RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14086
(324 letters)
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 243 bits (621), Expect = 3e-80
Identities = 76/253 (30%), Positives = 139/253 (54%), Gaps = 26/253 (10%)
Query: 67 SETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASH 125
+ + + ++ L + +F+ +V+ + ++FYAPWCGHC+ AP ++++A+
Sbjct: 6 EDDLEVKEENGVL-----VLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANI 60
Query: 126 FKTEE-DVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
K ++ + +AKID T + FD+ YPT+ ++ G+ +D ++GSRT E +V V +
Sbjct: 61 LKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQAVD-YEGSRTQEEIVAKVRE 119
Query: 185 MKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRL 243
+ P + PE + LT ENF++V+ + ++F+APWCGHCK+L
Sbjct: 120 VSQP--------------DWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKL 165
Query: 244 APTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGS 303
AP +E+ +L I +AKVD T E DL + V G+P++ +++ G R +YNG
Sbjct: 166 APEYEKAAKELSKRSPPIPLAKVDATAE--TDLAKRFDVSGYPTLKIFRKG-RPYDYNGP 222
Query: 304 RDLEELYQFILKH 316
R+ + ++++
Sbjct: 223 REKYGIVDYMIEQ 235
Score = 173 bits (440), Expect = 5e-53
Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 12/185 (6%)
Query: 6 EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
+D + + ++D T L + +++GYPT+K KKG +A + G+R + + E
Sbjct: 64 KDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKG---QAVDYEGSRTQEEIVAKVREV 120
Query: 66 ISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELAS 124
P E + LT+E+F++ V+ + V+FYAPWCGHC+ LAP +++ A
Sbjct: 121 SQPDWTPP------PEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAK 174
Query: 125 HFKTEED-VSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS 183
+ +AK+D T + + FD+ YPTL G+ D + G R +V+Y+
Sbjct: 175 ELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYD-YNGPREKYGIVDYMI 233
Query: 184 KMKGP 188
+ G
Sbjct: 234 EQSGA 238
Score = 139 bits (352), Expect = 5e-40
Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 12/138 (8%)
Query: 187 GPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAP 245
GPL + D E V+ L NF++ + TV ++F+APWCGHCK+ AP
Sbjct: 1 GPLGSEDDLEVKE--------ENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAP 52
Query: 246 TWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRD 305
+E++ L D I +AK+D T L ++ V G+P+I + K G +Y GSR
Sbjct: 53 EYEKIANILKDKDPPIPVAKIDATSA--SVLASRFDVSGYPTIKILKKGQAV-DYEGSRT 109
Query: 306 LEELYQFILKHKVESHDE 323
EE+ + +
Sbjct: 110 QEEIVAKVREVSQPDWTP 127
Score = 63.7 bits (155), Expect = 5e-12
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 4 DSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFIN 63
+ + +VD T E L +++GYPTLK F+KG + G R+ + +++
Sbjct: 177 SKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKG---RPYDYNGPREKYGIVDYMI 233
Query: 64 EQ 65
EQ
Sbjct: 234 EQ 235
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 255 bits (652), Expect = 4e-79
Identities = 72/345 (20%), Positives = 124/345 (35%), Gaps = 66/345 (19%)
Query: 2 LNDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNF 61
+ ++ +G +DCT+ + LC I YPT F + ++ G + F
Sbjct: 480 ASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQS---SIHEYEGHHSAEQILEF 536
Query: 62 INEQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH----FVKFYAPWCGHCQSLAP 117
I + N +V LT +F + V H V FY+PW Q L P
Sbjct: 537 IEDL-------------RNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMP 583
Query: 118 VWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKK-----LDKFQGS 172
W+ +A +++ +DC Q+ S C +++ YP + + +
Sbjct: 584 EWKRMARTLT--GLINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWN 641
Query: 173 RTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGT--VFI 230
R +L ++ P+ + LT + FN+ + G +
Sbjct: 642 RDAYSLRSWGLGFL---------------------PQASIDLTPQTFNEKVLQGKTHWVV 680
Query: 231 KFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYV 290
F+APW G + AP +E L + + KVDC C + G+ +PS+ +
Sbjct: 681 DFYAPWSGPSQNFAPEFELLARMIKGK---VRAGKVDCQAY--PQTCQKAGIKAYPSVKL 735
Query: 291 YKNG----VRTAEYNGSRDLEELYQFILKH-------KVESHDEL 324
Y+ E SRD + + I + DEL
Sbjct: 736 YQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQVKRNKDEL 780
Score = 225 bits (574), Expect = 7e-68
Identities = 69/327 (21%), Positives = 125/327 (38%), Gaps = 53/327 (16%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
+ + + + DC+ +C+D + P+L FK E G + L + F E
Sbjct: 380 NEHIQVVRFDCSSAPGICSDLYVF-QPSLAVFKGQGTKEYEIHHGKKILYDILAFAKES- 437
Query: 67 SETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHF 126
VN + L ++F V F+APW ++L P ++ ++
Sbjct: 438 ------------VNSHVTTLGPQNFPASDK-EPWLVDFFAPWSPPSRALLPELRKASTLL 484
Query: 127 KTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK 186
+ + +DCT H +C ++I++YPT + + ++G + E ++ ++ ++
Sbjct: 485 Y--GQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSIHE-YEGHHSAEQILEFIEDLR 541
Query: 187 GPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGT----VFIKFFAPWCGHCKR 242
