+.. ++.++.+|.+. .+++.+ .+++.++|+++++ +
T Consensus 15 ~KpVll~f~a~WC~~Ck~me~~~f~~~~V~-~~l~~--~fv~VkvD~~~--~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~ 89 (124)
T cd02955 15 DKPIFLSIGYSTCHWCHVMEHESFEDEEVA-AILNE--NFVPIKVDREE--RPDVDKIYMNAAQAMTGQGGWPLNVFLTP 89 (124)
T ss_pred CCeEEEEEccCCCHhHHHHHHHccCCHHHH-HHHhC--CEEEEEEeCCc--CcHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 468999999999999999876 342 455 33333 58899999887 666654 3589999999999 4
Q ss_pred cCeeeee---ecCC--CCHHHHHHHHHhh
Q psy14086 293 NGVRTAE---YNGS--RDLEELYQFILKH 316 (324)
Q Consensus 293 ~g~~~~~---~~g~--~~~~~l~~fi~~~ 316 (324)
+|+.+.. +.+. .+...+.+++.+.
T Consensus 90 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 90 DLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred CCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 6776532 2222 3445666666543
No 171
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.98 E-value=1.8e-09 Score=70.99 Aligned_cols=56 Identities=21% Similarity=0.376 Sum_probs=49.1
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEE
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYV 290 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~ 290 (324)
++.|+++||++|+.+.+.+++++.. . .++.+..+|.++ ++++.+++++.++|++++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~-~---~~i~~~~id~~~--~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAAL-N---PNISAEMIDAAE--FPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHh-C---CceEEEEEEccc--CHhHHHHcCCcccCEEEE
Confidence 6789999999999999999999843 2 258999999988 788999999999999865
No 172
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.97 E-value=3.2e-09 Score=80.01 Aligned_cols=70 Identities=23% Similarity=0.488 Sum_probs=54.3
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC-CCeEEEEeccccc------------------------hhhhhhCC
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCTQH------------------------RSICQSFD 150 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~~~------------------------~~~~~~~~ 150 (324)
..++++|.||++||++|+...|.+++++++++.. .++.++.++.+.. ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 4567899999999999999999999999998753 2455554444322 35778899
Q ss_pred ccccceEEEEeC-CeE
Q psy14086 151 IKSYPTLLWIES-GKK 165 (324)
Q Consensus 151 i~~~P~~~~~~~-g~~ 165 (324)
+.++|++++++. |+.
T Consensus 97 v~~~P~~~lid~~G~i 112 (131)
T cd03009 97 IEGIPTLIILDADGEV 112 (131)
T ss_pred CCCCCEEEEECCCCCE
Confidence 999999999985 543
No 173
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.96 E-value=1.1e-08 Score=101.75 Aligned_cols=94 Identities=15% Similarity=0.319 Sum_probs=77.5
Q ss_pred HHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc---------------------------ccchhh
Q psy14086 93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC---------------------------TQHRSI 145 (324)
Q Consensus 93 ~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~---------------------------~~~~~~ 145 (324)
+....++++|.||++||++|+...|.|++++++|+++ .+.++.|.+ +....+
T Consensus 416 ~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~ 494 (1057)
T PLN02919 416 RDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYL 494 (1057)
T ss_pred hhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC-CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHH
Confidence 3345678899999999999999999999999999763 477776631 123457
Q ss_pred hhhCCccccceEEEEe-CCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086 146 CQSFDIKSYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKMKG 187 (324)
Q Consensus 146 ~~~~~i~~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~ 187 (324)
.+.|+|.++|++++++ +|+...++.|....+.+.+++...+.
T Consensus 495 ~~~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 495 WRELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred HHhcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 7889999999999995 58888889999999999999998865
No 174
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.96 E-value=3.1e-09 Score=80.13 Aligned_cols=68 Identities=21% Similarity=0.433 Sum_probs=53.3
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC-CCeEEEEeccccc-------------------------hhhhhhC
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCTQH-------------------------RSICQSF 149 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~~~-------------------------~~~~~~~ 149 (324)
.++.++|.||++||++|+...|.+++++++++++ .++.++.++.+.. ..+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 3567899999999999999999999999998763 2466665554432 2456679
Q ss_pred CccccceEEEEeCC
Q psy14086 150 DIKSYPTLLWIESG 163 (324)
Q Consensus 150 ~i~~~P~~~~~~~g 163 (324)
+|.++|++++++.+
T Consensus 96 ~v~~iPt~~lid~~ 109 (132)
T cd02964 96 KVEGIPTLVVLKPD 109 (132)
T ss_pred CCCCCCEEEEECCC
Confidence 99999999999753
No 175
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.95 E-value=1.1e-08 Score=79.80 Aligned_cols=85 Identities=18% Similarity=0.268 Sum_probs=65.3
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-----------cchhhhhhCCc--cccceEEEEeC-CeEe
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-----------QHRSICQSFDI--KSYPTLLWIES-GKKL 166 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-----------~~~~~~~~~~i--~~~P~~~~~~~-g~~~ 166 (324)
+|.||++||++|++..|.+++++++++- .+..+.+|-. ....+...|++ .++|+.++++. |+..
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~--~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGF--SVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCC--EEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 7889999999999999999999999842 3333344422 11236678885 69999999976 5553
Q ss_pred -eeecCCCCHHHHHHHHHhhhC
Q psy14086 167 -DKFQGSRTLETLVNYVSKMKG 187 (324)
Q Consensus 167 -~~~~g~~~~~~i~~fi~~~~~ 187 (324)
..+.|..+.+++.+.|...+.
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHHh
Confidence 468999999999999988876
No 176
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.94 E-value=5.1e-09 Score=78.44 Aligned_cols=79 Identities=19% Similarity=0.379 Sum_probs=60.5
Q ss_pred cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEec-----------------------CCccchhhhhhc
Q psy14086 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC-----------------------TQELSKDLCNQE 280 (324)
Q Consensus 224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~-----------------------~~~~~~~~~~~~ 280 (324)
.+++++|.||++||++|+...|.+++++++ + ++.++.++. +. ...+...|
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~-~----~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~--~~~~~~~~ 96 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQ-G----RVPIYGINYKDNPENALAWLARHGNPYAAVGFDP--DGRVGIDL 96 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHh-c----CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECC--cchHHHhc
Confidence 356899999999999999999999999854 2 244554442 22 45677889
Q ss_pred CCCccceEEEE-ecCeeeeeecCCCCHHHH
Q psy14086 281 GVDGFPSIYVY-KNGVRTAEYNGSRDLEEL 309 (324)
Q Consensus 281 ~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l 309 (324)
++.++|+.+++ ++|+.+..+.|..+.+.|
T Consensus 97 ~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 97 GVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 99999976666 688888889998876644
No 177
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.94 E-value=5.4e-09 Score=78.76 Aligned_cols=74 Identities=22% Similarity=0.440 Sum_probs=55.3
Q ss_pred cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc----------------------chhhhhhcC
Q psy14086 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL----------------------SKDLCNQEG 281 (324)
Q Consensus 224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~----------------------~~~~~~~~~ 281 (324)
.+++++|.||++||++|+...|.+.++.+++.....++.+..++.+... ...+.+.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 4578999999999999999999999998664433235666666655410 135677899
Q ss_pred CCccceEEEEe-cCeee
Q psy14086 282 VDGFPSIYVYK-NGVRT 297 (324)
Q Consensus 282 i~~~P~l~~~~-~g~~~ 297 (324)
+.++|+++++. +|+.+
T Consensus 97 v~~~P~~~lid~~G~i~ 113 (131)
T cd03009 97 IEGIPTLIILDADGEVV 113 (131)
T ss_pred CCCCCEEEEECCCCCEE
Confidence 99999999996 66544
No 178
>KOG0913|consensus
Probab=98.94 E-value=3.5e-10 Score=89.35 Aligned_cols=101 Identities=32% Similarity=0.605 Sum_probs=88.8
Q ss_pred CCeeEeccccccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceE
Q psy14086 209 EPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI 288 (324)
Q Consensus 209 ~~v~~l~~~~~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l 288 (324)
+.++.++.+++.+.. .+.+++.|++|||+.|+...|+|+..|.- ..+-.+.++.+|.+. ++.+.-+|-++..|+|
T Consensus 24 s~~~~~~eenw~~~l-~gewmi~~~ap~~psc~~~~~~~~~~a~~--s~dL~v~va~VDvt~--npgLsGRF~vtaLptI 98 (248)
T KOG0913|consen 24 SKLTRIDEENWKELL-TGEWMIEFGAPWCPSCSDLIPHLENFATV--SLDLGVKVAKVDVTT--NPGLSGRFLVTALPTI 98 (248)
T ss_pred ceeEEecccchhhhh-chHHHHHhcCCCCccccchHHHHhccCCc--cCCCceeEEEEEEEe--ccccceeeEEEecceE
Confidence 478889999988876 67899999999999999999999999843 233479999999999 9999999999999999
Q ss_pred EEEecCeeeeeecCCCCHHHHHHHHHh
Q psy14086 289 YVYKNGVRTAEYNGSRDLEELYQFILK 315 (324)
Q Consensus 289 ~~~~~g~~~~~~~g~~~~~~l~~fi~~ 315 (324)
+-.++|.-. +|.|.++.+++++|+..
T Consensus 99 YHvkDGeFr-rysgaRdk~dfisf~~~ 124 (248)
T KOG0913|consen 99 YHVKDGEFR-RYSGARDKNDFISFEEH 124 (248)
T ss_pred EEeeccccc-cccCcccchhHHHHHHh
Confidence 999998654 79999999999999974
No 179
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.93 E-value=1.2e-08 Score=74.81 Aligned_cols=91 Identities=12% Similarity=0.208 Sum_probs=73.4
Q ss_pred CCcEEEEEeCCCChhhhhhhH-hHH--HHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEe--cCeeeee
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAP-TWE--ELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK--NGVRTAE 299 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~-~~~--~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~--~g~~~~~ 299 (324)
+++++|+|+++||.+|+.+.. .|. ++. +++.. ++.+..+|.+..+...++..+++.++|+++++. +|+.+..
T Consensus 17 ~K~llv~~~~~~c~~c~~~~~~vl~~~~v~-~~l~~--~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 17 KKWLLVYLQSEDEFDSQVLNRDLWSNESVK-EFIRE--NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred CceEEEEEecCCcchHHHHHHHHcCCHHHH-HHHHh--CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEE
Confidence 468999999999999999865 452 344 44544 577888888765577889999999999999994 5788888
Q ss_pred ecCCCCHHHHHHHHHhhcc
Q psy14086 300 YNGSRDLEELYQFILKHKV 318 (324)
Q Consensus 300 ~~g~~~~~~l~~fi~~~~~ 318 (324)
..|..+.+++.+.|++...
T Consensus 94 ~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 94 WSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred EcCCCCHHHHHHHHHHHHh
Confidence 9999999999998887643
No 180
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.92 E-value=1.7e-08 Score=100.53 Aligned_cols=95 Identities=21% Similarity=0.349 Sum_probs=74.5
Q ss_pred cccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEec---CC----------------------ccchhh
Q psy14086 222 VIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC---TQ----------------------ELSKDL 276 (324)
Q Consensus 222 ~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~---~~----------------------~~~~~~ 276 (324)
...+++++|.||++||++|+...|.+++++++ +.. .++.++.+.. +. .....+
T Consensus 417 ~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~-y~~-~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~ 494 (1057)
T PLN02919 417 DLKGKVVILDFWTYCCINCMHVLPDLEFLEKK-YKD-QPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYL 494 (1057)
T ss_pred hcCCCEEEEEEECCcChhHHhHhHHHHHHHHH-cCC-CCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHH
Confidence 34577899999999999999999999999966 443 2466665532 11 013356
Q ss_pred hhhcCCCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086 277 CNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKV 318 (324)
Q Consensus 277 ~~~~~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~ 318 (324)
.+.|++.++|+++++ ++|+.+..+.|....+.|.++|.+.+.
T Consensus 495 ~~~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 495 WRELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred HHhcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 678999999999999 689888889999999999999987654
No 181
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.91 E-value=5.1e-09 Score=78.95 Aligned_cols=74 Identities=28% Similarity=0.430 Sum_probs=53.6
Q ss_pred cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc-----------------------chhhhhhc
Q psy14086 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL-----------------------SKDLCNQE 280 (324)
Q Consensus 224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~-----------------------~~~~~~~~ 280 (324)
.++.++|.||++||++|+...|.++++++++.....++.+..++.+... ...+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 3578999999999999999999999998664322134666666655410 12455679
Q ss_pred CCCccceEEEEe-cCeee
Q psy14086 281 GVDGFPSIYVYK-NGVRT 297 (324)
Q Consensus 281 ~i~~~P~l~~~~-~g~~~ 297 (324)
++.++|+++++. +|+.+
T Consensus 96 ~v~~iPt~~lid~~G~iv 113 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVV 113 (132)
T ss_pred CCCCCCEEEEECCCCCEE
Confidence 999999999996 45443
No 182
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.91 E-value=8.7e-09 Score=78.05 Aligned_cols=74 Identities=22% Similarity=0.342 Sum_probs=55.6
Q ss_pred cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcC-----CCCeEEEEEecCCcc-----------------------chh
Q psy14086 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDN-----KHGIVIAKVDCTQEL-----------------------SKD 275 (324)
Q Consensus 224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~-----~~~~~~~~id~~~~~-----------------------~~~ 275 (324)
.+++++|.|||+||++|+...|.+.++..++... ..++.++.|+.+... ...
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 4678999999999999999999999988654321 225777777766410 124
Q ss_pred hhhhcCCCccceEEEEe-cCeee
Q psy14086 276 LCNQEGVDGFPSIYVYK-NGVRT 297 (324)
Q Consensus 276 ~~~~~~i~~~P~l~~~~-~g~~~ 297 (324)
+.+.|++.++|+++++. +|+.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv 126 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVL 126 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEE
Confidence 66788999999999996 56554
No 183
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.91 E-value=1.5e-08 Score=75.48 Aligned_cols=97 Identities=21% Similarity=0.308 Sum_probs=66.9
Q ss_pred eeEeccccccccc-cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-------------------
Q psy14086 211 VVSLTSENFNDVI-KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ------------------- 270 (324)
Q Consensus 211 v~~l~~~~~~~~~-~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~------------------- 270 (324)
++.++++.+.... .+++++|.||++||++|+...|.+.+++.+ + .+..+.+|...
T Consensus 5 l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (123)
T cd03011 5 ATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-Y----PVVSVALRSGDDGAVARFMQKKGYGFPVIN 79 (123)
T ss_pred eecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-C----CEEEEEccCCCHHHHHHHHHHcCCCccEEE
Confidence 3344444433322 346899999999999999999999998854 2 22222222110
Q ss_pred ccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHH
Q psy14086 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQF 312 (324)
Q Consensus 271 ~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~f 312 (324)
..+..+++.|++.++|+++++..|+....+.|..+.+.|.+-
T Consensus 80 d~~~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 80 DPDGVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred CCCcHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 114578889999999999999765566678898888888653
No 184
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.89 E-value=1e-08 Score=72.51 Aligned_cols=68 Identities=25% Similarity=0.568 Sum_probs=51.8
Q ss_pred CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-----------------------cchhhhhhcC
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-----------------------LSKDLCNQEG 281 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-----------------------~~~~~~~~~~ 281 (324)
+++++|+||++||++|+...|.+.++.+++ ....++.++.++.+.. ....+.+.++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~-~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKY-KKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHH-TTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 357899999999999999999999999764 4244788888887761 1235778899
Q ss_pred CCccceEEEEec
Q psy14086 282 VDGFPSIYVYKN 293 (324)
Q Consensus 282 i~~~P~l~~~~~ 293 (324)
+.++|+++++..
T Consensus 80 i~~iP~~~lld~ 91 (95)
T PF13905_consen 80 INGIPTLVLLDP 91 (95)
T ss_dssp -TSSSEEEEEET
T ss_pred CCcCCEEEEECC
Confidence 999999999864
No 185
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.89 E-value=1.8e-08 Score=78.63 Aligned_cols=86 Identities=12% Similarity=0.189 Sum_probs=65.3
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-----------cchhhhhhcCC--CccceEEEE-ecC
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-----------LSKDLCNQEGV--DGFPSIYVY-KNG 294 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-----------~~~~~~~~~~i--~~~P~l~~~-~~g 294 (324)
+|.||++||++|++..|.++++++++ ++.+..++.+.. ....+.+.|++ .++|+.+++ ++|
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-----g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G 147 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-----GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNT 147 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-----CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCC
Confidence 77899999999999999999999663 245555554431 01235567884 699999999 577
Q ss_pred eee-eeecCCCCHHHHHHHHHhhccc
Q psy14086 295 VRT-AEYNGSRDLEELYQFILKHKVE 319 (324)
Q Consensus 295 ~~~-~~~~g~~~~~~l~~fi~~~~~~ 319 (324)
+.+ ..+.|..+.+++.+.|.+.++.
T Consensus 148 ~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 148 LEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred cEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 764 4789999999999999887653
No 186
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.87 E-value=2.9e-07 Score=85.58 Aligned_cols=177 Identities=16% Similarity=0.211 Sum_probs=128.2
Q ss_pred CCCE-EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCe-EeeeecCCCC
Q psy14086 97 LGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGK-KLDKFQGSRT 174 (324)
Q Consensus 97 ~~~~-~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~-~~~~~~g~~~ 174 (324)
++++ ++.|.. .|..|..+...+++++..-. ++.+...+.. ....|++.+..+|+ .-.+|.|-..
T Consensus 18 ~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~---ki~~~~~~~~----------~~~~p~~~~~~~~~~~~i~f~g~P~ 83 (515)
T TIGR03140 18 ENPVTLVLSAG-SHEKSKELLELLDEIASLSD---KISLTQNTAD----------TLRKPSFTILRDGADTGIRFAGIPG 83 (515)
T ss_pred CCCEEEEEEeC-CCchhHHHHHHHHHHHHhCC---CeEEEEecCC----------cCCCCeEEEecCCcccceEEEecCC
Confidence 3445 555555 78999999988888887642 5777543321 13569998887664 3367999988
Q ss_pred HHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccc--cCCcEEEEEeCCCChhhhhhhHhHHHHHH
Q psy14086 175 LETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGT 252 (324)
Q Consensus 175 ~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~--~~~~~~v~f~~~~c~~C~~~~~~~~~~a~ 252 (324)
-.++..||...+.-. ..-..|+++..+.+- ....-+-.|+++.|++|......+++++.
T Consensus 84 g~Ef~s~i~~i~~~~-------------------~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~ 144 (515)
T TIGR03140 84 GHEFTSLVLAILQVG-------------------GHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMAL 144 (515)
T ss_pred cHHHHHHHHHHHHhc-------------------CCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999999887632 222334444433322 23446889999999999999999999984
Q ss_pred HhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHhh
Q psy14086 253 KLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316 (324)
Q Consensus 253 ~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~ 316 (324)
. .+++..-.+|... .+++.++|++.++|++++ +|+. .+.|..+.+++.+.+.+.
T Consensus 145 ~----~p~i~~~~id~~~--~~~~~~~~~v~~VP~~~i--~~~~--~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 145 L----NPNISHTMIDGAL--FQDEVEALGIQGVPAVFL--NGEE--FHNGRMDLAELLEKLEET 198 (515)
T ss_pred h----CCCceEEEEEchh--CHHHHHhcCCcccCEEEE--CCcE--EEecCCCHHHHHHHHhhc
Confidence 3 2268888899888 999999999999999965 5543 467888888888777654
No 187
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.87 E-value=1.4e-08 Score=74.28 Aligned_cols=74 Identities=22% Similarity=0.570 Sum_probs=62.9
Q ss_pred CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc-----------------------hhhhhhCCccc
Q psy14086 97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH-----------------------RSICQSFDIKS 153 (324)
Q Consensus 97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~-----------------------~~~~~~~~i~~ 153 (324)
.+++++.||++||++|+...+.+.++..++.. .++.++.++++.. ..+.+.|++.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKD-DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCC-CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 55789999999999999999999999999962 3688999888775 78899999999
Q ss_pred cceEEEEeC-CeEeeeecC
Q psy14086 154 YPTLLWIES-GKKLDKFQG 171 (324)
Q Consensus 154 ~P~~~~~~~-g~~~~~~~g 171 (324)
+|+++++++ |+...++.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 999999975 666666654
No 188
>KOG0913|consensus
Probab=98.84 E-value=1.1e-09 Score=86.60 Aligned_cols=103 Identities=23% Similarity=0.542 Sum_probs=90.6
Q ss_pred CceEcChhhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEe
Q psy14086 82 GLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161 (324)
Q Consensus 82 ~~~~l~~~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~ 161 (324)
.+..++++++...+ .+.|++.|++|||+.|....++|...+.--.+ -.+.++.||.+.++.+.-+|-+...|+|+-..
T Consensus 25 ~~~~~~eenw~~~l-~gewmi~~~ap~~psc~~~~~~~~~~a~~s~d-L~v~va~VDvt~npgLsGRF~vtaLptIYHvk 102 (248)
T KOG0913|consen 25 KLTRIDEENWKELL-TGEWMIEFGAPWCPSCSDLIPHLENFATVSLD-LGVKVAKVDVTTNPGLSGRFLVTALPTIYHVK 102 (248)
T ss_pred eeEEecccchhhhh-chHHHHHhcCCCCccccchHHHHhccCCccCC-CceeEEEEEEEeccccceeeEEEecceEEEee
Confidence 67888999998776 56789999999999999999999999876655 47999999999999999999999999999998
Q ss_pred CCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086 162 SGKKLDKFQGSRTLETLVNYVSKMKG 187 (324)
Q Consensus 162 ~g~~~~~~~g~~~~~~i~~fi~~~~~ 187 (324)
+|.- .+|.|+++..+++.|+...--
T Consensus 103 DGeF-rrysgaRdk~dfisf~~~r~w 127 (248)
T KOG0913|consen 103 DGEF-RRYSGARDKNDFISFEEHREW 127 (248)
T ss_pred cccc-ccccCcccchhHHHHHHhhhh
Confidence 8854 579999999999999986543
No 189
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.83 E-value=6.8e-08 Score=70.77 Aligned_cols=90 Identities=18% Similarity=0.283 Sum_probs=73.4
Q ss_pred cCCCEEEEEeCCCCHhHhhHHH-HH--HHHHHhcCCCCCeEEEEeccc--cchhhhhhCCccccceEEEEeC--CeEeee
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAP-VW--QELASHFKTEEDVSIAKIDCT--QHRSICQSFDIKSYPTLLWIES--GKKLDK 168 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~-~~--~~la~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~P~~~~~~~--g~~~~~ 168 (324)
++++++|+|+++||.+|+.+.. .| .++.+.+.. ++.+..+|.+ +...++..|++.++|+++++.+ |+.+.+
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEE
Confidence 4557899999999999999865 34 355656654 6888888876 5668999999999999999975 777888
Q ss_pred ecCCCCHHHHHHHHHhhhC
Q psy14086 169 FQGSRTLETLVNYVSKMKG 187 (324)
Q Consensus 169 ~~g~~~~~~i~~fi~~~~~ 187 (324)
..|..+++++...+++...
T Consensus 94 ~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 94 WSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred EcCCCCHHHHHHHHHHHHh
Confidence 9999999999999887654
No 190
>KOG0914|consensus
Probab=98.82 E-value=6.3e-09 Score=81.15 Aligned_cols=93 Identities=22% Similarity=0.417 Sum_probs=76.4
Q ss_pred CCCCCCCCCeeEe-ccccccccccCC---cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhh
Q psy14086 202 SEVPVKPEPVVSL-TSENFNDVIKSG---TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLC 277 (324)
Q Consensus 202 ~~~~~~~~~v~~l-~~~~~~~~~~~~---~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~ 277 (324)
+|....+..++.+ +++.+++....+ .|+|.|++-|.+.|+.+.|.+-+++.++... .+.|+++|+.. .++..
T Consensus 117 eP~y~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~--~lkFGkvDiGr--fpd~a 192 (265)
T KOG0914|consen 117 EPAYSGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN--LLKFGKVDIGR--FPDVA 192 (265)
T ss_pred ccccCCchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCC--CCcccceeecc--CcChH
Confidence 4445566788888 455566655432 4999999999999999999999999775444 79999999999 99999
Q ss_pred hhcCCC------ccceEEEEecCeeee
Q psy14086 278 NQEGVD------GFPSIYVYKNGVRTA 298 (324)
Q Consensus 278 ~~~~i~------~~P~l~~~~~g~~~~ 298 (324)
++|+|+ .+||+++|.+|+++.
T Consensus 193 ~kfris~s~~srQLPT~ilFq~gkE~~ 219 (265)
T KOG0914|consen 193 AKFRISLSPGSRQLPTYILFQKGKEVS 219 (265)
T ss_pred HheeeccCcccccCCeEEEEccchhhh
Confidence 999986 689999999998754
No 191
>KOG0914|consensus
Probab=98.82 E-value=7.6e-09 Score=80.71 Aligned_cols=90 Identities=19% Similarity=0.440 Sum_probs=74.9
Q ss_pred CCCCCceEc-ChhhHHHHhcCC---CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCcc-
Q psy14086 78 IVNEGLVEL-TEESFEKYVSLG---NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIK- 152 (324)
Q Consensus 78 ~~~~~~~~l-~~~~f~~~~~~~---~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~- 152 (324)
..+..+..+ +.+.++..+.++ .|+|.||+.|.+.|..+.|.+.+++.+|... .++|++||....++.+++|+|.
T Consensus 121 ~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~-~lkFGkvDiGrfpd~a~kfris~ 199 (265)
T KOG0914|consen 121 SGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN-LLKFGKVDIGRFPDVAAKFRISL 199 (265)
T ss_pred CCchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCC-CCcccceeeccCcChHHheeecc
Confidence 345567777 555666665333 4899999999999999999999999999763 7999999999999999999986
Q ss_pred -----ccceEEEEeCCeEeee
Q psy14086 153 -----SYPTLLWIESGKKLDK 168 (324)
Q Consensus 153 -----~~P~~~~~~~g~~~~~ 168 (324)
+.||+++|++|+...+
T Consensus 200 s~~srQLPT~ilFq~gkE~~R 220 (265)
T KOG0914|consen 200 SPGSRQLPTYILFQKGKEVSR 220 (265)
T ss_pred CcccccCCeEEEEccchhhhc
Confidence 5899999999976543
No 192
>KOG0911|consensus
Probab=98.81 E-value=1.7e-08 Score=79.66 Aligned_cols=180 Identities=16% Similarity=0.288 Sum_probs=116.7
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCH
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTL 175 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~ 175 (324)
.....++.||++||.+|+++...+..+++.+. ++.|++.+.+..+.++..+.+...|.++++..|+.+.+..|....
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~---~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~ 92 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK---NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPP 92 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh---hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcH
Confidence 34456899999999999999999999999983 699999999999999999999999999999888888777776544
Q ss_pred HHHHHHHHhhhCCC--CCCCCCCccccCCCCCCCCCCeeEeccccccccccCCcEEEEEe----CCCChhhhhhhHhHHH
Q psy14086 176 ETLVNYVSKMKGPL--NKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFF----APWCGHCKRLAPTWEE 249 (324)
Q Consensus 176 ~~i~~fi~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~v~f~----~~~c~~C~~~~~~~~~ 249 (324)
.....+-.-..... .......+... .. .+... . ..+.+++.++.++++++.- .|.||..+++..+++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~--~~~~~--~-~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~ 166 (227)
T KOG0911|consen 93 FLVSKVEKLAESGSASLGMGLSTTIRE-TQ--TTNET--D-LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQS 166 (227)
T ss_pred HHHHHHHHhhhhcccccCCCCCcchhc-cc--ccchh--h-HHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHH
Confidence 33333221111110 00000000000 00 00000 1 2234555666667776553 2668887777666655
Q ss_pred HHHHhhcCCCCeEEEEEecCCccchhhhhhcC-CCccceE-EEEecCe
Q psy14086 250 LGTKLLDNKHGIVIAKVDCTQELSKDLCNQEG-VDGFPSI-YVYKNGV 295 (324)
Q Consensus 250 ~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~-i~~~P~l-~~~~~g~ 295 (324)
. ++.|...|+-+ +++++...+ .+..||+ -+|-+|+
T Consensus 167 ~---------nV~~~~fdIL~--DeelRqglK~fSdWPTfPQlyI~GE 203 (227)
T KOG0911|consen 167 H---------NVNYTIFDVLT--DEELRQGLKEFSDWPTFPQLYVKGE 203 (227)
T ss_pred c---------CCCeeEEeccC--CHHHHHHhhhhcCCCCccceeECCE
Confidence 4 35688889888 787765544 3467776 4566663
No 193
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.80 E-value=3.2e-08 Score=72.31 Aligned_cols=74 Identities=26% Similarity=0.614 Sum_probs=60.8
Q ss_pred CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccc-----------------------hhhhhhcC
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS-----------------------KDLCNQEG 281 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~-----------------------~~~~~~~~ 281 (324)
+++++|.||++||+.|+...+.+.++..+ +. ..++.++.++.+. . ..+.+.|+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~-~~-~~~~~~~~v~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKE-YK-DDGVEVVGVNVDD--DDPAAVKAFLKKYGITFPVLLDPDGELAKAYG 94 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHH-hC-CCCeEEEEEECCC--CCHHHHHHHHHHcCCCcceEEcCcchHHHhcC
Confidence 56899999999999999999999999865 43 2368888888876 3 67788999
Q ss_pred CCccceEEEEe-cCeeeeeecC
Q psy14086 282 VDGFPSIYVYK-NGVRTAEYNG 302 (324)
Q Consensus 282 i~~~P~l~~~~-~g~~~~~~~g 302 (324)
+.++|+++++. +|+.+..+.|
T Consensus 95 ~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 95 VRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cCccceEEEECCCCcEEEEecC
Confidence 99999999995 6777666665
No 194
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.78 E-value=1.8e-07 Score=87.06 Aligned_cols=137 Identities=18% Similarity=0.259 Sum_probs=107.6
Q ss_pred cCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceEcChhhHHHHh--cCCCEEEEEeCCC
Q psy14086 31 GYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELTEESFEKYV--SLGNHFVKFYAPW 108 (324)
Q Consensus 31 ~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~--~~~~~~v~f~~~~ 108 (324)
..|++.+..++. ...++|.|....+++.+|+.....- ...-..|+++..+.+. .+...+..|++++
T Consensus 60 ~~p~~~~~~~~~-~~~i~f~g~P~g~Ef~s~i~~i~~~-----------~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~ 127 (517)
T PRK15317 60 RKPSFSITRPGE-DTGVRFAGIPMGHEFTSLVLALLQV-----------GGHPPKLDQEVIEQIKALDGDFHFETYVSLS 127 (517)
T ss_pred CCCEEEEEcCCc-cceEEEEecCccHHHHHHHHHHHHh-----------cCCCCCCCHHHHHHHHhcCCCeEEEEEEcCC
Confidence 369999998554 5578999999999999998876532 1134556666655444 3334589999999
Q ss_pred CHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086 109 CGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK 186 (324)
Q Consensus 109 c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~ 186 (324)
|++|......+++++.... ++.+-.+|...+++++++|++.++|++++ +++. .+.|..+.++|.+.+....
T Consensus 128 Cp~Cp~~v~~~~~~a~~~~---~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~--~~~g~~~~~~~~~~~~~~~ 198 (517)
T PRK15317 128 CHNCPDVVQALNLMAVLNP---NITHTMIDGALFQDEVEARNIMAVPTVFL--NGEE--FGQGRMTLEEILAKLDTGA 198 (517)
T ss_pred CCCcHHHHHHHHHHHHhCC---CceEEEEEchhCHhHHHhcCCcccCEEEE--CCcE--EEecCCCHHHHHHHHhccc
Confidence 9999999999999998754 69999999999999999999999999976 4543 3789999888888887643
No 195
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.78 E-value=8.6e-08 Score=69.51 Aligned_cols=102 Identities=18% Similarity=0.139 Sum_probs=80.8
Q ss_pred ceEcChhhHHHHhcCC-CEEEEEeCCCCHhHhhHHHHHHHHHHh---cCCCCCeEEEEeccccchhhhhhCCccc--cce
Q psy14086 83 LVELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASH---FKTEEDVSIAKIDCTQHRSICQSFDIKS--YPT 156 (324)
Q Consensus 83 ~~~l~~~~f~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~---~~~~~~i~~~~vd~~~~~~~~~~~~i~~--~P~ 156 (324)
|+++|.++...+...+ +..++|+ .-..-..+...++.+|++ +++ ++.|+.+|.+....+++.||++. .|.
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kg--ki~Fv~~d~~~~~~~~~~fgl~~~~~P~ 76 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKG--AINFLTADGDKFRHPLLHLGKTPADLPV 76 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCc--eEEEEEEechHhhhHHHHcCCCHhHCCE
Confidence 4678889998887665 4445566 333347788999999999 998 89999999998888999999996 899
Q ss_pred EEEEeCCe-Eeee-ecCCCCHHHHHHHHHhhhCC
Q psy14086 157 LLWIESGK-KLDK-FQGSRTLETLVNYVSKMKGP 188 (324)
Q Consensus 157 ~~~~~~g~-~~~~-~~g~~~~~~i~~fi~~~~~~ 188 (324)
+++..... .... +.+..+.++|.+|+++++.|
T Consensus 77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~G 110 (111)
T cd03072 77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSG 110 (111)
T ss_pred EEEEcchhcCcCCCCccccCHHHHHHHHHHHhcC
Confidence 88887632 1222 45789999999999999876
No 196
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.77 E-value=6.3e-08 Score=72.36 Aligned_cols=76 Identities=14% Similarity=0.352 Sum_probs=59.2
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---------------------------cchhhhhh
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---------------------------QHRSICQS 148 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---------------------------~~~~~~~~ 148 (324)
..++++|.||++||++|....|.+++++++++.. .+.++.|+.. ....+.+.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~-~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~ 100 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD-GLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA 100 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC-CeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence 4567899999999999999999999999999852 5777777541 11346667
Q ss_pred CCccccceEEEEeC-CeEeeeecCC
Q psy14086 149 FDIKSYPTLLWIES-GKKLDKFQGS 172 (324)
Q Consensus 149 ~~i~~~P~~~~~~~-g~~~~~~~g~ 172 (324)
|++..+|+.+++++ |+...++.|+
T Consensus 101 ~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred hCCCcCCeEEEECCCCcEEEEEecC
Confidence 89999999999965 7666666654
No 197
>smart00594 UAS UAS domain.
Probab=98.76 E-value=8.3e-08 Score=71.10 Aligned_cols=86 Identities=14% Similarity=0.231 Sum_probs=66.7
Q ss_pred CCcEEEEEeCCCChhhhhhhHh-H--HHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEe-cC-e----
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPT-W--EELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK-NG-V---- 295 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~-~--~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~-~g-~---- 295 (324)
.+.++|+|+++||.+|..+... | .++. ++.+. ++.+..+|.+..+...++..++++++|+++++. .| .
T Consensus 27 ~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~-~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~ 103 (122)
T smart00594 27 RRLLWLYLHSQDSPDSQVFNRDVLCNEAVK-SLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIE 103 (122)
T ss_pred cCCEEEEEeCCCCchHHHHHHHHccCHHHH-HHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEE
Confidence 3589999999999999997553 4 2344 44544 678878888876677889999999999999994 44 2
Q ss_pred eeeeecCCCCHHHHHHHH
Q psy14086 296 RTAEYNGSRDLEELYQFI 313 (324)
Q Consensus 296 ~~~~~~g~~~~~~l~~fi 313 (324)
......|..+.++|.++|
T Consensus 104 ~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 104 WVGVVEGEISPEELMTFL 121 (122)
T ss_pred EeccccCCCCHHHHHHhh
Confidence 245678999999998876
No 198
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.73 E-value=8.6e-08 Score=70.63 Aligned_cols=94 Identities=19% Similarity=0.285 Sum_probs=58.8
Q ss_pred CCcEEEEEeCCCChhhhhhhHhH---HHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEE-ecCeeeeee
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPTW---EELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVY-KNGVRTAEY 300 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~~---~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~-~~g~~~~~~ 300 (324)
+++++|+|++.||++|+.+...+ .++. ++... ++..+.++.+.. .... ...+ .++|+++|+ ++|+.+...
T Consensus 23 ~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~-~~l~~--~Fv~V~l~~d~t-d~~~-~~~g-~~vPtivFld~~g~vi~~i 96 (130)
T cd02960 23 NKPLMVIHHLEDCPHSQALKKAFAEHKEIQ-KLAQE--DFIMLNLVHETT-DKNL-SPDG-QYVPRIMFVDPSLTVRADI 96 (130)
T ss_pred CCeEEEEEeCCcCHhHHHHHHHhhCCHHHH-HHHHh--CeEEEEEEeccC-CCCc-CccC-cccCeEEEECCCCCCcccc
Confidence 46899999999999999987754 2344 33333 455556665431 1111 1233 589999999 466554333
Q ss_pred cC----------CCCHHHHHHHHHhhcccCCCCC
Q psy14086 301 NG----------SRDLEELYQFILKHKVESHDEL 324 (324)
Q Consensus 301 ~g----------~~~~~~l~~fi~~~~~~~~~el 324 (324)
.| +.+.+.|.+=+++...-.+.||
T Consensus 97 ~Gy~~~~~~~y~~~~~~~~~~~m~~a~~~~~~~~ 130 (130)
T cd02960 97 TGRYSNRLYTYEPADIPLLIENMKKALKLLKTEL 130 (130)
T ss_pred cccccCccceeCcCcHHHHHHHHHHHHHHHhccC
Confidence 33 3455677777777666566665
No 199
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.72 E-value=1.4e-07 Score=77.51 Aligned_cols=91 Identities=16% Similarity=0.234 Sum_probs=69.0
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-----------chhhh-hhCCc------------
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-----------HRSIC-QSFDI------------ 151 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-----------~~~~~-~~~~i------------ 151 (324)
..++++|.||++||++|....|.+++++++++++ .+.++.|+++. ...++ +++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~-Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G 176 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG 176 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC-CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence 3567899999999999999999999999999863 47888777631 12222 22221
Q ss_pred ----------------------cccceEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086 152 ----------------------KSYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKMKG 187 (324)
Q Consensus 152 ----------------------~~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~ 187 (324)
...|+.++++. |+.+.+|.|..+.++|.+.|++++.
T Consensus 177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 22477777765 8888899999999999999988764
No 200
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.71 E-value=1.5e-07 Score=72.24 Aligned_cols=81 Identities=27% Similarity=0.557 Sum_probs=61.6
Q ss_pred ccCCcEEEEEeCC-CChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-------------------ccchhhhhhcCC
Q psy14086 223 IKSGTVFIKFFAP-WCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-------------------ELSKDLCNQEGV 282 (324)
Q Consensus 223 ~~~~~~~v~f~~~-~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-------------------~~~~~~~~~~~i 282 (324)
..+++++|.||+. ||++|+...|.+.++.+.+... ++.++.+..+. +....+.+.+++
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~--~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 103 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK--GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGV 103 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTC
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC--ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCC
Confidence 4567899999999 9999999999999998654444 46666666544 123467788998
Q ss_pred C---------ccceEEEE-ecCeeeeeecCCCC
Q psy14086 283 D---------GFPSIYVY-KNGVRTAEYNGSRD 305 (324)
Q Consensus 283 ~---------~~P~l~~~-~~g~~~~~~~g~~~ 305 (324)
. ++|+++++ ++|+.+....|..+
T Consensus 104 ~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 104 TIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp EEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred ccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 8 99999887 57777777777644
No 201
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.70 E-value=9.8e-08 Score=71.33 Aligned_cols=78 Identities=21% Similarity=0.390 Sum_probs=58.5
Q ss_pred cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC-----C--------------------ccchhhhh
Q psy14086 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT-----Q--------------------ELSKDLCN 278 (324)
Q Consensus 224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~-----~--------------------~~~~~~~~ 278 (324)
.+++++|.||+.||++|....|.++++.+++... ++.++.++.+ . +....+.+
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~--~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~ 99 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD--GLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWR 99 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC--CeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHH
Confidence 4678999999999999999999999999664332 5777766542 1 01234567
Q ss_pred hcCCCccceEEEE-ecCeeeeeecCC
Q psy14086 279 QEGVDGFPSIYVY-KNGVRTAEYNGS 303 (324)
Q Consensus 279 ~~~i~~~P~l~~~-~~g~~~~~~~g~ 303 (324)
.|++.++|+.+++ ++|+.+..+.|+
T Consensus 100 ~~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 100 AYGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred HhCCCcCCeEEEECCCCcEEEEEecC
Confidence 7899999999999 478777677664
No 202
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.69 E-value=5.4e-07 Score=83.81 Aligned_cols=137 Identities=15% Similarity=0.289 Sum_probs=107.3
Q ss_pred cCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceEcChhhHHHHh--cCCCEEEEEeCCC
Q psy14086 31 GYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELTEESFEKYV--SLGNHFVKFYAPW 108 (324)
Q Consensus 31 ~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~--~~~~~~v~f~~~~ 108 (324)
..|++.++.++. ...++|.|....+++.+|+...... ...-..|+++..+.+. .+...+..|.++.
T Consensus 61 ~~p~~~~~~~~~-~~~i~f~g~P~g~Ef~s~i~~i~~~-----------~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~ 128 (515)
T TIGR03140 61 RKPSFTILRDGA-DTGIRFAGIPGGHEFTSLVLAILQV-----------GGHGPKLDEGIIDRIRRLNGPLHFETYVSLT 128 (515)
T ss_pred CCCeEEEecCCc-ccceEEEecCCcHHHHHHHHHHHHh-----------cCCCCCCCHHHHHHHHhcCCCeEEEEEEeCC
Confidence 359999987554 4578999999999999998876542 1134556666655544 3334588999999
Q ss_pred CHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086 109 CGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK 186 (324)
Q Consensus 109 c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~ 186 (324)
|++|......+++++.... ++..-.+|...+++++++|++.++|++++ +++. .+.|..+.+++.+.+....
T Consensus 129 Cp~Cp~~v~~~~~~a~~~p---~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~--~~~g~~~~~~~~~~l~~~~ 199 (515)
T TIGR03140 129 CQNCPDVVQALNQMALLNP---NISHTMIDGALFQDEVEALGIQGVPAVFL--NGEE--FHNGRMDLAELLEKLEETA 199 (515)
T ss_pred CCCCHHHHHHHHHHHHhCC---CceEEEEEchhCHHHHHhcCCcccCEEEE--CCcE--EEecCCCHHHHHHHHhhcc
Confidence 9999999999999998865 58899999999999999999999999976 4443 3789889888877776653
No 203
>smart00594 UAS UAS domain.
Probab=98.66 E-value=4e-07 Score=67.43 Aligned_cols=85 Identities=11% Similarity=0.212 Sum_probs=65.9
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHH-H--HHHHHhcCCCCCeEEEEeccc--cchhhhhhCCccccceEEEEeC-C-e----
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPV-W--QELASHFKTEEDVSIAKIDCT--QHRSICQSFDIKSYPTLLWIES-G-K---- 164 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~-~--~~la~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~P~~~~~~~-g-~---- 164 (324)
+.+.++|+|+++||.+|..+... | .++.+.+.. ++.+..+|.+ +...+++.|+++++|+++++.+ | .
T Consensus 26 ~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~ 103 (122)
T smart00594 26 QRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIE 103 (122)
T ss_pred hcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEE
Confidence 34578999999999999988763 2 345555544 6888778865 5568999999999999999976 3 1
Q ss_pred EeeeecCCCCHHHHHHHH
Q psy14086 165 KLDKFQGSRTLETLVNYV 182 (324)
Q Consensus 165 ~~~~~~g~~~~~~i~~fi 182 (324)
...+..|..+++++..++
T Consensus 104 ~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 104 WVGVVEGEISPEELMTFL 121 (122)
T ss_pred EeccccCCCCHHHHHHhh
Confidence 345678999999998876
No 204
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.66 E-value=1.8e-07 Score=68.53 Aligned_cols=66 Identities=17% Similarity=0.295 Sum_probs=43.9
Q ss_pred cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEE-ecCCccc-----------------hhhhhhcCCCcc
Q psy14086 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV-DCTQELS-----------------KDLCNQEGVDGF 285 (324)
Q Consensus 224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~i-d~~~~~~-----------------~~~~~~~~i~~~ 285 (324)
++++++|.||++||++|+...|.+++++.+ +.. ++.++.+ +.+.... .++.+.|++.++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~-~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 96 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARA-EAD--WLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKL 96 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHH-hcC--CcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCc
Confidence 367899999999999999999999998855 433 3444444 2111001 234455666677
Q ss_pred ceEEEEe
Q psy14086 286 PSIYVYK 292 (324)
Q Consensus 286 P~l~~~~ 292 (324)
|+.+++.
T Consensus 97 P~~~vid 103 (114)
T cd02967 97 PYAVLLD 103 (114)
T ss_pred CeEEEEC
Confidence 7777664
No 205
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.66 E-value=3.2e-07 Score=66.43 Aligned_cols=98 Identities=11% Similarity=0.133 Sum_probs=73.9
Q ss_pred EcChhhHHHHhcCCCEEEEEe----CCCCHhHhhHHHHHHHHHHhcC-CCCCeEEEEeccccchhhhhhCCccc----cc
Q psy14086 85 ELTEESFEKYVSLGNHFVKFY----APWCGHCQSLAPVWQELASHFK-TEEDVSIAKIDCTQHRSICQSFDIKS----YP 155 (324)
Q Consensus 85 ~l~~~~f~~~~~~~~~~v~f~----~~~c~~c~~~~~~~~~la~~~~-~~~~i~~~~vd~~~~~~~~~~~~i~~----~P 155 (324)
.+|.++.......+ .++.|+ +..-..-..+...+.++|+.++ + ++.|+.+|.+.+..+++.||++. .|
T Consensus 3 ~~~~en~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g--ki~Fv~~D~~~~~~~l~~fgl~~~~~~~P 79 (111)
T cd03073 3 HRTKDNRAQFTKKP-LVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR--KLNFAVADKEDFSHELEEFGLDFSGGEKP 79 (111)
T ss_pred eeccchHHHhccCC-eEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC--eEEEEEEcHHHHHHHHHHcCCCcccCCCC
Confidence 46677777775443 344333 3344556778999999999999 7 79999999998888999999984 89
Q ss_pred eEEEEeCCeEeeeecCCC-CHHHHHHHHHhh
Q psy14086 156 TLLWIESGKKLDKFQGSR-TLETLVNYVSKM 185 (324)
Q Consensus 156 ~~~~~~~g~~~~~~~g~~-~~~~i~~fi~~~ 185 (324)
+++++..........+.. +.++|.+|++++
T Consensus 80 ~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 80 VVAIRTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred EEEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 999987533222246678 999999999876
No 206
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.65 E-value=6.5e-08 Score=70.92 Aligned_cols=58 Identities=17% Similarity=0.373 Sum_probs=42.1
Q ss_pred CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEe---ccccchhhhhhCCccccce
Q psy14086 97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI---DCTQHRSICQSFDIKSYPT 156 (324)
Q Consensus 97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~v---d~~~~~~~~~~~~i~~~P~ 156 (324)
.++++|.||++||++|+...|.++++++.+.+ ++.++.+ +.+....+++++++..+|.
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~p~ 81 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLASDGEKAEHQRFLKKHGLEAFPY 81 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEEeCCCHHHHHHHHHHhCCCCCcE
Confidence 56789999999999999999999999988865 4555544 2223344556666655554
No 207
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.63 E-value=8.6e-07 Score=66.16 Aligned_cols=107 Identities=18% Similarity=0.330 Sum_probs=80.9
Q ss_pred CceEcChhhH-HHHhcCCCE-EEEEeCC--CCHh-H-hhHHHHHHHHHHhcCCCCC-eEEEEeccccchhhhhhCCcc--
Q psy14086 82 GLVELTEESF-EKYVSLGNH-FVKFYAP--WCGH-C-QSLAPVWQELASHFKTEED-VSIAKIDCTQHRSICQSFDIK-- 152 (324)
Q Consensus 82 ~~~~l~~~~f-~~~~~~~~~-~v~f~~~--~c~~-c-~~~~~~~~~la~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~-- 152 (324)
.+.+|+.+++ +..-..+.+ +|.|... .|.. + ..+...+.++|++|++ + +.|+.+|.+....+.+.|||.
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kg--k~i~Fv~vd~~~~~~~~~~fgl~~~ 80 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKK--KPWGWLWTEAGAQLDLEEALNIGGF 80 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcC--CcEEEEEEeCcccHHHHHHcCCCcc
Confidence 4677776655 444434444 5555432 1222 2 5678899999999998 7 999999999998899999996
Q ss_pred ccceEEEEeCCe-EeeeecCCCCHHHHHHHHHhhhCCCC
Q psy14086 153 SYPTLLWIESGK-KLDKFQGSRTLETLVNYVSKMKGPLN 190 (324)
Q Consensus 153 ~~P~~~~~~~g~-~~~~~~g~~~~~~i~~fi~~~~~~~~ 190 (324)
.+|+++++...+ .+..+.|.++.++|.+|+++++.|+.
T Consensus 81 ~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 81 GYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 499999998744 33336799999999999999999874
No 208
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.61 E-value=3.3e-07 Score=73.95 Aligned_cols=92 Identities=16% Similarity=0.172 Sum_probs=68.8
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-----------cchhhhhhCCcc------------
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-----------QHRSICQSFDIK------------ 152 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-----------~~~~~~~~~~i~------------ 152 (324)
..++++|.||++||++|...+|.+.+++++++++ .+.++.|+++ +-..+++++++.
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~-g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~ 116 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL-GLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGE 116 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC-ceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCC
Confidence 3567899999999999999999999999999763 5888888753 123445554431
Q ss_pred ------------------------ccc---eEEEEe-CCeEeeeecCCCCHHHHHHHHHhhhCC
Q psy14086 153 ------------------------SYP---TLLWIE-SGKKLDKFQGSRTLETLVNYVSKMKGP 188 (324)
Q Consensus 153 ------------------------~~P---~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~~ 188 (324)
.+| +.++++ +|+.+.++.|..+.+.+.+.|...+..
T Consensus 117 ~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 117 NTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred ccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 112 355554 477778888989999999999988873
No 209
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.61 E-value=4e-07 Score=69.88 Aligned_cols=79 Identities=22% Similarity=0.508 Sum_probs=60.6
Q ss_pred hcCCCEEEEEeCC-CCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc---------------------hhhhhhCCcc
Q psy14086 95 VSLGNHFVKFYAP-WCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH---------------------RSICQSFDIK 152 (324)
Q Consensus 95 ~~~~~~~v~f~~~-~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~---------------------~~~~~~~~i~ 152 (324)
...++++|.||++ ||++|...+|.+.++++.++.+ .+.++.|..+.+ ..+.+.|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 104 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK-GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVT 104 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC-ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCc
Confidence 3466789999999 9999999999999999987653 466665554322 4688889988
Q ss_pred ---------ccceEEEEeC-CeEeeeecCCCC
Q psy14086 153 ---------SYPTLLWIES-GKKLDKFQGSRT 174 (324)
Q Consensus 153 ---------~~P~~~~~~~-g~~~~~~~g~~~ 174 (324)
.+|++++++. |+....+.|...
T Consensus 105 ~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 105 IMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp EECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred cccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 9999988876 666666667654
No 210
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.60 E-value=5.7e-07 Score=72.08 Aligned_cols=90 Identities=21% Similarity=0.301 Sum_probs=63.5
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc------------------ccchhhhhhCCccccceE
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC------------------TQHRSICQSFDIKSYPTL 157 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~------------------~~~~~~~~~~~i~~~P~~ 157 (324)
..+++++.||++||++|+...|.+.++.+.... ++.++..|. .....+.+.|++..+|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~--~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEET--DVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCC--cEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 455789999999999999999999999876533 455554221 013467788999999999
Q ss_pred EEEeCCeEeeeecCC-CCHHHHHHHHHhhhCC
Q psy14086 158 LWIESGKKLDKFQGS-RTLETLVNYVSKMKGP 188 (324)
Q Consensus 158 ~~~~~g~~~~~~~g~-~~~~~i~~fi~~~~~~ 188 (324)
+++++...+. +.|. .+.+.+.+.++..-.+
T Consensus 151 ~lID~~G~I~-~~g~~~~~~~le~ll~~l~~~ 181 (189)
T TIGR02661 151 VLLDQDGKIR-AKGLTNTREHLESLLEADREG 181 (189)
T ss_pred EEECCCCeEE-EccCCCCHHHHHHHHHHHHcC
Confidence 8887643332 4554 4667788888765443
No 211
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.60 E-value=3.2e-07 Score=72.10 Aligned_cols=81 Identities=10% Similarity=0.097 Sum_probs=61.0
Q ss_pred CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEE------EEeccc-----------------------------c
Q psy14086 97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSI------AKIDCT-----------------------------Q 141 (324)
Q Consensus 97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~------~~vd~~-----------------------------~ 141 (324)
.+.++|.|||.||++|+..+|.+.+++.+ ++.+ ..||.+ .
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~-----~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA-----KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc-----CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 55689999999999999999999999754 2333 333332 2
Q ss_pred chhhhhhCCccccceE-EEEeC-CeEeeeecCCCCHHHHHHHH
Q psy14086 142 HRSICQSFDIKSYPTL-LWIES-GKKLDKFQGSRTLETLVNYV 182 (324)
Q Consensus 142 ~~~~~~~~~i~~~P~~-~~~~~-g~~~~~~~g~~~~~~i~~fi 182 (324)
...+...||+.+.|+. ++++. |+...++.|..+.+++.+.+
T Consensus 134 ~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 134 KGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred cchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 2346668899999877 67765 88888899999999887743
No 212
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.59 E-value=6e-07 Score=73.76 Aligned_cols=93 Identities=19% Similarity=0.156 Sum_probs=66.6
Q ss_pred cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC------c---cchhhh-hhcCC-----------
Q psy14086 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ------E---LSKDLC-NQEGV----------- 282 (324)
Q Consensus 224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~------~---~~~~~~-~~~~i----------- 282 (324)
.+++++|.||++||++|....|.++++.+++... ++.++-++++. . +..++. +++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~--Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~ 175 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVN 175 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC--CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCC
Confidence 4578999999999999999999999999764333 57777777531 0 011221 12221
Q ss_pred -----------------------CccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086 283 -----------------------DGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKV 318 (324)
Q Consensus 283 -----------------------~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~ 318 (324)
...|+.+++ ++|+.+..|.|..+.++|...|++.++
T Consensus 176 G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 176 GPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred cchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 124677777 678888899999999999999988764
No 213
>PLN02412 probable glutathione peroxidase
Probab=98.55 E-value=4.4e-07 Score=71.19 Aligned_cols=91 Identities=18% Similarity=0.289 Sum_probs=67.8
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc--------cchh----hhhhCC-------------
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT--------QHRS----ICQSFD------------- 150 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~--------~~~~----~~~~~~------------- 150 (324)
..+.++|.||++||++|+...|.++++.++|++. .+.++.|+++ .... ++++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG 106 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-CcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence 3467899999999999999999999999999863 5888888753 1111 122222
Q ss_pred ---------------------ccccceEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086 151 ---------------------IKSYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKMKG 187 (324)
Q Consensus 151 ---------------------i~~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~ 187 (324)
+...|+.++++. |+...++.|..+.+++...|+..+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 223467677744 7778888999999999999988775
No 214
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.54 E-value=7.5e-07 Score=71.86 Aligned_cols=94 Identities=17% Similarity=0.178 Sum_probs=65.9
Q ss_pred cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---------ccchhhhhhcCCC-----------
Q psy14086 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---------ELSKDLCNQEGVD----------- 283 (324)
Q Consensus 224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---------~~~~~~~~~~~i~----------- 283 (324)
.+++++|.||++||++|+...|.++++..++... ++.+..++++. .....+.++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~--g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g 115 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL--GLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNG 115 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC--ceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccC
Confidence 4678999999999999999999999999775433 57777777531 0012233333331
Q ss_pred -------------------------ccc---eEEEE-ecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086 284 -------------------------GFP---SIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVE 319 (324)
Q Consensus 284 -------------------------~~P---~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~ 319 (324)
.+| +.+++ ++|+.+..+.|..+.+.+.+.|.+.+++
T Consensus 116 ~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 116 ENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred CccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 122 34445 6788888888988888999999887764
No 215
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.53 E-value=1.5e-06 Score=68.66 Aligned_cols=92 Identities=13% Similarity=0.246 Sum_probs=70.8
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-----------------------------chhhh
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-----------------------------HRSIC 146 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-----------------------------~~~~~ 146 (324)
..++++++||++||+.|....+.+.++..++... ++.|+.+..+. ...++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~-~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~ 102 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK-GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA 102 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC-CeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence 4667899999999999999999999999999742 57777776542 13566
Q ss_pred hhCCccccceEEEEeCCeEeeeec-----------CCCCHHHHHHHHHhhhCCC
Q psy14086 147 QSFDIKSYPTLLWIESGKKLDKFQ-----------GSRTLETLVNYVSKMKGPL 189 (324)
Q Consensus 147 ~~~~i~~~P~~~~~~~g~~~~~~~-----------g~~~~~~i~~fi~~~~~~~ 189 (324)
+.|++...|++++++++..+. |. +..+.+++.+-|+..+.+.
T Consensus 103 ~~~~v~~~P~~~lid~~G~v~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 155 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGKLV-YRGRIDDSRPGNDPPVTGRDLRAALDALLAGK 155 (171)
T ss_pred HHcCCCcCCcEEEECCCCeEE-EeecccCCcccccccccHHHHHHHHHHHHcCC
Confidence 788999999999997643332 33 2246788999999998865
No 216
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.51 E-value=1.4e-07 Score=85.06 Aligned_cols=103 Identities=17% Similarity=0.344 Sum_probs=76.6
Q ss_pred eEeccc-ccccccc-C--CcEEEEEeCCCChhhhhhhHhHH-HHHHHhhcCCCCeEEEEEecCCc--cchhhhhhcCCCc
Q psy14086 212 VSLTSE-NFNDVIK-S--GTVFIKFFAPWCGHCKRLAPTWE-ELGTKLLDNKHGIVIAKVDCTQE--LSKDLCNQEGVDG 284 (324)
Q Consensus 212 ~~l~~~-~~~~~~~-~--~~~~v~f~~~~c~~C~~~~~~~~-~~a~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~i~~ 284 (324)
..++.. .+++... + ++++|+||++||-.||.+.+..- +.. . .....++.....|.+.+ ++.++.+++++-+
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~-v-~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G 534 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQ-V-QQALQDVVLLQADVTANDPAITALLKRLGVFG 534 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHH-H-HHhcCCeEEEEeeecCCCHHHHHHHHHcCCCC
Confidence 344444 4555553 2 38999999999999999877654 222 1 12233689999999873 3346778999999
Q ss_pred cceEEEEe-cCeeeeeecCCCCHHHHHHHHHhh
Q psy14086 285 FPSIYVYK-NGVRTAEYNGSRDLEELYQFILKH 316 (324)
Q Consensus 285 ~P~l~~~~-~g~~~~~~~g~~~~~~l~~fi~~~ 316 (324)
.|++++|+ +|++.....|..+.+.+.+++++.
T Consensus 535 ~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 535 VPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 99999997 677766688999999999999875
No 217
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.51 E-value=5.9e-07 Score=70.67 Aligned_cols=89 Identities=10% Similarity=0.013 Sum_probs=61.1
Q ss_pred CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc---------------------------cchhhh
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---------------------------LSKDLC 277 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~---------------------------~~~~~~ 277 (324)
++.++|.||+.||++|+.-.|.+.+++.+-+..+..=.-..||.++. ....+.
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~ 138 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVK 138 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHH
Confidence 57899999999999999999999999754222100000033333320 022455
Q ss_pred hhcCCCccceE-EEE-ecCeeeeeecCCCCHHHHHHHH
Q psy14086 278 NQEGVDGFPSI-YVY-KNGVRTAEYNGSRDLEELYQFI 313 (324)
Q Consensus 278 ~~~~i~~~P~l-~~~-~~g~~~~~~~g~~~~~~l~~fi 313 (324)
..+++.++|+. +++ ++|+.+..+.|..+.+++.+++
T Consensus 139 ~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 139 NAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred HhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 68899999877 566 6788888899998888877733
No 218
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.49 E-value=2.3e-06 Score=63.91 Aligned_cols=105 Identities=17% Similarity=0.318 Sum_probs=79.1
Q ss_pred CCeeEecccc-ccccccC-CcEEEEEeCCC--Chh-h-hhhhHhHHHHHHHhhcCCCC-eEEEEEecCCccchhhhhhcC
Q psy14086 209 EPVVSLTSEN-FNDVIKS-GTVFIKFFAPW--CGH-C-KRLAPTWEELGTKLLDNKHG-IVIAKVDCTQELSKDLCNQEG 281 (324)
Q Consensus 209 ~~v~~l~~~~-~~~~~~~-~~~~v~f~~~~--c~~-C-~~~~~~~~~~a~~~~~~~~~-~~~~~id~~~~~~~~~~~~~~ 281 (324)
..+..|+.++ +++.+.+ +.|+|.|.... |.. + ......+.++|++ +++ + +.|+++|++. ...+.+.||
T Consensus 2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~-~kg--k~i~Fv~vd~~~--~~~~~~~fg 76 (130)
T cd02983 2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEK-FKK--KPWGWLWTEAGA--QLDLEEALN 76 (130)
T ss_pred CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHH-hcC--CcEEEEEEeCcc--cHHHHHHcC
Confidence 3577888776 5666644 46888886421 332 3 3478889999966 555 5 9999999999 777999999
Q ss_pred CC--ccceEEEEecCe-eeeeecCCCCHHHHHHHHHhhcc
Q psy14086 282 VD--GFPSIYVYKNGV-RTAEYNGSRDLEELYQFILKHKV 318 (324)
Q Consensus 282 i~--~~P~l~~~~~g~-~~~~~~g~~~~~~l~~fi~~~~~ 318 (324)
++ ++|+++++...+ ++..+.|..+.++|.+|+.+.+.
T Consensus 77 l~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~ 116 (130)
T cd02983 77 IGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSY 116 (130)
T ss_pred CCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHc
Confidence 95 599999996543 55448899999999999999865
No 219
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.48 E-value=3.2e-07 Score=62.81 Aligned_cols=64 Identities=22% Similarity=0.455 Sum_probs=47.4
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHH---HHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeC
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVW---QELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIES 162 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~ 162 (324)
++++++|+|+++||++|+.+...+ .++.+.+.. ++.++.+|.+.........+ .++|+++++++
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~--~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ldp 82 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK--NFVLVKVDVDDEDPNAQFDR-QGYPTFFFLDP 82 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH--CSEEEEEETTTHHHHHHHHH-CSSSEEEEEET
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC--CEEEEEEEcCCCChhHHhCC-ccCCEEEEeCC
Confidence 567889999999999999998766 344443444 79999999886554332222 66999999864
No 220
>PLN02412 probable glutathione peroxidase
Probab=98.48 E-value=2.4e-06 Score=67.00 Aligned_cols=93 Identities=17% Similarity=0.199 Sum_probs=66.1
Q ss_pred cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC------ccchhh----hhhcC------------
Q psy14086 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ------ELSKDL----CNQEG------------ 281 (324)
Q Consensus 224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~------~~~~~~----~~~~~------------ 281 (324)
.+++++|.||++||+.|+...|.++++..++... ++.+.-++++. ....++ .++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~--g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~ 105 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ--GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVN 105 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC--CcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeC
Confidence 4578999999999999999999999999775433 57777776531 001111 12212
Q ss_pred ----------------------CCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086 282 ----------------------VDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKV 318 (324)
Q Consensus 282 ----------------------i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~ 318 (324)
+...|+.+++ ++|+.+..+.|..+.+++...|.+.++
T Consensus 106 g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 106 GKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 2334676677 678888888999999999999988765
No 221
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.48 E-value=6.3e-07 Score=81.01 Aligned_cols=99 Identities=16% Similarity=0.380 Sum_probs=76.9
Q ss_pred eEcChh-hHHHHh-cC--CCEEEEEeCCCCHhHhhHHHHHH---HHHHhcCCCCCeEEEEeccccc----hhhhhhCCcc
Q psy14086 84 VELTEE-SFEKYV-SL--GNHFVKFYAPWCGHCQSLAPVWQ---ELASHFKTEEDVSIAKIDCTQH----RSICQSFDIK 152 (324)
Q Consensus 84 ~~l~~~-~f~~~~-~~--~~~~v~f~~~~c~~c~~~~~~~~---~la~~~~~~~~i~~~~vd~~~~----~~~~~~~~i~ 152 (324)
..++.. ..++.+ +. +++++.||++||-.|+.+.+..- ++..+.. ++...++|.+++ .++.++||+-
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~---~~vlLqaDvT~~~p~~~~lLk~~~~~ 533 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ---DVVLLQADVTANDPAITALLKRLGVF 533 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC---CeEEEEeeecCCCHHHHHHHHHcCCC
Confidence 444444 666666 33 37899999999999999887543 3333444 599999998854 5788999999
Q ss_pred ccceEEEEeC-CeEeeeecCCCCHHHHHHHHHhh
Q psy14086 153 SYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKM 185 (324)
Q Consensus 153 ~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~ 185 (324)
+.|++++|+. |+......|..+++.+.+++++.
T Consensus 534 G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 534 GVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 9999999984 66666688999999999999875
No 222
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.47 E-value=9.4e-07 Score=65.17 Aligned_cols=73 Identities=14% Similarity=0.168 Sum_probs=45.8
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHH---HHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeC-CeEeeeecC
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVW---QELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIES-GKKLDKFQG 171 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~-g~~~~~~~g 171 (324)
++++++|+|++.||++|+.+.... .++.+.... .+..+.++.+....-....| ..+|++++++. |+...+..|
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~~i~G 98 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRADITG 98 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCcccccc
Confidence 566889999999999999998754 234444433 46655666542211111234 57999999976 544433333
No 223
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.47 E-value=2e-06 Score=71.94 Aligned_cols=101 Identities=23% Similarity=0.359 Sum_probs=76.6
Q ss_pred CCceEcC-hhhHHHHhcCC----CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccc
Q psy14086 81 EGLVELT-EESFEKYVSLG----NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYP 155 (324)
Q Consensus 81 ~~~~~l~-~~~f~~~~~~~----~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P 155 (324)
..+.+++ .+.|...+.+. .++|+||.+.++.|..+...|..||.+|.. +.|+++.+...+ +...|.+...|
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~---vKFvkI~a~~~~-~~~~f~~~~LP 200 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE---VKFVKIRASKCP-ASENFPDKNLP 200 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT---SEEEEEEECGCC-TTTTS-TTC-S
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc---eEEEEEehhccC-cccCCcccCCC
Confidence 4677885 57888877432 368999999999999999999999999986 999999877654 78899999999
Q ss_pred eEEEEeCCeEeeeecC-------CCCHHHHHHHHHhh
Q psy14086 156 TLLWIESGKKLDKFQG-------SRTLETLVNYVSKM 185 (324)
Q Consensus 156 ~~~~~~~g~~~~~~~g-------~~~~~~i~~fi~~~ 185 (324)
+|++|++|..+..+.| .++..+|..|+.++
T Consensus 201 tllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 201 TLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 9999999987766643 36788899988865
No 224
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.46 E-value=1.7e-06 Score=72.38 Aligned_cols=101 Identities=23% Similarity=0.374 Sum_probs=74.0
Q ss_pred CCeeEecc-ccccccccC----CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCC
Q psy14086 209 EPVVSLTS-ENFNDVIKS----GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD 283 (324)
Q Consensus 209 ~~v~~l~~-~~~~~~~~~----~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~ 283 (324)
+.|..|+. +.|.+.+.. ..|+|.||.+.+..|..+-..|..||.+ +. .+.|++|.+.. .+ +...|.+.
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~k-yp---~vKFvkI~a~~--~~-~~~~f~~~ 197 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARK-YP---EVKFVKIRASK--CP-ASENFPDK 197 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH--T---TSEEEEEEECG--CC-TTTTS-TT
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHh-CC---ceEEEEEehhc--cC-cccCCccc
Confidence 67888865 667776643 2499999999999999999999999976 33 48999999876 33 66889999
Q ss_pred ccceEEEEecCeeeeeecC-------CCCHHHHHHHHHhh
Q psy14086 284 GFPSIYVYKNGVRTAEYNG-------SRDLEELYQFILKH 316 (324)
Q Consensus 284 ~~P~l~~~~~g~~~~~~~g-------~~~~~~l~~fi~~~ 316 (324)
.+|+|++|++|..+..+.| ..+..+|..||.++
T Consensus 198 ~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 198 NLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp C-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 9999999999976544432 36678999999875
No 225
>KOG2501|consensus
Probab=98.45 E-value=6.2e-07 Score=67.42 Aligned_cols=76 Identities=24% Similarity=0.500 Sum_probs=57.4
Q ss_pred cccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-----------------------cchhhhh
Q psy14086 222 VIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-----------------------LSKDLCN 278 (324)
Q Consensus 222 ~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-----------------------~~~~~~~ 278 (324)
..+++.+.++|.+.||++|+.+.|.+.++-.+....+..+.++.++.+.. ...++.+
T Consensus 30 ~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ 109 (157)
T KOG2501|consen 30 ALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSE 109 (157)
T ss_pred hhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHH
Confidence 44567899999999999999999999988866554444566666666551 1136677
Q ss_pred hcCCCccceEEEEe-cCeee
Q psy14086 279 QEGVDGFPSIYVYK-NGVRT 297 (324)
Q Consensus 279 ~~~i~~~P~l~~~~-~g~~~ 297 (324)
+|+|.++|++++.+ +|..+
T Consensus 110 ky~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 110 KYEVKGIPALVILKPDGTVV 129 (157)
T ss_pred hcccCcCceeEEecCCCCEe
Confidence 89999999998885 66554
No 226
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.45 E-value=2.7e-06 Score=68.23 Aligned_cols=101 Identities=16% Similarity=0.240 Sum_probs=62.9
Q ss_pred CeeEeccccccc---cccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC----------------
Q psy14086 210 PVVSLTSENFND---VIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---------------- 270 (324)
Q Consensus 210 ~v~~l~~~~~~~---~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---------------- 270 (324)
.+..++++.+.- ...+++++|.||++||++|+...|.+.++.++ .. .++.++..+...
T Consensus 56 ~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~-~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~ 132 (189)
T TIGR02661 56 NLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARA-EE--TDVVMISDGTPAEHRRFLKDHELGGERY 132 (189)
T ss_pred EecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHh-cC--CcEEEEeCCCHHHHHHHHHhcCCCccee
Confidence 344455554321 23456899999999999999999999998743 21 234433311000
Q ss_pred ccchhhhhhcCCCccceEEEEe-cCeeeeeecCC-CCHHHHHHHHHh
Q psy14086 271 ELSKDLCNQEGVDGFPSIYVYK-NGVRTAEYNGS-RDLEELYQFILK 315 (324)
Q Consensus 271 ~~~~~~~~~~~i~~~P~l~~~~-~g~~~~~~~g~-~~~~~l~~fi~~ 315 (324)
....++.+.|++.++|+.+++. +|+.. +.|. .+.+.+.+.+..
T Consensus 133 ~~~~~i~~~y~v~~~P~~~lID~~G~I~--~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 133 VVSAEIGMAFQVGKIPYGVLLDQDGKIR--AKGLTNTREHLESLLEA 177 (189)
T ss_pred echhHHHHhccCCccceEEEECCCCeEE--EccCCCCHHHHHHHHHH
Confidence 0124666788999999988874 66554 3454 355666666653
No 227
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.43 E-value=1.3e-06 Score=67.52 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=35.3
Q ss_pred CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc
Q psy14086 97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC 139 (324)
Q Consensus 97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~ 139 (324)
.++++|.||++||+ |...+|.+++++++++.. .+.++.|++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~-~~~vv~v~~ 62 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR-GLVVLGFPC 62 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC-CEEEEEecc
Confidence 56789999999999 999999999999999753 588887764
No 228
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.43 E-value=2.7e-06 Score=65.78 Aligned_cols=89 Identities=13% Similarity=0.253 Sum_probs=64.5
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-----------cchhhhhh-CCc------------
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-----------QHRSICQS-FDI------------ 151 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-----------~~~~~~~~-~~i------------ 151 (324)
..++++|.||++||++|...+|.+.+++++++.+ .+.++.+++. .-..++++ +++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~-~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~ 99 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPS-HFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILG 99 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC-CeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCC
Confidence 3556789999999999999999999999999753 5888877751 11223322 221
Q ss_pred -----------c---ccce----EEEEeC-CeEeeeecCCCCHHHHHHHHHhh
Q psy14086 152 -----------K---SYPT----LLWIES-GKKLDKFQGSRTLETLVNYVSKM 185 (324)
Q Consensus 152 -----------~---~~P~----~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~ 185 (324)
. ..|+ .++++. |+...+|.|..+.++|...|++.
T Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 100 SEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 1 2564 555544 88888899999999998888764
No 229
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.42 E-value=1.4e-06 Score=58.11 Aligned_cols=69 Identities=16% Similarity=0.360 Sum_probs=52.3
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh----hhhhCCccccceEEEEeCCeEeeeecCCCCHH
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS----ICQSFDIKSYPTLLWIESGKKLDKFQGSRTLE 176 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~ 176 (324)
+..|+++||++|+...+.|.+. .+.+..+|++.+.. +.+.+++.++|++++. |+. ..| .+.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g-~~~~ 67 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK--------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVG-FDPE 67 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC--------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---Eee-CCHH
Confidence 5689999999999998877651 47788888876543 5667999999999874 432 455 5788
Q ss_pred HHHHHHH
Q psy14086 177 TLVNYVS 183 (324)
Q Consensus 177 ~i~~fi~ 183 (324)
.|.+||+
T Consensus 68 ~i~~~i~ 74 (74)
T TIGR02196 68 KLDQLLE 74 (74)
T ss_pred HHHHHhC
Confidence 8888873
No 230
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.42 E-value=3.5e-06 Score=68.56 Aligned_cols=84 Identities=21% Similarity=0.333 Sum_probs=66.1
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---------cchhhhhhCCccccceEEEEeCCe--
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---------QHRSICQSFDIKSYPTLLWIESGK-- 164 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---------~~~~~~~~~~i~~~P~~~~~~~g~-- 164 (324)
.++.-+++||.+.|+.|..+.|.++.++.+++= .+..+.+|.. .+..+++++||..+|+++++..+.
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~--~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYGF--SVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCC--EEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 344459999999999999999999999999954 4555555532 357899999999999999998743
Q ss_pred EeeeecCCCCHHHHHHH
Q psy14086 165 KLDKFQGSRTLETLVNY 181 (324)
Q Consensus 165 ~~~~~~g~~~~~~i~~f 181 (324)
....-.|..+.++|.+=
T Consensus 197 ~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 197 WYPVSQGFMSLDELEDR 213 (215)
T ss_pred EEEEeeecCCHHHHHHh
Confidence 34445688999888763
No 231
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.42 E-value=1.5e-06 Score=58.04 Aligned_cols=69 Identities=25% Similarity=0.443 Sum_probs=51.6
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccch----hhhhhcCCCccceEEEEecCeeeeeecCCC
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK----DLCNQEGVDGFPSIYVYKNGVRTAEYNGSR 304 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~ 304 (324)
+..|+++||++|+.+.+.|.+. ++.+..+|++. ++ ++.+.+++.++|++++. |+. ..| .
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~~--~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g-~ 64 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK---------GIAFEEIDVEK--DSAAREEVLKVLGQRGVPVIVIG--HKI---IVG-F 64 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC---------CCeEEEEeccC--CHHHHHHHHHHhCCCcccEEEEC--CEE---Eee-C
Confidence 5689999999999998777542 46778888876 33 34567899999999874 533 556 4
Q ss_pred CHHHHHHHHH
Q psy14086 305 DLEELYQFIL 314 (324)
Q Consensus 305 ~~~~l~~fi~ 314 (324)
+.+.|.++|+
T Consensus 65 ~~~~i~~~i~ 74 (74)
T TIGR02196 65 DPEKLDQLLE 74 (74)
T ss_pred CHHHHHHHhC
Confidence 7788888763
No 232
>KOG1672|consensus
Probab=98.41 E-value=1.2e-06 Score=67.47 Aligned_cols=87 Identities=22% Similarity=0.342 Sum_probs=77.0
Q ss_pred CceEcC-hhhHHHHh-cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086 82 GLVELT-EESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW 159 (324)
Q Consensus 82 ~~~~l~-~~~f~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~ 159 (324)
...++. +..|.... ....+++.||-+.-..|+-+-..|..||..+-+ ..|++||+...+-++.+++|+.+|++.+
T Consensus 67 ~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e---TrFikvnae~~PFlv~kL~IkVLP~v~l 143 (211)
T KOG1672|consen 67 EYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE---TRFIKVNAEKAPFLVTKLNIKVLPTVAL 143 (211)
T ss_pred eEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc---ceEEEEecccCceeeeeeeeeEeeeEEE
Confidence 466665 66777777 555789999999999999999999999999876 8999999999999999999999999999
Q ss_pred EeCCeEeeeecC
Q psy14086 160 IESGKKLDKFQG 171 (324)
Q Consensus 160 ~~~g~~~~~~~g 171 (324)
|.+|....++.|
T Consensus 144 ~k~g~~~D~iVG 155 (211)
T KOG1672|consen 144 FKNGKTVDYVVG 155 (211)
T ss_pred EEcCEEEEEEee
Confidence 999988877765
No 233
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.40 E-value=3.7e-06 Score=56.55 Aligned_cols=71 Identities=25% Similarity=0.502 Sum_probs=54.7
Q ss_pred EeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecC-CCCHHHHHHHH
Q psy14086 104 FYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQG-SRTLETLVNYV 182 (324)
Q Consensus 104 f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g-~~~~~~i~~fi 182 (324)
+++++|+.|..+...+++++..+. +.+-.+|....+.+ .+|||.++|++++ +|+. ++.| ..+.+.|.+||
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~--~~~G~~p~~~el~~~l 75 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELG----IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKV--VFVGRVPSKEELKELL 75 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEE--EEESS--HHHHHHHHH
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEE--EEEecCCCHHHHHHHh
Confidence 478889999999999999999983 55666666666666 9999999999965 5653 4889 68889999887
Q ss_pred H
Q psy14086 183 S 183 (324)
Q Consensus 183 ~ 183 (324)
+
T Consensus 76 ~ 76 (76)
T PF13192_consen 76 E 76 (76)
T ss_dssp H
T ss_pred C
Confidence 4
No 234
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.40 E-value=1.6e-06 Score=63.42 Aligned_cols=82 Identities=32% Similarity=0.697 Sum_probs=66.1
Q ss_pred CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-cchhhhhhCC--ccccceEEEEeCCeEeeeecC--
Q psy14086 97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-QHRSICQSFD--IKSYPTLLWIESGKKLDKFQG-- 171 (324)
Q Consensus 97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-~~~~~~~~~~--i~~~P~~~~~~~g~~~~~~~g-- 171 (324)
..+.++.||++||++|+.+.|.+.+++..+.. .+.+..+|.. ....+...++ +..+|+++++.++.....+.+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 109 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGK 109 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcc
Confidence 55678888999999999999999999999986 6899999987 7889999999 899999998887765444444
Q ss_pred CCCHHHHHH
Q psy14086 172 SRTLETLVN 180 (324)
Q Consensus 172 ~~~~~~i~~ 180 (324)
......+..
T Consensus 110 ~~~~~~~~~ 118 (127)
T COG0526 110 VLPKEALID 118 (127)
T ss_pred cCCHHHHHH
Confidence 344444433
No 235
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.38 E-value=7.7e-07 Score=60.94 Aligned_cols=62 Identities=27% Similarity=0.572 Sum_probs=44.5
Q ss_pred CCcEEEEEeCCCChhhhhhhHhH---HHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEe
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPTW---EELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK 292 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~~---~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~ 292 (324)
+++++|+|+++||+.|+.+...+ .++. +.... ++.++.+|.+. .+... .+...++|+++++.
T Consensus 17 ~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~-~~~~~--~fv~v~vd~~~--~~~~~-~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 17 GKPVLVDFGADWCPPCKKLEREVFSDPEVQ-EALNK--NFVLVKVDVDD--EDPNA-QFDRQGYPTFFFLD 81 (82)
T ss_dssp TSEEEEEEETTTTHHHHHHHHHTTTSHHHH-HHHHH--CSEEEEEETTT--HHHHH-HHHHCSSSEEEEEE
T ss_pred CCCEEEEEECCCCHhHHHHHHHHcCCHHHH-HHHHC--CEEEEEEEcCC--CChhH-HhCCccCCEEEEeC
Confidence 57899999999999999987766 2344 32333 69999999977 33322 22226799999875
No 236
>KOG2501|consensus
Probab=98.37 E-value=9.4e-07 Score=66.46 Aligned_cols=73 Identities=18% Similarity=0.473 Sum_probs=56.0
Q ss_pred HhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCC---CeEEEEeccccc-----------------------hhhhh
Q psy14086 94 YVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEE---DVSIAKIDCTQH-----------------------RSICQ 147 (324)
Q Consensus 94 ~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~---~i~~~~vd~~~~-----------------------~~~~~ 147 (324)
.+.++.+.++|.+.||++|+++.|.+.++++...... .|.|+.-|-+.. .++++
T Consensus 30 ~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ 109 (157)
T KOG2501|consen 30 ALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSE 109 (157)
T ss_pred hhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHH
Confidence 4456677899999999999999999999999887741 355555554322 56788
Q ss_pred hCCccccceEEEEeC-CeEe
Q psy14086 148 SFDIKSYPTLLWIES-GKKL 166 (324)
Q Consensus 148 ~~~i~~~P~~~~~~~-g~~~ 166 (324)
+|+|.++|+++++.+ |..+
T Consensus 110 ky~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 110 KYEVKGIPALVILKPDGTVV 129 (157)
T ss_pred hcccCcCceeEEecCCCCEe
Confidence 999999999999877 4343
No 237
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.36 E-value=2.3e-06 Score=62.60 Aligned_cols=84 Identities=27% Similarity=0.595 Sum_probs=64.8
Q ss_pred CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC-CccchhhhhhcC--CCccceEEEEecCeeeeeec
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT-QELSKDLCNQEG--VDGFPSIYVYKNGVRTAEYN 301 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~-~~~~~~~~~~~~--i~~~P~l~~~~~g~~~~~~~ 301 (324)
++++++.||++||++|+...|.+.+++.+ +.. .+.+..+|.. . ..++...++ +..+|+++++.+|.....+.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~-~~~--~~~~~~i~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 106 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEE-YGG--DVEVVAVNVDDE--NPDLAAEFGVAVRSIPTLLLFKDGKEVDRLV 106 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHH-hcC--CcEEEEEECCCC--ChHHHHHHhhhhccCCeEEEEeCcchhhhhh
Confidence 56788888999999999999999999966 443 5888889986 5 688888999 88999999888886654445
Q ss_pred C--CCCHHHHHHHH
Q psy14086 302 G--SRDLEELYQFI 313 (324)
Q Consensus 302 g--~~~~~~l~~fi 313 (324)
| ......+..-.
T Consensus 107 ~~~~~~~~~~~~~~ 120 (127)
T COG0526 107 GGKVLPKEALIDAL 120 (127)
T ss_pred hcccCCHHHHHHHh
Confidence 4 34444444433
No 238
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.34 E-value=5.7e-06 Score=65.98 Aligned_cols=90 Identities=19% Similarity=0.300 Sum_probs=63.2
Q ss_pred CCCE-EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-------c----hhh-hhhC--------------
Q psy14086 97 LGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-------H----RSI-CQSF-------------- 149 (324)
Q Consensus 97 ~~~~-~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-------~----~~~-~~~~-------------- 149 (324)
.+++ ++.+|++||++|...+|.++++.+++++. .+.++.++++. . ..+ .+++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~-gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g 118 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ-GLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG 118 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC-CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence 4444 45669999999999999999999999763 58888776521 0 011 1111
Q ss_pred ----------------------Cccccce---EEEEe-CCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086 150 ----------------------DIKSYPT---LLWIE-SGKKLDKFQGSRTLETLVNYVSKMKG 187 (324)
Q Consensus 150 ----------------------~i~~~P~---~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~ 187 (324)
++..+|+ .++++ +|....+|.|..+.+.+.+.|.+.+.
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 2345684 35554 48888889999999999998887764
No 239
>KOG2603|consensus
Probab=98.34 E-value=5.8e-06 Score=68.66 Aligned_cols=109 Identities=17% Similarity=0.337 Sum_probs=87.1
Q ss_pred CCceEcChhhHHHHhcCCC----EEEEEeC----CCCHhHhhHHHHHHHHHHhcCCC------CCeEEEEeccccchhhh
Q psy14086 81 EGLVELTEESFEKYVSLGN----HFVKFYA----PWCGHCQSLAPVWQELASHFKTE------EDVSIAKIDCTQHRSIC 146 (324)
Q Consensus 81 ~~~~~l~~~~f~~~~~~~~----~~v~f~~----~~c~~c~~~~~~~~~la~~~~~~------~~i~~~~vd~~~~~~~~ 146 (324)
+++..+++++|.+++...+ .+++|.| ..|.-|.++..+++-+|+.++.. .++-|..||.++.+++.
T Consensus 40 ~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~F 119 (331)
T KOG2603|consen 40 SGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVF 119 (331)
T ss_pred CCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHH
Confidence 4799999999999996543 4677777 34999999999999999998663 26899999999999999
Q ss_pred hhCCccccceEEEEeCCeEee----eec---CCCCHHHHHHHHHhhhCCC
Q psy14086 147 QSFDIKSYPTLLWIESGKKLD----KFQ---GSRTLETLVNYVSKMKGPL 189 (324)
Q Consensus 147 ~~~~i~~~P~~~~~~~g~~~~----~~~---g~~~~~~i~~fi~~~~~~~ 189 (324)
+.++++..|++++|.+.+... .+. -...+|++.+|+.+..+-.
T Consensus 120 q~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~ 169 (331)
T KOG2603|consen 120 QQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVN 169 (331)
T ss_pred HHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhe
Confidence 999999999999996632111 111 1245999999999987744
No 240
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.33 E-value=1.7e-05 Score=56.76 Aligned_cols=108 Identities=19% Similarity=0.390 Sum_probs=78.2
Q ss_pred CCeeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---ccchhhhhhcCCC-
Q psy14086 209 EPVVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---ELSKDLCNQEGVD- 283 (324)
Q Consensus 209 ~~v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---~~~~~~~~~~~i~- 283 (324)
.....|+.-+|++++.. +.++|.|=... +.-.-...+.++|.+......++.++.+-+.. .+|.++.++|++.