P VVSLT FN+++K + F++PW +
Sbjct: 542 NP---------------------SVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQV 580
Query: 243 LAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEY-- 300
L P W+ + L I + VDC Q C QE V +P I Y A
Sbjct: 581 LMPEWKRMARTLTGL---INVGSVDCGQY--HSFCTQENVQRYPEIRFYPQKSSKAYQYH 635
Query: 301 ---NGSRDLEELYQFILKHKVESHDEL 324
+RD L + L ++ +L
Sbjct: 636 SYNGWNRDAYSLRSWGLGFLPQASIDL 662
Score = 179 bits (454), Expect = 7e-51
Identities = 56/321 (17%), Positives = 109/321 (33%), Gaps = 41/321 (12%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
D + IG V+C ++ LC + + YP+L F+ G + K+ G R +L F + +
Sbjct: 163 DGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAV--KYNGDRSKESLVAFAMQHV 220
Query: 67 SETPKEPSDKPIVNEGLVELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASH 125
+ V EL+ +F + V + +C + L
Sbjct: 221 ---------RSTV----TELSTGNFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLS 267
Query: 126 FKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM 185
+ V++ +DC S+C+S D + T + D+
Sbjct: 268 GMLDGLVNVGWVDCDAQDSLCKSLDTTASTTAYFPPGATLNDRE---------------- 311
Query: 186 KGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAP 245
K + E E+ L++ D + + F + + P
Sbjct: 312 KSSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLAHHRWLVFFH--FGKNENANDP 369
Query: 246 TWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRT--AEYNGS 303
++L T L + I + + DC+ +C+ V PS+ V+K ++G
Sbjct: 370 ELKKLKTLLKNEH--IQVVRFDCSSA--PGICSDLYV-FQPSLAVFKGQGTKEYEIHHGK 424
Query: 304 RDLEELYQFILKHKVESHDEL 324
+ L ++ F + L
Sbjct: 425 KILYDILAFAKESVNSHVTTL 445
Score = 170 bits (432), Expect = 6e-48
Identities = 53/299 (17%), Positives = 95/299 (31%), Gaps = 36/299 (12%)
Query: 31 GYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELTEES 90
Y LK + + +G D D P + + +
Sbjct: 70 AYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAA 129
Query: 91 FEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFD 150
FV FY+P H LAP W+E A + + + I ++C R +C+
Sbjct: 130 VNSG---ELWFVNFYSPGSSHSHDLAPTWREFA--KEVDGLLRIGAVNCGDDRMLCRMKG 184
Query: 151 IKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEP 210
+ SYP+L SG K+ G R+ E+LV + +
Sbjct: 185 VNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRS---------------------T 223
Query: 211 VVSLTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
V L++ NF + I++ + + +C + + L + + VDC
Sbjct: 224 VTELSTGNFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLS-GMLDGLVNVGWVDCD 282
Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRT------AEYNGSRDLEELYQFILKHKVESHD 322
+ LC + Y + S D +E+Y I+ + +
Sbjct: 283 AQ--DSLCKSLDTTASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFEL 339
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 201 bits (511), Expect = 3e-62
Identities = 71/308 (23%), Positives = 119/308 (38%), Gaps = 28/308 (9%)
Query: 17 CTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDK 76
T + + ++ + F K + + F G L +FI +
Sbjct: 68 ITSNSDVFSKYQLDKDGVVLF--KKFDEGRNNFEGEVTKENLLDFIKH---------NQL 116
Query: 77 PIVNEGLVELTEESFEKYVSLG--NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSI 134
P+V +E TE++ K H + F ++ A FK +
Sbjct: 117 PLV----IEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIF 172
Query: 135 AKIDCTQHRSICQSFDIKSY--PTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKK 192
D T ++ I + F +K P + I +++ K++ T L K
Sbjct: 173 IDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGK 232
Query: 193 ADSPDAENASEVPVKPEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEEL 250
+PV L +NF DV + VF++F+APWCGHCK+LAP W++L
Sbjct: 233 IKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKL 292
Query: 251 GTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA--EYNGSRDLEE 308
G D+++ IVIAK+D T + V FP++ + +YNG R L+
Sbjct: 293 GETYKDHEN-IVIAKMDST----ANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDG 347
Query: 309 LYQFILKH 316
+F+
Sbjct: 348 FKKFLESG 355
Score = 127 bits (320), Expect = 3e-34
Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 14/187 (7%)
Query: 10 VTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKF---RGTRDLPTLTNFINEQI 66
D T +++ + E E +K+ +T F + +
Sbjct: 170 FIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFL 229
Query: 67 SETPKE-----PSDKPIVNEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVW 119
K + + + L ++FE N FV+FYAPWCGHC+ LAP+W
Sbjct: 230 EGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIW 289
Query: 120 QELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD--KFQGSRTLET 177
+L +K E++ IAK+D T + ++ + S+PTL + + + G RTL+
Sbjct: 290 DKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTLKFFPASADRTVIDYNGERTLDG 347
Query: 178 LVNYVSK 184
++
Sbjct: 348 FKKFLES 354
Score = 63.2 bits (153), Expect = 2e-11
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 6 EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
+ + I ++D T ++ +PTLKFF ++ + G R L F+
Sbjct: 298 DHENIVIAKMDSTAN--EVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLESG 355