T Consensus 4 ~G~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 4 KGCVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TTSEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred CceeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 34678889999999965 46899995432 33456778888885545566689999998865 3578999999994
Q ss_pred -ccceEEEEecC-eeeeee--cCCCCHHHHHHHHHhhcc
Q psy14086 284 -GFPSIYVYKNG-VRTAEY--NGSRDLEELYQFILKHKV 318 (324)
Q Consensus 284 -~~P~l~~~~~g-~~~~~~--~g~~~~~~l~~fi~~~~~ 318 (324)
.+|.+++|..| ..+..| .|..+.+.|.+|+.++.+
T Consensus 82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 79999999844 556678 888999999999998743
No 241
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.33 E-value=5.3e-06 Score=64.17 Aligned_cols=91 Identities=16% Similarity=0.220 Sum_probs=62.8
Q ss_pred cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC--------C-ccchhhhhh-cCC-----------
Q psy14086 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT--------Q-ELSKDLCNQ-EGV----------- 282 (324)
Q Consensus 224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~--------~-~~~~~~~~~-~~i----------- 282 (324)
.+++++|.||++||++|+...|.+.++..++... ++.+..+++. . .....+.++ +++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~--~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~ 98 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPS--HFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKIL 98 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC--CeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecC
Confidence 4577899999999999999999999999664433 5777777741 1 001112211 111
Q ss_pred ---------------Cccce----EEEE-ecCeeeeeecCCCCHHHHHHHHHhh
Q psy14086 283 ---------------DGFPS----IYVY-KNGVRTAEYNGSRDLEELYQFILKH 316 (324)
Q Consensus 283 ---------------~~~P~----l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~ 316 (324)
.++|+ .+++ ++|+.+..+.|..+.+.|...|.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 99 GSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 13674 4555 6788888899999999888888654
No 242
>KOG1672|consensus
Probab=98.33 E-value=3.5e-06 Score=64.99 Aligned_cols=100 Identities=20% Similarity=0.278 Sum_probs=79.9
Q ss_pred CCeeEec-cccccccc-cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086 209 EPVVSLT-SENFNDVI-KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP 286 (324)
Q Consensus 209 ~~v~~l~-~~~~~~~~-~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P 286 (324)
+....+. ..+|-+.+ .+..+++.||-|.-..|+-+-.+++.+|..+. ...|.++|+.. .+-++.+++|.-+|
T Consensus 66 G~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~----eTrFikvnae~--~PFlv~kL~IkVLP 139 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV----ETRFIKVNAEK--APFLVTKLNIKVLP 139 (211)
T ss_pred ceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcc----cceEEEEeccc--CceeeeeeeeeEee
Confidence 4567776 45566555 56789999999999999999999999996643 47899999999 89999999999999
Q ss_pred eEEEEecCeeeeeecCC--------CCHHHHHHHHH
Q psy14086 287 SIYVYKNGVRTAEYNGS--------RDLEELYQFIL 314 (324)
Q Consensus 287 ~l~~~~~g~~~~~~~g~--------~~~~~l~~fi~ 314 (324)
++++|++|..+..+.|- .+.+.|..-|-
T Consensus 140 ~v~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~ 175 (211)
T KOG1672|consen 140 TVALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLA 175 (211)
T ss_pred eEEEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHh
Confidence 99999999877665552 44555555553
No 243
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.30 E-value=1.1e-05 Score=63.75 Aligned_cols=100 Identities=10% Similarity=0.219 Sum_probs=69.4
Q ss_pred ccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc---------------------------
Q psy14086 219 FNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------------- 271 (324)
Q Consensus 219 ~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------------- 271 (324)
+.++..+++++|+||++||+.|....+.+.++..++-.. ++.++.+..+..
T Consensus 19 l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~--~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D 96 (171)
T cd02969 19 LADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK--GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLD 96 (171)
T ss_pred HHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC--CeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEEC
Confidence 333335678999999999999999999999999664333 577777765420
Q ss_pred cchhhhhhcCCCccceEEEEe-cCeeeeee---------cCCCCHHHHHHHHHhhcccC
Q psy14086 272 LSKDLCNQEGVDGFPSIYVYK-NGVRTAEY---------NGSRDLEELYQFILKHKVES 320 (324)
Q Consensus 272 ~~~~~~~~~~i~~~P~l~~~~-~g~~~~~~---------~g~~~~~~l~~fi~~~~~~~ 320 (324)
....+.+.|++...|+++++. +|+.+... .+..+.+++.+-|...++..
T Consensus 97 ~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 155 (171)
T cd02969 97 ETQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGK 155 (171)
T ss_pred CchHHHHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCC
Confidence 123556678999999999995 66544221 12235678888888876643
No 244
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.29 E-value=7.4e-06 Score=55.05 Aligned_cols=71 Identities=27% Similarity=0.505 Sum_probs=52.8
Q ss_pred EeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecC-CCCHHHHH
Q psy14086 232 FFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNG-SRDLEELY 310 (324)
Q Consensus 232 f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g-~~~~~~l~ 310 (324)
+++++|+.|..+...+++++..+ ++.+-.++... .+++ .+||+.++|++++ +|+. .+.| .-+.++|.
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~-----~i~~ei~~~~~--~~~~-~~ygv~~vPalvI--ng~~--~~~G~~p~~~el~ 72 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEEL-----GIEVEIIDIED--FEEI-EKYGVMSVPALVI--NGKV--VFVGRVPSKEELK 72 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHT-----TEEEEEEETTT--HHHH-HHTT-SSSSEEEE--TTEE--EEESS--HHHHHH
T ss_pred EeCCCCCCcHHHHHHHHHHHHhc-----CCeEEEEEccC--HHHH-HHcCCCCCCEEEE--CCEE--EEEecCCCHHHHH
Confidence 36788999999999999998552 35566677755 5666 9999999999954 6754 4778 56788999
Q ss_pred HHHH
Q psy14086 311 QFIL 314 (324)
Q Consensus 311 ~fi~ 314 (324)
+||+
T Consensus 73 ~~l~ 76 (76)
T PF13192_consen 73 ELLE 76 (76)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8874
No 245
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.29 E-value=3.8e-06 Score=64.89 Aligned_cols=86 Identities=27% Similarity=0.414 Sum_probs=57.4
Q ss_pred cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---------ccchhhhhh-cC------------
Q psy14086 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---------ELSKDLCNQ-EG------------ 281 (324)
Q Consensus 224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---------~~~~~~~~~-~~------------ 281 (324)
.+++++|.||+.||+ |+...|.++++.+++... ++.+..++++. .....+.++ ++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~ 97 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR--GLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVN 97 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC--CEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEecc
Confidence 367899999999999 999999999999764333 57777775421 001122221 22
Q ss_pred -----------CCccc-----------eEEEE-ecCeeeeeecCCCCHHHHHHH
Q psy14086 282 -----------VDGFP-----------SIYVY-KNGVRTAEYNGSRDLEELYQF 312 (324)
Q Consensus 282 -----------i~~~P-----------~l~~~-~~g~~~~~~~g~~~~~~l~~f 312 (324)
+.++| +.+++ ++|+.+..+.|..+.+.|.+.
T Consensus 98 ~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 98 GENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 23456 45555 678888889998888777653
No 246
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.29 E-value=3.5e-06 Score=54.22 Aligned_cols=60 Identities=33% Similarity=0.739 Sum_probs=50.1
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhh---hCCccccceEEEEeCC
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQ---SFDIKSYPTLLWIESG 163 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~---~~~i~~~P~~~~~~~g 163 (324)
++.|++.||++|..+.+.+.++ ..... ++.+..++++....... .+++..+|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNK--GVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCC--CcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 33333 69999999987766554 7899999999999877
No 247
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.1e-05 Score=59.91 Aligned_cols=90 Identities=17% Similarity=0.308 Sum_probs=67.6
Q ss_pred CCCEEEEEeCCCCHhHhhHHHHH---HHHHHhcCCCCCeEEEEecccc----------------chhhhhhCCccccceE
Q psy14086 97 LGNHFVKFYAPWCGHCQSLAPVW---QELASHFKTEEDVSIAKIDCTQ----------------HRSICQSFDIKSYPTL 157 (324)
Q Consensus 97 ~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~i~~~~vd~~~----------------~~~~~~~~~i~~~P~~ 157 (324)
++-.+++|-++.|.+|.++...+ .++-+-+.+ .+.++.+++.. ..++++.|++++.|++
T Consensus 42 ~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~--hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf 119 (182)
T COG2143 42 DKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE--HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF 119 (182)
T ss_pred CcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh--CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence 34468999999999999987654 334444444 57777666642 2589999999999999
Q ss_pred EEEeC-CeEeeeecCCCCHHHHHHHHHhhhCC
Q psy14086 158 LWIES-GKKLDKFQGSRTLETLVNYVSKMKGP 188 (324)
Q Consensus 158 ~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~~ 188 (324)
++|+. |+.+....|...++++..-++-...+
T Consensus 120 vFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g 151 (182)
T COG2143 120 VFFDKTGKTILELPGYMPPEQFLAVLKYVADG 151 (182)
T ss_pred EEEcCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 99987 67777778999999887766655443
No 248
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.28 E-value=6.6e-06 Score=67.00 Aligned_cols=84 Identities=20% Similarity=0.313 Sum_probs=63.1
Q ss_pred CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---------ccchhhhhhcCCCccceEEEEe-cC
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---------ELSKDLCNQEGVDGFPSIYVYK-NG 294 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---------~~~~~~~~~~~i~~~P~l~~~~-~g 294 (324)
++--+++||.+.|+.|..+.|+++.++.++ ++.+..|+.+. ..+..+.++++|..+|+++++. ++
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-----g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~ 194 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKY-----GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNT 194 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHh-----CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCC
Confidence 456799999999999999999999999663 34444444442 0146788899999999999885 34
Q ss_pred -eeeeeecCCCCHHHHHHHH
Q psy14086 295 -VRTAEYNGSRDLEELYQFI 313 (324)
Q Consensus 295 -~~~~~~~g~~~~~~l~~fi 313 (324)
+...+-.|..+.++|.+-|
T Consensus 195 ~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 195 KKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred CeEEEEeeecCCHHHHHHhh
Confidence 3344556889998887654
No 249
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.26 E-value=5.1e-06 Score=56.01 Aligned_cols=70 Identities=19% Similarity=0.420 Sum_probs=46.8
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhh-----cCCCccceEEEEecCeeeeeecCC
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQ-----EGVDGFPSIYVYKNGVRTAEYNGS 303 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~-----~~i~~~P~l~~~~~g~~~~~~~g~ 303 (324)
++.|+++||++|+.+.+.+.++. +.+-.+|++. ++..... +++.++|++ ++.+|.... .
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~---------~~~~~idi~~--~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~----~ 65 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG---------AAYEWVDIEE--DEGAADRVVSVNNGNMTVPTV-KFADGSFLT----N 65 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC---------CceEEEeCcC--CHhHHHHHHHHhCCCceeCEE-EECCCeEec----C
Confidence 57899999999999999886654 3445677766 4444333 378899997 467775432 2
Q ss_pred CCHHHHHHHHH
Q psy14086 304 RDLEELYQFIL 314 (324)
Q Consensus 304 ~~~~~l~~fi~ 314 (324)
-+..++.+.|.
T Consensus 66 ~~~~~~~~~l~ 76 (77)
T TIGR02200 66 PSAAQVKAKLQ 76 (77)
T ss_pred CCHHHHHHHhh
Confidence 34556655543
No 250
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.23 E-value=6.3e-06 Score=55.52 Aligned_cols=70 Identities=16% Similarity=0.322 Sum_probs=48.2
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhh-----CCccccceEEEEeCCeEeeeecCCCCH
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQS-----FDIKSYPTLLWIESGKKLDKFQGSRTL 175 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~-----~~i~~~P~~~~~~~g~~~~~~~g~~~~ 175 (324)
++.|+++||++|+.+.+.+.++. +.+-.+|++.+...... +++.++|++ ++.+|... ...+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~--------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l----~~~~~ 68 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG--------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFL----TNPSA 68 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC--------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEe----cCCCH
Confidence 57899999999999998887653 34455677666555554 388899987 46666443 24456
Q ss_pred HHHHHHHH
Q psy14086 176 ETLVNYVS 183 (324)
Q Consensus 176 ~~i~~fi~ 183 (324)
.++.+.++
T Consensus 69 ~~~~~~l~ 76 (77)
T TIGR02200 69 AQVKAKLQ 76 (77)
T ss_pred HHHHHHhh
Confidence 66666553
No 251
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.22 E-value=1.5e-05 Score=60.55 Aligned_cols=86 Identities=16% Similarity=0.204 Sum_probs=62.7
Q ss_pred CCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-------------------ccchhhhhhcCCCc
Q psy14086 225 SGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-------------------ELSKDLCNQEGVDG 284 (324)
Q Consensus 225 ~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-------------------~~~~~~~~~~~i~~ 284 (324)
+++++|.|| +.||+.|....+.+.++..++... ++.++.+..+. +....+.+.|++..
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 100 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL--GAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWG 100 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcc
Confidence 678999999 589999999999999988665433 46666665543 11346677788887
Q ss_pred c---------ceEEEEe-cCeeeeeecCCCCHHHHHHH
Q psy14086 285 F---------PSIYVYK-NGVRTAEYNGSRDLEELYQF 312 (324)
Q Consensus 285 ~---------P~l~~~~-~g~~~~~~~g~~~~~~l~~f 312 (324)
. |+.+++. +|+.+..+.|..+...+.+-
T Consensus 101 ~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 101 EKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred ccccccCCcceeEEEECCCCEEEEEEecCCccchHHHH
Confidence 7 8888885 68877788887666655543
No 252
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.19 E-value=2.5e-05 Score=64.76 Aligned_cols=90 Identities=20% Similarity=0.225 Sum_probs=70.5
Q ss_pred CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc---------chhhhhhCCccccceEEEEeCC--eE
Q psy14086 97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ---------HRSICQSFDIKSYPTLLWIESG--KK 165 (324)
Q Consensus 97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~---------~~~~~~~~~i~~~P~~~~~~~g--~~ 165 (324)
++--+++||...|+.|.++.|.++.++++++= .+..+.+|... +...++++||+.+|++++...+ +.
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGI--SVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 33458999999999999999999999999965 56666666542 2568899999999999999774 23
Q ss_pred eeeecCCCCHHHHHHHHHhhhCC
Q psy14086 166 LDKFQGSRTLETLVNYVSKMKGP 188 (324)
Q Consensus 166 ~~~~~g~~~~~~i~~fi~~~~~~ 188 (324)
...-.|..+.++|.+=|...+..
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v~~~ 250 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNVLTQ 250 (256)
T ss_pred EEEeeccCCHHHHHHHHHHHHhc
Confidence 33346889999998887776653
No 253
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.19 E-value=7.6e-06 Score=52.58 Aligned_cols=60 Identities=35% Similarity=0.800 Sum_probs=48.2
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhh---hcCCCccceEEEEecC
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCN---QEGVDGFPSIYVYKNG 294 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~---~~~i~~~P~l~~~~~g 294 (324)
++.|+..||+.|..+.+.+.++. . ... ++.+..++++. ...... .+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~-~-~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELA-L-LNK--GVKFEAVDVDE--DPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHH-h-hCC--CcEEEEEEcCC--ChHHhhHHHhCCCccccEEEEEeCC
Confidence 47899999999999999999882 2 333 68999999887 444433 7888999999999876
No 254
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.16 E-value=1.7e-05 Score=60.32 Aligned_cols=84 Identities=12% Similarity=0.175 Sum_probs=62.9
Q ss_pred CCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---------------------cchhhhhhCCcccc
Q psy14086 97 LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---------------------QHRSICQSFDIKSY 154 (324)
Q Consensus 97 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---------------------~~~~~~~~~~i~~~ 154 (324)
.++++|.|| +.||+.|....+.+.++..+++.+ ++.++.|..+ ....+++.||+...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL-GAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 567888999 589999999999999999988642 4666655443 12457777888877
Q ss_pred ---------ceEEEEeC-CeEeeeecCCCCHHHHHHH
Q psy14086 155 ---------PTLLWIES-GKKLDKFQGSRTLETLVNY 181 (324)
Q Consensus 155 ---------P~~~~~~~-g~~~~~~~g~~~~~~i~~f 181 (324)
|+.+++++ |+....+.|....+++.+-
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHHH
Confidence 89888875 7777778888766666553
No 255
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.13 E-value=3.9e-05 Score=63.25 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=70.7
Q ss_pred CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc---------chhhhhhCCccccceEEEEeCC--eE
Q psy14086 97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ---------HRSICQSFDIKSYPTLLWIESG--KK 165 (324)
Q Consensus 97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~---------~~~~~~~~~i~~~P~~~~~~~g--~~ 165 (324)
+.--+++||.+.|++|.++.|.++.++++++= .+..+.+|..- +...++++||..+|++++...+ +.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 33459999999999999999999999999965 56667777532 2446789999999999999774 33
Q ss_pred eeeecCCCCHHHHHHHHHhhhCC
Q psy14086 166 LDKFQGSRTLETLVNYVSKMKGP 188 (324)
Q Consensus 166 ~~~~~g~~~~~~i~~fi~~~~~~ 188 (324)
...-.|..+.++|.+=|.....+
T Consensus 221 ~pv~~G~iS~deL~~Ri~~v~t~ 243 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLNVSTD 243 (248)
T ss_pred EEEeeccCCHHHHHHHHHHHHhc
Confidence 34456889999998887766553
No 256
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.12 E-value=0.00012 Score=52.50 Aligned_cols=105 Identities=19% Similarity=0.388 Sum_probs=75.4
Q ss_pred CCceEcChhhHHHHhcCCC-EEEEEeCCCCHhHhhHHHHHHHHH-HhcCCCCCeEEEEeccc-----cchhhhhhCCcc-
Q psy14086 81 EGLVELTEESFEKYVSLGN-HFVKFYAPWCGHCQSLAPVWQELA-SHFKTEEDVSIAKIDCT-----QHRSICQSFDIK- 152 (324)
Q Consensus 81 ~~~~~l~~~~f~~~~~~~~-~~v~f~~~~c~~c~~~~~~~~~la-~~~~~~~~i~~~~vd~~-----~~~~~~~~~~i~- 152 (324)
.+...|++-+|++.+.+-. ++|-|-... +.-.-+.+|.++| +.......+.++.|-+. ++.+++++|+|.
T Consensus 4 ~G~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 4 KGCVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TTSEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred CceeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 3678899999999996665 578886543 2233466888888 55544457888888764 568999999995
Q ss_pred -ccceEEEEeC-CeEeeee--cCCCCHHHHHHHHHhhhC
Q psy14086 153 -SYPTLLWIES-GKKLDKF--QGSRTLETLVNYVSKMKG 187 (324)
Q Consensus 153 -~~P~~~~~~~-g~~~~~~--~g~~~~~~i~~fi~~~~~ 187 (324)
.+|.+++|.. .+...+| .|..+.++|..|+.+..+
T Consensus 82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 6899999985 4566678 788999999999998754
No 257
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.11 E-value=2e-05 Score=57.08 Aligned_cols=98 Identities=10% Similarity=0.088 Sum_probs=67.9
Q ss_pred EeccccccccccCCcEEEEEe----CCCChhhhhhhHhHHHHHHHhhc-CCCCeEEEEEecCCccchhhhhhcCCCc---
Q psy14086 213 SLTSENFNDVIKSGTVFIKFF----APWCGHCKRLAPTWEELGTKLLD-NKHGIVIAKVDCTQELSKDLCNQEGVDG--- 284 (324)
Q Consensus 213 ~l~~~~~~~~~~~~~~~v~f~----~~~c~~C~~~~~~~~~~a~~~~~-~~~~~~~~~id~~~~~~~~~~~~~~i~~--- 284 (324)
.++.++..... ..+.++.|+ +..-..-......+.++|++ ++ + ++.|+.+|.+. .....+.||+++
T Consensus 3 ~~~~en~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~-fk~g--ki~Fv~~D~~~--~~~~l~~fgl~~~~~ 76 (111)
T cd03073 3 HRTKDNRAQFT-KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKD-FPDR--KLNFAVADKED--FSHELEEFGLDFSGG 76 (111)
T ss_pred eeccchHHHhc-cCCeEEEEEeccccCChhHHHHHHHHHHHHHHH-CcCC--eEEEEEEcHHH--HHHHHHHcCCCcccC
Confidence 45556655554 333344433 22323445688999999965 55 4 69999999887 666788999974
Q ss_pred -cceEEEEecCeeeeeecCCC-CHHHHHHHHHhh
Q psy14086 285 -FPSIYVYKNGVRTAEYNGSR-DLEELYQFILKH 316 (324)
Q Consensus 285 -~P~l~~~~~g~~~~~~~g~~-~~~~l~~fi~~~ 316 (324)
.|+++++........+.+.. +.+.|.+|+++.
T Consensus 77 ~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 77 EKPVVAIRTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CCCEEEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 99999986432332357778 999999999875
No 258
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=4.1e-05 Score=56.99 Aligned_cols=86 Identities=15% Similarity=0.285 Sum_probs=63.7
Q ss_pred CcEEEEEeCCCChhhhhhhHhHH---HHHHHhhcCCCCeEEEEEecCCc--------------cchhhhhhcCCCccceE
Q psy14086 226 GTVFIKFFAPWCGHCKRLAPTWE---ELGTKLLDNKHGIVIAKVDCTQE--------------LSKDLCNQEGVDGFPSI 288 (324)
Q Consensus 226 ~~~~v~f~~~~c~~C~~~~~~~~---~~a~~~~~~~~~~~~~~id~~~~--------------~~~~~~~~~~i~~~P~l 288 (324)
+-.+++|.++.|..|..+...+. ++- +++.. ++.+..++++.. ...++++.|++++.|++
T Consensus 43 Kylllmfes~~C~yC~~~KKd~~~~krlr-Eylk~--hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf 119 (182)
T COG2143 43 KYLLLMFESNGCSYCERFKKDLKNVKRLR-EYLKE--HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF 119 (182)
T ss_pred cEEEEEEcCCCChHHHHHHHhhcchHHHH-HHHhh--CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence 45899999999999999876653 232 33433 577777776540 12489999999999999
Q ss_pred EEEe-cCeeeeeecCCCCHHHHHHHHH
Q psy14086 289 YVYK-NGVRTAEYNGSRDLEELYQFIL 314 (324)
Q Consensus 289 ~~~~-~g~~~~~~~g~~~~~~l~~fi~ 314 (324)
++|. .|+.+....|....+++...++
T Consensus 120 vFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 120 VFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred EEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 9995 6788777889888887665443
No 259
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.09 E-value=2.3e-05 Score=56.76 Aligned_cols=102 Identities=18% Similarity=0.172 Sum_probs=73.9
Q ss_pred eeEeccccccccccCC-cEEEEEeCCCChhhhhhhHhHHHHHHHh--hcCCCCeEEEEEecCCccchhhhhhcCCCc--c
Q psy14086 211 VVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKL--LDNKHGIVIAKVDCTQELSKDLCNQEGVDG--F 285 (324)
Q Consensus 211 v~~l~~~~~~~~~~~~-~~~v~f~~~~c~~C~~~~~~~~~~a~~~--~~~~~~~~~~~id~~~~~~~~~~~~~~i~~--~ 285 (324)
|++++.++...+...+ +..+.|+.+. .-......+.++|+++ +++ ++.|+.+|.+. .....+.||++. +
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~~--~~~~~~~~~~~vAk~~~~~kg--ki~Fv~~d~~~--~~~~~~~fgl~~~~~ 74 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDKD--DLESLKEFKQAVARQLISEKG--AINFLTADGDK--FRHPLLHLGKTPADL 74 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecch--HHHHHHHHHHHHHHHHHhcCc--eEEEEEEechH--hhhHHHHcCCCHhHC
Confidence 4567788887777654 4544555332 3356888899999551 333 69999999988 666889999986 9
Q ss_pred ceEEEEecCe--eeeeecCCCCHHHHHHHHHhhcc
Q psy14086 286 PSIYVYKNGV--RTAEYNGSRDLEELYQFILKHKV 318 (324)
Q Consensus 286 P~l~~~~~g~--~~~~~~g~~~~~~l~~fi~~~~~ 318 (324)
|.+++..... ++..+.+..+.+.|.+|+.+.+.
T Consensus 75 P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 75 PVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred CEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 9999886432 33226688999999999998764
No 260
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.08 E-value=3.7e-05 Score=57.02 Aligned_cols=75 Identities=21% Similarity=0.544 Sum_probs=56.3
Q ss_pred ccccccCCcEEEEEeCC-CChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-------------------cchhhhh
Q psy14086 219 FNDVIKSGTVFIKFFAP-WCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-------------------LSKDLCN 278 (324)
Q Consensus 219 ~~~~~~~~~~~v~f~~~-~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-------------------~~~~~~~ 278 (324)
+.++ .+++++|.||+. ||+.|....+.+.++..++... ++.++.+..+.. ....+.+
T Consensus 20 l~~l-~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~--~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 96 (124)
T PF00578_consen 20 LSDL-KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK--GVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAK 96 (124)
T ss_dssp GGGG-TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHH
T ss_pred HHHH-CCCcEEEEEeCccCccccccchhHHHHHhhhhccc--eEEeeecccccccchhhhhhhhccccccccCcchHHHH
Confidence 4444 567899999999 9999999999999999665443 688888887651 1236667
Q ss_pred hcCCC------ccceEEEEecCee
Q psy14086 279 QEGVD------GFPSIYVYKNGVR 296 (324)
Q Consensus 279 ~~~i~------~~P~l~~~~~g~~ 296 (324)
.|++. .+|+++++..++.
T Consensus 97 ~~~~~~~~~~~~~p~~~lid~~g~ 120 (124)
T PF00578_consen 97 AFGIEDEKDTLALPAVFLIDPDGK 120 (124)
T ss_dssp HTTCEETTTSEESEEEEEEETTSB
T ss_pred HcCCccccCCceEeEEEEECCCCE
Confidence 78887 8888888864433
No 261
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.06 E-value=3.8e-05 Score=57.12 Aligned_cols=71 Identities=20% Similarity=0.529 Sum_probs=45.7
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhC---CccccceEEEEeC-CeEeeee
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSF---DIKSYPTLLWIES-GKKLDKF 169 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~---~i~~~P~~~~~~~-g~~~~~~ 169 (324)
..+..++.|..+||+.|.+..|.+.++++... ++.+-.+-.+++..+...| |.+++|++++++. |+...++
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p---~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~w 114 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANP---NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRW 114 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T---TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEE
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC---CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEE
Confidence 33345888999999999999999999999864 3666655556677766655 6678999999976 5555544
No 262
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.05 E-value=4.5e-05 Score=52.51 Aligned_cols=77 Identities=18% Similarity=0.336 Sum_probs=56.4
Q ss_pred EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc----hhhhhhCC--ccccceEEEEeCCeEeeeecCCC
Q psy14086 100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH----RSICQSFD--IKSYPTLLWIESGKKLDKFQGSR 173 (324)
Q Consensus 100 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~----~~~~~~~~--i~~~P~~~~~~~g~~~~~~~g~~ 173 (324)
.+++|+.+||++|+.....|+++..+++ .+.+..+|.+.+ ..+.+..+ ...+|++++ +|+.+ |
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~---~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~i----g-- 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD---DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHI----G-- 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc---CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEE----c--
Confidence 3688999999999999999999998764 477777777654 24555455 478998764 56443 2
Q ss_pred CHHHHHHHHHhhhC
Q psy14086 174 TLETLVNYVSKMKG 187 (324)
Q Consensus 174 ~~~~i~~fi~~~~~ 187 (324)
..++|.++++..++
T Consensus 71 g~~~~~~~~~~~~~ 84 (85)
T PRK11200 71 GCTDFEAYVKENLG 84 (85)
T ss_pred CHHHHHHHHHHhcc
Confidence 45788888877653
No 263
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.05 E-value=4e-05 Score=55.89 Aligned_cols=90 Identities=7% Similarity=0.056 Sum_probs=66.9
Q ss_pred CCcEEEEEeCC----CChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEe--cC--ee
Q psy14086 225 SGTVFIKFFAP----WCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK--NG--VR 296 (324)
Q Consensus 225 ~~~~~v~f~~~----~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~--~g--~~ 296 (324)
.+.++|++|++ ||..|+..... .++. ++.+. ++.+...|++..+..+++..++++++|+++++. ++ ..
T Consensus 17 ~K~llVylhs~~~~~~~~fc~~~l~~-~~v~-~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~v 92 (116)
T cd02991 17 LRFLLVYLHGDDHQDTDEFCRNTLCA-PEVI-EYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTI 92 (116)
T ss_pred CCEEEEEEeCCCCccHHHHHHHHcCC-HHHH-HHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEE
Confidence 35799999999 88888764321 2333 33433 677888898876567888999999999998882 33 23
Q ss_pred eeeecCCCCHHHHHHHHHhhcc
Q psy14086 297 TAEYNGSRDLEELYQFILKHKV 318 (324)
Q Consensus 297 ~~~~~g~~~~~~l~~fi~~~~~ 318 (324)
+.+..|..+.++|...|.....
T Consensus 93 v~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 93 VGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEEeCCCCHHHHHHHHHHHHh
Confidence 6678999999999999987654
No 264
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.02 E-value=3.3e-05 Score=57.27 Aligned_cols=70 Identities=23% Similarity=0.520 Sum_probs=55.1
Q ss_pred cCCCEEEEEeCC-CCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc---------------------hhhhhhCCcc-
Q psy14086 96 SLGNHFVKFYAP-WCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH---------------------RSICQSFDIK- 152 (324)
Q Consensus 96 ~~~~~~v~f~~~-~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~---------------------~~~~~~~~i~- 152 (324)
.+++.+|.||+. ||+.|....+.+.++..+++.. ++.++.|..+.. ..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~-~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 102 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK-GVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIED 102 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccc-eEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcc
Confidence 456789999999 9999999999999999998853 577777665422 4677778888
Q ss_pred -----ccceEEEEeCCeEe
Q psy14086 153 -----SYPTLLWIESGKKL 166 (324)
Q Consensus 153 -----~~P~~~~~~~g~~~ 166 (324)
..|++++++++..+
T Consensus 103 ~~~~~~~p~~~lid~~g~I 121 (124)
T PF00578_consen 103 EKDTLALPAVFLIDPDGKI 121 (124)
T ss_dssp TTTSEESEEEEEEETTSBE
T ss_pred ccCCceEeEEEEECCCCEE
Confidence 78999888875443
No 265
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.02 E-value=6.8e-05 Score=61.85 Aligned_cols=94 Identities=13% Similarity=0.119 Sum_probs=66.5
Q ss_pred CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-------cchhhhhhcCCCccceEEEEec-C-e
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-------LSKDLCNQEGVDGFPSIYVYKN-G-V 295 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-------~~~~~~~~~~i~~~P~l~~~~~-g-~ 295 (324)
++--+++||.+.|+.|..+.|+++.++.+ +.- .+..+.+|.... .+....++++|+.+|+++++.. + +
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~-yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~ 219 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDT-YGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGS 219 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHH-hCC--eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCc
Confidence 34679999999999999999999999965 322 344455554220 0223456899999999999853 3 3
Q ss_pred eeeeecCCCCHHHHHHHHHhhcccCC
Q psy14086 296 RTAEYNGSRDLEELYQFILKHKVESH 321 (324)
Q Consensus 296 ~~~~~~g~~~~~~l~~fi~~~~~~~~ 321 (324)
...+-.|..+.++|.+-|.......+
T Consensus 220 ~~pv~~G~iS~deL~~Ri~~v~t~~~ 245 (248)
T PRK13703 220 VRPLSYGFITQDDLAKRFLNVSTDFK 245 (248)
T ss_pred EEEEeeccCCHHHHHHHHHHHHhccC
Confidence 33344688999999888876655444
No 266
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.00 E-value=6e-05 Score=54.99 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=65.2
Q ss_pred CCCEEEEEeCC----CCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc--cchhhhhhCCccccceEEEEe---C-CeEe
Q psy14086 97 LGNHFVKFYAP----WCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT--QHRSICQSFDIKSYPTLLWIE---S-GKKL 166 (324)
Q Consensus 97 ~~~~~v~f~~~----~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~P~~~~~~---~-g~~~ 166 (324)
.+.++|+++++ ||..|+... .=.++.+-+.. ++.+...|+. +...++..++++++|++.++. + .+.+
T Consensus 17 ~K~llVylhs~~~~~~~~fc~~~l-~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv 93 (116)
T cd02991 17 LRFLLVYLHGDDHQDTDEFCRNTL-CAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIV 93 (116)
T ss_pred CCEEEEEEeCCCCccHHHHHHHHc-CCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEE
Confidence 44578999999 888886653 11233333333 6888888876 446799999999999998883 2 2346
Q ss_pred eeecCCCCHHHHHHHHHhhhC
Q psy14086 167 DKFQGSRTLETLVNYVSKMKG 187 (324)
Q Consensus 167 ~~~~g~~~~~~i~~fi~~~~~ 187 (324)
.+..|..+++++...++....
T Consensus 94 ~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 94 GRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEeCCCCHHHHHHHHHHHHh
Confidence 678999999999999987764
No 267
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.00 E-value=2.5e-05 Score=58.14 Aligned_cols=82 Identities=20% Similarity=0.439 Sum_probs=45.6
Q ss_pred CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhh---cCCCccceEEEEe-cCeeeeee
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQ---EGVDGFPSIYVYK-NGVRTAEY 300 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~---~~i~~~P~l~~~~-~g~~~~~~ 300 (324)
.+..++.|..+|||+|....|.+.+++.. . . ++.+-.+.-+. +.++... .|...+|+++++. +|+....+
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~-~-p--~i~~~~i~rd~--~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~w 114 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEA-N-P--NIEVRIILRDE--NKELMDQYLTNGGRSIPTFIFLDKDGKELGRW 114 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH---T--TEEEEEE-HHH--HHHHTTTTTT-SS--SSEEEEE-TT--EEEEE
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHh-C-C--CCeEEEEEecC--ChhHHHHHHhCCCeecCEEEEEcCCCCEeEEE
Confidence 34578889999999999999999999943 2 2 45555555444 5555544 4567899999995 56666555
Q ss_pred cCCCCHHHHHHHHH
Q psy14086 301 NGSRDLEELYQFIL 314 (324)
Q Consensus 301 ~g~~~~~~l~~fi~ 314 (324)
|++ +..+.+++.
T Consensus 115 -ger-P~~~~~~~~ 126 (129)
T PF14595_consen 115 -GER-PKEVQELVD 126 (129)
T ss_dssp -ESS--HHHH----
T ss_pred -cCC-CHHHhhccc
Confidence 443 455555554
No 268
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.99 E-value=4.4e-05 Score=55.46 Aligned_cols=66 Identities=20% Similarity=0.475 Sum_probs=44.8
Q ss_pred CCEEEEEeC-------CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch-------hhhh--hCCccccceEEEEe
Q psy14086 98 GNHFVKFYA-------PWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR-------SICQ--SFDIKSYPTLLWIE 161 (324)
Q Consensus 98 ~~~~v~f~~-------~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~-------~~~~--~~~i~~~P~~~~~~ 161 (324)
++++|+|++ +||+.|....|.++++-..... +..|+.+.+...+ .+-. .++|+++||++-+.
T Consensus 20 ~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~ 97 (119)
T PF06110_consen 20 KPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWE 97 (119)
T ss_dssp SEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECT
T ss_pred CeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEEC
Confidence 467888885 6999999999999998888665 6788877764221 2333 58999999999987
Q ss_pred CCeE
Q psy14086 162 SGKK 165 (324)
Q Consensus 162 ~g~~ 165 (324)
.++.
T Consensus 98 ~~~r 101 (119)
T PF06110_consen 98 TGER 101 (119)
T ss_dssp SS-E
T ss_pred CCCc
Confidence 7633
No 269
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.99 E-value=8.3e-05 Score=61.73 Aligned_cols=91 Identities=16% Similarity=0.264 Sum_probs=66.3
Q ss_pred CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc---------cchhhhhhcCCCccceEEEEe-cC
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---------LSKDLCNQEGVDGFPSIYVYK-NG 294 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~---------~~~~~~~~~~i~~~P~l~~~~-~g 294 (324)
++--+++||.+.|+.|..+.|+++.++.++ ++.+..|+.+.. .+...+++++++.+|++++.. ++
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~y-----gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t 224 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEY-----GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKS 224 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHh-----CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCC
Confidence 346899999999999999999999999663 344444444431 124567899999999998885 33
Q ss_pred ee-eeeecCCCCHHHHHHHHHhhcccC
Q psy14086 295 VR-TAEYNGSRDLEELYQFILKHKVES 320 (324)
Q Consensus 295 ~~-~~~~~g~~~~~~l~~fi~~~~~~~ 320 (324)
+. ..+=.|..+.++|.+-|.......
T Consensus 225 ~~~~pv~~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 225 QKMSPLAYGFISQDELKERILNVLTQF 251 (256)
T ss_pred CcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 33 334458899999988887665543
No 270
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.99 E-value=8.8e-05 Score=59.13 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=61.3
Q ss_pred CCc-EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---cc--c-h---hh-hhh--------------
Q psy14086 225 SGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---EL--S-K---DL-CNQ-------------- 279 (324)
Q Consensus 225 ~~~-~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---~~--~-~---~~-~~~-------------- 279 (324)
+++ +++.+|+.||++|+...|.++++.+++... ++.+..++++. .+ . . .+ .++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~--gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~ 117 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ--GLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVN 117 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC--CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecC
Confidence 454 456679999999999999999999775333 57777776431 00 0 0 00 111
Q ss_pred ----------------------cCCCccce---EEEE-ecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086 280 ----------------------EGVDGFPS---IYVY-KNGVRTAEYNGSRDLEELYQFILKHKV 318 (324)
Q Consensus 280 ----------------------~~i~~~P~---l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~ 318 (324)
+++.++|+ .+++ ++|+.+..+.|..+.+.+.+.|.+.++
T Consensus 118 g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 118 GENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 13446784 3444 678888888899888888888887654
No 271
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.98 E-value=7.4e-05 Score=57.34 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=36.3
Q ss_pred HHhcCCCEEEEE-eCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc
Q psy14086 93 KYVSLGNHFVKF-YAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH 142 (324)
Q Consensus 93 ~~~~~~~~~v~f-~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~ 142 (324)
++..+++++|.| ++.||+.|+...+.+.++..++... .+.++.|..+..
T Consensus 19 ~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~-~v~vv~V~~~~~ 68 (149)
T cd02970 19 ALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL-GVELVAVGPESP 68 (149)
T ss_pred HHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc-CeEEEEEeCCCH
Confidence 334445665555 5999999999999999999999642 577787776533
No 272
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.97 E-value=3.5e-05 Score=55.97 Aligned_cols=83 Identities=17% Similarity=0.352 Sum_probs=49.4
Q ss_pred CcEEEEEeC-------CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-----ccchhhhh--hcCCCccceEEEE
Q psy14086 226 GTVFIKFFA-------PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-----ELSKDLCN--QEGVDGFPSIYVY 291 (324)
Q Consensus 226 ~~~~v~f~~-------~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-----~~~~~~~~--~~~i~~~P~l~~~ 291 (324)
++++|+|++ +||++|+...|.++++... ... +..++.+.+.. ..+..+.. .++++++|||+-+
T Consensus 20 ~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~-~~~--~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~ 96 (119)
T PF06110_consen 20 KPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKK-APE--NARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRW 96 (119)
T ss_dssp SEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH--ST--TEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEEC
T ss_pred CeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHh-CCC--CceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEE
Confidence 578888876 5999999999999987744 333 56777776643 11234444 5899999999988
Q ss_pred ecCeeeeeecCC--CCHHHHHHHHH
Q psy14086 292 KNGVRTAEYNGS--RDLEELYQFIL 314 (324)
Q Consensus 292 ~~g~~~~~~~g~--~~~~~l~~fi~ 314 (324)
..+++ +.+. .+.+-|..|+.
T Consensus 97 ~~~~r---L~e~e~~~~~lv~~~~e 118 (119)
T PF06110_consen 97 ETGER---LVEEECLNEDLVEMFFE 118 (119)
T ss_dssp TSS-E---EEHHHHH-HHHHHHHHH
T ss_pred CCCCc---cchhhhccHHHHHHHhc
Confidence 77644 2322 34455555543
No 273
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.96 E-value=4e-05 Score=54.30 Aligned_cols=91 Identities=19% Similarity=0.394 Sum_probs=71.4
Q ss_pred CceEcChhhHHHHhcCCCEEEEEeCCCCH---hHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086 82 GLVELTEESFEKYVSLGNHFVKFYAPWCG---HCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL 158 (324)
Q Consensus 82 ~~~~l~~~~f~~~~~~~~~~v~f~~~~c~---~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~ 158 (324)
+...++.++++.++......|.|++..|. .+....-++-++.+.|.+ .+..+.+.-..+..+..+||+..+|+++
T Consensus 10 g~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~--~~~~avv~~~~e~~L~~r~gv~~~PaLv 87 (107)
T PF07449_consen 10 GWPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPG--RFRGAVVARAAERALAARFGVRRWPALV 87 (107)
T ss_dssp TEEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTT--SEEEEEEEHHHHHHHHHHHT-TSSSEEE
T ss_pred CCeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhC--ccceEEECchhHHHHHHHhCCccCCeEE
Confidence 67888999999999777767777776654 445555688889999988 7888887767888999999999999999
Q ss_pred EEeCCeEeeeecCCCC
Q psy14086 159 WIESGKKLDKFQGSRT 174 (324)
Q Consensus 159 ~~~~g~~~~~~~g~~~ 174 (324)
++++|+......|-++
T Consensus 88 f~R~g~~lG~i~gi~d 103 (107)
T PF07449_consen 88 FFRDGRYLGAIEGIRD 103 (107)
T ss_dssp EEETTEEEEEEESSST
T ss_pred EEECCEEEEEecCeec
Confidence 9999988776666554
No 274
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.96 E-value=7.9e-05 Score=58.90 Aligned_cols=89 Identities=10% Similarity=0.199 Sum_probs=62.8
Q ss_pred CCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc----------------------------chhhhh
Q psy14086 97 LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----------------------------HRSICQ 147 (324)
Q Consensus 97 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~----------------------------~~~~~~ 147 (324)
.+.++|.|| +.||+.|....+.+++++++|... ++.++.|..+. ...+++
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL-NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 456788999 899999999999999999999752 45555554331 134556
Q ss_pred hCCcc------ccceEEEEeC-CeEeeeecC----CCCHHHHHHHHHhhh
Q psy14086 148 SFDIK------SYPTLLWIES-GKKLDKFQG----SRTLETLVNYVSKMK 186 (324)
Q Consensus 148 ~~~i~------~~P~~~~~~~-g~~~~~~~g----~~~~~~i~~fi~~~~ 186 (324)
.||+. ..|+.+++++ |.....+.+ ..+.++|.+.|+...
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~ 157 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQ 157 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 67775 4678888876 655555533 246778888887653
No 275
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.95 E-value=8.4e-05 Score=57.02 Aligned_cols=47 Identities=19% Similarity=0.312 Sum_probs=34.3
Q ss_pred cccCCcEEEEE-eCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC
Q psy14086 222 VIKSGTVFIKF-FAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270 (324)
Q Consensus 222 ~~~~~~~~v~f-~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~ 270 (324)
...+++++|.| ++.||+.|+...+.+.++..++... ++.++.|+.+.
T Consensus 20 ~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~--~v~vv~V~~~~ 67 (149)
T cd02970 20 LLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL--GVELVAVGPES 67 (149)
T ss_pred HhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc--CeEEEEEeCCC
Confidence 33345555555 5899999999999999999665433 57777777665
No 276
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.95 E-value=0.00014 Score=57.55 Aligned_cols=91 Identities=12% Similarity=0.164 Sum_probs=62.1
Q ss_pred cCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------------cchhh
Q psy14086 224 KSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------------LSKDL 276 (324)
Q Consensus 224 ~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------------~~~~~ 276 (324)
.++.++|.|| +.||+.|....+.+++++.++... ++.+..|+.+.. ....+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~--~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 105 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL--NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKI 105 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhH
Confidence 3568899999 799999999999999998775443 455555554431 12245
Q ss_pred hhhcCCC------ccceEEEEe-cCeeeeeecC----CCCHHHHHHHHHhh
Q psy14086 277 CNQEGVD------GFPSIYVYK-NGVRTAEYNG----SRDLEELYQFILKH 316 (324)
Q Consensus 277 ~~~~~i~------~~P~l~~~~-~g~~~~~~~g----~~~~~~l~~fi~~~ 316 (324)
.+.|++. ..|+.+++. +|+....+.+ ..+.+++.+.|+..
T Consensus 106 ~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 106 SRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 5667775 467888885 6766555533 24677888888654
No 277
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.94 E-value=0.00014 Score=51.39 Aligned_cols=87 Identities=15% Similarity=0.302 Sum_probs=66.8
Q ss_pred hhHHHHh-cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCC-eEe
Q psy14086 89 ESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG-KKL 166 (324)
Q Consensus 89 ~~f~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g-~~~ 166 (324)
+.++.++ ....++|.|+..++.+ ....|.++|..++. .+.|+.+. +..+++.+++. .|++++|++. ...
T Consensus 8 ~~l~~~~~~~~~~vvg~f~~~~~~---~~~~f~~~A~~~r~--~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~~~~ 78 (97)
T cd02981 8 EELEKFLDKDDVVVVGFFKDEESE---EYKTFEKVAESLRD--DYGFGHTS---DKEVAKKLKVK-PGSVVLFKPFEEEP 78 (97)
T ss_pred HHHHHHhccCCeEEEEEECCCCcH---HHHHHHHHHHhccc--CCeEEEEC---hHHHHHHcCCC-CCceEEeCCcccCC
Confidence 4455555 3446788999998773 67899999999987 68898765 45677777775 5889999773 455
Q ss_pred eeecCCCCHHHHHHHHHh
Q psy14086 167 DKFQGSRTLETLVNYVSK 184 (324)
Q Consensus 167 ~~~~g~~~~~~i~~fi~~ 184 (324)
..|.|..+.++|.+||..
T Consensus 79 ~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 79 VEYDGEFTEESLVEFIKD 96 (97)
T ss_pred ccCCCCCCHHHHHHHHHh
Confidence 569999999999999974
No 278
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.94 E-value=2.3e-05 Score=53.77 Aligned_cols=58 Identities=17% Similarity=0.382 Sum_probs=43.4
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch-----hhhhhCCccccceEEEEeCCe
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR-----SICQSFDIKSYPTLLWIESGK 164 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~-----~~~~~~~i~~~P~~~~~~~g~ 164 (324)
++.|+++||++|..+.+.+.++. ... .+.+..+|.+.+. .+.+.+|+.++|++++ +|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~--~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP--AYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC--CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence 47899999999999999999977 322 4777777765432 3666779999998743 453
No 279
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.92 E-value=8.5e-05 Score=52.50 Aligned_cols=85 Identities=20% Similarity=0.299 Sum_probs=63.3
Q ss_pred ccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecC-ee
Q psy14086 219 FNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNG-VR 296 (324)
Q Consensus 219 ~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g-~~ 296 (324)
++.++.. +.++|-|+..+|+ .....|.++|.. ++. .+.|+.+. +.++.+++++. -|++++|+.. ..
T Consensus 10 l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~-~r~--~~~F~~~~-----~~~~~~~~~~~-~~~i~l~~~~~~~ 77 (97)
T cd02981 10 LEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAES-LRD--DYGFGHTS-----DKEVAKKLKVK-PGSVVLFKPFEEE 77 (97)
T ss_pred HHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHh-ccc--CCeEEEEC-----hHHHHHHcCCC-CCceEEeCCcccC
Confidence 5555544 5688889988877 467888899955 544 47888766 46777777775 5899999764 44
Q ss_pred eeeecCCCCHHHHHHHHHh
Q psy14086 297 TAEYNGSRDLEELYQFILK 315 (324)
Q Consensus 297 ~~~~~g~~~~~~l~~fi~~ 315 (324)
...|.|..+.+.|.+||..
T Consensus 78 ~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 78 PVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred CccCCCCCCHHHHHHHHHh
Confidence 5679999889999999975
No 280
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.87 E-value=0.00015 Score=56.88 Aligned_cols=84 Identities=7% Similarity=0.162 Sum_probs=55.8
Q ss_pred cCCCEEEEEeCCC-CHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-----------------------chhhhhhCCc
Q psy14086 96 SLGNHFVKFYAPW-CGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-----------------------HRSICQSFDI 151 (324)
Q Consensus 96 ~~~~~~v~f~~~~-c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-----------------------~~~~~~~~~i 151 (324)
..+.++|.||+.| |++|....+.++++++++. ++.++.|..+. ...+++.||+
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv 119 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGV 119 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCC
Confidence 3557899999999 9999999999999999984 35565554431 1256667777
Q ss_pred cccc---------eEEEEeC-CeEeeeecC-----CCCHHHHHHHH
Q psy14086 152 KSYP---------TLLWIES-GKKLDKFQG-----SRTLETLVNYV 182 (324)
Q Consensus 152 ~~~P---------~~~~~~~-g~~~~~~~g-----~~~~~~i~~fi 182 (324)
...| +.++++. |.....+.+ ....+.+.+++
T Consensus 120 ~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l 165 (167)
T PRK00522 120 AIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAAL 165 (167)
T ss_pred eecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHh
Confidence 6555 6677764 554443322 23455665555
No 281
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.86 E-value=0.00036 Score=53.96 Aligned_cols=83 Identities=14% Similarity=0.236 Sum_probs=56.4
Q ss_pred cCCcEEEEEeCC-CChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-------------------ccchhhhhhcCCC
Q psy14086 224 KSGTVFIKFFAP-WCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-------------------ELSKDLCNQEGVD 283 (324)
Q Consensus 224 ~~~~~~v~f~~~-~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-------------------~~~~~~~~~~~i~ 283 (324)
.+++++|.||+. ||+.|....+.+.++..++... ++.++.|+.+. +....+.+.|++.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~--~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 106 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA--GVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVW 106 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCC
Confidence 467899999976 6778999999998888664433 46666666544 1123566777775
Q ss_pred cc------------ceEEEE-ecCeeeeeecCCCCHHH
Q psy14086 284 GF------------PSIYVY-KNGVRTAEYNGSRDLEE 308 (324)
Q Consensus 284 ~~------------P~l~~~-~~g~~~~~~~g~~~~~~ 308 (324)
.. |+.+++ ++|+.+..|.|....+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~ 144 (154)
T PRK09437 107 GEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNH 144 (154)
T ss_pred cccccccccccCcceEEEEECCCCEEEEEEcCCCcchh
Confidence 43 566677 57888778887644444
No 282
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.85 E-value=0.00015 Score=49.86 Aligned_cols=79 Identities=22% Similarity=0.318 Sum_probs=56.0
Q ss_pred EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--cchhhhhhcC--CCccceEEEEecCeeeeeecCC
Q psy14086 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--LSKDLCNQEG--VDGFPSIYVYKNGVRTAEYNGS 303 (324)
Q Consensus 228 ~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~--i~~~P~l~~~~~g~~~~~~~g~ 303 (324)
-+++|+.+||+.|+.....|+++..+ + . ++.+..+|.+.. +..++.+..+ ...+|+++ .+|+.+ |
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~-~-~--~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~i----g- 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEE-R-D--DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHI----G- 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccc-c-c--CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEE----c-
Confidence 36789999999999999999999843 2 2 577888887761 1234554444 47899984 466543 3
Q ss_pred CCHHHHHHHHHhhcc
Q psy14086 304 RDLEELYQFILKHKV 318 (324)
Q Consensus 304 ~~~~~l~~fi~~~~~ 318 (324)
..++|.++++.+++
T Consensus 71 -g~~~~~~~~~~~~~ 84 (85)
T PRK11200 71 -GCTDFEAYVKENLG 84 (85)
T ss_pred -CHHHHHHHHHHhcc
Confidence 25888888887654
No 283
>KOG2603|consensus
Probab=97.85 E-value=0.00029 Score=58.81 Aligned_cols=108 Identities=15% Similarity=0.362 Sum_probs=83.1
Q ss_pred CCeeEeccccccccccCC----cEEEEEeCC----CChhhhhhhHhHHHHHHHhhcCC-----CCeEEEEEecCCccchh
Q psy14086 209 EPVVSLTSENFNDVIKSG----TVFIKFFAP----WCGHCKRLAPTWEELGTKLLDNK-----HGIVIAKVDCTQELSKD 275 (324)
Q Consensus 209 ~~v~~l~~~~~~~~~~~~----~~~v~f~~~----~c~~C~~~~~~~~~~a~~~~~~~-----~~~~~~~id~~~~~~~~ 275 (324)
..|..+++++|..++... -.+|+|.|. .|.-|+.....++-+|+.++... .++-|+.+|.++ .++
T Consensus 40 ~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e--~p~ 117 (331)
T KOG2603|consen 40 SGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE--SPQ 117 (331)
T ss_pred CCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc--cHH
Confidence 679999999999999653 267777764 49999999999999997654332 258899999999 899
Q ss_pred hhhhcCCCccceEEEEe--cCeee--eeecC---CCCHHHHHHHHHhhcc
Q psy14086 276 LCNQEGVDGFPSIYVYK--NGVRT--AEYNG---SRDLEELYQFILKHKV 318 (324)
Q Consensus 276 ~~~~~~i~~~P~l~~~~--~g~~~--~~~~g---~~~~~~l~~fi~~~~~ 318 (324)
+.+.++++++|++++|+ .|++. ..+.+ ....|.+.+|+.+..+
T Consensus 118 ~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 118 VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK 167 (331)
T ss_pred HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence 99999999999999993 23321 12222 1348999999988754
No 284
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.83 E-value=0.00021 Score=57.20 Aligned_cols=89 Identities=12% Similarity=0.111 Sum_probs=61.9
Q ss_pred cCCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-------------------------cchhhhhhC
Q psy14086 96 SLGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-------------------------QHRSICQSF 149 (324)
Q Consensus 96 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-------------------------~~~~~~~~~ 149 (324)
..++++|.|| +.||+.|....+.+.++..++... .+.++.|.++ ....+++.|
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~ 108 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL-GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNF 108 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHh
Confidence 3556789999 999999999999999999998643 3444443322 124677788
Q ss_pred Ccc------ccceEEEEeC-CeEeeeecC----CCCHHHHHHHHHhh
Q psy14086 150 DIK------SYPTLLWIES-GKKLDKFQG----SRTLETLVNYVSKM 185 (324)
Q Consensus 150 ~i~------~~P~~~~~~~-g~~~~~~~g----~~~~~~i~~fi~~~ 185 (324)
|+. ..|+.++++. |.....+.+ ....+++.+.|+..
T Consensus 109 gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 109 GVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred CCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 886 3588888875 655544422 25788888887544
No 285
>PRK15000 peroxidase; Provisional
Probab=97.80 E-value=0.00033 Score=56.61 Aligned_cols=93 Identities=12% Similarity=0.307 Sum_probs=65.1
Q ss_pred ccccCCcEEEEEeCC-CChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------------cc
Q psy14086 221 DVIKSGTVFIKFFAP-WCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------------LS 273 (324)
Q Consensus 221 ~~~~~~~~~v~f~~~-~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------------~~ 273 (324)
+...++.++|.||.. ||+.|....+.+.+++.++... ++.+..++++.. ..
T Consensus 30 ~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~--g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~ 107 (200)
T PRK15000 30 QHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR--GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVK 107 (200)
T ss_pred HHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCC
Confidence 333467899999995 8999999999999998775434 455665655531 12
Q ss_pred hhhhhhcCCC------ccceEEEEe-cCeeeeeecC----CCCHHHHHHHHHh
Q psy14086 274 KDLCNQEGVD------GFPSIYVYK-NGVRTAEYNG----SRDLEELYQFILK 315 (324)
Q Consensus 274 ~~~~~~~~i~------~~P~l~~~~-~g~~~~~~~g----~~~~~~l~~fi~~ 315 (324)
..+++.|++. .+|+.+++. +|+....+.| .++.+++.+.|+.
T Consensus 108 ~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 108 REIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred cHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 2555667876 689888885 7766554444 2688999998865
No 286
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.80 E-value=0.0002 Score=49.20 Aligned_cols=94 Identities=20% Similarity=0.411 Sum_probs=71.7
Q ss_pred hhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc--chhhhhhCCcc----ccc-eEEE
Q psy14086 88 EESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ--HRSICQSFDIK----SYP-TLLW 159 (324)
Q Consensus 88 ~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~--~~~~~~~~~i~----~~P-~~~~ 159 (324)
-.+|.+++.. +.+++.|..+- ..-......+.++|...+| .-.++.|||.. .+.+|+++.+. .-| .+.-
T Consensus 9 ~KdfKKLLRTr~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG--~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkH 85 (112)
T cd03067 9 HKDFKKLLRTRNNVLVLYSKSA-KSAEALLKLLSDVAQAVKG--QGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKH 85 (112)
T ss_pred hHHHHHHHhhcCcEEEEEecch-hhHHHHHHHHHHHHHHhcC--ceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhc
Confidence 3678887744 45667666554 3334456699999999999 67778888875 78999999998 445 4567
Q ss_pred EeCCeEeeeecCCCCHHHHHHHHHh
Q psy14086 160 IESGKKLDKFQGSRTLETLVNYVSK 184 (324)
Q Consensus 160 ~~~g~~~~~~~g~~~~~~i~~fi~~ 184 (324)
|++|.-...|.-..+...|+.|+++
T Consensus 86 YKdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 86 YKDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred ccCCCccccccchhhHHHHHHHhhC
Confidence 7888877788889999999999975
No 287
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.80 E-value=0.00035 Score=53.59 Aligned_cols=76 Identities=13% Similarity=0.282 Sum_probs=51.4
Q ss_pred CcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-------------------ccc--hhhhhhcCCC
Q psy14086 226 GTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-------------------ELS--KDLCNQEGVD 283 (324)
Q Consensus 226 ~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-------------------~~~--~~~~~~~~i~ 283 (324)
++++|.|| +.||+.|....|.+.++..++... ++.++.++.+. +.. ..+.+.|++.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~ 106 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAA--GAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVF 106 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC--CCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCc
Confidence 67777777 899999999999999998664333 56666666543 112 3456677776
Q ss_pred ----cc--ceEEEE-ecCeeeeeecCC
Q psy14086 284 ----GF--PSIYVY-KNGVRTAEYNGS 303 (324)
Q Consensus 284 ----~~--P~l~~~-~~g~~~~~~~g~ 303 (324)
+. |+.+++ ++|+....+.|.
T Consensus 107 ~~~~~~~~~~~~lid~~G~v~~~~~~~ 133 (149)
T cd03018 107 DEDLGVAERAVFVIDRDGIIRYAWVSD 133 (149)
T ss_pred cccCCCccceEEEECCCCEEEEEEecC
Confidence 23 366777 467766556554
No 288
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.79 E-value=5.1e-05 Score=52.00 Aligned_cols=72 Identities=19% Similarity=0.362 Sum_probs=48.1
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccch----hhhhhcCCCccceEEEEecCeeeeeecCCC
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK----DLCNQEGVDGFPSIYVYKNGVRTAEYNGSR 304 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~ 304 (324)
++.|+++||++|+.+.+.++++. ... .+.+..++.+.. .. .+.+.+++.++|++ |-+|+.+ |.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~---i~~--~~~~~~v~~~~~-~~~~~~~l~~~~g~~~vP~v--~i~g~~i----gg- 67 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN---VKP--AYEVVELDQLSN-GSEIQDYLEEITGQRTVPNI--FINGKFI----GG- 67 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC---CCC--CCEEEEeeCCCC-hHHHHHHHHHHhCCCCCCeE--EECCEEE----cC-
Confidence 47899999999999999998876 221 366777776541 11 25566788899998 4466433 22
Q ss_pred CHHHHHHHHH
Q psy14086 305 DLEELYQFIL 314 (324)
Q Consensus 305 ~~~~l~~fi~ 314 (324)
.+++.+...
T Consensus 68 -~~~~~~~~~ 76 (84)
T TIGR02180 68 -CSDLLALYK 76 (84)
T ss_pred -HHHHHHHHH
Confidence 355555544
No 289
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.77 E-value=0.00037 Score=55.77 Aligned_cols=90 Identities=21% Similarity=0.164 Sum_probs=60.6
Q ss_pred cCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-----------------------cchhhhhh
Q psy14086 224 KSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-----------------------LSKDLCNQ 279 (324)
Q Consensus 224 ~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-----------------------~~~~~~~~ 279 (324)
.+++++|.|| +.||+.|....+.+.++..++... ++.+..++.+.. ....+++.
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~--gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~ 107 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL--GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRN 107 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc--CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHH
Confidence 3568999999 999999999999999988665433 344444443320 12356677
Q ss_pred cCCC------ccceEEEE-ecCeeeeeecC----CCCHHHHHHHHHh
Q psy14086 280 EGVD------GFPSIYVY-KNGVRTAEYNG----SRDLEELYQFILK 315 (324)
Q Consensus 280 ~~i~------~~P~l~~~-~~g~~~~~~~g----~~~~~~l~~fi~~ 315 (324)
|++. ..|+.+++ ++|.....+.+ .+..+++.+.|+.
T Consensus 108 ~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 108 FGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred hCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 8875 35888888 47776544322 2577888887753
No 290
>PRK15000 peroxidase; Provisional
Probab=97.77 E-value=0.00025 Score=57.24 Aligned_cols=96 Identities=14% Similarity=0.292 Sum_probs=67.1
Q ss_pred hHHHHhcCCCEEEEEeCC-CCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc----------------------------
Q psy14086 90 SFEKYVSLGNHFVKFYAP-WCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---------------------------- 140 (324)
Q Consensus 90 ~f~~~~~~~~~~v~f~~~-~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---------------------------- 140 (324)
++.+....+.+++.||+. ||+.|....+.|.+++.+|+.. ++.++.+.++
T Consensus 27 ~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD 105 (200)
T PRK15000 27 NFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVAD 105 (200)
T ss_pred eHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEEC
Confidence 444444566778999994 8999999999999999999753 3555544443
Q ss_pred cchhhhhhCCcc------ccceEEEEeC-CeEeeeecC----CCCHHHHHHHHHhhh
Q psy14086 141 QHRSICQSFDIK------SYPTLLWIES-GKKLDKFQG----SRTLETLVNYVSKMK 186 (324)
Q Consensus 141 ~~~~~~~~~~i~------~~P~~~~~~~-g~~~~~~~g----~~~~~~i~~fi~~~~ 186 (324)
....+++.||+. ..|+.+++++ |.....+.+ .++.+++.+.++.+.
T Consensus 106 ~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~ 162 (200)
T PRK15000 106 VKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQ 162 (200)
T ss_pred CCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 123456667876 5899999985 655444443 368888888887643
No 291
>KOG3425|consensus
Probab=97.74 E-value=0.00012 Score=52.03 Aligned_cols=65 Identities=18% Similarity=0.464 Sum_probs=49.5
Q ss_pred CcEEEEEeC--------CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-----ccchhhhhhcCC-CccceEEEE
Q psy14086 226 GTVFIKFFA--------PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-----ELSKDLCNQEGV-DGFPSIYVY 291 (324)
Q Consensus 226 ~~~~v~f~~--------~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-----~~~~~~~~~~~i-~~~P~l~~~ 291 (324)
+.++|.|++ +||+.|.+..|.+.++-+ .... ++.|+.+++.. ..+..+....++ +++|||+=+
T Consensus 26 ~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk-~ap~--~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw 102 (128)
T KOG3425|consen 26 KTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALK-HAPE--DVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRW 102 (128)
T ss_pred ceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHH-hCCC--ceEEEEEEecCCCcccCCCCccccCCCceeecceeeEE
Confidence 458888876 699999999999999884 3444 68999988765 123456666777 899999877
Q ss_pred ec
Q psy14086 292 KN 293 (324)
Q Consensus 292 ~~ 293 (324)
+.
T Consensus 103 ~~ 104 (128)
T KOG3425|consen 103 KR 104 (128)
T ss_pred cC
Confidence 64
No 292
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.73 E-value=0.00037 Score=53.91 Aligned_cols=81 Identities=17% Similarity=0.222 Sum_probs=56.3
Q ss_pred cCCCEEEEEeCC-CCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc---------------------chhhhhhCCccc
Q psy14086 96 SLGNHFVKFYAP-WCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ---------------------HRSICQSFDIKS 153 (324)
Q Consensus 96 ~~~~~~v~f~~~-~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~---------------------~~~~~~~~~i~~ 153 (324)
..++++|.||+. ||+.|....+.+.++.++++++ ++.++.|..+. ...+.+.||+..
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~-~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 107 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA-GVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWG 107 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCc
Confidence 456789999975 6888999999999999988653 46666665532 245667777754
Q ss_pred c------------ceEEEEe-CCeEeeeecCCCCHHH
Q psy14086 154 Y------------PTLLWIE-SGKKLDKFQGSRTLET 177 (324)
Q Consensus 154 ~------------P~~~~~~-~g~~~~~~~g~~~~~~ 177 (324)
. |+.++++ +|.....|.|....+.
T Consensus 108 ~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~ 144 (154)
T PRK09437 108 EKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNH 144 (154)
T ss_pred ccccccccccCcceEEEEECCCCEEEEEEcCCCcchh
Confidence 3 5667776 4777777877654444
No 293
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.71 E-value=0.00016 Score=54.98 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=36.1
Q ss_pred cCCCEEEEEeCCCCHh-HhhHHHHHHHHHHhcCCCC--CeEEEEecc
Q psy14086 96 SLGNHFVKFYAPWCGH-CQSLAPVWQELASHFKTEE--DVSIAKIDC 139 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~-c~~~~~~~~~la~~~~~~~--~i~~~~vd~ 139 (324)
..+.++|.||++||++ |....+.++++..+++... ++.++.|..
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~ 67 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISV 67 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEE
Confidence 4567899999999998 9999999999999997642 477776654
No 294
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.69 E-value=0.00021 Score=50.68 Aligned_cols=92 Identities=18% Similarity=0.238 Sum_probs=64.4
Q ss_pred CCeeEeccccccccccCCcEEEEEeCCCChhhhh---hhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCcc
Q psy14086 209 EPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKR---LAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGF 285 (324)
Q Consensus 209 ~~v~~l~~~~~~~~~~~~~~~v~f~~~~c~~C~~---~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~ 285 (324)
.....++..+++.++......|.|.+..|..+.+ ..-++=++. +.+.. .+..+.+.-.. ...+..+|++..+
T Consensus 9 ~g~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~-~af~~--~~~~avv~~~~--e~~L~~r~gv~~~ 83 (107)
T PF07449_consen 9 HGWPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELV-KAFPG--RFRGAVVARAA--ERALAARFGVRRW 83 (107)
T ss_dssp -TEEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHH-CTSTT--SEEEEEEEHHH--HHHHHHHHT-TSS
T ss_pred cCCeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHH-HhhhC--ccceEEECchh--HHHHHHHhCCccC
Confidence 3578888999999997765555666665554444 444666676 33555 56666666444 6899999999999
Q ss_pred ceEEEEecCeeeeeecCCCC
Q psy14086 286 PSIYVYKNGVRTAEYNGSRD 305 (324)
Q Consensus 286 P~l~~~~~g~~~~~~~g~~~ 305 (324)
|++++|++|+......|.++
T Consensus 84 PaLvf~R~g~~lG~i~gi~d 103 (107)
T PF07449_consen 84 PALVFFRDGRYLGAIEGIRD 103 (107)
T ss_dssp SEEEEEETTEEEEEEESSST
T ss_pred CeEEEEECCEEEEEecCeec
Confidence 99999999998877777654
No 295
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.67 E-value=0.00057 Score=53.61 Aligned_cols=87 Identities=13% Similarity=0.173 Sum_probs=59.0
Q ss_pred cCCcEEEEEeCCC-ChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc---------------------cchhhhhhcC
Q psy14086 224 KSGTVFIKFFAPW-CGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---------------------LSKDLCNQEG 281 (324)
Q Consensus 224 ~~~~~~v~f~~~~-c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~---------------------~~~~~~~~~~ 281 (324)
.++.++|.||+.| |++|....+.+++++.+ +. ++.++.++.+.. ....+++.||
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~-~~---~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~g 118 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAE-LD---NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYG 118 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHH-cC---CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhC
Confidence 4568999999999 99999999999999866 32 466666665540 1125677888
Q ss_pred CCccc---------eEEEEe-cCeeeeeecC-----CCCHHHHHHHHH
Q psy14086 282 VDGFP---------SIYVYK-NGVRTAEYNG-----SRDLEELYQFIL 314 (324)
Q Consensus 282 i~~~P---------~l~~~~-~g~~~~~~~g-----~~~~~~l~~fi~ 314 (324)
+...| +.+++. +|+.+..+.+ ....+++.++|+
T Consensus 119 v~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 119 VAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred CeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 87666 777774 6765544422 135667766654
No 296
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.66 E-value=0.00042 Score=56.12 Aligned_cols=86 Identities=8% Similarity=0.193 Sum_probs=60.1
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---------------------------cchhhhhhCCcc-
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---------------------------QHRSICQSFDIK- 152 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---------------------------~~~~~~~~~~i~- 152 (324)
++.|++.||+.|....+.+.++..+|+.. ++.++.+.++ ....+++.||+.
T Consensus 32 L~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~ 110 (202)
T PRK13190 32 LFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLID 110 (202)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCcc
Confidence 34689999999999999999999988642 3444444332 235677778874
Q ss_pred -----ccceEEEEeC-CeEeeee----cCCCCHHHHHHHHHhhhC
Q psy14086 153 -----SYPTLLWIES-GKKLDKF----QGSRTLETLVNYVSKMKG 187 (324)
Q Consensus 153 -----~~P~~~~~~~-g~~~~~~----~g~~~~~~i~~fi~~~~~ 187 (324)
.+|+.+++++ |...... .+.++.+++.+.|+.+..
T Consensus 111 ~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 111 ENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred ccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 4799999986 4333222 345799999998887654
No 297
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.66 E-value=0.0005 Score=52.75 Aligned_cols=74 Identities=8% Similarity=0.180 Sum_probs=49.8
Q ss_pred CCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc---------------------c--hhhhhhCCccc
Q psy14086 98 GNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ---------------------H--RSICQSFDIKS 153 (324)
Q Consensus 98 ~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~---------------------~--~~~~~~~~i~~ 153 (324)
+++++.|| ++||+.|....+.+++++++++.. ++.++.|..+. . ..+.+.||+..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~ 107 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAA-GAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFD 107 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC-CCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCcc
Confidence 56677777 899999999999999999999642 46666655432 1 34556666652
Q ss_pred ------cceEEEEeC-CeEeeeecCC
Q psy14086 154 ------YPTLLWIES-GKKLDKFQGS 172 (324)
Q Consensus 154 ------~P~~~~~~~-g~~~~~~~g~ 172 (324)
.|+.++++. |+....+.|.
T Consensus 108 ~~~~~~~~~~~lid~~G~v~~~~~~~ 133 (149)
T cd03018 108 EDLGVAERAVFVIDRDGIIRYAWVSD 133 (149)
T ss_pred ccCCCccceEEEECCCCEEEEEEecC
Confidence 236667764 6555555553
No 298
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.65 E-value=0.00053 Score=52.63 Aligned_cols=97 Identities=16% Similarity=0.355 Sum_probs=60.1
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCCCCceEcChhhHHHHh-cCCCEEEEEeCCCCHhHhhHHH-HH--HHHHHhcCCCCCe
Q psy14086 57 TLTNFINEQISETPKEPSDKPIVNEGLVELTEESFEKYV-SLGNHFVKFYAPWCGHCQSLAP-VW--QELASHFKTEEDV 132 (324)
Q Consensus 57 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~-~~~~~~v~f~~~~c~~c~~~~~-~~--~~la~~~~~~~~i 132 (324)
+-..|++++... +-.=...+++.|+... ++++++|.++++||..|..+.. .| .+++..+.. .+
T Consensus 7 ~~Spyl~~ha~~-----------~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~--~F 73 (163)
T PF03190_consen 7 SKSPYLRQHAHN-----------PVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR--NF 73 (163)
T ss_dssp ---HHHHTTTTS-----------SS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH--H-
T ss_pred CCCHHHHHhccC-----------CCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC--CE
Confidence 345577777654 1123566778887766 5668999999999999998875 23 356666654 68
Q ss_pred EEEEeccccchhhhhhC--------CccccceEEEEeC-CeEe
Q psy14086 133 SIAKIDCTQHRSICQSF--------DIKSYPTLLWIES-GKKL 166 (324)
Q Consensus 133 ~~~~vd~~~~~~~~~~~--------~i~~~P~~~~~~~-g~~~ 166 (324)
.-++||.++.+++...| |..++|+.+++.+ |+..
T Consensus 74 I~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 74 IPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EE
T ss_pred EEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCee
Confidence 88999999999998887 7789999999987 5443
No 299
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.62 E-value=0.0011 Score=52.92 Aligned_cols=89 Identities=17% Similarity=0.163 Sum_probs=61.9
Q ss_pred CCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-----------------------cchhhhhhc
Q psy14086 225 SGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-----------------------LSKDLCNQE 280 (324)
Q Consensus 225 ~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-----------------------~~~~~~~~~ 280 (324)
++++++.|| +.||+.|....+.+.++..++... ++.+..++.+.. .+..+++.|
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~--g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~y 108 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKL--GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF 108 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHc
Confidence 467899999 999999999999999988664333 344555554431 134677888
Q ss_pred CC----Ccc--ceEEEEe-cCeeeeeec----CCCCHHHHHHHHHh
Q psy14086 281 GV----DGF--PSIYVYK-NGVRTAEYN----GSRDLEELYQFILK 315 (324)
Q Consensus 281 ~i----~~~--P~l~~~~-~g~~~~~~~----g~~~~~~l~~fi~~ 315 (324)
|+ .++ |+.+++. +|+....+. ..++.+++.+.|+.
T Consensus 109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence 87 355 8888885 776543322 23688999998864
No 300
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.61 E-value=0.00044 Score=57.20 Aligned_cols=81 Identities=26% Similarity=0.385 Sum_probs=57.7
Q ss_pred CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEE--ec----------------CC-----------------
Q psy14086 226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV--DC----------------TQ----------------- 270 (324)
Q Consensus 226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~i--d~----------------~~----------------- 270 (324)
+..++.|..+.|++|+.+.+.+.++... ++.+..+ .. ..
T Consensus 108 k~~I~vFtDp~CpyCkkl~~~l~~~~~~------~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~ 181 (232)
T PRK10877 108 KHVITVFTDITCGYCHKLHEQMKDYNAL------GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP 181 (232)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHhcC------CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence 4689999999999999998888776521 1121111 10 00
Q ss_pred -------ccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHhh
Q psy14086 271 -------ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316 (324)
Q Consensus 271 -------~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~ 316 (324)
..+.++++++||++.|+++ +.+|+.+ .|..+.+.|.++|.+.
T Consensus 182 ~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 182 ASCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 1234778889999999998 6788554 7888999999999764
No 301
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.61 E-value=0.00061 Score=56.34 Aligned_cols=80 Identities=15% Similarity=0.350 Sum_probs=57.5
Q ss_pred CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEE------------------------------------------E
Q psy14086 99 NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIA------------------------------------------K 136 (324)
Q Consensus 99 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~------------------------------------------~ 136 (324)
..++.|..+.|++|+++.+.+.++.+. + -.+.+. .
T Consensus 109 ~~I~vFtDp~CpyCkkl~~~l~~~~~~--~-v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~ 185 (232)
T PRK10877 109 HVITVFTDITCGYCHKLHEQMKDYNAL--G-ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCD 185 (232)
T ss_pred EEEEEEECCCChHHHHHHHHHHHHhcC--C-eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccccc
Confidence 468899999999999999988877542 0 011111 0
Q ss_pred eccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHhh
Q psy14086 137 IDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM 185 (324)
Q Consensus 137 vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~ 185 (324)
.+..++..+++++||++.|+++ +.+|+. ..|..+.++|.++|.+.
T Consensus 186 ~~v~~~~~la~~lgi~gTPtiv-~~~G~~---~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 186 VDIADHYALGVQFGVQGTPAIV-LSNGTL---VPGYQGPKEMKAFLDEH 230 (232)
T ss_pred chHHHhHHHHHHcCCccccEEE-EcCCeE---eeCCCCHHHHHHHHHHc
Confidence 1112336788899999999988 666754 47889999999999764
No 302
>KOG3425|consensus
Probab=97.58 E-value=0.0005 Score=48.90 Aligned_cols=65 Identities=26% Similarity=0.443 Sum_probs=50.4
Q ss_pred cCCCEEEEEeC--------CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc-------hhhhhhCCc-cccceEEE
Q psy14086 96 SLGNHFVKFYA--------PWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH-------RSICQSFDI-KSYPTLLW 159 (324)
Q Consensus 96 ~~~~~~v~f~~--------~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~-------~~~~~~~~i-~~~P~~~~ 159 (324)
+++..+++|++ +||+.|.+..|.+.++-+.... ++.|+.|++.+- ..+....++ +.+||++=
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlr 101 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLR 101 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCCCcccCCCCccccCCCceeecceeeE
Confidence 34457888986 8999999999999999987766 799999998643 234455566 78999987
Q ss_pred EeC
Q psy14086 160 IES 162 (324)
Q Consensus 160 ~~~ 162 (324)
+.+
T Consensus 102 w~~ 104 (128)
T KOG3425|consen 102 WKR 104 (128)
T ss_pred EcC
Confidence 764
No 303
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.58 E-value=0.00045 Score=45.61 Aligned_cols=67 Identities=13% Similarity=0.293 Sum_probs=43.8
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhh----CCccccceEEEEeCCeEeeeecCCCCHH
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQS----FDIKSYPTLLWIESGKKLDKFQGSRTLE 176 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~----~~i~~~P~~~~~~~g~~~~~~~g~~~~~ 176 (324)
++.|+++||++|..+...+.+. .+.+..+|.+.+....+. .++.++|++++ +|. ...| .+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g-~~~~ 67 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSG-FRPD 67 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEec-CCHH
Confidence 5789999999999988777652 355566666554433333 36788998875 342 2333 4666
Q ss_pred HHHHH
Q psy14086 177 TLVNY 181 (324)
Q Consensus 177 ~i~~f 181 (324)
.|.++
T Consensus 68 ~l~~~ 72 (73)
T cd02976 68 KLRAL 72 (73)
T ss_pred HHHhh
Confidence 77665
No 304
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.58 E-value=0.00032 Score=46.32 Aligned_cols=67 Identities=19% Similarity=0.349 Sum_probs=43.6
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhh----hhcCCCccceEEEEecCeeeeeecCCC
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLC----NQEGVDGFPSIYVYKNGVRTAEYNGSR 304 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~----~~~~i~~~P~l~~~~~g~~~~~~~g~~ 304 (324)
++.|+.+||++|..+...+.+. ++.+..++.+. +.... +..++.++|++++ +|. ...| .
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~---------~i~~~~~~i~~--~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g-~ 64 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER---------GIPFEEVDVDE--DPEALEELKKLNGYRSVPVVVI--GDE---HLSG-F 64 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC---------CCCeEEEeCCC--CHHHHHHHHHHcCCcccCEEEE--CCE---EEec-C
Confidence 5789999999999988777653 35566677665 33332 3336789999965 443 3344 3
Q ss_pred CHHHHHHH
Q psy14086 305 DLEELYQF 312 (324)
Q Consensus 305 ~~~~l~~f 312 (324)
+.+.|.++
T Consensus 65 ~~~~l~~~ 72 (73)
T cd02976 65 RPDKLRAL 72 (73)
T ss_pred CHHHHHhh
Confidence 56666665
No 305
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.56 E-value=0.00046 Score=52.59 Aligned_cols=73 Identities=10% Similarity=0.154 Sum_probs=51.1
Q ss_pred cCCCEEEEEeCCC-CHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc-----------------------hhhhhhCCc
Q psy14086 96 SLGNHFVKFYAPW-CGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH-----------------------RSICQSFDI 151 (324)
Q Consensus 96 ~~~~~~v~f~~~~-c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~-----------------------~~~~~~~~i 151 (324)
..+++++.||+.| |++|...++.+.++.+++. ++.++.|+.+.. ..+++.||+
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv 101 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGV 101 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCC
Confidence 3567899999998 6999999999999999985 366776665421 345556666
Q ss_pred cc------cceEEEEeC-CeEeeeecC
Q psy14086 152 KS------YPTLLWIES-GKKLDKFQG 171 (324)
Q Consensus 152 ~~------~P~~~~~~~-g~~~~~~~g 171 (324)
.. .|+.++++. |.....+.|
T Consensus 102 ~~~~~~~~~~~~~iid~~G~I~~~~~~ 128 (143)
T cd03014 102 LIKDLGLLARAVFVIDENGKVIYVELV 128 (143)
T ss_pred eeccCCccceEEEEEcCCCeEEEEEEC
Confidence 42 577777764 655544443
No 306
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.56 E-value=0.00059 Score=46.96 Aligned_cols=76 Identities=18% Similarity=0.241 Sum_probs=53.3
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc----hhhhhhCCc--cccceEEEEeCCeEeeeecCCCC
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH----RSICQSFDI--KSYPTLLWIESGKKLDKFQGSRT 174 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~----~~~~~~~~i--~~~P~~~~~~~g~~~~~~~g~~~ 174 (324)
+++|..+||++|.+....|+++...+. .+.+..+|.+.+ ..+.+..|- .++|.+++ +|+. .| .
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~----ig--G 70 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKH----VG--G 70 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEE----ec--C
Confidence 678999999999999999998876543 366766676532 346666664 68998854 4533 23 3
Q ss_pred HHHHHHHHHhhhC
Q psy14086 175 LETLVNYVSKMKG 187 (324)
Q Consensus 175 ~~~i~~fi~~~~~ 187 (324)
.++|.+++++..+
T Consensus 71 ~~dl~~~~~~~~~ 83 (86)
T TIGR02183 71 CTDFEQLVKENFD 83 (86)
T ss_pred HHHHHHHHHhccc
Confidence 4788888877554
No 307
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.55 E-value=0.0011 Score=52.92 Aligned_cols=89 Identities=11% Similarity=0.100 Sum_probs=62.9
Q ss_pred CCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-------------------------cchhhhhhCC
Q psy14086 97 LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-------------------------QHRSICQSFD 150 (324)
Q Consensus 97 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-------------------------~~~~~~~~~~ 150 (324)
.+++++.|| +.||+.|....+.|.+++.+|... ++.++.|..+ .+..+++.||
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 446788888 999999999999999999998642 3444443332 2356788888
Q ss_pred cc----cc--ceEEEEeC-CeEeeeec----CCCCHHHHHHHHHhhh
Q psy14086 151 IK----SY--PTLLWIES-GKKLDKFQ----GSRTLETLVNYVSKMK 186 (324)
Q Consensus 151 i~----~~--P~~~~~~~-g~~~~~~~----g~~~~~~i~~fi~~~~ 186 (324)
+. +. |+.+++++ |.....+. ..++.+++.+.+..+-
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 83 45 99999986 54433332 2368999999887654
No 308
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.54 E-value=0.0011 Score=53.74 Aligned_cols=90 Identities=10% Similarity=0.189 Sum_probs=60.2
Q ss_pred CCcEEE-EEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-------------------------ccchhhhh
Q psy14086 225 SGTVFI-KFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-------------------------ELSKDLCN 278 (324)
Q Consensus 225 ~~~~~v-~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-------------------------~~~~~~~~ 278 (324)
++.++| .|++.||+.|....+.+.++..++... ++.+..++++. +.+..+++
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~--~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~ 104 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL--GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAR 104 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHH
Confidence 454444 689999999999999999888664433 34444444432 01346667
Q ss_pred hcCCC------ccceEEEEe-cCeeeeee----cCCCCHHHHHHHHHhh
Q psy14086 279 QEGVD------GFPSIYVYK-NGVRTAEY----NGSRDLEELYQFILKH 316 (324)
Q Consensus 279 ~~~i~------~~P~l~~~~-~g~~~~~~----~g~~~~~~l~~fi~~~ 316 (324)
.||+. .+|+.+++. +|+..... .+.++.+++.+.|+..
T Consensus 105 ~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 105 EYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred HcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 78873 489998885 66554322 3447899999988764
No 309
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.51 E-value=0.00068 Score=53.73 Aligned_cols=43 Identities=9% Similarity=0.188 Sum_probs=35.8
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~ 140 (324)
..++++|.|||+||+.|.+ .+.|++++++|++. .+.++.+.|+
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~-gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQ-GFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhC-CeEEEEeecc
Confidence 3567899999999999975 88999999999753 5888888773
No 310
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.51 E-value=0.00062 Score=53.97 Aligned_cols=55 Identities=20% Similarity=0.370 Sum_probs=38.9
Q ss_pred eeEecccc--ccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC
Q psy14086 211 VVSLTSEN--FNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269 (324)
Q Consensus 211 v~~l~~~~--~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~ 269 (324)
+..++++. +.+ ..+++++|.|+|.||+.|+. .+.|+++.+++... ++.+..+.++
T Consensus 10 ~~~~~G~~v~Ls~-~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~--gl~Vlg~p~n 66 (183)
T PRK10606 10 VTTIDGEVTTLEK-YAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQ--GFVVLGFPCN 66 (183)
T ss_pred eECCCCCEEeHHH-hCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhC--CeEEEEeecc
Confidence 44444443 323 24678999999999999975 88999999775433 5777777763
No 311
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.51 E-value=0.0006 Score=51.67 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=34.6
Q ss_pred cCCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc
Q psy14086 96 SLGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140 (324)
Q Consensus 96 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~ 140 (324)
.+++++|.|| +.||+.|....+.+.+++.+++.. .+.|+.|..+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~~i~is~d 65 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG-GAEVLGVSVD 65 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 4667888899 789999999999999999998532 4666666543
No 312
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.49 E-value=0.00035 Score=47.50 Aligned_cols=78 Identities=15% Similarity=0.328 Sum_probs=58.3
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCC--eEeeeecCCCCHHHH
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG--KKLDKFQGSRTLETL 178 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g--~~~~~~~g~~~~~~i 178 (324)
+++|..+.|.-|..+...++.+.... .+.+-.+|++.++.+.++|+. .+|.+.+-..+ .......+.++.+.|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L 76 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQL 76 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHH
Confidence 67899999999999999998866554 488999999999999999996 69965543211 112335678999999
Q ss_pred HHHHH
Q psy14086 179 VNYVS 183 (324)
Q Consensus 179 ~~fi~ 183 (324)
.+||+
T Consensus 77 ~~~L~ 81 (81)
T PF05768_consen 77 RAWLE 81 (81)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99984
No 313
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.47 E-value=0.001 Score=50.35 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=52.6
Q ss_pred cCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------cchhhhhhcCC
Q psy14086 224 KSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------LSKDLCNQEGV 282 (324)
Q Consensus 224 ~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------~~~~~~~~~~i 282 (324)
.+++++|.|| +.||+.|....+.+.++..++... ++.++.+..+.. ....+.+.+++
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~ 98 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG--GAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGV 98 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCC
Confidence 4678899999 789999999999999998765333 566666665431 12345556666
Q ss_pred Cccc---------eEEEEe-cCeeeeeecCC
Q psy14086 283 DGFP---------SIYVYK-NGVRTAEYNGS 303 (324)
Q Consensus 283 ~~~P---------~l~~~~-~g~~~~~~~g~ 303 (324)
...| +++++. +|+.+..+.|.