Query: 66 IS 67
Sbjct: 356 GQ 357
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 182 bits (464), Expect = 1e-56
Identities = 44/253 (17%), Positives = 84/253 (33%), Gaps = 28/253 (11%)
Query: 80 NEGLVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEED-VSIAK 136
++ L L ++ V V+F+A WCGHC + AP W LA K + +A
Sbjct: 11 SDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAA 70
Query: 137 IDCTQ--HRSICQSFDIKSYPTLLWIESGK----KLDKFQGSRTLETLVNYVSKMKGPLN 190
+DC + + ++C+ F+I +PT+ + + ++TL + +
Sbjct: 71 LDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHH 130
Query: 191 KKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEEL 250
EP + F + + F + +A
Sbjct: 131 DTWPPA--------CPPLEPAXLEEIDGFFARNNEEYLALIFEXGGSYLAREVALDLS-- 180
Query: 251 GTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELY 310
G+ + +V T+ ++ + GV FPS Y+ + + Y
Sbjct: 181 ------QHKGVAVRRVLNTE---ANVVRKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFY 231
Query: 311 QFILKHKVESHDE 323
L+ E
Sbjct: 232 TAYLQRLSGLTRE 244
Score = 129 bits (326), Expect = 4e-36
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 6/132 (4%)
Query: 198 AENASEVPVKPEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLL 255
+ S + +P+ L ++ + ++FFA WCGHC APTW L +
Sbjct: 1 GSHMSALYSPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVK 60
Query: 256 DNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVY----KNGVRTAEYNGSRDLEELYQ 311
+ + +A +DC +E + +C + GFP++ + NG D++ L +
Sbjct: 61 AWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRE 120
Query: 312 FILKHKVESHDE 323
++ HD
Sbjct: 121 RLIDALESHHDT 132
Score = 117 bits (294), Expect = 1e-31
Identities = 25/188 (13%), Positives = 61/188 (32%), Gaps = 13/188 (6%)
Query: 5 SEDSRVTIGQVDCTVE--KQLCADQEITGYPTLKFFKKGSES--EASKFRGTRDLPTLTN 60
+ + + +DC E +C D I G+PT++FF + + A D+ TL
Sbjct: 61 AWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRE 120
Query: 61 FINEQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQ 120
+ + + E + F + + F + +A
Sbjct: 121 RLIDALESHHDTWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEXGGSYLAREVAL--- 177
Query: 121 ELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLE-TLV 179
+ V++ ++ T ++ + F + +P+ + + +
Sbjct: 178 ----DLSQHKGVAVRRVLNT-EANVVRKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFYT 232
Query: 180 NYVSKMKG 187
Y+ ++ G
Sbjct: 233 AYLQRLSG 240
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 162 bits (411), Expect = 2e-50
Identities = 50/109 (45%), Positives = 75/109 (68%), Gaps = 2/109 (1%)
Query: 208 PEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVD 267
V++LT NF+D I G FIKF+APWCGHCK LAPTWEEL K G+ IA+VD
Sbjct: 4 GSTVLALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVD 63
Query: 268 CTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
CT E +++C++ V G+P++ +++ G + +E++G RDL+ L++F+L
Sbjct: 64 CTAE--RNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLSQ 110
Score = 145 bits (368), Expect = 6e-44
Identities = 44/102 (43%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 84 VELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCTQH 142
+ LTE +F+ ++ G F+KFYAPWCGHC++LAP W+EL+ V IA++DCT
Sbjct: 8 LALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE 67
Query: 143 RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
R+IC + ++ YPTLL GKK+ + G R L++L +V
Sbjct: 68 RNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLS 109
Score = 75.4 bits (186), Expect = 2e-17
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
+ V I +VDCT E+ +C+ + GYPTL F+ G + + G RDL +L F+
Sbjct: 52 PGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLFRGGKKVS--EHSGGRDLDSLHRFVLS 109
Query: 65 Q 65
Q
Sbjct: 110 Q 110
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 162 bits (411), Expect = 3e-48
Identities = 49/265 (18%), Positives = 99/265 (37%), Gaps = 43/265 (16%)
Query: 80 NEGLVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI 137
+ + ELT +SF+K + N+ V+FYAPWCGHC+ L+ +++ A V+
Sbjct: 16 DPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNC 75
Query: 138 DCTQHRSICQSFDIKSYPTLLWIESGKKLDK-----------------FQGSRTLETLVN 180
D +++++C +D+ +PTL+ K + G+RTL +V+
Sbjct: 76 DLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVD 135
Query: 181 YVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLT-----SENFNDVIKSGTVFIKFFAP 235
+ KK D + VV + S + + F++
Sbjct: 136 FSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQDKISPVYKSIALDWLGKFDFYSI 195
Query: 236 WCGHCKRLA---PTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK 292
K+L PT+E+ ++ ++ + D +
Sbjct: 196 SNKKLKQLTDMNPTYEKTP-EIFKYLQKVIPEQRQS--------------DKSKLVVFDA 240
Query: 293 NGVRTAEYNGSR-DLEELYQFILKH 316
+ + EY G+ + ++ +F+
Sbjct: 241 DKDKFWEYEGNSINKNDISKFLRDT 265
Score = 119 bits (298), Expect = 1e-31
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 22/129 (17%)
Query: 207 KPEPVVSLTSENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIA 264
+ LT ++F+ I + T ++F+APWCGHCK+L+ T+ + +L + +A