T Consensus 99 ~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~ 129 (140)
T cd02971 99 LIEKSAGGGLAARATFIIDPDGKIRYVEVEP 129 (140)
T ss_pred ccccccccCceeEEEEEECCCCcEEEEEecC
Confidence 5554 666664 56666666665
No 314
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.47 E-value=0.00053 Score=43.59 Aligned_cols=56 Identities=25% Similarity=0.547 Sum_probs=39.6
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--cchhhhhhcCCCccceEEEEecCe
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--LSKDLCNQEGVDGFPSIYVYKNGV 295 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~i~~~P~l~~~~~g~ 295 (324)
++.|..+||++|+.....|++. ++.+..+|.+.. ...++.+..+..++|++++ +|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~---------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~ 58 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK---------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGK 58 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT---------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc---------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCE
Confidence 5789999999999998777433 366777787762 1233444458899999965 554
No 315
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.43 E-value=0.00062 Score=51.75 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=35.2
Q ss_pred cCCcEEEEEeCCCChh-hhhhhHhHHHHHHHhhcCC-CCeEEEEEecC
Q psy14086 224 KSGTVFIKFFAPWCGH-CKRLAPTWEELGTKLLDNK-HGIVIAKVDCT 269 (324)
Q Consensus 224 ~~~~~~v~f~~~~c~~-C~~~~~~~~~~a~~~~~~~-~~~~~~~id~~ 269 (324)
.++.++|.||++||++ |....+.++++..++.... .++.+..+..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 4678999999999998 9999999999986643321 24777777654
No 316
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.41 E-value=0.0034 Score=44.37 Aligned_cols=90 Identities=19% Similarity=0.260 Sum_probs=61.2
Q ss_pred ChhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch----hhhhhCCccc-cceEE
Q psy14086 87 TEESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR----SICQSFDIKS-YPTLL 158 (324)
Q Consensus 87 ~~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~----~~~~~~~i~~-~P~~~ 158 (324)
+.++++++++ +++++++=.++.|+-.......|++......+ .+.++.+|..+++ .++++|||.. -|.++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~--~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~i 83 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD--EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVI 83 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc--cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEE
Confidence 4567777774 45667777788899999999999999988876 5899999988764 5788999994 89999
Q ss_pred EEeCCeEeeeec-CCCCHHHH
Q psy14086 159 WIESGKKLDKFQ-GSRTLETL 178 (324)
Q Consensus 159 ~~~~g~~~~~~~-g~~~~~~i 178 (324)
++++|+.+..-. ..++.++|
T Consensus 84 li~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 84 LIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEETTEEEEEEEGGG-SHHHH
T ss_pred EEECCEEEEECccccCCHHhc
Confidence 999998763221 34666655
No 317
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.41 E-value=0.0012 Score=45.43 Aligned_cols=77 Identities=21% Similarity=0.294 Sum_probs=52.6
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc--chhhhhhcCC--CccceEEEEecCeeeeeecCCC
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL--SKDLCNQEGV--DGFPSIYVYKNGVRTAEYNGSR 304 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~--~~~~~~~~~i--~~~P~l~~~~~g~~~~~~~g~~ 304 (324)
+++|..+||++|......|+++..+ + ..+.+..+|.+... ..++.+..+- .++|.++ -+|+. -|.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~-~---~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~----igG- 70 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIE-R---ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKH----VGG- 70 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcc-c---CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEE----ecC-
Confidence 6789999999999999999888633 1 13667777776411 2345555663 6899993 45543 243
Q ss_pred CHHHHHHHHHhhc
Q psy14086 305 DLEELYQFILKHK 317 (324)
Q Consensus 305 ~~~~l~~fi~~~~ 317 (324)
.++|.+++++..
T Consensus 71 -~~dl~~~~~~~~ 82 (86)
T TIGR02183 71 -CTDFEQLVKENF 82 (86)
T ss_pred -HHHHHHHHHhcc
Confidence 588888887754
No 318
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.40 E-value=0.0015 Score=52.99 Aligned_cols=86 Identities=14% Similarity=0.261 Sum_probs=59.6
Q ss_pred EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc---------------------------chhhhhhCCcc
Q psy14086 100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ---------------------------HRSICQSFDIK 152 (324)
Q Consensus 100 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~---------------------------~~~~~~~~~i~ 152 (324)
+++.|++.||+.|....+.|.+++.+|+.. ++.++.|.++. ...+++.||+.
T Consensus 29 vlf~~pa~~cp~C~~el~~l~~~~~~f~~~-gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 29 ILFSHPADFTPVCTTELGAFAKLAPEFKKR-NVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEecCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 356899999999999999999999999653 45555554432 24567788875
Q ss_pred ----c----cceEEEEeC-CeEeeeecC----CCCHHHHHHHHHhhh
Q psy14086 153 ----S----YPTLLWIES-GKKLDKFQG----SRTLETLVNYVSKMK 186 (324)
Q Consensus 153 ----~----~P~~~~~~~-g~~~~~~~g----~~~~~~i~~fi~~~~ 186 (324)
+ .|+.+++++ |+....+.+ .++.+++.+.|..+.
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 2 356788876 544433333 357888888887653
No 319
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.39 E-value=0.00037 Score=53.50 Aligned_cols=74 Identities=19% Similarity=0.449 Sum_probs=47.2
Q ss_pred ccccc-cCCcEEEEEeCCCChhhhhhhH-hHH--HHHHHhhcCCCCeEEEEEecCCccchhhhhhc--------CCCccc
Q psy14086 219 FNDVI-KSGTVFIKFFAPWCGHCKRLAP-TWE--ELGTKLLDNKHGIVIAKVDCTQELSKDLCNQE--------GVDGFP 286 (324)
Q Consensus 219 ~~~~~-~~~~~~v~f~~~~c~~C~~~~~-~~~--~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~--------~i~~~P 286 (324)
++..- ++++++|.++..||+.|..+.. .|. ++| ++++. ++.-+++|.++ .+++...| +..++|
T Consensus 30 ~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa-~~lN~--~FI~VkvDree--~Pdid~~y~~~~~~~~~~gGwP 104 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVA-EYLNR--NFIPVKVDREE--RPDIDKIYMNAVQAMSGSGGWP 104 (163)
T ss_dssp HHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHH-HHHHH--H-EEEEEETTT---HHHHHHHHHHHHHHHS---SS
T ss_pred HHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHH-HHHhC--CEEEEEecccc--CccHHHHHHHHHHHhcCCCCCC
Confidence 44433 3568999999999999998764 553 566 44544 68888899888 78887777 778999
Q ss_pred eEEEE-ecCeee
Q psy14086 287 SIYVY-KNGVRT 297 (324)
Q Consensus 287 ~l~~~-~~g~~~ 297 (324)
+.++. ++|+.+
T Consensus 105 l~vfltPdg~p~ 116 (163)
T PF03190_consen 105 LTVFLTPDGKPF 116 (163)
T ss_dssp EEEEE-TTS-EE
T ss_pred ceEEECCCCCee
Confidence 99888 567664
No 320
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.34 E-value=0.0029 Score=52.99 Aligned_cols=94 Identities=15% Similarity=0.241 Sum_probs=63.7
Q ss_pred HHHhcCCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc----------------------------cc
Q psy14086 92 EKYVSLGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT----------------------------QH 142 (324)
Q Consensus 92 ~~~~~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~----------------------------~~ 142 (324)
.++..++.+++.|| +.||+.|....+.|.+++.+|+.. ++.++.+.++ .+
T Consensus 93 sd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~-gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~ 171 (261)
T PTZ00137 93 SDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER-GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDIS 171 (261)
T ss_pred HHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCC
Confidence 44434556666666 899999999999999999998642 2333333322 12
Q ss_pred hhhhhhCCcc-----ccceEEEEeC-CeEeeee----cCCCCHHHHHHHHHhhh
Q psy14086 143 RSICQSFDIK-----SYPTLLWIES-GKKLDKF----QGSRTLETLVNYVSKMK 186 (324)
Q Consensus 143 ~~~~~~~~i~-----~~P~~~~~~~-g~~~~~~----~g~~~~~~i~~fi~~~~ 186 (324)
..+++.||+. ..|+.+++++ |.....+ ...++.+++.+.|..+.
T Consensus 172 ~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 172 REVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred hHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 4677888885 4799999985 6544433 23468888888887654
No 321
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.33 E-value=0.0043 Score=44.19 Aligned_cols=93 Identities=11% Similarity=0.195 Sum_probs=67.4
Q ss_pred eEc-ChhhHHHHhc-CC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEE
Q psy14086 84 VEL-TEESFEKYVS-LG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160 (324)
Q Consensus 84 ~~l-~~~~f~~~~~-~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~ 160 (324)
..+ +.+.+++++. .. ..+|.|+...-.+ ....|.++|..++. .+.|+.. .+..+...+++. .|+++++
T Consensus 3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~~---~~~~F~~vA~~~R~--d~~F~~~---~~~~~~~~~~~~-~~~i~l~ 73 (102)
T cd03066 3 EIINSERELQAFENIEDDIKLIGYFKSEDSE---HYKAFEEAAEEFHP--YIKFFAT---FDSKVAKKLGLK-MNEVDFY 73 (102)
T ss_pred eEcCCHHHHHHHhcccCCeEEEEEECCCCCH---HHHHHHHHHHhhhc--CCEEEEE---CcHHHHHHcCCC-CCcEEEe
Confidence 344 4566888886 44 4567777664443 56789999999987 7888743 345677778775 6889999
Q ss_pred eC-CeEeeee-cCCCCHHHHHHHHHhh
Q psy14086 161 ES-GKKLDKF-QGSRTLETLVNYVSKM 185 (324)
Q Consensus 161 ~~-g~~~~~~-~g~~~~~~i~~fi~~~ 185 (324)
+. ......| .|..+.+.|.+||...
T Consensus 74 ~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 74 EPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 76 5444568 7788999999999753
No 322
>KOG0911|consensus
Probab=97.33 E-value=0.00013 Score=57.97 Aligned_cols=75 Identities=15% Similarity=0.353 Sum_probs=64.7
Q ss_pred CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCC
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR 304 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~ 304 (324)
.+..++.||++||..|+.+...+..++ ++. . ++.|++++++. .++++..+.+...|.++++..|+.+....|..
T Consensus 17 ~~~~~~~f~a~wa~~~~q~~~v~~~~~-~~~-~--~~~~~k~~a~~--~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~ 90 (227)
T KOG0911|consen 17 GKLLVLHFWAIWAVVQKQMDQVFDHLA-EYF-K--NAQFLKLEAEE--FPEISNLIAVEAVPYFVFFFLGEKVDRLSGAD 90 (227)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHH-Hhh-h--hheeeeehhhh--hhHHHHHHHHhcCceeeeeecchhhhhhhccC
Confidence 457899999999999999999999999 445 3 69999999999 99999999999999999998887776666654
Q ss_pred C
Q psy14086 305 D 305 (324)
Q Consensus 305 ~ 305 (324)
.
T Consensus 91 ~ 91 (227)
T KOG0911|consen 91 P 91 (227)
T ss_pred c
Confidence 3
No 323
>KOG3414|consensus
Probab=97.32 E-value=0.0022 Score=45.99 Aligned_cols=99 Identities=10% Similarity=0.231 Sum_probs=75.5
Q ss_pred hhHHHHh---cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeE
Q psy14086 89 ESFEKYV---SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKK 165 (324)
Q Consensus 89 ~~f~~~~---~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~ 165 (324)
...++.+ ..+.+++.|--.|.+.|.++-..+.++++...+ -..++-+|.++-+.+.+.|++...|++++|-+++.
T Consensus 12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn--fa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH 89 (142)
T KOG3414|consen 12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN--FAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH 89 (142)
T ss_pred HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh--ceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence 3444444 234568999999999999999999999999987 67888899999999999999999999988855543
Q ss_pred ee---------eecCC-CCHHHHHHHHHhhhCCC
Q psy14086 166 LD---------KFQGS-RTLETLVNYVSKMKGPL 189 (324)
Q Consensus 166 ~~---------~~~g~-~~~~~i~~fi~~~~~~~ 189 (324)
.. +..+. -+.+++.+.++....+.
T Consensus 90 mkiD~gtgdn~Kin~~~~~kq~~Idiie~iyRga 123 (142)
T KOG3414|consen 90 MKIDLGTGDNNKINFAFEDKQEFIDIIETIYRGA 123 (142)
T ss_pred EEEeeCCCCCceEEEEeccHHHHHHHHHHHHHhh
Confidence 21 22333 35777777777666554
No 324
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.29 E-value=0.002 Score=48.99 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=52.0
Q ss_pred cCCcEEEEEeCCC-ChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------cc-hhhhhhcC
Q psy14086 224 KSGTVFIKFFAPW-CGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------LS-KDLCNQEG 281 (324)
Q Consensus 224 ~~~~~~v~f~~~~-c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------~~-~~~~~~~~ 281 (324)
.+++++|.||+.| |++|+...+.+.++..+ +. ++.++.|+.+.. .. ..+.+.|+
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~-~~---~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~g 100 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAK-LD---NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYG 100 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHh-cC---CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhC
Confidence 4578999999998 68999999999999866 43 467777776531 01 34455667
Q ss_pred CCc------cceEEEEe-cCeeeeeecC
Q psy14086 282 VDG------FPSIYVYK-NGVRTAEYNG 302 (324)
Q Consensus 282 i~~------~P~l~~~~-~g~~~~~~~g 302 (324)
+.. .|+.+++. +|+.+....|
T Consensus 101 v~~~~~~~~~~~~~iid~~G~I~~~~~~ 128 (143)
T cd03014 101 VLIKDLGLLARAVFVIDENGKVIYVELV 128 (143)
T ss_pred CeeccCCccceEEEEEcCCCeEEEEEEC
Confidence 642 57877774 6776555543
No 325
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.29 E-value=0.004 Score=52.16 Aligned_cols=95 Identities=14% Similarity=0.197 Sum_probs=63.2
Q ss_pred cccccCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------------c
Q psy14086 220 NDVIKSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------------L 272 (324)
Q Consensus 220 ~~~~~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------------~ 272 (324)
.+...++.+++.|| +.||+.|....+.+.++..++... ++.+..+..+.. .
T Consensus 93 sd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~--gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~ 170 (261)
T PTZ00137 93 SDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER--GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDI 170 (261)
T ss_pred HHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcC
Confidence 33334557777777 799999999999999988665433 344444444330 1
Q ss_pred chhhhhhcCCC-----ccceEEEEe-cCeeeeee----cCCCCHHHHHHHHHhh
Q psy14086 273 SKDLCNQEGVD-----GFPSIYVYK-NGVRTAEY----NGSRDLEELYQFILKH 316 (324)
Q Consensus 273 ~~~~~~~~~i~-----~~P~l~~~~-~g~~~~~~----~g~~~~~~l~~fi~~~ 316 (324)
+..+++.||+. ..|+.+++. +|+....+ ...++.+++.+.|...
T Consensus 171 ~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 171 SREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred ChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 24667788874 479998885 67654433 2236888888888643
No 326
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.24 E-value=0.0012 Score=41.99 Aligned_cols=51 Identities=14% Similarity=0.367 Sum_probs=37.3
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh----hhhhCCccccceEEE
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS----ICQSFDIKSYPTLLW 159 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~ 159 (324)
+++|..++|++|+.....|++. ++.+-.+|.+.+.. +.+..|..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 4789999999999988887432 36677777765533 333349999998876
No 327
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.24 E-value=0.0012 Score=45.47 Aligned_cols=95 Identities=21% Similarity=0.404 Sum_probs=69.6
Q ss_pred ccccccccCC-cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCC----ccc-eEEE
Q psy14086 217 ENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD----GFP-SIYV 290 (324)
Q Consensus 217 ~~~~~~~~~~-~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~----~~P-~l~~ 290 (324)
++|...+..+ .++|.|..+. ..-......+.++|.. ..+ .-.++++||...+...+|+++.+. .-| .|.-
T Consensus 10 KdfKKLLRTr~NVLvLy~ks~-k~a~~~Lk~~~~~A~~-vkG--~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkH 85 (112)
T cd03067 10 KDFKKLLRTRNNVLVLYSKSA-KSAEALLKLLSDVAQA-VKG--QGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKH 85 (112)
T ss_pred HHHHHHHhhcCcEEEEEecch-hhHHHHHHHHHHHHHH-hcC--ceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhc
Confidence 4466666554 5777776543 3334456688888855 444 467888999887788999999997 444 4567
Q ss_pred EecCeeeeeecCCCCHHHHHHHHHh
Q psy14086 291 YKNGVRTAEYNGSRDLEELYQFILK 315 (324)
Q Consensus 291 ~~~g~~~~~~~g~~~~~~l~~fi~~ 315 (324)
|++|.--..|+-..+..+|.+|+++
T Consensus 86 YKdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 86 YKDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred ccCCCccccccchhhHHHHHHHhhC
Confidence 8999777778888999999999975
No 328
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.23 E-value=0.002 Score=52.01 Aligned_cols=77 Identities=16% Similarity=0.272 Sum_probs=52.8
Q ss_pred CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEE------------------------------------------
Q psy14086 98 GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIA------------------------------------------ 135 (324)
Q Consensus 98 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~------------------------------------------ 135 (324)
+..++.|+.+.|++|+++.+.+.+. .++-.+.+.
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~~----~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~ 153 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKPN----ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAAS 153 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhhc----cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccc
Confidence 3568999999999999999888751 110011111
Q ss_pred -EeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHH
Q psy14086 136 -KIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV 182 (324)
Q Consensus 136 -~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi 182 (324)
..+...+..+++++||+++|+++ +.+|.. +.|..+.++|.++|
T Consensus 154 ~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 154 CDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred cCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 11222336788899999999997 666754 56888888888764
No 329
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.20 E-value=0.0017 Score=43.80 Aligned_cols=71 Identities=20% Similarity=0.403 Sum_probs=46.3
Q ss_pred CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-cchhhhhhcCCCccceEEEEecCeeeeeecCCC
Q psy14086 226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR 304 (324)
Q Consensus 226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~ 304 (324)
..-++.|..+||+.|+.....|.+. ++.+-.+|++.. ...++....+...+|.++ -+|+.+ |.
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~---------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~~i----gG- 70 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK---------GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGKLI----GG- 70 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc---------CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCEEE----cC-
Confidence 4457789999999999998888643 355556676652 113444556788999994 366432 32
Q ss_pred CHHHHHHHH
Q psy14086 305 DLEELYQFI 313 (324)
Q Consensus 305 ~~~~l~~fi 313 (324)
.++|.+||
T Consensus 71 -~~~l~~~l 78 (79)
T TIGR02190 71 -SDELEAYL 78 (79)
T ss_pred -HHHHHHHh
Confidence 36666665
No 330
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.19 E-value=0.0025 Score=43.00 Aligned_cols=69 Identities=22% Similarity=0.379 Sum_probs=46.2
Q ss_pred CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc---hhhhhhCCccccceEEEEeCCeEeeeecCCCC
Q psy14086 98 GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH---RSICQSFDIKSYPTLLWIESGKKLDKFQGSRT 174 (324)
Q Consensus 98 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~---~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~ 174 (324)
...+++|..+||++|......|.+. ++.+-.+|++.+ ..+.+..|..++|.+++ +|+.+ |.
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i----gG-- 70 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI----GG-- 70 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE----cC--
Confidence 3457889999999999998888642 355556666544 34555568889998854 55432 22
Q ss_pred HHHHHHHH
Q psy14086 175 LETLVNYV 182 (324)
Q Consensus 175 ~~~i~~fi 182 (324)
.++|.+|+
T Consensus 71 ~~~l~~~l 78 (79)
T TIGR02190 71 SDELEAYL 78 (79)
T ss_pred HHHHHHHh
Confidence 36676665
No 331
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.16 E-value=0.0044 Score=50.62 Aligned_cols=88 Identities=9% Similarity=0.149 Sum_probs=61.2
Q ss_pred CCC-EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc---------------------------chhhhhh
Q psy14086 97 LGN-HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ---------------------------HRSICQS 148 (324)
Q Consensus 97 ~~~-~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~---------------------------~~~~~~~ 148 (324)
.+. +++.|++.||+.|....+.|.+++.+|... ++.++.+.++. +..+++.
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 444 367899999999999999999999999642 35555444432 2356777
Q ss_pred CCcc-------ccceEEEEeC-CeEeeee--c--CCCCHHHHHHHHHhh
Q psy14086 149 FDIK-------SYPTLLWIES-GKKLDKF--Q--GSRTLETLVNYVSKM 185 (324)
Q Consensus 149 ~~i~-------~~P~~~~~~~-g~~~~~~--~--g~~~~~~i~~fi~~~ 185 (324)
||+. ..|+.+++++ |+....+ . ..++.++|.+.|..+
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8873 5799999986 5443322 1 236788888888764
No 332
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.16 E-value=0.0059 Score=43.65 Aligned_cols=89 Identities=16% Similarity=0.279 Sum_probs=63.8
Q ss_pred ChhhHHHHhc-CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeC---
Q psy14086 87 TEESFEKYVS-LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIES--- 162 (324)
Q Consensus 87 ~~~~f~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~--- 162 (324)
+.++.++++. .+..+|.|+..... .....|.++|..++. .+.|+.. ....+...+++ .|++++|++
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~--d~~F~~~---~~~~~~~~~~~--~~~ivl~~p~~~ 76 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRE--SFRFAHT---SDKQLLEKYGY--GEGVVLFRPPRL 76 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh--cCEEEEE---ChHHHHHhcCC--CCceEEEechhh
Confidence 3456777664 44567777766443 356799999999987 6888754 34567788888 688888843
Q ss_pred ----CeEeeeecCCCCHHHHHHHHHhh
Q psy14086 163 ----GKKLDKFQGSRTLETLVNYVSKM 185 (324)
Q Consensus 163 ----g~~~~~~~g~~~~~~i~~fi~~~ 185 (324)
......|.|..+.+.|.+||...
T Consensus 77 ~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 77 SNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hcccCcccccccCcCCHHHHHHHHHhh
Confidence 22334589999999999999763
No 333
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.15 E-value=0.0019 Score=43.88 Aligned_cols=78 Identities=18% Similarity=0.271 Sum_probs=57.6
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecC--eeeeeecCCCCH
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNG--VRTAEYNGSRDL 306 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g--~~~~~~~g~~~~ 306 (324)
++.|..+.|+-|......+..++.. . .+.+-.+|+++ ++++..+|+. .+|.+.+-..+ .......+..+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~---~--~~~l~~vDI~~--d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~ 73 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE---F--PFELEEVDIDE--DPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDE 73 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT---S--TCEEEEEETTT--THHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-H
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh---c--CceEEEEECCC--CHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCH
Confidence 6789999999999999988887622 2 58899999998 8999999997 69987542211 112345577899
Q ss_pred HHHHHHHH
Q psy14086 307 EELYQFIL 314 (324)
Q Consensus 307 ~~l~~fi~ 314 (324)
+.|.+||+
T Consensus 74 ~~L~~~L~ 81 (81)
T PF05768_consen 74 EQLRAWLE 81 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999984
No 334
>PRK13189 peroxiredoxin; Provisional
Probab=97.15 E-value=0.0037 Score=51.35 Aligned_cols=85 Identities=11% Similarity=0.234 Sum_probs=58.4
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---------------------------cchhhhhhCCcc-
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---------------------------QHRSICQSFDIK- 152 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---------------------------~~~~~~~~~~i~- 152 (324)
++.|++.||+.|....+.|.+++.+|+.. ++.++.+.++ ....+++.||+.
T Consensus 40 L~f~pa~fcpvC~tEl~~l~~~~~ef~~~-~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~ 118 (222)
T PRK13189 40 LFSHPADFTPVCTTEFVAFQKRYDEFREL-NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMIS 118 (222)
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCc
Confidence 45778999999999999999999999642 3444444332 124566778865
Q ss_pred ------ccceEEEEeC-CeEeeeec----CCCCHHHHHHHHHhhh
Q psy14086 153 ------SYPTLLWIES-GKKLDKFQ----GSRTLETLVNYVSKMK 186 (324)
Q Consensus 153 ------~~P~~~~~~~-g~~~~~~~----g~~~~~~i~~fi~~~~ 186 (324)
..|+.+++++ |....... ..++.+++.+.|..+.
T Consensus 119 ~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 119 PGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred cccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 4688888886 54433222 3467888888887654
No 335
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.13 E-value=0.0023 Score=51.71 Aligned_cols=78 Identities=22% Similarity=0.378 Sum_probs=52.5
Q ss_pred CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC-----C-----------------------------
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT-----Q----------------------------- 270 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~-----~----------------------------- 270 (324)
.+..++.|+.+.|++|+.+.+.+.+.. . ++.+..+... .
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~-----~--~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~ 149 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNA-----D--GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPP 149 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhcc-----C--ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCC
Confidence 356899999999999999988776511 0 1111111110 0
Q ss_pred ---------ccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHH
Q psy14086 271 ---------ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313 (324)
Q Consensus 271 ---------~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi 313 (324)
..+..++..+||+++|+++ +.+|.. +.|..+.+.|.+||
T Consensus 150 ~~~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 150 PAASCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred CccccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 1134677889999999997 777765 46888888888764
No 336
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.09 E-value=0.0015 Score=44.37 Aligned_cols=71 Identities=21% Similarity=0.398 Sum_probs=45.8
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc---chhhhhhcCCCccceEEEEecCeeeeeecCCCC
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL---SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRD 305 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~---~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~ 305 (324)
++.|+++||++|..+...+.++.. .+.+..++..... ...+.+..+..++|.+ |-+|+.+ |.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i----gg-- 66 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI----GG-- 66 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE----cC--
Confidence 578999999999999999988762 3556666655410 0134455678889997 5566442 22
Q ss_pred HHHHHHHHH
Q psy14086 306 LEELYQFIL 314 (324)
Q Consensus 306 ~~~l~~fi~ 314 (324)
.+++.+..+
T Consensus 67 ~~~~~~~~~ 75 (82)
T cd03419 67 CDDLMALHK 75 (82)
T ss_pred HHHHHHHHH
Confidence 455555443
No 337
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.08 E-value=0.0054 Score=51.42 Aligned_cols=81 Identities=12% Similarity=0.271 Sum_probs=55.8
Q ss_pred CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc---------------------------------------
Q psy14086 99 NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC--------------------------------------- 139 (324)
Q Consensus 99 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~--------------------------------------- 139 (324)
..++.|..+.|++|+++.+.+..+.+. + ++.+..+-.
T Consensus 119 ~~I~vFtDp~CpyC~kl~~~l~~~~~~--g--~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 119 RIVYVFADPNCPYCKQFWQQARPWVDS--G--KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred eEEEEEECCCChhHHHHHHHHHHHhhc--C--ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 358899999999999999888765543 1 222211100
Q ss_pred -----------ccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHH
Q psy14086 140 -----------TQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS 183 (324)
Q Consensus 140 -----------~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~ 183 (324)
.++..+++.+||+++|++++-+.........|..+.++|.+.+.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 01234777899999999998875334445789999999988763
No 338
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.07 E-value=0.0071 Score=49.04 Aligned_cols=87 Identities=8% Similarity=0.203 Sum_probs=57.8
Q ss_pred EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-------------------------cchhhhhhcCC
Q psy14086 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-------------------------LSKDLCNQEGV 282 (324)
Q Consensus 228 ~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-------------------------~~~~~~~~~~i 282 (324)
+++.|++.||+.|....+.+.++..++... ++.++.++++.. ....+++.||+
T Consensus 29 vlf~~pa~~cp~C~~el~~l~~~~~~f~~~--gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~ 106 (203)
T cd03016 29 ILFSHPADFTPVCTTELGAFAKLAPEFKKR--NVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGM 106 (203)
T ss_pred EEEEecCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCC
Confidence 566889999999999999999999765444 456666655431 12356677886
Q ss_pred C----c----cceEEEE-ecCeeeeeecC----CCCHHHHHHHHHhh
Q psy14086 283 D----G----FPSIYVY-KNGVRTAEYNG----SRDLEELYQFILKH 316 (324)
Q Consensus 283 ~----~----~P~l~~~-~~g~~~~~~~g----~~~~~~l~~fi~~~ 316 (324)
. + .|+.+++ ++|+....+.+ .++.+++.+.|...
T Consensus 107 ~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 107 IDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred ccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 4 2 3456777 46765444333 35788888888653
No 339
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.07 E-value=0.0068 Score=49.54 Aligned_cols=90 Identities=6% Similarity=0.134 Sum_probs=60.6
Q ss_pred cCCCE-EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc---------------------------chhhhh
Q psy14086 96 SLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ---------------------------HRSICQ 147 (324)
Q Consensus 96 ~~~~~-~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~---------------------------~~~~~~ 147 (324)
.++.+ ++.|++.||+.|....+.|.+++.+|+.. ++.++.+.++. +..+++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~ 110 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAK 110 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHH
Confidence 34444 45789999999999999999999999642 35555444431 235566
Q ss_pred hCCcc-------ccceEEEEeC-CeEeeeec----CCCCHHHHHHHHHhhh
Q psy14086 148 SFDIK-------SYPTLLWIES-GKKLDKFQ----GSRTLETLVNYVSKMK 186 (324)
Q Consensus 148 ~~~i~-------~~P~~~~~~~-g~~~~~~~----g~~~~~~i~~fi~~~~ 186 (324)
.||+. ..|+.+++++ |.....+. -.++.+++.+.|+.+.
T Consensus 111 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 161 (215)
T PRK13191 111 RLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQ 161 (215)
T ss_pred HcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 77763 3688888876 54433222 2368999999887653
No 340
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.07 E-value=0.0076 Score=49.25 Aligned_cols=91 Identities=12% Similarity=0.156 Sum_probs=61.7
Q ss_pred cCCc-EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-------------------------cchhhh
Q psy14086 224 KSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-------------------------LSKDLC 277 (324)
Q Consensus 224 ~~~~-~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-------------------------~~~~~~ 277 (324)
.++. +++.|++.||+.|....+.+.++..++... ++.+.-++++.. .+..++
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~--gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va 104 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL--NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVS 104 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHH
Confidence 3454 567999999999999999999998665434 455555555441 123566
Q ss_pred hhcCCC-------ccceEEEEe-cCeeeee--ec--CCCCHHHHHHHHHhh
Q psy14086 278 NQEGVD-------GFPSIYVYK-NGVRTAE--YN--GSRDLEELYQFILKH 316 (324)
Q Consensus 278 ~~~~i~-------~~P~l~~~~-~g~~~~~--~~--g~~~~~~l~~fi~~~ 316 (324)
+.||+- ..|+++++. +|+.... |. ..++.+++.+.|+..
T Consensus 105 ~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 105 NQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred HHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 778762 579998885 6765432 22 226788999888753
No 341
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.05 E-value=0.009 Score=46.37 Aligned_cols=81 Identities=20% Similarity=0.363 Sum_probs=60.3
Q ss_pred CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc------------------------------------
Q psy14086 99 NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH------------------------------------ 142 (324)
Q Consensus 99 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~------------------------------------ 142 (324)
..++.|+...|++|..+.+.+.++.+.+-+.+++.|...+....
T Consensus 14 ~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (162)
T PF13462_consen 14 ITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQENFE 93 (162)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCHSTS
T ss_pred eEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc
Confidence 35899999999999999999999999983223777776654200
Q ss_pred --------------------------------hhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHh
Q psy14086 143 --------------------------------RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184 (324)
Q Consensus 143 --------------------------------~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~ 184 (324)
...+++.||+++|++++ +|+. +.|..+.++|.+.|++
T Consensus 94 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~---~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 94 NKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY---VVGPYTIEELKELIDK 162 (162)
T ss_dssp SHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE---EETTTSHHHHHHHHHH
T ss_pred hhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE---eCCCCCHHHHHHHHcC
Confidence 34455679999999988 6655 4788899999998864
No 342
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.03 E-value=0.0073 Score=43.02 Aligned_cols=94 Identities=15% Similarity=0.195 Sum_probs=63.9
Q ss_pred eeEecc-cccccccc-CC-cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccce
Q psy14086 211 VVSLTS-ENFNDVIK-SG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287 (324)
Q Consensus 211 v~~l~~-~~~~~~~~-~~-~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~ 287 (324)
++.|+. +.++.++. +. .++|-|+...-+ .....+.++|.. ++. .+.|+... +.++...+++. .|+
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~-~R~--d~~F~~~~-----~~~~~~~~~~~-~~~ 69 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEE-FHP--YIKFFATF-----DSKVAKKLGLK-MNE 69 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHh-hhc--CCEEEEEC-----cHHHHHHcCCC-CCc
Confidence 445533 44888886 44 566667654322 356678888855 444 47776644 56667778774 799
Q ss_pred EEEEec-Ceeeeee-cCCCCHHHHHHHHHhh
Q psy14086 288 IYVYKN-GVRTAEY-NGSRDLEELYQFILKH 316 (324)
Q Consensus 288 l~~~~~-g~~~~~~-~g~~~~~~l~~fi~~~ 316 (324)
+++++. ......| .|..+.+.|.+||..+
T Consensus 70 i~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 70 VDFYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred EEEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 999975 4444568 7888999999999754
No 343
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.03 E-value=0.0092 Score=48.77 Aligned_cols=91 Identities=8% Similarity=0.109 Sum_probs=60.3
Q ss_pred cCCcE-EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-------------------------cchhhh
Q psy14086 224 KSGTV-FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-------------------------LSKDLC 277 (324)
Q Consensus 224 ~~~~~-~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-------------------------~~~~~~ 277 (324)
.++.+ ++.|++.||+.|....+.|.+++.++... ++.++.++++.. .+..++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~--g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia 109 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL--NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVA 109 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHH
Confidence 34544 45889999999999999999999775444 455666665541 023555
Q ss_pred hhcCCC-------ccceEEEEe-cCeeeeee--c--CCCCHHHHHHHHHhh
Q psy14086 278 NQEGVD-------GFPSIYVYK-NGVRTAEY--N--GSRDLEELYQFILKH 316 (324)
Q Consensus 278 ~~~~i~-------~~P~l~~~~-~g~~~~~~--~--g~~~~~~l~~fi~~~ 316 (324)
+.||+- ..|+.+++. +|.....+ . -.++.+++.+.|+..
T Consensus 110 ~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 110 KRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 667752 368887874 67654332 2 226899999988753
No 344
>PRK13189 peroxiredoxin; Provisional
Probab=96.99 E-value=0.0095 Score=48.98 Aligned_cols=91 Identities=11% Similarity=0.181 Sum_probs=59.6
Q ss_pred cCCc-EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-------------------------cchhhh
Q psy14086 224 KSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-------------------------LSKDLC 277 (324)
Q Consensus 224 ~~~~-~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-------------------------~~~~~~ 277 (324)
.++. +++.|++.||+.|....+.+.+++.++... ++.+..++++.. ....++
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~--~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia 111 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL--NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIA 111 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHH
Confidence 3453 555778999999999999999998665433 445555554430 123566
Q ss_pred hhcCCC-------ccceEEEEe-cCeeeeeec----CCCCHHHHHHHHHhh
Q psy14086 278 NQEGVD-------GFPSIYVYK-NGVRTAEYN----GSRDLEELYQFILKH 316 (324)
Q Consensus 278 ~~~~i~-------~~P~l~~~~-~g~~~~~~~----g~~~~~~l~~fi~~~ 316 (324)
+.||+. .+|+.+++. +|....... ..++.+++.+.|...
T Consensus 112 ~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 112 KKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred HHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 777764 468888885 676533322 346788998888754
No 345
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=96.98 E-value=0.015 Score=42.45 Aligned_cols=96 Identities=11% Similarity=0.228 Sum_probs=68.8
Q ss_pred hhHHHHh---cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccce-EEEEeCCe
Q psy14086 89 ESFEKYV---SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPT-LLWIESGK 164 (324)
Q Consensus 89 ~~f~~~~---~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~-~~~~~~g~ 164 (324)
-..++.+ .++.+++.|-..|.+.|.++-..+.+++.+.++ -..++.||.++-+++.+.|.+. -|. +++|-+++
T Consensus 9 ~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~--~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnk 85 (133)
T PF02966_consen 9 WHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN--FAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNK 85 (133)
T ss_dssp HHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTE
T ss_pred chHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc--ceEEEEEEcccchhhhcccccC-CCeEEEEEecCe
Confidence 3455555 334568999999999999999999999999987 7899999999999999999998 775 55554454
Q ss_pred Eee---------eecCC-CCHHHHHHHHHhhhC
Q psy14086 165 KLD---------KFQGS-RTLETLVNYVSKMKG 187 (324)
Q Consensus 165 ~~~---------~~~g~-~~~~~i~~fi~~~~~ 187 (324)
... +..+. .+.+++.+-++....
T Consensus 86 hm~vD~GtgnnnKin~~~~~kqe~iDiie~iyr 118 (133)
T PF02966_consen 86 HMMVDFGTGNNNKINWAFEDKQEFIDIIETIYR 118 (133)
T ss_dssp EEEEESSSSSSSSBCS--SCHHHHHHHHHHHHH
T ss_pred EEEEEecCCCccEEEEEcCcHHHHHHHHHHHHH
Confidence 332 12233 356777777665544
No 346
>KOG3414|consensus
Probab=96.94 E-value=0.019 Score=41.37 Aligned_cols=85 Identities=20% Similarity=0.274 Sum_probs=63.8
Q ss_pred CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCee--ee-----
Q psy14086 226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVR--TA----- 298 (324)
Q Consensus 226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~--~~----- 298 (324)
+.++|-|...|-+.|..+-..+...+.+.. . -..++-+|.++ -+++.+.|++...|++++|=+++- +.
T Consensus 24 rlvViRFGr~~Dp~C~~mD~~L~~i~~~vs-n--fa~Iylvdide--V~~~~~~~~l~~p~tvmfFfn~kHmkiD~gtgd 98 (142)
T KOG3414|consen 24 RLVVIRFGRDWDPTCMKMDELLSSIAEDVS-N--FAVIYLVDIDE--VPDFVKMYELYDPPTVMFFFNNKHMKIDLGTGD 98 (142)
T ss_pred eEEEEEecCCCCchHhhHHHHHHHHHHHHh-h--ceEEEEEecch--hhhhhhhhcccCCceEEEEEcCceEEEeeCCCC
Confidence 579999999999999999999999996643 3 26677788888 789999999999999988854432 11
Q ss_pred --eecCC-CCHHHHHHHHHh
Q psy14086 299 --EYNGS-RDLEELYQFILK 315 (324)
Q Consensus 299 --~~~g~-~~~~~l~~fi~~ 315 (324)
..++. .+.+++.+.++-
T Consensus 99 n~Kin~~~~~kq~~Idiie~ 118 (142)
T KOG3414|consen 99 NNKINFAFEDKQEFIDIIET 118 (142)
T ss_pred CceEEEEeccHHHHHHHHHH
Confidence 12232 356777777664
No 347
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.93 E-value=0.0026 Score=43.17 Aligned_cols=69 Identities=17% Similarity=0.374 Sum_probs=45.6
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc-----hhhhhhCCccccceEEEEeCCeEeeeecCCCCH
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH-----RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTL 175 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~-----~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~ 175 (324)
++.|+++||+.|..+...+.++... +.+..++...+ ..+.+..|..++|.++ -+|+.+ | ..
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~--~~g~~i----g--g~ 67 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK------PAVVELDQHEDGSEIQDYLQELTGQRTVPNVF--IGGKFI----G--GC 67 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC------cEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEEE----c--CH
Confidence 5789999999999999999887653 45556655433 2355567888999863 345432 2 33
Q ss_pred HHHHHHHH
Q psy14086 176 ETLVNYVS 183 (324)
Q Consensus 176 ~~i~~fi~ 183 (324)
+++.+..+
T Consensus 68 ~~~~~~~~ 75 (82)
T cd03419 68 DDLMALHK 75 (82)
T ss_pred HHHHHHHH
Confidence 45555544
No 348
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.93 E-value=0.0043 Score=41.01 Aligned_cols=66 Identities=11% Similarity=0.206 Sum_probs=45.4
Q ss_pred EEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhC---CccccceEEEEeCCeEeeeecCCCCHHHH
Q psy14086 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSF---DIKSYPTLLWIESGKKLDKFQGSRTLETL 178 (324)
Q Consensus 102 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~---~i~~~P~~~~~~~g~~~~~~~g~~~~~~i 178 (324)
.+|..++|++|+.....|.+. .+.|-.+|++.++.....+ |..++|.+++ +|.. .-|.++.+.|
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~---~~~G~~~~~~ 68 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH--------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL---SWSGFRPDKL 68 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc---EEeccCHHHH
Confidence 578899999999988888642 4777777877665544444 8788998754 3322 3445677776
Q ss_pred HH
Q psy14086 179 VN 180 (324)
Q Consensus 179 ~~ 180 (324)
.+
T Consensus 69 ~~ 70 (72)
T TIGR02194 69 KA 70 (72)
T ss_pred Hh
Confidence 55
No 349
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.87 E-value=0.014 Score=44.80 Aligned_cols=29 Identities=31% Similarity=0.572 Sum_probs=25.0
Q ss_pred CEEEEEeCCCCHhHhhHHHHHHHHHHhcC
Q psy14086 99 NHFVKFYAPWCGHCQSLAPVWQELASHFK 127 (324)
Q Consensus 99 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~ 127 (324)
..++.|+.++|++|..+.+.+.++...+.
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 45889999999999999999999877653
No 350
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.86 E-value=0.0099 Score=40.29 Aligned_cols=72 Identities=10% Similarity=0.242 Sum_probs=50.4
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhh---hhcCCCccceEEEEecCeeeeeecCCCC
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLC---NQEGVDGFPSIYVYKNGVRTAEYNGSRD 305 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~---~~~~i~~~P~l~~~~~g~~~~~~~g~~~ 305 (324)
+..|..+||++|...+..|.+. ++.|-.+|++. +++.. ...+...+|.+++ ++.. ..| .+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~---------gI~~~~idi~~--~~~~~~~~~~~g~~~vPvv~i--~~~~---~~G-f~ 65 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR---------GFDFEMINVDR--VPEAAETLRAQGFRQLPVVIA--GDLS---WSG-FR 65 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC---------CCceEEEECCC--CHHHHHHHHHcCCCCcCEEEE--CCEE---Eec-CC
Confidence 5688999999999988777442 47788888877 45432 3356778999954 4432 234 57
Q ss_pred HHHHHHHHHhhc
Q psy14086 306 LEELYQFILKHK 317 (324)
Q Consensus 306 ~~~l~~fi~~~~ 317 (324)
.+.|.+.+....