Sbjct: 15 SDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRL---DGVVQVA 71
Query: 265 KVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA-----------------EYNGSRDLE 307
V+C +K LC + V+GFP++ V++ Y+G+R L
Sbjct: 72 AVNCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLA 131
Query: 308 ELYQFILKH 316
+ F L
Sbjct: 132 PIVDFSLSR 140
Score = 105 bits (262), Expect = 2e-26
Identities = 34/241 (14%), Positives = 74/241 (30%), Gaps = 50/241 (20%)
Query: 6 EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKG---------------SESEASKFR 50
+V D K LCA ++ G+PTL F+ S +
Sbjct: 66 GVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYS 125
Query: 51 GTRDLPTLTNFINEQISETPKEPSDKPIVNE----------GLVELTEESFEKYVSLGNH 100
G R L + +F +I K+ + L ++ Y S+
Sbjct: 126 GARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQDKISPVYKSIALD 185
Query: 101 F---VKFYAPWCGHCQSLA---PVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSY 154
+ FY+ + L P +++ FK + V +
Sbjct: 186 WLGKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQS------------DKS 233
Query: 155 PTLLWIESGKKLDKFQGSR-TLETLVNYVSK------MKGPLNKKADSPDAENASEVPVK 207
+++ K +++G+ + ++ +GP +++++ + P+K
Sbjct: 234 KLVVFDADKDKFWEYEGNSINKNDISKFLRDTFSITPNEGPFSRRSEYIAYLKTGKKPIK 293
Query: 208 P 208
Sbjct: 294 K 294
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 167 bits (423), Expect = 5e-48
Identities = 56/247 (22%), Positives = 104/247 (42%), Gaps = 21/247 (8%)
Query: 85 ELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
E+ F +YV G + + P++ ELA + ++ ID +
Sbjct: 225 EIDGSVFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAKKNR--GLMNFVSIDARKFGR 282
Query: 145 ICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNY-----------VSKMKGPLNKKA 193
+ ++K L I + K+ + E + + + K
Sbjct: 283 HAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGD 342
Query: 194 DSPDAENASEVPVKPEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELG 251
SP ++ + V L +N ++++ V + ++APWCGHCKRLAPT++EL
Sbjct: 343 ASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELA 402
Query: 252 TKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA--EYNGSRDLEEL 309
+ ++IAK+D T+ ++G+P+I +Y G ++ Y GSR L+ L
Sbjct: 403 DTYANATSDVLIAKLDHTEN----DVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSL 458
Query: 310 YQFILKH 316
+ FI ++
Sbjct: 459 FDFIKEN 465
Score = 132 bits (333), Expect = 3e-35
Identities = 42/231 (18%), Positives = 96/231 (41%), Gaps = 21/231 (9%)
Query: 66 ISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELAS 124
+ + P D +V +L +SF +Y+ + +F+APWCGHC+++AP + + A
Sbjct: 4 MQQEAVAPEDSAVV-----KLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAE 58
Query: 125 HFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD--KFQGSRTLETLVNYV 182
E+++++A+IDCT+++ +C +I +P+L ++ + ++G RT E +V ++
Sbjct: 59 TLV-EKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFM 117
Query: 183 SKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKR 242
K P ++ + +++SG + F A + +
Sbjct: 118 IKQSQPAVAVVA------------DLPAYLANETFVTPVIVQSGKIDADFNATFYSMANK 165
Query: 243 LAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKN 293
++ + + D+ + I E + + +
Sbjct: 166 HFNDYDFVSAENADDDFKLSIYLPSAMDEPVVYNGKKADIADADVFEKWLQ 216
Score = 127 bits (320), Expect = 2e-33
Identities = 43/128 (33%), Positives = 71/128 (55%), Gaps = 7/128 (5%)
Query: 200 NASEVPVKPEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNK 258
V + VV L +++FN+ I+S V +FFAPWCGHCK +AP + + L++
Sbjct: 5 QQEAVAPEDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN 64
Query: 259 HGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA--EYNGSRDLEELYQFILKH 316
I +A++DCT+ +DLC + + GFPS+ ++KN +Y G R E + QF++K
Sbjct: 65 --ITLAQIDCTEN--QDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQ 120
Query: 317 KVESHDEL 324
+ +
Sbjct: 121 SQPAVAVV 128
Score = 120 bits (301), Expect = 1e-30
Identities = 51/236 (21%), Positives = 92/236 (38%), Gaps = 25/236 (10%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSE--------SEASKFRGTRDLP 56
+ +D + + + L +E F D
Sbjct: 265 KNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKI 324
Query: 57 TLT---------NFINEQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH--FVKFY 105
L +F+ S K + + +L ++ ++ V+ V +Y
Sbjct: 325 VLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYY 384
Query: 106 APWCGHCQSLAPVWQELASHFK-TEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGK 164
APWCGHC+ LAP +QELA + DV IAK+D T++ + I+ YPT++ GK
Sbjct: 385 APWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND--VRGVVIEGYPTIVLYPGGK 442
Query: 165 KLD--KFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSEN 218
K + +QGSR+L++L +++ + G + + E + + + L E
Sbjct: 443 KSESVVYQGSRSLDSLFDFIKE-NGHFDVDGKALYEEAQEKAAEEADADAELADEE 497
Score = 105 bits (262), Expect = 2e-25
Identities = 43/320 (13%), Positives = 88/320 (27%), Gaps = 52/320 (16%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
+ +T+ Q+DCT + LC + I G+P+LK FK + + + G R + F+ +Q
Sbjct: 62 EKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQS 121
Query: 67 SETPKEPSDKPIVNEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELAS 124
+D P L E+F V G F A + + +++
Sbjct: 122 QPAVAVVADLPA------YLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSA 175
Query: 125 HFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
++ + E K + ++
Sbjct: 176 ENADDDFKLSIYLPSAMD------------------EPVVYNGKKADIADADVFEKWLQV 217
Query: 185 MKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLA 244
P + F ++SG F +
Sbjct: 218 EALPY---------------------FGEIDGSVFAQYVESGLPLGYLFYNDEEELEEYK 256
Query: 245 PTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR 304
P + EL K + + +D + + ++ + +Y +
Sbjct: 257 PLFTELAKKN---RGLMNFVSIDARKF--GRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQ 311
Query: 305 DLEELYQFILKHKVESHDEL 324
EE + + V +
Sbjct: 312 LSEEAFDELSDKIVLESKAI 331
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 147 bits (373), Expect = 2e-44
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 5/117 (4%)
Query: 203 EVPVKPEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGI 261
+ P + + V+ L NF + + + + ++F+APWCGHCK LAP + + KL I
Sbjct: 1 DAPEEEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEI 60
Query: 262 VIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA--EYNGSRDLEELYQFILKH 316
+AKVD T+E DL Q GV G+P+I ++NG + EY R+ +++ ++ K
Sbjct: 61 RLAKVDATEE--SDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKR 115
Score = 140 bits (354), Expect = 1e-41
Identities = 35/118 (29%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 75 DKPIVNEGLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTE-EDV 132
D P + ++ L + +F + ++ + V+FYAPWCGHC++LAP + + A K E ++
Sbjct: 1 DAPEEEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEI 60
Query: 133 SIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD--KFQGSRTLETLVNYVSKMKGP 188
+AK+D T+ + Q + ++ YPT+ + +G ++ R + +VN++ K GP
Sbjct: 61 RLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGP 118
Score = 78.5 bits (194), Expect = 3e-18
Identities = 17/61 (27%), Positives = 33/61 (54%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
+E S + + +VD T E L + GYPT+KFF+ G + ++ R+ + N++ +
Sbjct: 55 AEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKK 114
Query: 65 Q 65
+
Sbjct: 115 R 115
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 146 bits (371), Expect = 3e-44
Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 84 VELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
+T+E++ + + G+ ++FYAPWC CQ+L P W+ A + + +V+IAK+D T+
Sbjct: 10 RVITDENWRELLE-GDWMIEFYAPWCPACQNLQPEWESFAEWGE-DLEVNIAKVDVTEQP 67
Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENAS 202
+ F I + PT+ + G+ +QG RT + +N++S + + S + +S
Sbjct: 68 GLSGRFIINALPTIYHCKDGEFRR-YQGPRTKKDFINFISDKEWKSIEPVSSWFSGPSS 125
Score = 144 bits (366), Expect = 2e-43
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 207 KPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
V +T EN+ ++++ G I+F+APWC C+ L P WE D + + IAKV
Sbjct: 5 SSGNVRVITDENWRELLE-GDWMIEFYAPWCPACQNLQPEWESFAEWGEDLE--VNIAKV 61
Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
D T++ L + ++ P+IY K+G Y G R ++ FI + +S + +
Sbjct: 62 DVTEQ--PGLSGRFIINALPTIYHCKDGEFR-RYQGPRTKKDFINFISDKEWKSIEPV 116
Score = 76.6 bits (189), Expect = 1e-17
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 6 EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
ED V I +VD T + L I PT+ K G E +++G R NFI+++
Sbjct: 52 EDLEVNIAKVDVTEQPGLSGRFIINALPTIYHCKDG---EFRRYQGPRTKKDFINFISDK 108
Query: 66 ISETPKEPSD 75
++ + S
Sbjct: 109 EWKSIEPVSS 118
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 145 bits (368), Expect = 2e-43
Identities = 42/117 (35%), Positives = 67/117 (57%), Gaps = 5/117 (4%)
Query: 202 SEVPVKPE-PVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKH 259
++ VK E V L NF++ + TV ++F+APWCGHCK+ AP +E++ + L DN
Sbjct: 9 DDLEVKEENGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDP 68
Query: 260 GIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
I +AK+D T L ++ V G+P+I + K G +Y+GSR EE+ + +
Sbjct: 69 PIAVAKIDATSA--SMLASKFDVSGYPTIKILKKGQAV-DYDGSRTQEEIVAKVREV 122
Score = 144 bits (366), Expect = 3e-43
Identities = 40/138 (28%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 67 SETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASH 125
S + + + G+ L + +F+ +V+ + ++FYAPWCGHC+ AP ++++AS
Sbjct: 3 SGSSGDDDLEVKEENGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIAST 62
Query: 126 FKTEE-DVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
K + +++AKID T + FD+ YPT+ ++ G+ +D + GSRT E +V V +
Sbjct: 63 LKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKILKKGQAVD-YDGSRTQEEIVAKVRE 121
Query: 185 MKGPLNKKADSPDAENAS 202
+ P + +S
Sbjct: 122 VSQPDWTPPPEVTSGPSS 139
Score = 74.0 bits (182), Expect = 2e-16
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
D + + ++D T L + +++GYPT+K KKG +A + G+R + + E
Sbjct: 65 DNDPPIAVAKIDATSASMLASKFDVSGYPTIKILKKG---QAVDYDGSRTQEEIVAKVRE 121