T Consensus 66 ~~~l~~~~~~~~ 77 (81)
T PRK10329 66 PDMINRLHPAPH 77 (81)
T ss_pred HHHHHHHHHhhh
Confidence 899998887654
No 351
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.85 E-value=0.02 Score=38.77 Aligned_cols=72 Identities=6% Similarity=0.129 Sum_probs=51.2
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhh---hhCCccccceEEEEeCCeEeeeecCCCCHHH
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSIC---QSFDIKSYPTLLWIESGKKLDKFQGSRTLET 177 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~---~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~ 177 (324)
+.+|..+||++|......|.+ + .+.|-.+|++.++... +..|...+|.+++ ++.. .+.+..+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~---gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~~----~~Gf~~~~ 68 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----R---GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDLS----WSGFRPDM 68 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----C---CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCEE----EecCCHHH
Confidence 678999999999998877754 1 4788888887665533 3347778998864 3322 33568888
Q ss_pred HHHHHHhhh
Q psy14086 178 LVNYVSKMK 186 (324)
Q Consensus 178 i~~fi~~~~ 186 (324)
|.+.+....
T Consensus 69 l~~~~~~~~ 77 (81)
T PRK10329 69 INRLHPAPH 77 (81)
T ss_pred HHHHHHhhh
Confidence 988887654
No 352
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.80 E-value=0.0026 Score=42.10 Aligned_cols=66 Identities=18% Similarity=0.337 Sum_probs=44.0
Q ss_pred EEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhh---cCCCccceEEEEecCeeeeeecCCCCH
Q psy14086 230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQ---EGVDGFPSIYVYKNGVRTAEYNGSRDL 306 (324)
Q Consensus 230 v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~---~~i~~~P~l~~~~~g~~~~~~~g~~~~ 306 (324)
..|..++|+.|+..+..|++. ++.|..+|++. +++..+. .|..++|.+++ +|+.. . |..+.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~~di~~--~~~~~~~~~~~g~~~vP~v~~--~g~~~--~-~G~~~ 65 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH---------GIAFEEINIDE--QPEAIDYVKAQGFRQVPVIVA--DGDLS--W-SGFRP 65 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC---------CCceEEEECCC--CHHHHHHHHHcCCcccCEEEE--CCCcE--E-eccCH
Confidence 578889999999998887642 46677778776 4444433 47778999844 44322 2 33566
Q ss_pred HHHHH
Q psy14086 307 EELYQ 311 (324)
Q Consensus 307 ~~l~~ 311 (324)
+.|.+
T Consensus 66 ~~~~~ 70 (72)
T TIGR02194 66 DKLKA 70 (72)
T ss_pred HHHHh
Confidence 66654
No 353
>KOG3171|consensus
Probab=96.79 E-value=0.0054 Score=48.45 Aligned_cols=101 Identities=17% Similarity=0.302 Sum_probs=76.3
Q ss_pred CCeeEecccc-ccccccCC----cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCC
Q psy14086 209 EPVVSLTSEN-FNDVIKSG----TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD 283 (324)
Q Consensus 209 ~~v~~l~~~~-~~~~~~~~----~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~ 283 (324)
..|.+++... |.+.+... ..+|.+|-+.-..|.++-..+.-||.+ +. .+.|.++-++. .....+|...
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAe-yP---~vKFckikss~---~gas~~F~~n 210 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAE-YP---IVKFCKIKSSN---TGASDRFSLN 210 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhcc-CC---ceeEEEeeecc---ccchhhhccc
Confidence 5688887644 77777543 478889999999999999999999866 33 48999988765 4556789999
Q ss_pred ccceEEEEecCeeeeee------cC-CCCHHHHHHHHHhh
Q psy14086 284 GFPSIYVYKNGVRTAEY------NG-SRDLEELYQFILKH 316 (324)
Q Consensus 284 ~~P~l~~~~~g~~~~~~------~g-~~~~~~l~~fi~~~ 316 (324)
.+|+|.+|++|+-+.-| -| .....++..||+.+
T Consensus 211 ~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 211 VLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred CCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 99999999999764321 12 35567888888865
No 354
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=96.78 E-value=0.015 Score=46.98 Aligned_cols=89 Identities=15% Similarity=0.259 Sum_probs=59.0
Q ss_pred CCCEEEEEeC-CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc----------------------------chhhhh
Q psy14086 97 LGNHFVKFYA-PWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----------------------------HRSICQ 147 (324)
Q Consensus 97 ~~~~~v~f~~-~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~----------------------------~~~~~~ 147 (324)
.+.++|.||. .||+.|....+.+.+++.+|... ++.++.|.++. ...+++
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 4466788885 77999988889999999998753 45555554431 235677
Q ss_pred hCCcc------ccceEEEEeC-CeEeeeecC----CCCHHHHHHHHHhhh
Q psy14086 148 SFDIK------SYPTLLWIES-GKKLDKFQG----SRTLETLVNYVSKMK 186 (324)
Q Consensus 148 ~~~i~------~~P~~~~~~~-g~~~~~~~g----~~~~~~i~~fi~~~~ 186 (324)
.||+. .+|+.+++++ |.....+.+ .++.+++.+.|...-
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence 78875 3688888886 543333322 356667777666543
No 355
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.76 E-value=0.004 Score=40.70 Aligned_cols=56 Identities=29% Similarity=0.449 Sum_probs=38.4
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchh----hhhhcCCCccceEEEEecCeee
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKD----LCNQEGVDGFPSIYVYKNGVRT 297 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~i~~~P~l~~~~~g~~~ 297 (324)
++.|+++||++|+.+...+.+.. +.+..+|... +.+ +.+..+...+|++ |.+|+.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~--~~~~~~~l~~~~~~~~~P~~--~~~~~~i 61 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILE--DGELREELKELSGWPTVPQI--FINGEFI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCC--CHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 56889999999999988877664 4566677766 332 3334566778877 4466544
No 356
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.76 E-value=0.0023 Score=43.16 Aligned_cols=55 Identities=18% Similarity=0.441 Sum_probs=37.2
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhh----hhhcCCCccceEEEEecCee
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDL----CNQEGVDGFPSIYVYKNGVR 296 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~----~~~~~i~~~P~l~~~~~g~~ 296 (324)
++.|+.+||++|......|++.. +.+..+|++. ++.. .+..+..++|++ |-+|+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~---------i~~~~~di~~--~~~~~~~~~~~~g~~~vP~i--~i~g~~ 59 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKG---------VTFTEIRVDG--DPALRDEMMQRSGRRTVPQI--FIGDVH 59 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcC---------CCcEEEEecC--CHHHHHHHHHHhCCCCcCEE--EECCEE
Confidence 36788999999999998887542 4455566655 3333 333467789998 446643
No 357
>PHA03050 glutaredoxin; Provisional
Probab=96.75 E-value=0.0057 Score=43.96 Aligned_cols=65 Identities=11% Similarity=0.176 Sum_probs=40.8
Q ss_pred HHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-c----hhhhhhCCccccceEEE
Q psy14086 91 FEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-H----RSICQSFDIKSYPTLLW 159 (324)
Q Consensus 91 f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-~----~~~~~~~~i~~~P~~~~ 159 (324)
.++.+.++. ++.|..+||++|......|.+..-... .+....+|-.. . ..+.+.-|-+++|.+++
T Consensus 6 v~~~i~~~~-V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 6 VQQRLANNK-VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred HHHHhccCC-EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 344444444 778999999999999888877654322 23344443211 1 24555568889998854
No 358
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.73 E-value=0.011 Score=39.03 Aligned_cols=68 Identities=21% Similarity=0.447 Sum_probs=44.7
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc-chhhhhhcCCCccceEEEEecCeeeeeecCCCCHH
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL-SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLE 307 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~ 307 (324)
++.|..+||+.|...+..|++. ++.+..+|.+... ...+....+...+|.+ |-+|+.+ |. .+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~---------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i----gg--~~ 65 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN---------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI----GG--SD 65 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc---------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE----eC--HH
Confidence 6789999999999998777643 3556667766521 1223333577889998 5566533 32 57
Q ss_pred HHHHHH
Q psy14086 308 ELYQFI 313 (324)
Q Consensus 308 ~l~~fi 313 (324)
+|.+|+
T Consensus 66 ~l~~~l 71 (72)
T cd03029 66 DLEKYF 71 (72)
T ss_pred HHHHHh
Confidence 777765
No 359
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=96.71 E-value=0.027 Score=45.54 Aligned_cols=89 Identities=12% Similarity=0.238 Sum_probs=58.9
Q ss_pred CCcEEEEEeC-CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------------cchhhh
Q psy14086 225 SGTVFIKFFA-PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------------LSKDLC 277 (324)
Q Consensus 225 ~~~~~v~f~~-~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------------~~~~~~ 277 (324)
++.++|+||. .||..|....+.+.+++.++... ++.+..|+++.. ....++
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~--g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia 113 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL--NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIA 113 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHH
Confidence 5678889995 77999999888898888665443 566666666541 123566
Q ss_pred hhcCCC------ccceEEEEe-cCeeeeeecC----CCCHHHHHHHHHh
Q psy14086 278 NQEGVD------GFPSIYVYK-NGVRTAEYNG----SRDLEELYQFILK 315 (324)
Q Consensus 278 ~~~~i~------~~P~l~~~~-~g~~~~~~~g----~~~~~~l~~fi~~ 315 (324)
+.||+. .+|+.+++. +|+......+ .++.+++.+.|..
T Consensus 114 ~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a 162 (199)
T PTZ00253 114 RSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEA 162 (199)
T ss_pred HHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHh
Confidence 777874 368888885 6654433322 2567777777754
No 360
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.70 E-value=0.019 Score=37.85 Aligned_cols=66 Identities=21% Similarity=0.335 Sum_probs=44.0
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch---hhhhhCCccccceEEEEeCCeEeeeecCCCCHHH
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR---SICQSFDIKSYPTLLWIESGKKLDKFQGSRTLET 177 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~---~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~ 177 (324)
+++|..++|+.|......|++. ++.+..+|++.+. .+.+..|..++|.++ -+|+.+ | ..++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~i----g--g~~~ 66 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGELI----G--GSDD 66 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEEE----e--CHHH
Confidence 6789999999999988777742 3555566655443 233445888999874 345432 3 3577
Q ss_pred HHHHH
Q psy14086 178 LVNYV 182 (324)
Q Consensus 178 i~~fi 182 (324)
|.+|+
T Consensus 67 l~~~l 71 (72)
T cd03029 67 LEKYF 71 (72)
T ss_pred HHHHh
Confidence 77775
No 361
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.66 E-value=0.016 Score=48.52 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=54.5
Q ss_pred CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEe-----cCC------------------------------
Q psy14086 226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVD-----CTQ------------------------------ 270 (324)
Q Consensus 226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id-----~~~------------------------------ 270 (324)
+.+++.|..+.|++|+++.+.+.++... . ++.+-.+- .+.
T Consensus 118 k~~I~vFtDp~CpyC~kl~~~l~~~~~~---g--~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~ 192 (251)
T PRK11657 118 PRIVYVFADPNCPYCKQFWQQARPWVDS---G--KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLK 192 (251)
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHhhc---C--ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCC
Confidence 3589999999999999998877665421 1 12222221 010
Q ss_pred -------------ccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHH
Q psy14086 271 -------------ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFIL 314 (324)
Q Consensus 271 -------------~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~ 314 (324)
.++..+...+|+++.|++++-.....+....|..+.+.|.+++.
T Consensus 193 ~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 193 PPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 01123566789999999987653234445689888898888764
No 362
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.62 E-value=0.017 Score=41.23 Aligned_cols=87 Identities=15% Similarity=0.318 Sum_probs=58.7
Q ss_pred ccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEec--
Q psy14086 217 ENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKN-- 293 (324)
Q Consensus 217 ~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~-- 293 (324)
+.+++++.. +.++|.|+...-. .....+.++|.. ++. .+.|+... +.++.+.+++ .|++++|+.
T Consensus 9 ~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~-~R~--d~~F~~~~-----~~~~~~~~~~--~~~ivl~~p~~ 75 (104)
T cd03069 9 AEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADT-LRE--SFRFAHTS-----DKQLLEKYGY--GEGVVLFRPPR 75 (104)
T ss_pred HHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHh-hhh--cCEEEEEC-----hHHHHHhcCC--CCceEEEechh
Confidence 346666644 4577777754322 366788888855 444 47787655 5667788888 688888832
Q ss_pred -----CeeeeeecCCCCHHHHHHHHHhh
Q psy14086 294 -----GVRTAEYNGSRDLEELYQFILKH 316 (324)
Q Consensus 294 -----g~~~~~~~g~~~~~~l~~fi~~~ 316 (324)
......|.|..+.+.|.+||..+
T Consensus 76 ~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 76 LSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hhcccCcccccccCcCCHHHHHHHHHhh
Confidence 12234689998999999999764
No 363
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.59 E-value=0.0057 Score=40.67 Aligned_cols=56 Identities=21% Similarity=0.390 Sum_probs=38.1
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhh----hhhcCCC-ccceEEEEecCeee
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDL----CNQEGVD-GFPSIYVYKNGVRT 297 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~----~~~~~i~-~~P~l~~~~~g~~~ 297 (324)
++.|..++|+.|......|++. ++.+..+|++. +++. .+..+.. ++|.+ |-+|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~i~i~~--~~~~~~~~~~~~~~~~~vP~v--~i~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK---------GVDYEEIDVDG--DPALREEMINRSGGRRTVPQI--FIGDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC---------CCcEEEEECCC--CHHHHHHHHHHhCCCCccCEE--EECCEEE
Confidence 5688899999999998877653 35666777766 4333 3334655 89987 4566443
No 364
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.58 E-value=0.0063 Score=39.74 Aligned_cols=55 Identities=16% Similarity=0.322 Sum_probs=37.5
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh----hhhhCCccccceEEEEeCCeE
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS----ICQSFDIKSYPTLLWIESGKK 165 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~~~~g~~ 165 (324)
++.|.++||++|+.....|.+.. +.+..+|...+.. +.+..+..++|++++ +|+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~ 60 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEF 60 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEE
Confidence 57899999999999988887654 4555666654433 344457678887643 5543
No 365
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=96.57 E-value=0.1 Score=36.60 Aligned_cols=104 Identities=19% Similarity=0.188 Sum_probs=77.3
Q ss_pred ceEcChhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhh----hCCcc-cc
Q psy14086 83 LVELTEESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQ----SFDIK-SY 154 (324)
Q Consensus 83 ~~~l~~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~----~~~i~-~~ 154 (324)
++.++.++..+... ++..++.|--+..+.-.++.+.+.++|+.+..+.++.|+-||-+..+-+.. .|+|. .-
T Consensus 3 lrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~ 82 (120)
T cd03074 3 LRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFR 82 (120)
T ss_pred hhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCC
Confidence 45566666665552 356789999999999999999999999999988899999999998865544 46776 46
Q ss_pred ceEEEEeCCe---EeeeecC---CCCHHHHHHHHHhhh
Q psy14086 155 PTLLWIESGK---KLDKFQG---SRTLETLVNYVSKMK 186 (324)
Q Consensus 155 P~~~~~~~g~---~~~~~~g---~~~~~~i~~fi~~~~ 186 (324)
|.|-+.+-.. ......+ ..+++.|..||.+.+
T Consensus 83 PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 83 PQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred CceeeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence 9888775421 2222222 268999999998753
No 366
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.51 E-value=0.0052 Score=43.48 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=36.8
Q ss_pred EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccc-hh----hhhhcCCCccceEEEEecCeee
Q psy14086 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS-KD----LCNQEGVDGFPSIYVYKNGVRT 297 (324)
Q Consensus 228 ~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~-~~----~~~~~~i~~~P~l~~~~~g~~~ 297 (324)
-++.|..+||++|......|.++. +.+..+|++.... .+ +.+..+...+|.+ |-+|+.+
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~~---------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~i 72 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTLG---------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLV 72 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcC---------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEE
Confidence 366789999999999988776553 3344555554101 22 2333466789997 5666544
No 367
>PHA03050 glutaredoxin; Provisional
Probab=96.48 E-value=0.0062 Score=43.78 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=39.3
Q ss_pred EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-----cchhhhhhcCCCccceEEEEecCeee
Q psy14086 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-----LSKDLCNQEGVDGFPSIYVYKNGVRT 297 (324)
Q Consensus 228 ~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-----~~~~~~~~~~i~~~P~l~~~~~g~~~ 297 (324)
-++.|..+||++|+.....|.+...+ . -.|..+|.+.. ....+.+..|...+|.+ |-+|+-+
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~---~---~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g~~i 80 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFK---R---GAYEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGKTSI 80 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCC---c---CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECCEEE
Confidence 47789999999999999888776521 0 12444444431 01345555677889999 4455443
No 368
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.48 E-value=0.0074 Score=39.95 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=39.1
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccch----hhhhhcCCCccceEEEEecCee
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK----DLCNQEGVDGFPSIYVYKNGVR 296 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~i~~~P~l~~~~~g~~ 296 (324)
++.|+.+||+.|+.....|++. ++.+..+|+.. ++ ++.+..+...+|.+ |-+|+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~---------gi~~~~~di~~--~~~~~~el~~~~g~~~vP~v--~i~~~~ 61 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK---------GLPYVEINIDI--FPERKAELEERTGSSVVPQI--FFNEKL 61 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC---------CCceEEEECCC--CHHHHHHHHHHhCCCCcCEE--EECCEE
Confidence 5678899999999998877753 35677777776 33 34455566788988 445543
No 369
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.43 E-value=0.012 Score=39.05 Aligned_cols=50 Identities=14% Similarity=0.292 Sum_probs=35.3
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhh----hhhCCcc-ccceEE
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSI----CQSFDIK-SYPTLL 158 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~----~~~~~i~-~~P~~~ 158 (324)
+++|..++|++|......|++. ++.+-.+|++.++.. .+..|.. ++|.++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 5689999999999988888762 356666676655433 3345666 899775
No 370
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.43 E-value=0.0051 Score=41.44 Aligned_cols=51 Identities=14% Similarity=0.352 Sum_probs=34.8
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhh----hhhCCccccceEEE
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSI----CQSFDIKSYPTLLW 159 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~----~~~~~i~~~P~~~~ 159 (324)
+++|..++|++|......|++. ++.+-.+|++.++.. .+..|..++|++++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i 55 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI 55 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence 3678999999999999888753 244555555554433 33447778998744
No 371
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=96.39 E-value=0.066 Score=37.52 Aligned_cols=104 Identities=18% Similarity=0.132 Sum_probs=73.0
Q ss_pred eeEeccccccccccC---CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhh----hhhcCCC
Q psy14086 211 VVSLTSENFNDVIKS---GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDL----CNQEGVD 283 (324)
Q Consensus 211 v~~l~~~~~~~~~~~---~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~----~~~~~i~ 283 (324)
+..++..++.+...+ +..++.|-.+..+...++.+++.++|++ ...++++.|++||-+. .+-+ .+.|+|.
T Consensus 3 lrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~-nt~np~LsiIWIDPD~--FPllv~yWektF~ID 79 (120)
T cd03074 3 LRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARD-NTDNPDLSIIWIDPDD--FPLLVPYWEKTFGID 79 (120)
T ss_pred hhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHh-cCcCCCceEEEECCcc--CchhhHHHHhhcCcc
Confidence 345556665555533 4688899988888999999999999976 5566789999999877 5544 3457765
Q ss_pred -ccceEEEEe--cCe-eeeeecCC---CCHHHHHHHHHhhc
Q psy14086 284 -GFPSIYVYK--NGV-RTAEYNGS---RDLEELYQFILKHK 317 (324)
Q Consensus 284 -~~P~l~~~~--~g~-~~~~~~g~---~~~~~l~~fi~~~~ 317 (324)
.-|.|-+.. +.. ......+. -+.++|.+||.+.+
T Consensus 80 l~~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 80 LFRPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred cCCCceeeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence 458887774 222 22223333 57899999998754
No 372
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.38 E-value=0.015 Score=40.89 Aligned_cols=63 Identities=14% Similarity=0.227 Sum_probs=40.9
Q ss_pred hhHHHHhcCCCEEEEEe----CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh----hhhhCCccccceEEE
Q psy14086 89 ESFEKYVSLGNHFVKFY----APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS----ICQSFDIKSYPTLLW 159 (324)
Q Consensus 89 ~~f~~~~~~~~~~v~f~----~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~ 159 (324)
+...+++.+++++|+-. .+||++|......|.+.. +.+..+|+..++. +.+..|-..+|.+++
T Consensus 3 ~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~--------i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 3 ERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACG--------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred HHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcC--------CCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 44556666766655433 289999999888887742 5566667655443 334456678897754
No 373
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.35 E-value=0.073 Score=41.20 Aligned_cols=84 Identities=25% Similarity=0.389 Sum_probs=59.8
Q ss_pred CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-----------------c----------------
Q psy14086 226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-----------------L---------------- 272 (324)
Q Consensus 226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-----------------~---------------- 272 (324)
...++.|++..|++|..+.+.+.++..+ +-...++.|...+.... .
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~~~~~~~-~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEELEKLLKK-YIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQEN 91 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHH-HTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCHS
T ss_pred CeEEEEEECCCCHhHHHHHHHHhhhhhh-ccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence 4689999999999999999999888755 42233788888776320 0
Q ss_pred ---------------------------------chhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHh
Q psy14086 273 ---------------------------------SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILK 315 (324)
Q Consensus 273 ---------------------------------~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~ 315 (324)
........+|+++|++++ +|+. +.|..+.+++.+.|++
T Consensus 92 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~---~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 92 FENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY---VVGPYTIEELKELIDK 162 (162)
T ss_dssp TSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE---EETTTSHHHHHHHHHH
T ss_pred cchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE---eCCCCCHHHHHHHHcC
Confidence 013334568999999977 6655 4778899999998864
No 374
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.35 E-value=0.016 Score=38.38 Aligned_cols=51 Identities=10% Similarity=0.237 Sum_probs=37.6
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh----hhhhCCccccceEEE
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS----ICQSFDIKSYPTLLW 159 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~ 159 (324)
++.|..++|+.|+.....|++. .+.+..+|+..++. +.+..+-..+|.+++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 6789999999999988888762 46677777776543 555557678897743
No 375
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.33 E-value=0.0078 Score=42.55 Aligned_cols=50 Identities=16% Similarity=0.233 Sum_probs=32.8
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch-------hhhhhCCccccceEE
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR-------SICQSFDIKSYPTLL 158 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~-------~~~~~~~i~~~P~~~ 158 (324)
++.|..+||++|.+....|.+.. +.+..+|++..+ .+.+..|.+++|.++
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~--------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf 66 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG--------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF 66 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE
Confidence 67799999999999888776542 334444444332 233334677899874
No 376
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.32 E-value=0.043 Score=43.28 Aligned_cols=37 Identities=19% Similarity=0.502 Sum_probs=30.6
Q ss_pred CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEE
Q psy14086 97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIA 135 (324)
Q Consensus 97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~ 135 (324)
....++.|+...|++|..+.+.+..+..++.+ ++.+.
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~v~~~ 51 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK--DVKFE 51 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHHHHhCCC--CceEE
Confidence 44569999999999999999999999998865 44444
No 377
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=96.27 E-value=0.045 Score=44.66 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=46.7
Q ss_pred CCCCCCCceEcChhh---HHHHh-cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEec
Q psy14086 76 KPIVNEGLVELTEES---FEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID 138 (324)
Q Consensus 76 ~~~~~~~~~~l~~~~---f~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd 138 (324)
...+...+..++.+. +-++. .+.|.++.|-+-.|++...-...|++++++|.+ .+.|..|-
T Consensus 77 ~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d--~adFl~VY 141 (237)
T PF00837_consen 77 GPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD--VADFLIVY 141 (237)
T ss_pred CCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh--hhheehhh
Confidence 456677788887766 34444 455889999999999999999999999999987 44455443
No 378
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.27 E-value=0.01 Score=41.81 Aligned_cols=65 Identities=20% Similarity=0.368 Sum_probs=41.6
Q ss_pred ccccccCCcEEEEEeC----CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchh----hhhhcCCCccceEEE
Q psy14086 219 FNDVIKSGTVFIKFFA----PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKD----LCNQEGVDGFPSIYV 290 (324)
Q Consensus 219 ~~~~~~~~~~~v~f~~----~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~i~~~P~l~~ 290 (324)
..+.+.+++++|+-.. +||++|......|.+.. +.|..+|... +++ +.+..|...+|.+
T Consensus 5 v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~---------i~~~~~di~~--~~~~~~~l~~~tg~~tvP~v-- 71 (97)
T TIGR00365 5 IKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACG---------VPFAYVNVLE--DPEIRQGIKEYSNWPTIPQL-- 71 (97)
T ss_pred HHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcC---------CCEEEEECCC--CHHHHHHHHHHhCCCCCCEE--
Confidence 3445556666665542 89999999988876653 4456677755 343 3344566688888
Q ss_pred EecCee
Q psy14086 291 YKNGVR 296 (324)
Q Consensus 291 ~~~g~~ 296 (324)
|-+|+-
T Consensus 72 fi~g~~ 77 (97)
T TIGR00365 72 YVKGEF 77 (97)
T ss_pred EECCEE
Confidence 455643
No 379
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.25 E-value=0.024 Score=40.09 Aligned_cols=90 Identities=18% Similarity=0.242 Sum_probs=58.5
Q ss_pred ccccccccC---CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC--ccchhhhhhcCCC-ccceEEE
Q psy14086 217 ENFNDVIKS---GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ--ELSKDLCNQEGVD-GFPSIYV 290 (324)
Q Consensus 217 ~~~~~~~~~---~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~--~~~~~~~~~~~i~-~~P~l~~ 290 (324)
+.++++++. ++++|+=.++.|+-+......|++.... ... .+.++.+|.-. +-.+.++++|||. .-|-+++
T Consensus 8 eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~-~~~--~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~il 84 (105)
T PF11009_consen 8 EQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEE-SPD--EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVIL 84 (105)
T ss_dssp HHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHH-HT------EEEEEGGGGHHHHHHHHHHHT----SSEEEE
T ss_pred HHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhc-CCc--cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEE
Confidence 457777643 5788877889999999999999888844 333 37888888765 2245778899997 6899999
Q ss_pred EecCeeeeeec-CCCCHHHH
Q psy14086 291 YKNGVRTAEYN-GSRDLEEL 309 (324)
Q Consensus 291 ~~~g~~~~~~~-g~~~~~~l 309 (324)
+++|+.+..-. +..+.+.|
T Consensus 85 i~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 85 IKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EETTEEEEEEEGGG-SHHHH
T ss_pred EECCEEEEECccccCCHHhc
Confidence 99998864322 34666655
No 380
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.19 E-value=0.0083 Score=41.61 Aligned_cols=63 Identities=24% Similarity=0.474 Sum_probs=40.5
Q ss_pred ccccCCcEEEEEeC----CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccch----hhhhhcCCCccceEEEEe
Q psy14086 221 DVIKSGTVFIKFFA----PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK----DLCNQEGVDGFPSIYVYK 292 (324)
Q Consensus 221 ~~~~~~~~~v~f~~----~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~i~~~P~l~~~~ 292 (324)
+.+.+++++|+-.+ +||++|......|++.. +.|..+|... ++ .+.+..|...+|.+ |-
T Consensus 3 ~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~---------i~y~~idv~~--~~~~~~~l~~~~g~~tvP~v--fi 69 (90)
T cd03028 3 KLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLG---------VDFGTFDILE--DEEVRQGLKEYSNWPTFPQL--YV 69 (90)
T ss_pred hhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC---------CCeEEEEcCC--CHHHHHHHHHHhCCCCCCEE--EE
Confidence 45556666665443 79999999887776653 4566666655 33 33444577789998 45
Q ss_pred cCee
Q psy14086 293 NGVR 296 (324)
Q Consensus 293 ~g~~ 296 (324)
+|+.
T Consensus 70 ~g~~ 73 (90)
T cd03028 70 NGEL 73 (90)
T ss_pred CCEE
Confidence 6643
No 381
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.18 E-value=0.022 Score=39.57 Aligned_cols=59 Identities=17% Similarity=0.357 Sum_probs=43.5
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc--c------------------------------chhhhhh
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT--Q------------------------------HRSICQS 148 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~--~------------------------------~~~~~~~ 148 (324)
+..|+.+.|+.|..+.+.++++.....+ ++.+...... . +...++.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG--GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARA 78 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC--cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 3679999999999999999999866655 5555544332 1 1345677
Q ss_pred CCccccceEEEEe
Q psy14086 149 FDIKSYPTLLWIE 161 (324)
Q Consensus 149 ~~i~~~P~~~~~~ 161 (324)
+|+.++|++++..
T Consensus 79 ~g~~g~Pt~v~~~ 91 (98)
T cd02972 79 LGVTGTPTFVVNG 91 (98)
T ss_pred cCCCCCCEEEECC
Confidence 8999999998754
No 382
>KOG3171|consensus
Probab=96.13 E-value=0.016 Score=45.85 Aligned_cols=100 Identities=20% Similarity=0.340 Sum_probs=77.1
Q ss_pred ceEcC-hhhHHHHhcCC----CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceE
Q psy14086 83 LVELT-EESFEKYVSLG----NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTL 157 (324)
Q Consensus 83 ~~~l~-~~~f~~~~~~~----~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~ 157 (324)
|.+++ .+.|...+.+. ..+|..|-+....|..+...+.=||..|.- +.|.++-.+ +.....+|..+.+|++
T Consensus 140 V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~---vKFckikss-~~gas~~F~~n~lP~L 215 (273)
T KOG3171|consen 140 VYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI---VKFCKIKSS-NTGASDRFSLNVLPTL 215 (273)
T ss_pred EEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc---eeEEEeeec-cccchhhhcccCCceE
Confidence 55554 45677776443 247999999999999999999999999984 999998654 3456788999999999
Q ss_pred EEEeCCeEeeeec-------CCCCHHHHHHHHHhhh
Q psy14086 158 LWIESGKKLDKFQ-------GSRTLETLVNYVSKMK 186 (324)
Q Consensus 158 ~~~~~g~~~~~~~-------g~~~~~~i~~fi~~~~ 186 (324)
.+|++|+.+..|. ..+.+.++..|++.+-
T Consensus 216 liYkgGeLIgNFv~va~qlgedffa~dle~FL~e~g 251 (273)
T KOG3171|consen 216 LIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYG 251 (273)
T ss_pred EEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcC
Confidence 9999997654332 2366778888888764
No 383
>KOG3170|consensus
Probab=96.08 E-value=0.069 Score=41.95 Aligned_cols=99 Identities=24% Similarity=0.356 Sum_probs=72.7
Q ss_pred CCceEcChhhHHHHh---cCCCE-EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccce
Q psy14086 81 EGLVELTEESFEKYV---SLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPT 156 (324)
Q Consensus 81 ~~~~~l~~~~f~~~~---~~~~~-~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~ 156 (324)
..|..++...|-+.+ ..+.| +|..|...-+.|.-+...|+.+|.+|+. ++|+++=.+.. + .-|-=...||
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~---iKFVki~at~c--I-pNYPe~nlPT 164 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ---IKFVKIPATTC--I-PNYPESNLPT 164 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc---ceEEecccccc--c-CCCcccCCCe
Confidence 358888888887666 34444 7999999999999999999999999986 88888754421 1 1233356899
Q ss_pred EEEEeCCeEeeeecC------C-CCHHHHHHHHHhh
Q psy14086 157 LLWIESGKKLDKFQG------S-RTLETLVNYVSKM 185 (324)
Q Consensus 157 ~~~~~~g~~~~~~~g------~-~~~~~i~~fi~~~ 185 (324)
+++|..|.....+.| . .+.+++..++-+.
T Consensus 165 l~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 165 LLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred EEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 999988865444443 2 5788888877653
No 384
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=95.95 E-value=0.071 Score=43.36 Aligned_cols=38 Identities=16% Similarity=0.512 Sum_probs=29.0
Q ss_pred CCCEEEEEeCCCCHhHhhHHHHH---HHHHHhcCCCCCeEEEE
Q psy14086 97 LGNHFVKFYAPWCGHCQSLAPVW---QELASHFKTEEDVSIAK 136 (324)
Q Consensus 97 ~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~i~~~~ 136 (324)
.++.++.|+.-.|++|..+.+.+ ..+.+.+.+ ++.|..
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~--~v~~~~ 77 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE--GTKMTK 77 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC--CCeEEE
Confidence 34569999999999999999866 777888766 444443
No 385
>PRK10824 glutaredoxin-4; Provisional
Probab=95.92 E-value=0.021 Score=41.41 Aligned_cols=63 Identities=14% Similarity=0.252 Sum_probs=38.5
Q ss_pred hhHHHHhcCCCEEEEEeC----CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh----hhhhCCccccceEEE
Q psy14086 89 ESFEKYVSLGNHFVKFYA----PWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS----ICQSFDIKSYPTLLW 159 (324)
Q Consensus 89 ~~f~~~~~~~~~~v~f~~----~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~ 159 (324)
+..++.+.+++++|+--. |+|++|.+....|..+. +.+..+|...+.. +.+.-|-+.+|.+++
T Consensus 6 ~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~--------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 6 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACG--------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred HHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcC--------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 345566667666554333 69999999998887764 2333344444433 333346667887765
No 386
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.86 E-value=0.028 Score=38.93 Aligned_cols=62 Identities=16% Similarity=0.372 Sum_probs=38.5
Q ss_pred HHhcCCCEEEEEeC----CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh----hhhhCCccccceEEEEeCCe
Q psy14086 93 KYVSLGNHFVKFYA----PWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS----ICQSFDIKSYPTLLWIESGK 164 (324)
Q Consensus 93 ~~~~~~~~~v~f~~----~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~~~~g~ 164 (324)
+++.+++++|+-.. +||++|......|++.. +.|..+|+..+.. +.+..|-+++|.+++ +|+
T Consensus 3 ~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~--------i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~ 72 (90)
T cd03028 3 KLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLG--------VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGE 72 (90)
T ss_pred hhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC--------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCE
Confidence 44556665554332 79999999888887653 4455556554443 344457778998743 553
No 387
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.021 Score=38.58 Aligned_cols=56 Identities=20% Similarity=0.459 Sum_probs=36.6
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccc---hhhhhhc-CCCccceEEEEecCe
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS---KDLCNQE-GVDGFPSIYVYKNGV 295 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~---~~~~~~~-~i~~~P~l~~~~~g~ 295 (324)
+++|..++|++|+.....|.+. ++.|..++.+..+. .+..+.- |..++|.|+ -+|+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~---------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~--i~~~ 62 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK---------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIF--IGGK 62 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc---------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEE--ECCE
Confidence 5788999999999998777733 35566666655211 1223333 678999984 4554
No 388
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.014 Score=39.48 Aligned_cols=51 Identities=14% Similarity=0.317 Sum_probs=35.4
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch-----hhhhhC-CccccceEEE
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR-----SICQSF-DIKSYPTLLW 159 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~-----~~~~~~-~i~~~P~~~~ 159 (324)
+++|..++|++|......|.+. .+.|..+|.+... ...++. |.+++|.|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~--------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK--------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc--------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 5789999999999988888732 3555555544332 344444 7889998776
No 389
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.66 E-value=0.053 Score=37.61 Aligned_cols=61 Identities=26% Similarity=0.410 Sum_probs=42.1
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc------------------------------chhhhh
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL------------------------------SKDLCN 278 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~------------------------------~~~~~~ 278 (324)
++.|+++.|+.|..+.+.+.++. ..... ++.+......... +.....
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLL-YADDG--GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALAR 77 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHH-hhcCC--cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 46899999999999999999986 32334 4555555432210 123456
Q ss_pred hcCCCccceEEEEe
Q psy14086 279 QEGVDGFPSIYVYK 292 (324)
Q Consensus 279 ~~~i~~~P~l~~~~ 292 (324)
..|+.++|++++..
T Consensus 78 ~~g~~g~Pt~v~~~ 91 (98)
T cd02972 78 ALGVTGTPTFVVNG 91 (98)
T ss_pred HcCCCCCCEEEECC
Confidence 78999999997754
No 390
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=95.65 E-value=0.53 Score=34.59 Aligned_cols=85 Identities=20% Similarity=0.247 Sum_probs=60.4
Q ss_pred CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccce-EEEEecCeeeee----
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS-IYVYKNGVRTAE---- 299 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~-l~~~~~g~~~~~---- 299 (324)
++.++|-|...|-+.|..+-..+.++|.+ ... -..++.+|.++ -+++.+.|.+. -|. +.+|-.++....
T Consensus 20 drvvViRFG~d~d~~Cm~mDeiL~~~a~~-v~~--~a~IY~vDi~~--Vpdfn~~yel~-dP~tvmFF~rnkhm~vD~Gt 93 (133)
T PF02966_consen 20 DRVVVIRFGRDWDPVCMQMDEILYKIAEK-VKN--FAVIYLVDIDE--VPDFNQMYELY-DPCTVMFFFRNKHMMVDFGT 93 (133)
T ss_dssp SSEEEEEEE-TTSHHHHHHHHHHHHHHHH-HTT--TEEEEEEETTT--THCCHHHTTS--SSEEEEEEETTEEEEEESSS
T ss_pred ceEEEEEeCCCCCccHHHHHHHHHHHHHH-hhc--ceEEEEEEccc--chhhhcccccC-CCeEEEEEecCeEEEEEecC
Confidence 35799999999999999999999999966 333 37888899998 89999999998 775 555534443211
Q ss_pred -----ecCC-CCHHHHHHHHHh
Q psy14086 300 -----YNGS-RDLEELYQFILK 315 (324)
Q Consensus 300 -----~~g~-~~~~~l~~fi~~ 315 (324)
..+. .+.+++.+.++-
T Consensus 94 gnnnKin~~~~~kqe~iDiie~ 115 (133)
T PF02966_consen 94 GNNNKINWAFEDKQEFIDIIET 115 (133)
T ss_dssp SSSSSBCS--SCHHHHHHHHHH
T ss_pred CCccEEEEEcCcHHHHHHHHHH
Confidence 2222 346777777764
No 391
>KOG3170|consensus
Probab=95.58 E-value=0.077 Score=41.70 Aligned_cols=100 Identities=17% Similarity=0.349 Sum_probs=73.1
Q ss_pred CCeeEecccccccccc---CC-cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCc
Q psy14086 209 EPVVSLTSENFNDVIK---SG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG 284 (324)
Q Consensus 209 ~~v~~l~~~~~~~~~~---~~-~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~ 284 (324)
+.|..|++.+|-.-+. .+ .|+|..|...-+.|+-+..+++.+|.+ |.. ++|+++-++.- . .-|-=..
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~k-fp~---iKFVki~at~c-I----pNYPe~n 161 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACK-FPQ---IKFVKIPATTC-I----PNYPESN 161 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhc-CCc---ceEEecccccc-c----CCCcccC
Confidence 6799999999766552 23 488999999999999999999999966 544 88888776551 1 1233347
Q ss_pred cceEEEEecCeeeee------ecCC-CCHHHHHHHHHhhc
Q psy14086 285 FPSIYVYKNGVRTAE------YNGS-RDLEELYQFILKHK 317 (324)
Q Consensus 285 ~P~l~~~~~g~~~~~------~~g~-~~~~~l~~fi~~~~ 317 (324)
.|||++|..|..... +-|. .+.+++..++-+..
T Consensus 162 lPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qag 201 (240)
T KOG3170|consen 162 LPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAG 201 (240)
T ss_pred CCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhcc
Confidence 899999988854322 3333 57899999987754
No 392
>PRK10638 glutaredoxin 3; Provisional
Probab=95.53 E-value=0.029 Score=38.19 Aligned_cols=58 Identities=12% Similarity=0.323 Sum_probs=38.0
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--cchhhhhhcCCCccceEEEEecCeee
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--LSKDLCNQEGVDGFPSIYVYKNGVRT 297 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~i~~~P~l~~~~~g~~~ 297 (324)
++.|..+||+.|......+++. ++.+..+|++.. ...++.+..+...+|++ |-+|+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~---------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~i 63 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK---------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQHI 63 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc---------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 5678889999999998777754 345666777651 11233444577789987 4456443
No 393
>KOG1752|consensus
Probab=95.31 E-value=0.14 Score=36.30 Aligned_cols=63 Identities=14% Similarity=0.278 Sum_probs=40.8
Q ss_pred hHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch-hh----hhhCCccccceEEE
Q psy14086 90 SFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR-SI----CQSFDIKSYPTLLW 159 (324)
Q Consensus 90 ~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~-~~----~~~~~i~~~P~~~~ 159 (324)
.+.+.+.+++ +|.|..+||++|..+...|.. +.. ...++.+|-..+. .+ .+.-|-+.+|.+++
T Consensus 6 ~v~~~i~~~~-VVifSKs~C~~c~~~k~ll~~----~~v--~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 6 KVRKMISENP-VVIFSKSSCPYCHRAKELLSD----LGV--NPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred HHHHHhhcCC-EEEEECCcCchHHHHHHHHHh----CCC--CCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 3555555555 566999999999997777777 333 5677777755432 23 22334557897765
No 394
>PRK10638 glutaredoxin 3; Provisional
Probab=95.29 E-value=0.041 Score=37.41 Aligned_cols=51 Identities=12% Similarity=0.225 Sum_probs=35.9
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch----hhhhhCCccccceEEE
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR----SICQSFDIKSYPTLLW 159 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~----~~~~~~~i~~~P~~~~ 159 (324)
+++|..++|++|......+++. .+.+..+|++.+. .+.+..|..++|++++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5678899999999988887753 3556666665443 3445557778997743
No 395
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=95.29 E-value=0.22 Score=35.75 Aligned_cols=93 Identities=12% Similarity=0.205 Sum_probs=58.2
Q ss_pred eEecc-ccccccccC--CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceE
Q psy14086 212 VSLTS-ENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI 288 (324)
Q Consensus 212 ~~l~~-~~~~~~~~~--~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l 288 (324)
..++. +.++.++.. +.++|-|+...-+ .....+.++|.. ++. .+.|+... +.++.+.+++. .|.+
T Consensus 3 ~~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~-~Rd--d~~F~~t~-----~~~~~~~~~~~-~~~v 70 (107)
T cd03068 3 KQLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANS-LRE--DYKFHHTF-----DSEIFKSLKVS-PGQL 70 (107)
T ss_pred eEcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHh-ccc--CCEEEEEC-----hHHHHHhcCCC-CCce
Confidence 44433 346776643 4566666654322 356678888855 444 47786654 56677788885 6777
Q ss_pred EEEec-------CeeeeeecCC-CCHHH-HHHHHHhh
Q psy14086 289 YVYKN-------GVRTAEYNGS-RDLEE-LYQFILKH 316 (324)
Q Consensus 289 ~~~~~-------g~~~~~~~g~-~~~~~-l~~fi~~~ 316 (324)
++|+. ......|.|. .+.++ |.+||.++
T Consensus 71 vl~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 71 VVFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred EEECcHHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 77732 2234578887 56655 99999764
No 396
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=95.25 E-value=0.071 Score=42.11 Aligned_cols=27 Identities=22% Similarity=0.621 Sum_probs=22.2
Q ss_pred EEeCCCCHhHhhHHHHHHHHHHhcCCC
Q psy14086 103 KFYAPWCGHCQSLAPVWQELASHFKTE 129 (324)
Q Consensus 103 ~f~~~~c~~c~~~~~~~~~la~~~~~~ 129 (324)
+|..|.|+.|-...|.|+++...+..+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~ 28 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK 28 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc
Confidence 689999999999999999999999883
No 397
>PRK10824 glutaredoxin-4; Provisional
Probab=95.19 E-value=0.029 Score=40.65 Aligned_cols=66 Identities=20% Similarity=0.332 Sum_probs=39.1
Q ss_pred ccccccCCcEEEEEeC----CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhh----hcCCCccceEEE
Q psy14086 219 FNDVIKSGTVFIKFFA----PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCN----QEGVDGFPSIYV 290 (324)
Q Consensus 219 ~~~~~~~~~~~v~f~~----~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~----~~~i~~~P~l~~ 290 (324)
.++.+++++++|+--+ |||++|+.....|..+. +.+..+|... ++++.. .-+-..+|.|
T Consensus 8 v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~---------i~~~~idi~~--d~~~~~~l~~~sg~~TVPQI-- 74 (115)
T PRK10824 8 IQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACG---------ERFAYVDILQ--NPDIRAELPKYANWPTFPQL-- 74 (115)
T ss_pred HHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcC---------CCceEEEecC--CHHHHHHHHHHhCCCCCCeE--
Confidence 4455556666665443 69999999988887763 2333455554 343333 2345567766
Q ss_pred EecCeee
Q psy14086 291 YKNGVRT 297 (324)
Q Consensus 291 ~~~g~~~ 297 (324)
|-+|+-+
T Consensus 75 FI~G~~I 81 (115)
T PRK10824 75 WVDGELV 81 (115)
T ss_pred EECCEEE
Confidence 5566443
No 398
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.27 Score=42.56 Aligned_cols=135 Identities=16% Similarity=0.273 Sum_probs=94.1
Q ss_pred cCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceEcChhhHHHHh--cCCCEEEEEeCCC
Q psy14086 31 GYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELTEESFEKYV--SLGNHFVKFYAPW 108 (324)
Q Consensus 31 ~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~--~~~~~~v~f~~~~ 108 (324)
.-|++.+=+.|. ...++|.|-.-.+++.+++...+.- ...-..++.+-.++.. .....+=.|++-.