Query: 65 QISETPKEPSD 75
P +
Sbjct: 122 VSQPDWTPPPE 132
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 145 bits (367), Expect = 2e-43
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 84 VELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEED--VSIAKIDC 139
+ELT++SF+K V S V+FYAPWCGHC++L P W AS K + V +A +D
Sbjct: 10 IELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDA 69
Query: 140 TQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAE 199
T ++ + + I+ +PT+ + G+ + G RT +V+ + + ++
Sbjct: 70 TVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLESG 129
Query: 200 NAS 202
+S
Sbjct: 130 PSS 132
Score = 144 bits (364), Expect = 5e-43
Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 208 PEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIA 264
V+ LT ++F+ + ++F+APWCGHCK L P W +++ + G + +A
Sbjct: 6 SGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLA 65
Query: 265 KVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVES 320
VD T + L ++ G+ GFP+I +++ G +Y+G R ++ L ++
Sbjct: 66 AVDATVN--QVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDN 119
Score = 76.7 bits (189), Expect = 2e-17
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 2 LNDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNF 61
+ + +V + VD TV + L + I G+PT+K F+KG + G R + +
Sbjct: 54 VKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPV--DYDGGRTRSDIVSR 111
Query: 62 INEQISETPKEPS 74
+ S+ P
Sbjct: 112 ALDLFSDNAPPPE 124
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 143 bits (363), Expect = 6e-43
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 8/125 (6%)
Query: 198 AENASEVPVKPEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKL- 254
A N + +P VV LT E F+ ++ VF+ ++ PW H W++L
Sbjct: 4 ASNVANDGERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQS 63
Query: 255 -LDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA--EYNGSRDLEELYQ 311
N V A++D + D+ + V GFP++ Y + EY+G R L +
Sbjct: 64 QKRNHLTFVAARIDGEKY--PDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDS 121
Query: 312 FILKH 316
F+ ++
Sbjct: 122 FVFQN 126
Score = 136 bits (344), Expect = 3e-40
Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 11/125 (8%)
Query: 67 SETPKEPSDKPIVNEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELAS 124
S + V VELT+E+F+ V + FV +Y PW H + +W +L+
Sbjct: 5 SNVANDGERPSRV----VELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSM 60
Query: 125 HFKTEED---VSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD--KFQGSRTLETLV 179
+ + A+ID ++ + + + +PT+ + K + ++ G R L +
Sbjct: 61 SQSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVD 120
Query: 180 NYVSK 184
++V +
Sbjct: 121 SFVFQ 125
Score = 73.9 bits (182), Expect = 1e-16
Identities = 9/65 (13%), Positives = 27/65 (41%)
Query: 1 MLNDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTN 60
++D + ++G+PT++++ + + E ++ G R L + +
Sbjct: 62 QSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDS 121
Query: 61 FINEQ 65
F+ +
Sbjct: 122 FVFQN 126
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 138 bits (349), Expect = 6e-41
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 195 SPDAENASEVPVKPEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGT 252
S + S + + V+ LT NFN + G ++F+APWCGHC+RL P W++ T
Sbjct: 3 SGSSGAVSGLYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAAT 62
Query: 253 KLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA-EYNGSRDLEELYQ 311
L K + + V+ + + L Q GV GFP+I ++ +Y G R E +
Sbjct: 63 AL---KDVVKVGAVNADKH--QSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVD 117
Query: 312 FILKH 316
L
Sbjct: 118 AALSA 122
Score = 135 bits (343), Expect = 5e-40
Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 80 NEGLVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI 137
++ ++ELT +F + V + V+FYAPWCGHCQ L P W++ A+ K + V + +
Sbjct: 16 SDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALK--DVVKVGAV 73
Query: 138 DCTQHRSICQSFDIKSYPTLLWIESGKKL-DKFQGSRTLETLVNYVSKMK--GP 188
+ +H+S+ + ++ +PT+ + K + +QG RT E +V+ GP
Sbjct: 74 NADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRSGP 127
Score = 71.7 bits (176), Expect = 9e-16
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
V +G V+ + L + G+PT+K F +++ ++G R + + +
Sbjct: 65 KDVVKVGAVNADKHQSLGGQYGVQGFPTIKIFGAN-KNKPEDYQGGRTGEAIVDAALSAL 123
Query: 67 SETP 70
P
Sbjct: 124 RSGP 127
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 145 bits (365), Expect = 1e-39
Identities = 49/250 (19%), Positives = 94/250 (37%), Gaps = 22/250 (8%)
Query: 80 NEGLVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEED-VSIAK 136
++ L L +S V + V+F+A WCGH + AP W+ELA+ K +++A
Sbjct: 11 SDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAV 70
Query: 137 IDCTQ--HRSICQSFDIKSYPTLLWIESG-KKLDKFQGSRTLETLVNYVSKMKGPLNKKA 193
+DC + + ++C+ F+I +PT+ + ++ K + ++ L
Sbjct: 71 LDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHR 130
Query: 194 DSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTK 253
D+ P K + + N D + + + + G L +
Sbjct: 131 DTWPPACPPLEPAKLNDIDGFFTRNKADYLA---LVFEREDSYLGREVTLDLSQ------ 181
Query: 254 LLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
H + + +V T+ DL N+ GV FPS Y+ + + Y
Sbjct: 182 ----YHAVAVRRVLNTE---SDLVNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSFYTSY 234
Query: 314 LKHKVESHDE 323
L+ +
Sbjct: 235 LRGLPGLTRD 244
Score = 87.7 bits (216), Expect = 2e-19
Identities = 27/233 (11%), Positives = 74/233 (31%), Gaps = 17/233 (7%)
Query: 5 SEDSRVTIGQVDCTVE--KQLCADQEITGYPTLKFFKKGSES--EASKFRGTRDLPTLTN 60
+ + +DC E +C + I G+PT++FF+ +++ A+ ++ TL
Sbjct: 61 DWRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRM 120
Query: 61 FINEQISETPKE--PSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPV 118
+ + + P+ P+ L ++ + + G
Sbjct: 121 RLIDALESHRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFEREDSYLGR------- 173
Query: 119 WQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIES-GKKLDKFQGSRTLET 177
E+ V++ ++ + F + +P+ + G +
Sbjct: 174 --EVTLDLSQYHAVAVRRVLN-TESDLVNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSF 230
Query: 178 LVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFI 230
+Y+ + G + ++ + S+ + ++S +I
Sbjct: 231 YTSYLRGLPGLTRDAPPTTATPVTADKIAPTVWKFADRSKIYMADLESALHYI 283
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 134 bits (339), Expect = 2e-39
Identities = 33/128 (25%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 80 NEGLV-ELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAK 136
+ G V + ++F+ V + ++FYAPWCGHC+ L P++ L +K ++D+ IAK
Sbjct: 5 SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAK 64
Query: 137 IDCTQHRSICQSFDIKSYPTLLWIESGKK---LDKFQGSRTLETLVNYVSKMKGPLNKKA 193
+D T + + ++ +PT+ + SG K + G+R LE L ++ + ++
Sbjct: 65 MDATANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSRTK 124
Query: 194 DSPDAENA 201
+ ++
Sbjct: 125 EELSGPSS 132
Score = 133 bits (337), Expect = 4e-39
Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 11/124 (8%)
Query: 209 EPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
PV + + F+ ++ V I+F+APWCGHCK+L P + LG K K +VIAK+
Sbjct: 7 GPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKD-LVIAKM 65
Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA---EYNGSRDLEELYQFILKH---KVES 320
D T +Q V+GFP+IY +G + G+RDLE L +FI +H + +
Sbjct: 66 DATAN--DITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSRT 123
Query: 321 HDEL 324
+EL
Sbjct: 124 KEEL 127
Score = 69.7 bits (171), Expect = 6e-15
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKF-RGTRDLPTLTNFIN 63
+ I ++D T ++ G+PT+ F G + KF G RDL L+ FI+
Sbjct: 55 KGQKDLVIAKMDATANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFID 114
Query: 64 EQISETPKEPSDKPIVNEG 82
E ++ + + + G
Sbjct: 115 EHATKRSRTKEELSGPSSG 133
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 137 bits (347), Expect = 6e-38
Identities = 47/249 (18%), Positives = 85/249 (34%), Gaps = 42/249 (16%)
Query: 79 VNEGLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTE----EDVS 133
+ + L E+ ++ ++ + V FYA WC Q L P+++E + K E V
Sbjct: 3 LGSEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVV 62
Query: 134 IAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDK-FQGSRTLETLVNYVSKMKGPLNKK 192
A++DC QH I Q + I YPTL +G + + ++G R+++ L +Y+ + K
Sbjct: 63 FARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSD---- 118
Query: 193 ADSPDAENASEVPVKPEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELG 251
P+ + + I +F +E +
Sbjct: 119 -----------------PIQEIRDLAEITTLDRSKRNIIGYFE---QKDSDNYRVFERVA 158
Query: 252 TKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAE--YNGSRDLEEL 309
L D+ + D+ E G IY + +
Sbjct: 159 NILHDDCAFLSA---------FGDVSKPERYSGDNIIYKPPGHSAPDMVYLGAMTNFDVT 209
Query: 310 YQFILKHKV 318
Y +I V
Sbjct: 210 YNWIQDKCV 218
Score = 123 bits (310), Expect = 1e-32
Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
Query: 208 PEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLD---NKHGIVI 263
+ SL +EN ++++ + + F+A WC + L P +EE + + N++ +V
Sbjct: 4 GSEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVF 63
Query: 264 AKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA-EYNGSRDLEELYQFILKHKVESHD 322
A+VDC Q D+ + + +P++ +++NG+ EY G R ++ L +I + K +
Sbjct: 64 ARVDCDQH--SDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQ 121
Query: 323 EL 324
E+
Sbjct: 122 EI 123
Score = 96.6 bits (240), Expect = 8e-23
Identities = 52/313 (16%), Positives = 100/313 (31%), Gaps = 46/313 (14%)
Query: 4 DSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFIN 63
+++V +VDC + I+ YPTLK F+ G ++RG R + L ++I
Sbjct: 55 FPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNG-MMMKREYRGQRSVKALADYIR 113
Query: 64 EQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELA 123
+Q S+ +E D + + ++ V++ +A
Sbjct: 114 QQKSDPIQEIRD------------LAEITTLDRSKRNIIGYFE---QKDSDNYRVFERVA 158
Query: 124 SHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS 183
+ + A D ++ I P S + + N++