T Consensus 60 RkpSF~i~r~g~-~~gv~FAglPlGHEftSlVLaLlqv-----------~G~ppk~~q~vieqik~i~g~~~FETy~Slt 127 (520)
T COG3634 60 RKPSFSINRPGE-DQGVRFAGLPLGHEFTSLVLALLQV-----------GGHPPKEDQDVIEQIKAIDGDFHFETYFSLT 127 (520)
T ss_pred cCCceeecCCCc-ccceEEecCcccchHHHHHHHHHHh-----------cCCCCchhHHHHHHHHhcCCceeEEEEEEee
Confidence 348999988776 6678999988777776666654431 0012234444444443 3344588888999
Q ss_pred CHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHh
Q psy14086 109 CGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184 (324)
Q Consensus 109 c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~ 184 (324)
|..|-.....+.-.+---. ++.-..+|..-..+-.+.-+|-++|++++ +|+.. -+|..+.++|.+-|..
T Consensus 128 C~nCPDVVQALN~msvlNp---~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~f--g~GRmtleeilaki~~ 196 (520)
T COG3634 128 CHNCPDVVQALNLMSVLNP---RIKHTAIDGALFQDEVEARNIMAVPTVFL--NGEEF--GQGRMTLEEILAKIDT 196 (520)
T ss_pred ccCChHHHHHHHHHHhcCC---CceeEEecchhhHhHHHhccceecceEEE--cchhh--cccceeHHHHHHHhcC
Confidence 9999988888877665533 69999999887777777779999998875 55543 3677788888777765
No 399
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=95.04 E-value=0.26 Score=40.34 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=40.3
Q ss_pred CCCCCeeEecccc---cccccc-CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcC
Q psy14086 206 VKPEPVVSLTSEN---FNDVIK-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDN 257 (324)
Q Consensus 206 ~~~~~v~~l~~~~---~~~~~~-~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~ 257 (324)
..+.+|..+++++ +.++.+ ++|.++.|.+=.|++-..-...+++++++ +..
T Consensus 79 APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~-f~d 133 (237)
T PF00837_consen 79 APNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVED-FSD 133 (237)
T ss_pred CCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHH-hhh
Confidence 3457899999877 445554 46999999999999988889999999977 444
No 400
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=95.03 E-value=0.37 Score=34.55 Aligned_cols=89 Identities=12% Similarity=0.176 Sum_probs=60.8
Q ss_pred ChhhHHHHhcC--CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCC-
Q psy14086 87 TEESFEKYVSL--GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG- 163 (324)
Q Consensus 87 ~~~~f~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g- 163 (324)
+.+.++.++.. ...+|.|+...-. .....|.++|..++. .+.|+... ...+.+.+++. .|.+++|++.
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd--d~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~~ 77 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRE--DYKFHHTF---DSEIFKSLKVS-PGQLVVFQPEK 77 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhccc--CCEEEEEC---hHHHHHhcCCC-CCceEEECcHH
Confidence 45567777643 4556777766443 356789999999988 78887543 45677888876 5668888443
Q ss_pred ------eEeeeecCC-CCHHH-HHHHHHh
Q psy14086 164 ------KKLDKFQGS-RTLET-LVNYVSK 184 (324)
Q Consensus 164 ------~~~~~~~g~-~~~~~-i~~fi~~ 184 (324)
.....|.|. .+.++ |.+||+.
T Consensus 78 ~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 78 FQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred HhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 334567877 56656 9999975
No 401
>KOG1752|consensus
Probab=93.09 E-value=0.3 Score=34.71 Aligned_cols=66 Identities=17% Similarity=0.368 Sum_probs=39.6
Q ss_pred cccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhh----hcCCCccceEEEEecCe
Q psy14086 220 NDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCN----QEGVDGFPSIYVYKNGV 295 (324)
Q Consensus 220 ~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~----~~~i~~~P~l~~~~~g~ 295 (324)
.+.+.+++ +|.|..+||++|..+...|..+. ....+..+|-... ..++.+ .-+.+.+|.+ |-+|+
T Consensus 8 ~~~i~~~~-VVifSKs~C~~c~~~k~ll~~~~-------v~~~vvELD~~~~-g~eiq~~l~~~tg~~tvP~v--FI~Gk 76 (104)
T KOG1752|consen 8 RKMISENP-VVIFSKSSCPYCHRAKELLSDLG-------VNPKVVELDEDED-GSEIQKALKKLTGQRTVPNV--FIGGK 76 (104)
T ss_pred HHHhhcCC-EEEEECCcCchHHHHHHHHHhCC-------CCCEEEEccCCCC-cHHHHHHHHHhcCCCCCCEE--EECCE
Confidence 33443444 45688999999999877777621 2456666775542 224433 2345578887 44554
Q ss_pred e
Q psy14086 296 R 296 (324)
Q Consensus 296 ~ 296 (324)
-
T Consensus 77 ~ 77 (104)
T KOG1752|consen 77 F 77 (104)
T ss_pred E
Confidence 3
No 402
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.44 E-value=5.2 Score=34.98 Aligned_cols=174 Identities=15% Similarity=0.182 Sum_probs=110.7
Q ss_pred CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeE-eeeecCCCCHHH
Q psy14086 99 NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKK-LDKFQGSRTLET 177 (324)
Q Consensus 99 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~-~~~~~g~~~~~~ 177 (324)
+..+.-........+.+...+++++..-. ++.+-.-+ ....-|++.+-++|.. -.+|.|-.--.+
T Consensus 20 ~i~l~asldds~~s~~~~~ll~eia~~S~---kis~~~~~-----------~~~RkpSF~i~r~g~~~gv~FAglPlGHE 85 (520)
T COG3634 20 PIELVASLDDSEKSKEIKELLDEIASLSD---KISLEEDS-----------DLVRKPSFSINRPGEDQGVRFAGLPLGHE 85 (520)
T ss_pred CeEEEEecCcccccHHHHHHHHHHHhhcc---ceeeeecC-----------ccccCCceeecCCCcccceEEecCcccch
Confidence 34344444556667778888888887642 45544321 1245698988888743 356888766677
Q ss_pred HHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccc--cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhh
Q psy14086 178 LVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLL 255 (324)
Q Consensus 178 i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~--~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~ 255 (324)
+..++..++.-. ..-..+..+-++++- +..-.|=.|++-.|.-|-.+...++-++ - .
T Consensus 86 ftSlVLaLlqv~-------------------G~ppk~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~ms-v-l 144 (520)
T COG3634 86 FTSLVLALLQVG-------------------GHPPKEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMS-V-L 144 (520)
T ss_pred HHHHHHHHHHhc-------------------CCCCchhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHH-h-c
Confidence 888887776522 111111222233221 2234666777888999999888888877 3 3
Q ss_pred cCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHh
Q psy14086 256 DNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILK 315 (324)
Q Consensus 256 ~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~ 315 (324)
+ +++.-..||... ..+-.+.-+|.++|++ |.+|+.+. .|..+.+++..-|..
T Consensus 145 N--p~I~H~~IdGa~--Fq~Evear~IMaVPtv--flnGe~fg--~GRmtleeilaki~~ 196 (520)
T COG3634 145 N--PRIKHTAIDGAL--FQDEVEARNIMAVPTV--FLNGEEFG--QGRMTLEEILAKIDT 196 (520)
T ss_pred C--CCceeEEecchh--hHhHHHhccceecceE--EEcchhhc--ccceeHHHHHHHhcC
Confidence 3 367777888655 5555677789999998 56776653 577888888776653
No 403
>KOG2640|consensus
Probab=92.41 E-value=0.061 Score=45.35 Aligned_cols=85 Identities=24% Similarity=0.481 Sum_probs=67.9
Q ss_pred CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEec-cccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHH
Q psy14086 99 NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID-CTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLET 177 (324)
Q Consensus 99 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd-~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~ 177 (324)
.+-..||+.||+..+...|.++-....|.. +....++ ...-+.+..++|+.+.|++.+....-.. +|.|.++...
T Consensus 78 ~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~---i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~-~~~~~r~l~s 153 (319)
T KOG2640|consen 78 YVSLLFYASWCPFSRAVRPEFDVRSSLFSS---IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPA-SYRGERDLAS 153 (319)
T ss_pred cccccchhcccCcccccCcccchhhhhccc---cccccHHHHhhcccchhccccccCCcceeeccccch-hhcccccHHH
Confidence 456899999999999999999998888863 4444343 3355788999999999999887665443 5899999999
Q ss_pred HHHHHHhhhC
Q psy14086 178 LVNYVSKMKG 187 (324)
Q Consensus 178 i~~fi~~~~~ 187 (324)
|++|..+.+.
T Consensus 154 Lv~fy~~i~~ 163 (319)
T KOG2640|consen 154 LVNFYTEITP 163 (319)
T ss_pred HHHHHHhhcc
Confidence 9999988875
No 404
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=92.40 E-value=2.7 Score=29.30 Aligned_cols=74 Identities=14% Similarity=0.131 Sum_probs=51.0
Q ss_pred CCCE-EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeE-eeeecCCCC
Q psy14086 97 LGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKK-LDKFQGSRT 174 (324)
Q Consensus 97 ~~~~-~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~-~~~~~g~~~ 174 (324)
.+++ ++.|..+. ..|..+...+++++..-. ++.+...+... ..|++.+..+|+. -.+|.|-..
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd---kI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~ 82 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLSD---KITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPM 82 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC---ceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCC
Confidence 3444 56666655 889888888888887642 57665433211 4799999877633 267999888
Q ss_pred HHHHHHHHHhh
Q psy14086 175 LETLVNYVSKM 185 (324)
Q Consensus 175 ~~~i~~fi~~~ 185 (324)
-.++..||...
T Consensus 83 GhEf~Slilai 93 (94)
T cd02974 83 GHEFTSLVLAL 93 (94)
T ss_pred chhHHHHHHHh
Confidence 88898888764
No 405
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=92.31 E-value=1.3 Score=31.26 Aligned_cols=92 Identities=7% Similarity=0.062 Sum_probs=55.2
Q ss_pred cCCcEEEEEeCCCCh-hhhhhhHhHHHHHHHhhcCC----C---CeEEEEEecCCccchhhhhhcCCC-ccceEEEEe--
Q psy14086 224 KSGTVFIKFFAPWCG-HCKRLAPTWEELGTKLLDNK----H---GIVIAKVDCTQELSKDLCNQEGVD-GFPSIYVYK-- 292 (324)
Q Consensus 224 ~~~~~~v~f~~~~c~-~C~~~~~~~~~~a~~~~~~~----~---~~~~~~id~~~~~~~~~~~~~~i~-~~P~l~~~~-- 292 (324)
...+++|.|....-. .-+...+.++.+|.+++... . -+-|+..+-+. ...+..-.++. ..|-+++..
T Consensus 13 n~~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~--tdsLRDf~nL~d~~P~LviLDip 90 (116)
T cd03071 13 NEGPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDM--TDSLRDYTNLPEAAPLLTILDMS 90 (116)
T ss_pred cCCceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchH--HHHHHHhcCCCccCceEEEEecc
Confidence 467899999865544 46667778887776553221 1 13333333222 23334444554 578888873
Q ss_pred cCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086 293 NGVRTAEYNGSRDLEELYQFILKHK 317 (324)
Q Consensus 293 ~g~~~~~~~g~~~~~~l~~fi~~~~ 317 (324)
+.+++..-....|.+.+.+||.+++
T Consensus 91 ~r~~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 91 ARAKYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred ccceEeCchHhcCHHHHHHHHHHhh
Confidence 3333332234689999999999875
No 406
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=92.28 E-value=0.24 Score=44.80 Aligned_cols=54 Identities=15% Similarity=0.298 Sum_probs=37.1
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchh---hhhh---------cCCCccceEEEEecCe
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKD---LCNQ---------EGVDGFPSIYVYKNGV 295 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~---~~~~---------~~i~~~P~l~~~~~g~ 295 (324)
+++|..+||++|......|.+. ++.|..+|++. .+. +.+. .|..++|.+++ +|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~---------gi~~~~idi~~--~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~ 69 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN---------DIPFTQISLDD--DVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDV 69 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC---------CCCeEEEECCC--ChhHHHHHHHHhhccccccCCCCccCeEEE--CCE
Confidence 6789999999999887766653 36677788776 332 2222 36678999944 454
No 407
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=91.94 E-value=0.43 Score=36.34 Aligned_cols=28 Identities=39% Similarity=0.769 Sum_probs=24.3
Q ss_pred CcEEEEEeCCCChhhhhhhHhHHHHHHH
Q psy14086 226 GTVFIKFFAPWCGHCKRLAPTWEELGTK 253 (324)
Q Consensus 226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~ 253 (324)
+..++.|+.++|++|+.+.+.+.++..+
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~~~~~ 33 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEKLLKE 33 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHHHHHH
Confidence 4688999999999999999999887644
No 408
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=91.92 E-value=4 Score=30.37 Aligned_cols=74 Identities=16% Similarity=0.339 Sum_probs=54.0
Q ss_pred EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCcc----ccceEEEEeCCeEeeeecCCCCH
Q psy14086 100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIK----SYPTLLWIESGKKLDKFQGSRTL 175 (324)
Q Consensus 100 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~----~~P~~~~~~~g~~~~~~~g~~~~ 175 (324)
-++.|++|.|+=|......++. . .+.+-.+..+....+-+++||. +--|.++ +|. ..+|...+
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~-----~---Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy---~vEGHVPa 93 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKA-----N---GFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGY---YVEGHVPA 93 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHh-----C---CcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCE---EEeccCCH
Confidence 3788999999999987777662 1 3666666667777888889986 2334443 442 25788999
Q ss_pred HHHHHHHHhhh
Q psy14086 176 ETLVNYVSKMK 186 (324)
Q Consensus 176 ~~i~~fi~~~~ 186 (324)
++|..++.+.-
T Consensus 94 ~aI~~ll~~~p 104 (149)
T COG3019 94 EAIARLLAEKP 104 (149)
T ss_pred HHHHHHHhCCC
Confidence 99999998754
No 409
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=91.66 E-value=0.84 Score=29.86 Aligned_cols=61 Identities=11% Similarity=0.127 Sum_probs=49.9
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeC
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIES 162 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~ 162 (324)
+..|-+...+........++++-+.+. ...+.+-.+|..+++.+++.++|-..|+++-..+
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l-~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~P 64 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELL-GGPYELEVIDVLKQPQLAEEDKIVATPTLVKVLP 64 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhc-CCcEEEEEEEcccCHhHHhhCCEEEechhhhcCC
Confidence 566777777888888888888888775 3489999999999999999999999999875433
No 410
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=91.66 E-value=0.33 Score=43.93 Aligned_cols=51 Identities=12% Similarity=0.255 Sum_probs=36.7
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh---hhhh---------CCccccceEEE
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS---ICQS---------FDIKSYPTLLW 159 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~---~~~~---------~~i~~~P~~~~ 159 (324)
++.|..+||++|......|.+. ++.|-.+|+++.+. +.++ .|.+++|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6789999999999988777763 36777777775542 2222 46778998865
No 411
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=91.25 E-value=1.2 Score=33.02 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=33.9
Q ss_pred chhhhhhcCCCccceEEEEecCe-----------eeeeecCCCCHHHHHHHHHh
Q psy14086 273 SKDLCNQEGVDGFPSIYVYKNGV-----------RTAEYNGSRDLEELYQFILK 315 (324)
Q Consensus 273 ~~~~~~~~~i~~~P~l~~~~~g~-----------~~~~~~g~~~~~~l~~fi~~ 315 (324)
++.+.++|+|+.+|++++.+++. .+....|..+.+.-.+.+.+
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~ 113 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQ 113 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHH
Confidence 68999999999999999998764 34556688887776666654
No 412
>KOG2640|consensus
Probab=90.06 E-value=0.16 Score=42.86 Aligned_cols=87 Identities=22% Similarity=0.414 Sum_probs=62.4
Q ss_pred CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCC
Q psy14086 226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRD 305 (324)
Q Consensus 226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~ 305 (324)
..+-+.||+.||+..+...|.+.-.. ..+.... .++.=+... -+.+.+.+++.+.|++.+....-. ..|.|.++
T Consensus 77 ~~vs~~fy~s~C~fsr~~~~~fd~~~-sl~~~i~--h~~vee~~~--lpsv~s~~~~~~~ps~~~~n~t~~-~~~~~~r~ 150 (319)
T KOG2640|consen 77 DYVSLLFYASWCPFSRAVRPEFDVRS-SLFSSIQ--HFAVEESQA--LPSVFSSYGIHSEPSNLMLNQTCP-ASYRGERD 150 (319)
T ss_pred CcccccchhcccCcccccCcccchhh-hhccccc--cccHHHHhh--cccchhccccccCCcceeeccccc-hhhccccc
Confidence 36888999999999999999887766 3344211 122111111 356678889999999987655434 46899999
Q ss_pred HHHHHHHHHhhcc
Q psy14086 306 LEELYQFILKHKV 318 (324)
Q Consensus 306 ~~~l~~fi~~~~~ 318 (324)
..+|.+|-.+.++
T Consensus 151 l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 151 LASLVNFYTEITP 163 (319)
T ss_pred HHHHHHHHHhhcc
Confidence 9999999998876
No 413
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=89.69 E-value=1.6 Score=32.46 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=36.8
Q ss_pred cccchhhhhhCCccccceEEEEeCCe-----------EeeeecCCCCHHHHHHHHHhh
Q psy14086 139 CTQHRSICQSFDIKSYPTLLWIESGK-----------KLDKFQGSRTLETLVNYVSKM 185 (324)
Q Consensus 139 ~~~~~~~~~~~~i~~~P~~~~~~~g~-----------~~~~~~g~~~~~~i~~fi~~~ 185 (324)
..-++.+.++|+|+.+|++++.+++. .+....|..+.+.-.+.+.+.
T Consensus 57 v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 57 VQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred EEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHh
Confidence 34578999999999999999998763 355667888888777777643
No 414
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=89.27 E-value=1.5 Score=28.66 Aligned_cols=58 Identities=14% Similarity=0.232 Sum_probs=45.2
Q ss_pred EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEE
Q psy14086 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIY 289 (324)
Q Consensus 228 ~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~ 289 (324)
.+..|-+...+.+......+.++..++... .+.+-.+|..+ ++++++.++|-..||++
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~--~~~LeVIDv~~--~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGG--PYELEVIDVLK--QPQLAEEDKIVATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCC--cEEEEEEEccc--CHhHHhhCCEEEechhh
Confidence 345566666667777777777777665544 78889999999 99999999999999985
No 415
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=88.62 E-value=0.21 Score=39.42 Aligned_cols=40 Identities=28% Similarity=0.448 Sum_probs=17.1
Q ss_pred cchhhhccCCCccCCceEEEecCCcccccccCCCCChHHH
Q psy14086 19 VEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTL 58 (324)
Q Consensus 19 ~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i 58 (324)
++..++++++|+++||+++|........+...|..+.+.+
T Consensus 135 ~D~~la~~m~I~~~Ptlvi~~~~~~~~g~~i~g~~~~~~~ 174 (176)
T PF13743_consen 135 EDQQLAREMGITGFPTLVIFNENNEEYGILIEGYYSYEVY 174 (176)
T ss_dssp HHHHHHHHTT-SSSSEEEEE--------------------
T ss_pred HHHHHHHHcCCCCCCEEEEEeccccccccccccccccccc
Confidence 4567999999999999999994332345666666655443
No 416
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=88.05 E-value=1 Score=35.26 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=26.2
Q ss_pred cCCcEEEEEeCCCChhhhhhhHhHHHHHHH
Q psy14086 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTK 253 (324)
Q Consensus 224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~ 253 (324)
..++.++.|+...|++|+.+.+.+..+..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~ 43 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKK 43 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHh
Confidence 346789999999999999999999988755
No 417
>KOG2507|consensus
Probab=87.31 E-value=7.1 Score=34.79 Aligned_cols=90 Identities=17% Similarity=0.235 Sum_probs=64.2
Q ss_pred cCCCEEEEEeCCCCHhHhhHH-HHHHHHH--HhcCCCCCeEEEEeccc--cchhhhhhCCccccceEEEEeC-CeEeeee
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLA-PVWQELA--SHFKTEEDVSIAKIDCT--QHRSICQSFDIKSYPTLLWIES-GKKLDKF 169 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~-~~~~~la--~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~P~~~~~~~-g~~~~~~ 169 (324)
.++.++|.|.+........+. -.|.... ...-. .+..++++.. ....+..-|.+-.+|+++++.. |..+...
T Consensus 17 ~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~--~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevi 94 (506)
T KOG2507|consen 17 GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSK--YFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVI 94 (506)
T ss_pred cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhc--ceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEe
Confidence 456788889888888777766 3443322 22222 5667777765 3456777788889999999976 8899888
Q ss_pred cCCCCHHHHHHHHHhhhC
Q psy14086 170 QGSRTLETLVNYVSKMKG 187 (324)
Q Consensus 170 ~g~~~~~~i~~fi~~~~~ 187 (324)
.|..++++|..-|.+...
T Consensus 95 tg~v~adeL~~~i~Kv~~ 112 (506)
T KOG2507|consen 95 TGFVTADELASSIEKVWL 112 (506)
T ss_pred eccccHHHHHHHHHHHHH
Confidence 999999999887776543
No 418
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=86.48 E-value=3.3 Score=28.19 Aligned_cols=73 Identities=14% Similarity=0.069 Sum_probs=55.7
Q ss_pred EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCC
Q psy14086 100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRT 174 (324)
Q Consensus 100 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~ 174 (324)
.+-.|.+...+.+......++++-+.+-.. .+.+-.+|..+++.+++.++|-+.|+++=..+. +..+..|.++
T Consensus 5 ~LrLyvag~~p~S~~ai~nl~~i~e~~l~g-~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~-P~rriiGdls 77 (87)
T TIGR02654 5 VLKLYVAGNTPNSVRALKTLKNILETEFQG-VYALKVIDVLKNPQLAEEDKILATPTLSKILPP-PVRKIIGDLS 77 (87)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCC-ceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC-Ccceeecccc
Confidence 355677778888888888888887765432 588889999999999999999999998755443 4455677654
No 419
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=85.97 E-value=6.3 Score=25.83 Aligned_cols=75 Identities=9% Similarity=0.129 Sum_probs=42.0
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHH
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVN 180 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~ 180 (324)
+..|+.+.|+.|+...-.+....-. +.+..+|......+ +.-+-..+|+++.-..|..... .....|.+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~------y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l----~eS~~I~~ 70 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP------YEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQL----VDSSVIIS 70 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc------eEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEE----EcHHHHHH
Confidence 4568889999999888666554332 22333333222233 3334557998765321111111 25567888
Q ss_pred HHHhhh
Q psy14086 181 YVSKMK 186 (324)
Q Consensus 181 fi~~~~ 186 (324)
|+.+.+
T Consensus 71 yL~~~~ 76 (77)
T cd03040 71 TLKTYL 76 (77)
T ss_pred HHHHHc
Confidence 888765
No 420
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=85.93 E-value=15 Score=29.83 Aligned_cols=92 Identities=14% Similarity=0.260 Sum_probs=55.5
Q ss_pred cCCCEEEEEeCCCCHh-HhhHHHHHHHHHHhcC-CC-C--CeEEEEeccccc---------------------------h
Q psy14086 96 SLGNHFVKFYAPWCGH-CQSLAPVWQELASHFK-TE-E--DVSIAKIDCTQH---------------------------R 143 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~-c~~~~~~~~~la~~~~-~~-~--~i~~~~vd~~~~---------------------------~ 143 (324)
+.++++|.|.-+.|+. |-.....+..+..+.. .. . ++.|+.+|-..+ .
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg~~~~~~ 145 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTGTPEQIE 145 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeCCHHHHH
Confidence 4567788888788874 8888877887777776 32 1 366677775432 2
Q ss_pred hhhhhCCcc---------------ccceEEEEe-CCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086 144 SICQSFDIK---------------SYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKMKG 187 (324)
Q Consensus 144 ~~~~~~~i~---------------~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~ 187 (324)
.+++.|++- +...+++++ +|.....|.+...++.|.+.++..+.
T Consensus 146 ~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 146 EVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred HHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 333333332 112234444 35555556666667888888777664
No 421
>KOG2507|consensus
Probab=84.83 E-value=7.5 Score=34.67 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=61.6
Q ss_pred CCcEEEEEeCCCChhhhhhh-HhHH-HHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEe-cCeeeeeec
Q psy14086 225 SGTVFIKFFAPWCGHCKRLA-PTWE-ELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK-NGVRTAEYN 301 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~-~~~~-~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~-~g~~~~~~~ 301 (324)
++.+||.|.+........+. -.|. ..-.+.... .+.-++|++.......+..-|-+..+|+++++. .|....+..
T Consensus 18 kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~--~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevit 95 (506)
T KOG2507|consen 18 KKALFVVYISGDDEESDKLNRLTWTDASVSDSLSK--YFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVIT 95 (506)
T ss_pred CCeEEEEEEecCchHhhHHhhccchhhhhhhhhhc--ceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEee
Confidence 35688888887766666655 2333 222232222 466677777664456677778888999998884 677777888
Q ss_pred CCCCHHHHHHHHHhh
Q psy14086 302 GSRDLEELYQFILKH 316 (324)
Q Consensus 302 g~~~~~~l~~fi~~~ 316 (324)
|..+.++|..-|.+.
T Consensus 96 g~v~adeL~~~i~Kv 110 (506)
T KOG2507|consen 96 GFVTADELASSIEKV 110 (506)
T ss_pred ccccHHHHHHHHHHH
Confidence 998999998888765
No 422
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.80 E-value=2 Score=29.91 Aligned_cols=68 Identities=22% Similarity=0.325 Sum_probs=41.9
Q ss_pred ccccccCCcEEEEEe----CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcC-CCccceE-EEEe
Q psy14086 219 FNDVIKSGTVFIKFF----APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEG-VDGFPSI-YVYK 292 (324)
Q Consensus 219 ~~~~~~~~~~~v~f~----~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~-i~~~P~l-~~~~ 292 (324)
+++.+++++++++.- .|.|+.+.....++..+. -+.|+.+|+-. ++++++... .++.||+ -+|-
T Consensus 8 I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g--------~v~~~~vnVL~--d~eiR~~lk~~s~WPT~PQLyi 77 (105)
T COG0278 8 IQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACG--------VVDFAYVDVLQ--DPEIRQGLKEYSNWPTFPQLYV 77 (105)
T ss_pred HHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcC--------CcceeEEeecc--CHHHHhccHhhcCCCCCceeeE
Confidence 344555566666553 266887666554443332 16788899988 788876544 3467877 4666
Q ss_pred cCee
Q psy14086 293 NGVR 296 (324)
Q Consensus 293 ~g~~ 296 (324)
+|+-
T Consensus 78 ~GEf 81 (105)
T COG0278 78 NGEF 81 (105)
T ss_pred CCEE
Confidence 7643
No 423
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=84.77 E-value=0.72 Score=32.85 Aligned_cols=78 Identities=17% Similarity=0.217 Sum_probs=43.4
Q ss_pred EEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC--ccchhhhhhcCCCccceEEEEe-cCeeeeee----cC
Q psy14086 230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ--ELSKDLCNQEGVDGFPSIYVYK-NGVRTAEY----NG 302 (324)
Q Consensus 230 v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~--~~~~~~~~~~~i~~~P~l~~~~-~g~~~~~~----~g 302 (324)
..|+.++|+.|+.....+++.. +.|-.+|... ....++.+..+..+.+.--+++ .|..+... ..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~---------i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~ 72 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEHG---------IEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKD 72 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHcC---------CCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCcccc
Confidence 5789999999999887666542 4444555533 1123444444443433233333 33322111 23
Q ss_pred CCCHHHHHHHHHhh
Q psy14086 303 SRDLEELYQFILKH 316 (324)
Q Consensus 303 ~~~~~~l~~fi~~~ 316 (324)
..+.+++.++|.++
T Consensus 73 ~ls~~e~~~~l~~~ 86 (105)
T cd02977 73 ELSDEEALELMAEH 86 (105)
T ss_pred CCCHHHHHHHHHhC
Confidence 46788888888765
No 424
>KOG2792|consensus
Probab=84.73 E-value=7 Score=32.49 Aligned_cols=89 Identities=10% Similarity=0.247 Sum_probs=53.7
Q ss_pred CEEEEEeCCCCHh-HhhHHHHHHHHHHhcCCCCC----eEEEEeccccc--------------------------hhhhh
Q psy14086 99 NHFVKFYAPWCGH-CQSLAPVWQELASHFKTEED----VSIAKIDCTQH--------------------------RSICQ 147 (324)
Q Consensus 99 ~~~v~f~~~~c~~-c~~~~~~~~~la~~~~~~~~----i~~~~vd~~~~--------------------------~~~~~ 147 (324)
..+++|-=++|+. |-.....|..+..+...+.. =.|+.+|-..+ ..+|+
T Consensus 141 w~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~vak 220 (280)
T KOG2792|consen 141 WSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQVAK 220 (280)
T ss_pred eEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHHHH
Confidence 3478888899986 76655555555555544322 26888886432 55666
Q ss_pred hCCcccc--c-----------e--EEEEeCCeEeeeecCC-CCHHHHHHHHHhhhC
Q psy14086 148 SFDIKSY--P-----------T--LLWIESGKKLDKFQGS-RTLETLVNYVSKMKG 187 (324)
Q Consensus 148 ~~~i~~~--P-----------~--~~~~~~g~~~~~~~g~-~~~~~i~~fi~~~~~ 187 (324)
+|.|-.- | + ++++++......|.|. .+++++.+-|...+.
T Consensus 221 ~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 221 KYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA 276 (280)
T ss_pred HhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence 6665421 1 2 2344553344446664 789999888877654
No 425
>PRK09301 circadian clock protein KaiB; Provisional
Probab=84.44 E-value=4.4 Score=28.53 Aligned_cols=73 Identities=14% Similarity=0.073 Sum_probs=56.7
Q ss_pred EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCC
Q psy14086 100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRT 174 (324)
Q Consensus 100 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~ 174 (324)
.+-.|.+...+..++....++++-+.+-.. .+.+-.+|..+++.+++.++|-+.|+++=..+. +..+..|.++
T Consensus 8 ~LrLyVag~tp~S~~ai~nL~~icE~~l~g-~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~-P~rriiGDls 80 (103)
T PRK09301 8 ILKLYVAGNTPNSVRALKTLKNILETEFKG-VYALKVIDVLKNPQLAEEDKILATPTLAKILPP-PVRKIIGDLS 80 (103)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCC-ceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC-Ccceeecccc
Confidence 466777888888888888888887765442 588889999999999999999999998755443 4556778764
No 426
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=83.42 E-value=4.5 Score=29.25 Aligned_cols=24 Identities=8% Similarity=0.372 Sum_probs=21.0
Q ss_pred cccchhhhhhCCccccceEEEEeC
Q psy14086 139 CTQHRSICQSFDIKSYPTLLWIES 162 (324)
Q Consensus 139 ~~~~~~~~~~~~i~~~P~~~~~~~ 162 (324)
..-++.+.++|+|+.+|++++.++
T Consensus 57 v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 57 VQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred eeEChhHHhhCCceEcCEEEEEcC
Confidence 445789999999999999999877
No 427
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=83.19 E-value=4.7 Score=26.63 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=40.3
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc--chhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHH
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ--HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETL 178 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~--~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i 178 (324)
+..|+.++|+.|.+..-.+.+..-.| ....++... ...+.+.-+...+|+++.-.+|... .....|
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y------~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l------~es~~I 69 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDV------ILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQM------FESADI 69 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcE------EEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEE------EcHHHH
Confidence 35677889999998776666544322 223332221 2234443455578987532223222 256678
Q ss_pred HHHHHhh
Q psy14086 179 VNYVSKM 185 (324)
Q Consensus 179 ~~fi~~~ 185 (324)
.+|+.+.
T Consensus 70 ~~yL~~~ 76 (77)
T cd03041 70 VKYLFKT 76 (77)
T ss_pred HHHHHHh
Confidence 8888753
No 428
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=83.00 E-value=3.3 Score=31.52 Aligned_cols=51 Identities=12% Similarity=0.269 Sum_probs=34.3
Q ss_pred EEEEeCC------CCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh----hhhhCCc----cccceEEE
Q psy14086 101 FVKFYAP------WCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS----ICQSFDI----KSYPTLLW 159 (324)
Q Consensus 101 ~v~f~~~------~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~----~~~~~~i----~~~P~~~~ 159 (324)
++.|+++ +|++|......|+.+ ++.|-.+|++.+.. +.+.++- ..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4667777 899999888777754 36677777765543 3344454 46786664
No 429
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=82.90 E-value=6.5 Score=25.28 Aligned_cols=68 Identities=12% Similarity=0.149 Sum_probs=37.2
Q ss_pred EEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHH
Q psy14086 103 KFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV 182 (324)
Q Consensus 103 ~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi 182 (324)
.|+.++|+.|....-.+....-. +....++........+..+-..+|++.. ++|... .....|.+|+
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~------~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~l------~es~aI~~yL 69 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIP------VEQIILQNDDEATPIRMIGAKQVPILEK-DDGSFM------AESLDIVAFI 69 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCC------eEEEECCCCchHHHHHhcCCCccCEEEe-CCCeEe------ehHHHHHHHH
Confidence 57788999999877666554332 2333444333223333444456887643 324322 2455677776
Q ss_pred H
Q psy14086 183 S 183 (324)
Q Consensus 183 ~ 183 (324)
.
T Consensus 70 ~ 70 (71)
T cd03037 70 D 70 (71)
T ss_pred h
Confidence 4
No 430
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=82.85 E-value=8.4 Score=25.22 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=40.6
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHH
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEE 308 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~ 308 (324)
+..|+.+.|+.|+..+-.+.+.. +.+-.++.+....+++ +.-+...+|+++.=..|.....+ +...
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~g---------i~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~----eS~~ 67 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHG---------IPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQLV----DSSV 67 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCC---------CceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEEE----cHHH
Confidence 34677789999999885555443 2233333322112333 33445579988642211111122 3577
Q ss_pred HHHHHHhhc
Q psy14086 309 LYQFILKHK 317 (324)
Q Consensus 309 l~~fi~~~~ 317 (324)
|.++|.+.+
T Consensus 68 I~~yL~~~~ 76 (77)
T cd03040 68 IISTLKTYL 76 (77)
T ss_pred HHHHHHHHc
Confidence 888888765
No 431
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=82.36 E-value=14 Score=25.68 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=47.9
Q ss_pred CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCee-eeeecCCC
Q psy14086 226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVR-TAEYNGSR 304 (324)
Q Consensus 226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~-~~~~~g~~ 304 (324)
...++.|..+. ..|..+...++++| . ... ++.+-..+ .. +..|++.+..+|+. -.+|.|--
T Consensus 20 pV~l~~f~~~~-~~~~e~~~ll~e~a-~-lSd--kI~~~~~~-----~~--------~~~P~~~i~~~~~~~gIrF~GiP 81 (94)
T cd02974 20 PVELVASLDDS-EKSAELLELLEEIA-S-LSD--KITLEEDN-----DD--------ERKPSFSINRPGEDTGIRFAGIP 81 (94)
T ss_pred CEEEEEEeCCC-cchHHHHHHHHHHH-H-hCC--ceEEEEec-----CC--------CCCCEEEEecCCCcccEEEEecC
Confidence 34566676655 88999999999998 4 223 45553222 11 14799999877643 24788876
Q ss_pred CHHHHHHHHHhh
Q psy14086 305 DLEELYQFILKH 316 (324)
Q Consensus 305 ~~~~l~~fi~~~ 316 (324)
.-.++..||...
T Consensus 82 ~GhEf~Slilai 93 (94)
T cd02974 82 MGHEFTSLVLAL 93 (94)
T ss_pred CchhHHHHHHHh
Confidence 677888887653
No 432
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=82.10 E-value=2.3 Score=32.42 Aligned_cols=56 Identities=13% Similarity=0.347 Sum_probs=34.8
Q ss_pred EEEEeCC------CChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--cchhhhhhcCC----CccceEEEEecCe
Q psy14086 229 FIKFFAP------WCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--LSKDLCNQEGV----DGFPSIYVYKNGV 295 (324)
Q Consensus 229 ~v~f~~~------~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~i----~~~P~l~~~~~g~ 295 (324)
++.|.++ +|++|..++.+|+.+ ++.|-.+|++.. ...++.+..+. ..+|.| |-+|+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~---------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqV--FI~G~ 69 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF---------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRV--FVDGR 69 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC---------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEE--EECCE
Confidence 4566666 899999988777654 356677777651 12244444443 468877 44553
No 433
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=82.05 E-value=3.3 Score=31.84 Aligned_cols=55 Identities=11% Similarity=0.175 Sum_probs=36.9
Q ss_pred cCCCE-EEEEeCCCCHhHhhH-HHHHHHHHHhcCCCCCe-EEEEeccc---cchhhhhhCCc
Q psy14086 96 SLGNH-FVKFYAPWCGHCQSL-APVWQELASHFKTEEDV-SIAKIDCT---QHRSICQSFDI 151 (324)
Q Consensus 96 ~~~~~-~v~f~~~~c~~c~~~-~~~~~~la~~~~~~~~i-~~~~vd~~---~~~~~~~~~~i 151 (324)
.++++ ++.|...||+.|... .+.|++...++... .+ .++.+..+ ....+++++++
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~-g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK-GVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC-CCCEEEEEECCCHHHHHHHHHhhCC
Confidence 34444 455557899999998 99999999999753 23 24444433 33457777776
No 434
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=81.92 E-value=15 Score=30.52 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=29.8
Q ss_pred hhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHhh
Q psy14086 143 RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM 185 (324)
Q Consensus 143 ~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~ 185 (324)
..++..+|+++.|++++-. + .+.|..+.++|.+.|...
T Consensus 205 ~~~a~~~gv~gTPt~~v~~--~---~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 205 YKLAQQLGVNGTPTFIVNG--K---LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHhcCCCcCCeEEECC--e---eecCCCCHHHHHHHHHHh
Confidence 4577788999999988743 2 578888889998888764
No 435
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=81.87 E-value=2.6 Score=34.19 Aligned_cols=32 Identities=22% Similarity=0.622 Sum_probs=24.4
Q ss_pred CCcEEEEEeCCCChhhhhhhHhH---HHHHHHhhcC
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPTW---EELGTKLLDN 257 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~~---~~~a~~~~~~ 257 (324)
+++-+|.|++-.|++|..+.+.+ ..+. +.+..
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~-~~~~~ 71 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVK-KKLPE 71 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHH-HhCCC
Confidence 45679999999999999998865 5665 43444
No 436
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=81.41 E-value=6.7 Score=28.35 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=19.4
Q ss_pred chhhhhhcCCCccceEEEEec
Q psy14086 273 SKDLCNQEGVDGFPSIYVYKN 293 (324)
Q Consensus 273 ~~~~~~~~~i~~~P~l~~~~~ 293 (324)
++.+.++|+|+.+|++++-++
T Consensus 60 dP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 60 DPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred ChhHHhhCCceEcCEEEEEcC
Confidence 689999999999999999877
No 437
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=80.14 E-value=25 Score=27.10 Aligned_cols=90 Identities=17% Similarity=0.240 Sum_probs=53.1
Q ss_pred CCcEEEEEeC-CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-------------------ccchhhhhhcCCCc
Q psy14086 225 SGTVFIKFFA-PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-------------------ELSKDLCNQEGVDG 284 (324)
Q Consensus 225 ~~~~~v~f~~-~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-------------------~~~~~~~~~~~i~~ 284 (324)
+++++++||. .+++.|....-.|++...++-.. ++.+.-|..+. +.+..+++.||+-.
T Consensus 30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~--~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~ 107 (157)
T COG1225 30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL--GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWG 107 (157)
T ss_pred CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC--CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCccc
Confidence 4578889985 35667877777777766553333 34444455443 23456778888732
Q ss_pred ------------cceEEEE-ecCeeeeeecCC---CCHHHHHHHHHhh
Q psy14086 285 ------------FPSIYVY-KNGVRTAEYNGS---RDLEELYQFILKH 316 (324)
Q Consensus 285 ------------~P~l~~~-~~g~~~~~~~g~---~~~~~l~~fi~~~ 316 (324)
.++.+++ ++|.....+... -..+++.+.|.+.
T Consensus 108 ~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 108 EKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred ccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 2344445 567665555332 3467777777654
No 438
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=80.04 E-value=6.1 Score=30.41 Aligned_cols=55 Identities=15% Similarity=0.279 Sum_probs=36.7
Q ss_pred CCCEEEEEeC-CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---cchhhhhhCCcc
Q psy14086 97 LGNHFVKFYA-PWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---QHRSICQSFDIK 152 (324)
Q Consensus 97 ~~~~~v~f~~-~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---~~~~~~~~~~i~ 152 (324)
.++++++||- .+++.|-...-.|++...+|... +..++.|-.+ ....++++++++
T Consensus 30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~-~a~V~GIS~Ds~~~~~~F~~k~~L~ 88 (157)
T COG1225 30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL-GAVVLGISPDSPKSHKKFAEKHGLT 88 (157)
T ss_pred CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHHhCCC
Confidence 3467777874 66778888888999998888753 3444444333 445667777665
No 439
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=79.40 E-value=20 Score=25.47 Aligned_cols=93 Identities=12% Similarity=0.053 Sum_probs=57.8
Q ss_pred HhcCCCEEEEEeCCCCH-hHhhHHHHHHHHHHhcC----CC----CCeEEEEeccccchhhhhhCCcc-ccceEEEEeC-
Q psy14086 94 YVSLGNHFVKFYAPWCG-HCQSLAPVWQELASHFK----TE----EDVSIAKIDCTQHRSICQSFDIK-SYPTLLWIES- 162 (324)
Q Consensus 94 ~~~~~~~~v~f~~~~c~-~c~~~~~~~~~la~~~~----~~----~~i~~~~vd~~~~~~~~~~~~i~-~~P~~~~~~~- 162 (324)
.++.++.+|+|...-.. .-+...+.++.+|++.. .+ ..+-|+..|.+....+....++. ..|.+++++-
T Consensus 11 ~Ln~~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~nL~d~~P~LviLDip 90 (116)
T cd03071 11 QLNEGPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNLPEAAPLLTILDMS 90 (116)
T ss_pred hhcCCceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcCCCccCceEEEEecc
Confidence 34677888888854443 56667777777776542 21 13455555544444455555665 5798888854
Q ss_pred CeEe-eeecCCCCHHHHHHHHHhhh
Q psy14086 163 GKKL-DKFQGSRTLETLVNYVSKMK 186 (324)
Q Consensus 163 g~~~-~~~~g~~~~~~i~~fi~~~~ 186 (324)
.+.. ..-...+|.+...+|+.+++
T Consensus 91 ~r~~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 91 ARAKYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred ccceEeCchHhcCHHHHHHHHHHhh
Confidence 2222 21225689999999999875
No 440
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=79.12 E-value=6.6 Score=26.78 Aligned_cols=58 Identities=10% Similarity=0.132 Sum_probs=44.1
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEE
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYV 290 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~ 290 (324)
+=.|.+..-+.+......+.++......+ .+.+-.+|... ++++++.++|-..||++=
T Consensus 6 LrLyvag~~p~S~~ai~nl~~i~e~~l~g--~y~LeVIDv~~--qP~lAE~~~IvATPtLIK 63 (87)
T TIGR02654 6 LKLYVAGNTPNSVRALKTLKNILETEFQG--VYALKVIDVLK--NPQLAEEDKILATPTLSK 63 (87)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCC--ceEEEEEEccc--CHhHHhHCCEEEecHHhh
Confidence 34455566666777777777777565555 58888899999 999999999999999853
No 441
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=78.96 E-value=1.5 Score=29.61 Aligned_cols=56 Identities=14% Similarity=0.168 Sum_probs=45.6
Q ss_pred EEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086 103 KFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW 159 (324)
Q Consensus 103 ~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~ 159 (324)
.|-+.......+....++.+.+.+-+ ..+.+-.+|..+++.+++.++|-..||++-
T Consensus 2 LyV~g~~~~s~~a~~~l~~l~~~~l~-~~~~LeVIDv~~~P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 2 LYVAGRTPSSERAIENLRRLCEEYLG-GRYELEVIDVLEQPELAEEDRIVATPTLIK 57 (82)
T ss_dssp EEESSBHHHHHHHHHHHHHHHHCHCT-TTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred eEECCCChHHHHHHHHHHHHHHhhCC-CcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence 35566666678888888888887543 389999999999999999999999998863
No 442
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=78.36 E-value=6.2 Score=30.32 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=29.0
Q ss_pred cCCc-EEEEEeCCCChhhhhh-hHhHHHHHHHhhcCCCCe-EEEEEecCC
Q psy14086 224 KSGT-VFIKFFAPWCGHCKRL-APTWEELGTKLLDNKHGI-VIAKVDCTQ 270 (324)
Q Consensus 224 ~~~~-~~v~f~~~~c~~C~~~-~~~~~~~a~~~~~~~~~~-~~~~id~~~ 270 (324)
.+++ +++.|-..||+.|... .+.+.+...++... ++ .+..+..+.
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~--g~~~V~~iS~D~ 75 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK--GVDEVICVSVND 75 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC--CCCEEEEEECCC
Confidence 3455 4555556789999998 99998888665444 33 355555444
No 443
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=77.99 E-value=14 Score=24.33 Aligned_cols=72 Identities=11% Similarity=0.199 Sum_probs=39.6
Q ss_pred EEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc--chhhhhhcCCCccceEEEEecCeeeeeecCCCCHH
Q psy14086 230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL--SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLE 307 (324)
Q Consensus 230 v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~--~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~ 307 (324)
..++.++|+.|.+++-.+.+.. +.|-.+++.... .+++.+.-....+|+++. .+|.. ..+ +..
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~g---------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~-~l~----es~ 67 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELE---------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD-PNTGV-QMF----ESA 67 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcC---------CcEEEEECCCChHHHHHHHHhCCCCcccEEEe-CCCCe-EEE----cHH
Confidence 4567789999998775555543 333334443311 234444344567998843 22222 222 357
Q ss_pred HHHHHHHhh
Q psy14086 308 ELYQFILKH 316 (324)
Q Consensus 308 ~l~~fi~~~ 316 (324)
.|.++|.+.
T Consensus 68 ~I~~yL~~~ 76 (77)
T cd03041 68 DIVKYLFKT 76 (77)
T ss_pred HHHHHHHHh
Confidence 788887653
No 444
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=77.66 E-value=14 Score=35.31 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=60.4
Q ss_pred ceEcChhhHHHHh-cCCCEEEEEeCCCCHhHhhHHHHH---HHHHHhcCCCCCeEEEEeccccchhhhhhCC--------
Q psy14086 83 LVELTEESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVW---QELASHFKTEEDVSIAKIDCTQHRSICQSFD-------- 150 (324)
Q Consensus 83 ~~~l~~~~f~~~~-~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~-------- 150 (324)
=....++.|.+.. +++|+++-.-..||.-|..+..+= .++|+.+.. .+.-++||-.+-+++-+.|.
T Consensus 28 W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~--~FV~IKVDREERPDvD~~Ym~~~q~~tG 105 (667)
T COG1331 28 WYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE--NFVPVKVDREERPDVDSLYMNASQAITG 105 (667)
T ss_pred ccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh--CceeeeEChhhccCHHHHHHHHHHHhcc
Confidence 3567789998776 666889999999999998877632 467777765 78999999887776665553
Q ss_pred ccccceEEEEeC-CeEe
Q psy14086 151 IKSYPTLLWIES-GKKL 166 (324)
Q Consensus 151 i~~~P~~~~~~~-g~~~ 166 (324)
--+.|.-+++.+ |++.
T Consensus 106 ~GGWPLtVfLTPd~kPF 122 (667)
T COG1331 106 QGGWPLTVFLTPDGKPF 122 (667)
T ss_pred CCCCceeEEECCCCcee
Confidence 336997777766 5443
No 445
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=77.39 E-value=8 Score=24.92 Aligned_cols=52 Identities=12% Similarity=0.154 Sum_probs=31.5
Q ss_pred EEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEE
Q psy14086 230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIY 289 (324)
Q Consensus 230 v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~ 289 (324)
+.|+.++|+.|...+-.+.+... .+.+..+|.... .+++.+......+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl-------~~e~~~v~~~~~-~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI-------TVELREVELKNK-PAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC-------CcEEEEeCCCCC-CHHHHHHCCCCCCCEEE
Confidence 45778999999887655544431 344555554331 24554545566899984
No 446
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.31 E-value=4.6 Score=26.42 Aligned_cols=58 Identities=19% Similarity=0.344 Sum_probs=34.0
Q ss_pred EEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC------------ccchhh--hhhcCCCccceEEEEecCe
Q psy14086 230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ------------ELSKDL--CNQEGVDGFPSIYVYKNGV 295 (324)
Q Consensus 230 v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~------------~~~~~~--~~~~~i~~~P~l~~~~~g~ 295 (324)
+.|++-.|+.|..+...++++. +.+-.++++. +..+++ .+..|-=++|++.. .+|+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~---------v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~ 74 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN---------VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGK 74 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC---------CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCc
Confidence 5799999999987776666554 2333344433 001111 23455558999854 7776
Q ss_pred ee
Q psy14086 296 RT 297 (324)
Q Consensus 296 ~~ 297 (324)
.+
T Consensus 75 vV 76 (85)
T COG4545 75 VV 76 (85)
T ss_pred EE
Confidence 65
No 447
>PRK09301 circadian clock protein KaiB; Provisional
Probab=77.25 E-value=7.8 Score=27.33 Aligned_cols=72 Identities=10% Similarity=0.099 Sum_probs=50.1
Q ss_pred EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCC
Q psy14086 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR 304 (324)
Q Consensus 228 ~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~ 304 (324)
++=.|.+..-+.++.....+.++...++.+ .+.+-.+|... ++++++.++|-..||++=.-.. ...+.-|..
T Consensus 8 ~LrLyVag~tp~S~~ai~nL~~icE~~l~g--~y~LeVIDv~~--qPelAE~~~IvATPTLIK~~P~-P~rriiGDl 79 (103)
T PRK09301 8 ILKLYVAGNTPNSVRALKTLKNILETEFKG--VYALKVIDVLK--NPQLAEEDKILATPTLAKILPP-PVRKIIGDL 79 (103)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCC--ceEEEEEEccc--CHhHHhHCCeEEecHHhhcCCC-Ccceeeccc
Confidence 444566666666777777777777565555 58888899999 9999999999999998533211 223345663
No 448
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=76.09 E-value=2.4 Score=30.25 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=16.7
Q ss_pred EEEeCCCChhhhhhhHhHHHH
Q psy14086 230 IKFFAPWCGHCKRLAPTWEEL 250 (324)
Q Consensus 230 v~f~~~~c~~C~~~~~~~~~~ 250 (324)
.+|+.|+|+.|+.....+++-
T Consensus 2 ~iy~~~~C~~crka~~~L~~~ 22 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR 22 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc
Confidence 578899999999987666544
No 449
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=76.00 E-value=27 Score=26.12 Aligned_cols=74 Identities=19% Similarity=0.318 Sum_probs=48.9
Q ss_pred cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCC----ccceEEEEecCeeeeeecC
Q psy14086 227 TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD----GFPSIYVYKNGVRTAEYNG 302 (324)
Q Consensus 227 ~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~----~~P~l~~~~~g~~~~~~~g 302 (324)
.-++.+++|.|+=|..-...++.. .+.+-.+..+. ...+.++++|. +==|.+ -+| ...+|
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~~---------Gf~Vk~~~~~d--~~alK~~~gIp~e~~SCHT~V--I~G---y~vEG 89 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKAN---------GFEVKVVETDD--FLALKRRLGIPYEMQSCHTAV--ING---YYVEG 89 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHhC---------CcEEEEeecCc--HHHHHHhcCCChhhccccEEE--EcC---EEEec
Confidence 467889999999998776665521 34555555555 56777778885 112332 344 23578
Q ss_pred CCCHHHHHHHHHhh
Q psy14086 303 SRDLEELYQFILKH 316 (324)
Q Consensus 303 ~~~~~~l~~fi~~~ 316 (324)
-...+.+..++.+-
T Consensus 90 HVPa~aI~~ll~~~ 103 (149)
T COG3019 90 HVPAEAIARLLAEK 103 (149)
T ss_pred cCCHHHHHHHHhCC
Confidence 88999999998753
No 450
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=75.74 E-value=18 Score=23.13 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=40.1
Q ss_pred EEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-chhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHH
Q psy14086 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVN 180 (324)
Q Consensus 102 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~ 180 (324)
..|+.++|+.|....-.+....-. +....+|... .+.+.+......+|++. .+|... .....|.+
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~------~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~l------~es~aI~~ 67 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS------VEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLVL------YESRIIME 67 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc------cEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEEE------EcHHHHHH
Confidence 467889999999877666554333 3333444332 23444444555789664 344222 24567888
Q ss_pred HHHh
Q psy14086 181 YVSK 184 (324)
Q Consensus 181 fi~~ 184 (324)
|+.+
T Consensus 68 yL~~ 71 (73)
T cd03059 68 YLDE 71 (73)
T ss_pred HHHh
Confidence 7765
No 451
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=75.34 E-value=8 Score=31.66 Aligned_cols=43 Identities=19% Similarity=0.414 Sum_probs=34.9
Q ss_pred hhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086 143 RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPL 189 (324)
Q Consensus 143 ~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~~ 189 (324)
...++++||+++|++++ .++. ...|..+.+.+..-|++.++..
T Consensus 174 ~~~A~e~gI~gVP~fv~--d~~~--~V~Gaq~~~v~~~al~~~~~~~ 216 (225)
T COG2761 174 EAAAQEMGIRGVPTFVF--DGKY--AVSGAQPYDVLEDALRQLLAEK 216 (225)
T ss_pred HHHHHHCCCccCceEEE--cCcE--eecCCCCHHHHHHHHHHHHhcc
Confidence 45778899999999888 3222 3689999999999999998854
No 452
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=74.75 E-value=5.5 Score=31.64 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=35.3
Q ss_pred hhhhhhcCCCccceEEEEecCeeeeeecC--CCCHHHHHHHHHhhc
Q psy14086 274 KDLCNQEGVDGFPSIYVYKNGVRTAEYNG--SRDLEELYQFILKHK 317 (324)
Q Consensus 274 ~~~~~~~~i~~~P~l~~~~~g~~~~~~~g--~~~~~~l~~fi~~~~ 317 (324)
..++.++++.++||+++-.+|+....-.| -.+.+.+..++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 56788999999999999998887655566 256788998887764
No 453
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=73.71 E-value=11 Score=24.17 Aligned_cols=51 Identities=8% Similarity=0.096 Sum_probs=31.7
Q ss_pred EEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-chhhhhhCCccccceEE
Q psy14086 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-HRSICQSFDIKSYPTLL 158 (324)
Q Consensus 102 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-~~~~~~~~~i~~~P~~~ 158 (324)
++|+.++|+.|.+..-.+.+..- .+.+..+|... ...+.+......+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl------~~e~~~v~~~~~~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI------TVELREVELKNKPAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC------CcEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence 46788999999887655554432 24455555432 23455555566899775
No 454
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=73.54 E-value=2 Score=29.00 Aligned_cols=54 Identities=13% Similarity=0.251 Sum_probs=42.2
Q ss_pred EeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEE
Q psy14086 232 FFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIY 289 (324)
Q Consensus 232 f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~ 289 (324)
|-+..-..+......++.+....... .+.+-.+|... ++++++.++|-..||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~--~~~LeVIDv~~--~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGG--RYELEVIDVLE--QPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTT--TEEEEEEETTT--SHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCC--cEEEEEEEccc--CHhHHhHCCeeecceEe
Confidence 44444455667778888888665544 78999999999 99999999999999984
No 455
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=73.13 E-value=33 Score=24.95 Aligned_cols=87 Identities=14% Similarity=0.131 Sum_probs=53.8
Q ss_pred CCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEe-ccccch-----------hhhhhCCccc--cceEEEEeC
Q psy14086 98 GNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKI-DCTQHR-----------SICQSFDIKS--YPTLLWIES 162 (324)
Q Consensus 98 ~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~v-d~~~~~-----------~~~~~~~i~~--~P~~~~~~~ 162 (324)
+..+|.|. ++..+.-+.....+++....+... .+.++.+ +-.... .+.+.|++.. +-.+++=++
T Consensus 10 ~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR-di~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKD 88 (118)
T PF13778_consen 10 NRLLVVFAPSADDPRYQQQLEELQNNRCGLDER-DIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKD 88 (118)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhhhccccC-ceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCC
Confidence 33455444 234455566677777766666553 3444443 333333 7888888763 333334355
Q ss_pred CeEeeeecCCCCHHHHHHHHHhh
Q psy14086 163 GKKLDKFQGSRTLETLVNYVSKM 185 (324)
Q Consensus 163 g~~~~~~~g~~~~~~i~~fi~~~ 185 (324)
|+...++....+.+.|-+.|...
T Consensus 89 G~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 89 GGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred CcEEEecCCCCCHHHHHHHHhCC
Confidence 87777889999999999988764
No 456
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=72.93 E-value=7.2 Score=31.01 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=34.9
Q ss_pred hhhhhhCCccccceEEEEeCCeEeeeecC--CCCHHHHHHHHHhhh
Q psy14086 143 RSICQSFDIKSYPTLLWIESGKKLDKFQG--SRTLETLVNYVSKMK 186 (324)
Q Consensus 143 ~~~~~~~~i~~~P~~~~~~~g~~~~~~~g--~~~~~~i~~fi~~~~ 186 (324)
..+++++|+.++||+.+-++|+....=.| ..+.+++..++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 56889999999999999999877655556 246788888887654
No 457
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=71.53 E-value=36 Score=24.74 Aligned_cols=42 Identities=24% Similarity=0.314 Sum_probs=31.2
Q ss_pred hhhhhcCCC--ccceEEEEecCeeeeeecCCCCHHHHHHHHHhh
Q psy14086 275 DLCNQEGVD--GFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316 (324)
Q Consensus 275 ~~~~~~~i~--~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~ 316 (324)
.+.+.|++. ++-.+++=++|+....+.++.+.++|-+.|.+.
T Consensus 68 ~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 68 ALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred HHHHHhCCCCCceEEEEEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 777888865 333444448898877888899999999988753
No 458
>PHA03075 glutaredoxin-like protein; Provisional
Probab=71.42 E-value=7.7 Score=27.86 Aligned_cols=28 Identities=25% Similarity=0.549 Sum_probs=23.8
Q ss_pred CcEEEEEeCCCChhhhhhhHhHHHHHHH
Q psy14086 226 GTVFIKFFAPWCGHCKRLAPTWEELGTK 253 (324)
Q Consensus 226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~ 253 (324)
+.++|.|..|-|+-|+.....+.++..+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~lede 29 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDE 29 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcc
Confidence 3578999999999999999988777744
No 459
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=71.03 E-value=7.7 Score=30.72 Aligned_cols=39 Identities=21% Similarity=0.411 Sum_probs=30.4
Q ss_pred cchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHH
Q psy14086 141 QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS 183 (324)
Q Consensus 141 ~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~ 183 (324)
++...+..+||.++|++++ +|+ ..+.|....+.|.+.|+
T Consensus 155 ~~~~~a~~~gv~GvP~~vv--~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 155 EDTAEARQLGVFGVPTFVV--NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHHHHHTTCSSSSEEEE--TTT--EEEESCSSHHHHHHHH-
T ss_pred HHHHHHHHcCCcccCEEEE--CCE--EEEECCCCHHHHHHHhC
Confidence 3456778899999999998 665 45789999998888763
No 460
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=70.59 E-value=12 Score=35.77 Aligned_cols=76 Identities=20% Similarity=0.339 Sum_probs=51.5
Q ss_pred ccccccc-cCCcEEEEEeCCCChhhhhhhH-hH--HHHHHHhhcCCCCeEEEEEecCCccchhhhhhcC--------CCc
Q psy14086 217 ENFNDVI-KSGTVFIKFFAPWCGHCKRLAP-TW--EELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEG--------VDG 284 (324)
Q Consensus 217 ~~~~~~~-~~~~~~v~f~~~~c~~C~~~~~-~~--~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~--------i~~ 284 (324)
+.|.+.- +++|+++.....||.-|.-|.. .+ .++| +..+. .+.-++||-++ -+++-+.|. ..+
T Consensus 34 eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA-~~lN~--~FV~IKVDREE--RPDvD~~Ym~~~q~~tG~GG 108 (667)
T COG1331 34 EAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIA-AILNE--NFVPVKVDREE--RPDVDSLYMNASQAITGQGG 108 (667)
T ss_pred HHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHH-HHHHh--CceeeeEChhh--ccCHHHHHHHHHHHhccCCC
Confidence 3355544 3579999999999999988644 33 3566 44544 67888888766 566544442 458
Q ss_pred cceEEEE-ecCeee
Q psy14086 285 FPSIYVY-KNGVRT 297 (324)
Q Consensus 285 ~P~l~~~-~~g~~~ 297 (324)
.|.-+|. ++|+.+
T Consensus 109 WPLtVfLTPd~kPF 122 (667)
T COG1331 109 WPLTVFLTPDGKPF 122 (667)
T ss_pred CceeEEECCCCcee
Confidence 9976666 677764
No 461
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=70.56 E-value=23 Score=28.42 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=31.3
Q ss_pred chhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHh
Q psy14086 273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILK 315 (324)
Q Consensus 273 ~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~ 315 (324)
++.+.+.|+|+.+|++++. .+..+....|..+...-.+.+..
T Consensus 151 DP~lF~~F~I~~VPafVv~-C~~~yD~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVF-CSQGYDIIRGNLRVGQALEKVAA 192 (212)
T ss_pred CHHHHHhcCCccccEEEEE-cCCCCCEEEecccHHHHHHHHHh
Confidence 5899999999999999986 44455566788887655555543
No 462
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=70.44 E-value=6.5 Score=31.14 Aligned_cols=38 Identities=13% Similarity=0.314 Sum_probs=30.0
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC 139 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~ 139 (324)
+..|+...|+.|-...+.++++...+.+ -.+.+..+..
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~-~~i~~~p~~l 39 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPD-VEIEWRPFPL 39 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTT-CEEEEEEESS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcC-CcEEEecccc
Confidence 6789999999999999999999999933 2455555543
No 463
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=70.44 E-value=43 Score=25.13 Aligned_cols=89 Identities=10% Similarity=0.088 Sum_probs=57.4
Q ss_pred cCCCEEEEEeCCCCHhHhhHHHHH---HHHHHhcCCCCCeEEEEeccccch------------------hhhhhCCcccc
Q psy14086 96 SLGNHFVKFYAPWCGHCQSLAPVW---QELASHFKTEEDVSIAKIDCTQHR------------------SICQSFDIKSY 154 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~i~~~~vd~~~~~------------------~~~~~~~i~~~ 154 (324)
+.+..+|+..++....+..+.... +.+.+-+++ ++.+-..|++... ..++.++...+
T Consensus 20 e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~--nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~f 97 (136)
T cd02990 20 DRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQ--NFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQL 97 (136)
T ss_pred hcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHc--CEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCC
Confidence 345678888887764433332211 233333344 6888888876432 24556778899
Q ss_pred ceEEEEeCC----eEeeeecCCCCHHHHHHHHHhhh
Q psy14086 155 PTLLWIESG----KKLDKFQGSRTLETLVNYVSKMK 186 (324)
Q Consensus 155 P~~~~~~~g----~~~~~~~g~~~~~~i~~fi~~~~ 186 (324)
|.+.++... ..+.+..|..+++++.+-+...+
T Consensus 98 P~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 98 PAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred CeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 988777432 45567889999999998887654
No 464
>KOG1364|consensus
Probab=70.19 E-value=9 Score=33.26 Aligned_cols=59 Identities=14% Similarity=0.295 Sum_probs=48.5
Q ss_pred CeEEEEeccccchhhhhhCCccccceEEEEeC--CeEeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086 131 DVSIAKIDCTQHRSICQSFDIKSYPTLLWIES--GKKLDKFQGSRTLETLVNYVSKMKGPL 189 (324)
Q Consensus 131 ~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~--g~~~~~~~g~~~~~~i~~fi~~~~~~~ 189 (324)
.+..+..|..+...+...|.+...|.+.++++ |+.+.+..|.+.++++..-+++++..-
T Consensus 132 ~wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~~ 192 (356)
T KOG1364|consen 132 RWLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFIDSC 192 (356)
T ss_pred eEEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHhcC
Confidence 56666777778889999999999999999987 778887888888888888888777643
No 465
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=69.98 E-value=13 Score=23.08 Aligned_cols=53 Identities=15% Similarity=0.183 Sum_probs=29.7
Q ss_pred EEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEE
Q psy14086 231 KFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYV 290 (324)
Q Consensus 231 ~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~ 290 (324)
.|+.++|+.|...+-.+..... .+....++.......++.+......+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i-------~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGL-------PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCC-------CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 5777899999987766555431 2344444433310112344455667898753
No 466
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.39 E-value=10 Score=31.02 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=33.3
Q ss_pred hhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHhhcccCC
Q psy14086 275 DLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESH 321 (324)
Q Consensus 275 ~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~~~ 321 (324)
..+...||+++|++++ +|+. .-+|..+.+-+..-|.+.++...
T Consensus 175 ~~A~e~gI~gVP~fv~--d~~~--~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DGKY--AVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHHCCCccCceEEE--cCcE--eecCCCCHHHHHHHHHHHHhccc
Confidence 3456789999999988 3332 35799999999999998877544
No 467
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=67.83 E-value=31 Score=22.42 Aligned_cols=71 Identities=13% Similarity=0.166 Sum_probs=46.3
Q ss_pred EEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-chhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHH
Q psy14086 103 KFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNY 181 (324)
Q Consensus 103 ~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~f 181 (324)
+|..++|+.|.+..-.++...- .+.+..++... ...+.+...-..+|++. .+|..+ .+...|.++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i------~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l------~dS~~I~~y 66 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI------PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL------TDSAAIIEY 66 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE------EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE------ESHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC------eEEEeccCcccchhHHHhhcccccceEEE--ECCEEE------eCHHHHHHH
Confidence 3677899999987755554432 24445555443 34555566666899886 456543 267789999
Q ss_pred HHhhhC
Q psy14086 182 VSKMKG 187 (324)
Q Consensus 182 i~~~~~ 187 (324)
+.+...
T Consensus 67 L~~~~~ 72 (75)
T PF13417_consen 67 LEERYP 72 (75)
T ss_dssp HHHHST
T ss_pred HHHHcC
Confidence 998776
No 468
>PHA03075 glutaredoxin-like protein; Provisional
Probab=67.37 E-value=8.1 Score=27.76 Aligned_cols=29 Identities=24% Similarity=0.634 Sum_probs=24.5
Q ss_pred CCEEEEEeCCCCHhHhhHHHHHHHHHHhc
Q psy14086 98 GNHFVKFYAPWCGHCQSLAPVWQELASHF 126 (324)
Q Consensus 98 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~ 126 (324)
+..++.|-.|.|+-|+.....+.++..+|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 35689999999999999998887777665
No 469
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=67.24 E-value=5 Score=28.89 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=42.5
Q ss_pred EEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC--ccchhhhhhcCCCccceEEEEe-cCeeeee--ecC--
Q psy14086 230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ--ELSKDLCNQEGVDGFPSIYVYK-NGVRTAE--YNG-- 302 (324)
Q Consensus 230 v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~--~~~~~~~~~~~i~~~P~l~~~~-~g~~~~~--~~g-- 302 (324)
..|+.++|+.|+.....|++- ++.|-.+|... ....++.+..+..+.|..-+++ .|..+.. ..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~---------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 72 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH---------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKL 72 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc---------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCccccc
Confidence 468889999999988666653 34555555543 1123444444444555444443 3332211 111
Q ss_pred -CCCHHHHHHHHHhh
Q psy14086 303 -SRDLEELYQFILKH 316 (324)
Q Consensus 303 -~~~~~~l~~fi~~~ 316 (324)
..+.+++.+.|.++
T Consensus 73 ~~~s~~e~~~~l~~~ 87 (111)
T cd03036 73 PSLSEEEALELLSSD 87 (111)
T ss_pred ccCCHHHHHHHHHhC
Confidence 23567777777664
No 470
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.13 E-value=4.9 Score=26.31 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=18.2
Q ss_pred EEEeCCCCHhHhhHHHHHHHHH
Q psy14086 102 VKFYAPWCGHCQSLAPVWQELA 123 (324)
Q Consensus 102 v~f~~~~c~~c~~~~~~~~~la 123 (324)
++|++..|+.|..+...++++.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~ 26 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN 26 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC
Confidence 6899999999998777777654
No 471
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=67.06 E-value=23 Score=27.78 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=32.9
Q ss_pred ccCCcEEEEEeCCCCh-hhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC
Q psy14086 223 IKSGTVFIKFFAPWCG-HCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270 (324)
Q Consensus 223 ~~~~~~~v~f~~~~c~-~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~ 270 (324)
..++.++|.|.-..|+ -|-.....+.++.+++.....++.+..|.++-
T Consensus 50 ~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 50 LKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp GTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred hCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 3467888889889997 59888888877776544433456666666653
No 472
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=66.39 E-value=12 Score=23.20 Aligned_cols=52 Identities=12% Similarity=0.078 Sum_probs=30.9
Q ss_pred EEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch--hhhhhCCccccceEEE
Q psy14086 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR--SICQSFDIKSYPTLLW 159 (324)
Q Consensus 102 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~--~~~~~~~i~~~P~~~~ 159 (324)
..|+.++|+.|......++...-. +....++..... .+.+..+-..+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~------~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLP------YELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC------cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 357789999999877666665322 334444433222 2444556667897653
No 473
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=66.26 E-value=6.4 Score=29.32 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=17.0
Q ss_pred EEEEeCCCChhhhhhhHhHHHH
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEEL 250 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~ 250 (324)
+..|+.++|+.|+.....+++.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~ 23 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 4578889999999987666543
No 474
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=66.18 E-value=6.4 Score=27.86 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=22.1
Q ss_pred EEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc
Q psy14086 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140 (324)
Q Consensus 102 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~ 140 (324)
..|+.++|+.|+.....+++. ++.|-.+|..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~ 32 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH--------GIEYEFIDYL 32 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCCcEEEeec
Confidence 578999999999987666663 3455555554
No 475
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=64.70 E-value=7.3 Score=27.72 Aligned_cols=20 Identities=5% Similarity=0.051 Sum_probs=16.2
Q ss_pred EEEeCCCCHhHhhHHHHHHH
Q psy14086 102 VKFYAPWCGHCQSLAPVWQE 121 (324)
Q Consensus 102 v~f~~~~c~~c~~~~~~~~~ 121 (324)
..|+.|+|+.|+.....+.+
T Consensus 2 ~iy~~~~C~~crka~~~L~~ 21 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA 21 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 57899999999987766655
No 476
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=64.56 E-value=12 Score=27.16 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=23.5
Q ss_pred EEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc
Q psy14086 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH 142 (324)
Q Consensus 102 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~ 142 (324)
..|+.++|+.|+.....+++. ++.|-.+|..+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN--------GIEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc--------CCceEEEecCCC
Confidence 468999999999988776662 355666665543
No 477
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=64.11 E-value=12 Score=23.97 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=31.5
Q ss_pred EEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc----cchhhhhhCCccccceEEE
Q psy14086 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT----QHRSICQSFDIKSYPTLLW 159 (324)
Q Consensus 102 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~----~~~~~~~~~~i~~~P~~~~ 159 (324)
.+|+.++|+.|....-.+....-.| ....++.. ....+.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~------~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDV------PLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCc------eEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 4678899999998887766654333 33334321 2234445455557898864
No 478
>PRK12559 transcriptional regulator Spx; Provisional
Probab=62.56 E-value=8.3 Score=28.73 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=17.1
Q ss_pred EEEEeCCCChhhhhhhHhHHHH
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEEL 250 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~ 250 (324)
+.+|+.++|+.|+.....|++-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~ 23 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5678899999999987665543
No 479
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.47 E-value=36 Score=23.91 Aligned_cols=68 Identities=21% Similarity=0.340 Sum_probs=39.9
Q ss_pred hhHHHHhcCCCEEEEEe-----CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCcc-ccceE-EEEe
Q psy14086 89 ESFEKYVSLGNHFVKFY-----APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIK-SYPTL-LWIE 161 (324)
Q Consensus 89 ~~f~~~~~~~~~~v~f~-----~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~-~~P~~-~~~~ 161 (324)
+..++.++++++++ |. .|.|+...+....+..+. -+.|+.+|+-.++++.+.+.-- ..||+ -+|-
T Consensus 6 ~~I~~~i~~n~VvL-FMKGtp~~P~CGFS~~~vqiL~~~g-------~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi 77 (105)
T COG0278 6 DRIQKQIKENPVVL-FMKGTPEFPQCGFSAQAVQILSACG-------VVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYV 77 (105)
T ss_pred HHHHHHhhcCceEE-EecCCCCCCCCCccHHHHHHHHHcC-------CcceeEEeeccCHHHHhccHhhcCCCCCceeeE
Confidence 34455566666544 43 366887777666555432 2678889988888877755322 34554 2333
Q ss_pred CCe
Q psy14086 162 SGK 164 (324)
Q Consensus 162 ~g~ 164 (324)
+|+
T Consensus 78 ~GE 80 (105)
T COG0278 78 NGE 80 (105)
T ss_pred CCE
Confidence 553
No 480
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=60.82 E-value=16 Score=29.34 Aligned_cols=43 Identities=19% Similarity=0.321 Sum_probs=33.4
Q ss_pred cchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHh
Q psy14086 141 QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184 (324)
Q Consensus 141 ~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~ 184 (324)
-++.+.++|+|+.+|++++... ..+.+..|..+...-.+.+..
T Consensus 150 IDP~lF~~F~I~~VPafVv~C~-~~yD~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVFCS-QGYDIIRGNLRVGQALEKVAA 192 (212)
T ss_pred ECHHHHHhcCCccccEEEEEcC-CCCCEEEecccHHHHHHHHHh
Confidence 4688999999999999999744 455567788887776666654
No 481
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=60.72 E-value=7.5 Score=28.23 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=22.8
Q ss_pred EEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC
Q psy14086 230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270 (324)
Q Consensus 230 v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~ 270 (324)
..|+.++|+.|+.....+++. ++.|-.+|...
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~---------~i~~~~idi~~ 33 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN---------GIEYQFIDIGE 33 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc---------CCceEEEecCC
Confidence 468889999999988776653 34555666544
No 482
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=58.46 E-value=52 Score=29.02 Aligned_cols=84 Identities=20% Similarity=0.249 Sum_probs=48.8
Q ss_pred eCCCChhhhh-hhHhHHHHHHHhhcCCCCeEEEEEecC-CccchhhhhhcCCCc-cceEEEEecCeeeeeecCCCCHHHH
Q psy14086 233 FAPWCGHCKR-LAPTWEELGTKLLDNKHGIVIAKVDCT-QELSKDLCNQEGVDG-FPSIYVYKNGVRTAEYNGSRDLEEL 309 (324)
Q Consensus 233 ~~~~c~~C~~-~~~~~~~~a~~~~~~~~~~~~~~id~~-~~~~~~~~~~~~i~~-~P~l~~~~~g~~~~~~~g~~~~~~l 309 (324)
..|.|+.|.. ......++-+.+......+.++.+-|- ..-.+.....+|+.+ -+...+|.+|+.+....+..-.+.|
T Consensus 270 sCPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l 349 (360)
T PRK00366 270 SCPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEEL 349 (360)
T ss_pred ECCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHH
Confidence 3456666654 444555665444444345888888884 311233345677764 4567888999987666654334455
Q ss_pred HHHHHhh
Q psy14086 310 YQFILKH 316 (324)
Q Consensus 310 ~~fi~~~ 316 (324)
.+-|.+.
T Consensus 350 ~~~i~~~ 356 (360)
T PRK00366 350 EAEIEAY 356 (360)
T ss_pred HHHHHHH
Confidence 5544433
No 483
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=58.33 E-value=21 Score=25.51 Aligned_cols=63 Identities=19% Similarity=0.425 Sum_probs=40.8
Q ss_pred EeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCcc--ccceEEE-EeCCeEeeeecCC
Q psy14086 104 FYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIK--SYPTLLW-IESGKKLDKFQGS 172 (324)
Q Consensus 104 f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~--~~P~~~~-~~~g~~~~~~~g~ 172 (324)
||..+|+.|......+..... ...+.|+.+.......+.+.++++ ..-+.+. ..+|+.. |.|.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~--~~G~ 67 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR----GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGERV--YRGS 67 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC----CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCCEE--EEcH
Confidence 789999999998877777621 226888877545555666777876 3444444 4556522 4444
No 484
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=57.97 E-value=11 Score=27.18 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=17.1
Q ss_pred EEEEeCCCChhhhhhhHhHHHH
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEEL 250 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~ 250 (324)
+..|+.++|+.|+.....+++.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~ 23 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH 23 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 3478889999999987666653
No 485
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=57.70 E-value=14 Score=27.55 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=16.6
Q ss_pred EEEEeCCCCHhHhhHHHHHHH
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQE 121 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~ 121 (324)
+..|..++|+.|+.....|++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~ 22 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 457899999999987765554
No 486
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=57.33 E-value=30 Score=28.45 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=36.9
Q ss_pred CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCC-CCeEEEEEecCC
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNK-HGIVIAKVDCTQ 270 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~-~~~~~~~id~~~ 270 (324)
+..++|.+...+|..|......++.|..++...+ .+|.|..||-..
T Consensus 26 G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~ 72 (238)
T PF04592_consen 26 GHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQG 72 (238)
T ss_pred CcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCC
Confidence 5678999999999999998888888886655443 479999999654
No 487
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=56.67 E-value=12 Score=26.82 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=22.7
Q ss_pred EEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc
Q psy14086 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141 (324)
Q Consensus 102 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~ 141 (324)
..|..++|+.|+.....|++. ++.|-.+|..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~ 33 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH--------GVDYTAIDIVE 33 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCceEEecccC
Confidence 468999999999887666652 35566666543
No 488
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=52.83 E-value=15 Score=27.43 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=15.8
Q ss_pred EEEEeCCCChhhhhhhHhHHH
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEE 249 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~ 249 (324)
+..|+.++|+.|+.....+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA 22 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 457888999999987655543
No 489
>COG3411 Ferredoxin [Energy production and conversion]
Probab=52.68 E-value=28 Score=22.15 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=24.6
Q ss_pred ccceEEEEecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086 284 GFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKV 318 (324)
Q Consensus 284 ~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~ 318 (324)
.=|.+++|++| .-| +..+.+...+++++++.
T Consensus 16 ~gPvl~vYpeg---vWY-~~V~p~~a~rIv~~hl~ 46 (64)
T COG3411 16 DGPVLVVYPEG---VWY-TRVDPEDARRIVQSHLL 46 (64)
T ss_pred cCCEEEEecCC---eeE-eccCHHHHHHHHHHHHh
Confidence 36999999998 224 45799999999998875
No 490
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=52.43 E-value=19 Score=23.18 Aligned_cols=51 Identities=14% Similarity=0.275 Sum_probs=31.4
Q ss_pred EEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc----chhhhhhCCccccceEE
Q psy14086 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----HRSICQSFDIKSYPTLL 158 (324)
Q Consensus 102 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~----~~~~~~~~~i~~~P~~~ 158 (324)
..|+.++|+.|+...-.+....-. +....+|... .+.+.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~------~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE------LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC------CEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 468899999998777666654333 3334444321 24555555556799885
No 491
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=51.64 E-value=1.1e+02 Score=23.61 Aligned_cols=40 Identities=20% Similarity=0.107 Sum_probs=27.9
Q ss_pred hhhhhcCCCcc-ceEEEE-ecCeeeeeecCCCCHHHHHHHHH
Q psy14086 275 DLCNQEGVDGF-PSIYVY-KNGVRTAEYNGSRDLEELYQFIL 314 (324)
Q Consensus 275 ~~~~~~~i~~~-P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~ 314 (324)
.+.+.+++..- -+++++ ++|+.....+|.++.+++.++|.
T Consensus 114 ~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~ 155 (160)
T PF09695_consen 114 VVRKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIA 155 (160)
T ss_pred ceeccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHH
Confidence 34455666543 345555 57887778899999999988875
No 492
>PRK12559 transcriptional regulator Spx; Provisional
Probab=51.50 E-value=20 Score=26.69 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=16.4
Q ss_pred EEEEeCCCCHhHhhHHHHHHH
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQE 121 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~ 121 (324)
+..|..++|+.|+.....|++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 467899999999987655554
No 493
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=50.81 E-value=34 Score=28.20 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=35.4
Q ss_pred CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC--CCeEEEEeccc
Q psy14086 97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTE--EDVSIAKIDCT 140 (324)
Q Consensus 97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~--~~i~~~~vd~~ 140 (324)
....+|.+...+|..|..-...|+.|..++... .+|.|+.||-.
T Consensus 26 G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 26 GHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred CcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 345688899999999998888888888777553 37999999865
No 494
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=50.72 E-value=18 Score=26.13 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=16.1
Q ss_pred EEEEeCCCChhhhhhhHhHHH
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEE 249 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~ 249 (324)
+..|+.|.|+.|+.....+++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~ 22 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA 22 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 457888999999987755544
No 495
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=50.44 E-value=22 Score=25.70 Aligned_cols=21 Identities=19% Similarity=0.490 Sum_probs=16.9
Q ss_pred EEEEeCCCCHhHhhHHHHHHH
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQE 121 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~ 121 (324)
+..|+.++|+.|+.....|++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~ 22 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEE 22 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 357889999999987766665
No 496
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=47.58 E-value=45 Score=26.15 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=26.9
Q ss_pred cCCCEEEEEeCCCCH-hHhhHHHHHHHHHHhcCCC-CCeEEEEec
Q psy14086 96 SLGNHFVKFYAPWCG-HCQSLAPVWQELASHFKTE-EDVSIAKID 138 (324)
Q Consensus 96 ~~~~~~v~f~~~~c~-~c~~~~~~~~~la~~~~~~-~~i~~~~vd 138 (324)
..++++|.|.-+.|+ .|-.....+.++.+++... .++.++.|-
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~IS 95 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFIS 95 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEE
Confidence 455668888888885 5877777777777766542 244444433
No 497
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=46.99 E-value=64 Score=21.78 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=32.3
Q ss_pred EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc-hhhhhhCCccccceEEE
Q psy14086 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH-RSICQSFDIKSYPTLLW 159 (324)
Q Consensus 101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~-~~~~~~~~i~~~P~~~~ 159 (324)
+..|+.+.|+.|....-.+....-. +.+..++.... ..+.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~------~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIP------HEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCC------CeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 5667888999999776555554322 44445554332 23455555667898763
No 498
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=46.68 E-value=21 Score=25.47 Aligned_cols=58 Identities=14% Similarity=0.224 Sum_probs=35.0
Q ss_pred EEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCC--ccceEEE-EecCe
Q psy14086 231 KFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD--GFPSIYV-YKNGV 295 (324)
Q Consensus 231 ~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~--~~P~l~~-~~~g~ 295 (324)
.||..+|+-|......+.... ....+.|+.+.... ..++.+.++++ ...+.+. ..+|+
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d-----~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRD-----RGGRLRFVDIQSEP--DQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcC-----CCCCEEEEECCChh--hhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 379999999999887776663 11246665553222 34445667765 3444444 35665
No 499
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=45.05 E-value=24 Score=25.72 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=18.5
Q ss_pred EEEEeCCCChhhhhhhHhHHHHH
Q psy14086 229 FIKFFAPWCGHCKRLAPTWEELG 251 (324)
Q Consensus 229 ~v~f~~~~c~~C~~~~~~~~~~a 251 (324)
+..|+.|.|+.|+.....+++-.
T Consensus 3 itiy~~p~C~t~rka~~~L~~~g 25 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHG 25 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcC
Confidence 56788999999999887776654
No 500
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=44.27 E-value=1.3e+02 Score=22.67 Aligned_cols=67 Identities=13% Similarity=0.220 Sum_probs=0.0
Q ss_pred CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCC--ccceEEEEecCeeee
Q psy14086 225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD--GFPSIYVYKNGVRTA 298 (324)
Q Consensus 225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~--~~P~l~~~~~g~~~~ 298 (324)
+++-.|++|...|.-|-.....+.+.- ... .+.|+.+..+. ...+.+..++. ..=++++..+|....
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D---~~~--~i~f~~~q~e~--g~~~l~~~~l~~~~~~s~~~~~~g~~~~ 74 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRD---QGG--RIRFAALQSEP--GQALLEAAGLDPEDVDSVLLVEAGQLLV 74 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhc---cCC--cEEEEeccCch--hhhHHhhcCCChhhhheeeEecCCceEe
Done!