Sbjct: 159 NILHDDCAFLSAFGDVSKPERYSGDNIIYKPPG----HSAPDMVYLGAMTNFDVTYNWIQ 214
Query: 184 KMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKR 242
PL V +T EN ++ + G I F +
Sbjct: 215 DKCVPL---------------------VREITFENGEELTEEGLPFLILFHMK--EDTES 251
Query: 243 LAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYV--YKNGVRTAEY 300
L E+ +L+ K I DC + L Q+ P I + +++ ++
Sbjct: 252 LEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDF 311
Query: 301 NGSRDLEELYQFI 313
+L QF+
Sbjct: 312 KDVLIPGKLKQFV 324
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 139 bits (350), Expect = 1e-37
Identities = 64/326 (19%), Positives = 118/326 (36%), Gaps = 37/326 (11%)
Query: 6 EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
++ R V+ V + + I + K + + + FI E
Sbjct: 156 DNYRFAHTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQEN 215
Query: 66 ISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVW----QE 121
I +TE++ + + + +Y + W
Sbjct: 216 I-------------FGICPHMTEDNKDLIQG-KDLLIAYYDVDYEKNAKGSNYWRNRVMM 261
Query: 122 LASHFKTEEDVS-IAKIDCTQHRSICQSFDIKS----YPTLLWIESGKKLD--KFQGSRT 174
+A F A F ++S P + + + + + SR
Sbjct: 262 VAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRD 321
Query: 175 LETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVI--KSGTVFIKF 232
+ L ++ K ++ PV + +ENF++++ ++ V I+F
Sbjct: 322 GKALERFLQDYFDGNLK----RYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEF 377
Query: 233 FAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK 292
+APWCGHCK L P ++ELG KL + IVIAK+D T D+ + V GFP+IY
Sbjct: 378 YAPWCGHCKNLEPKYKELGEKLSKDP-NIVIAKMDATA---NDVPSPYEVRGFPTIYFSP 433
Query: 293 NGVRTA--EYNGSRDLEELYQFILKH 316
+ +Y G R+L + ++ +
Sbjct: 434 ANKKLNPKKYEGGRELSDFISYLQRE 459
Score = 136 bits (343), Expect = 1e-36
Identities = 55/244 (22%), Positives = 98/244 (40%), Gaps = 37/244 (15%)
Query: 84 VELTEESFEKYVSLGNH----FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC 139
+ELT+++FE +S V+F+APWCGH + LAP ++ A+ K V +AK+DC
Sbjct: 4 LELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLK--GIVPLAKVDC 61
Query: 140 TQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAE 199
T + + C + + YPTL G++ + G RT + +V+++ K GP
Sbjct: 62 TANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGP----------- 110
Query: 200 NASEVPVKPEPVVSLTSENFND--VIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDN 257
V L +E + + FF + + + L
Sbjct: 111 ----------ASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAH---SEFLKAASNL--- 154
Query: 258 KHGIVIAKVDCTQELSKDLCNQEGVDG-FPSIYVYKNGVRTAEY-NGSRDLEELYQFILK 315
+ A + +++ N EG+ PS K +T Y ++ +FI +
Sbjct: 155 RDNYRFAHTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQE 214
Query: 316 HKVE 319
+
Sbjct: 215 NIFG 218
Score = 124 bits (312), Expect = 3e-32
Identities = 39/187 (20%), Positives = 81/187 (43%), Gaps = 9/187 (4%)
Query: 21 KQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPS----DK 76
+ P + E + +RD L F+ + K
Sbjct: 288 SDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIP 347
Query: 77 PIVNEGLVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSI 134
+ + + E+F++ V+ N ++FYAPWCGHC++L P ++EL + ++ I
Sbjct: 348 ESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVI 407
Query: 135 AKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD--KFQGSRTLETLVNYVSKMKGPLNKK 192
AK+D T + + ++++ +PT+ + + KKL+ K++G R L ++Y+ +
Sbjct: 408 AKMDATAN-DVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREATNPPVI 466
Query: 193 ADSPDAE 199
+ +
Sbjct: 467 QEEKPKK 473
Score = 121 bits (303), Expect = 3e-31
Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Query: 210 PVVSLTSENFNDVIK----SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAK 265
V+ LT +NF I +G + ++FFAPWCGH KRLAP +E T+L K + +AK
Sbjct: 2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRL---KGIVPLAK 58
Query: 266 VDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
VDCT + CN+ GV G+P++ ++++G Y+G R + + + K + L
Sbjct: 59 VDCTAN--TNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGPASVPL 115
Score = 90.3 bits (223), Expect = 3e-20
Identities = 54/324 (16%), Positives = 106/324 (32%), Gaps = 46/324 (14%)
Query: 8 SRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQIS 67
V + +VDCT C ++GYPTLK F+ G E+ + G R + + + +Q
Sbjct: 52 GIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGEEAG--AYDGPRTADGIVSHLKKQAG 109
Query: 68 ETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHF 126
P+ P+ TEE F+K++S + V F+ + + AS+
Sbjct: 110 -----PASVPL-------RTEEEFKKFISDKDASIVGFFDDSFSEA---HSEFLKAASNL 154
Query: 127 KTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK 186
+ + ++ + +D +L+ S L N
Sbjct: 155 RDNYRFAHTNVES-----LVNEYDDNGEGIILFRPSH--------------LTNKFEDKT 195
Query: 187 GPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPT 246
++ + +T +N D+I+ + I ++ + +
Sbjct: 196 VAYTEQKMTSGKIKKFIQENIFGICPHMTEDNK-DLIQGKDLLIAYYDVDYEKNAKGSNY 254
Query: 247 W----EELGTKLLDNKHGIVIAKVDCT--QELSKDLCNQEGVDGFPSIYV--YKNGVRTA 298
W + K LD H + A D + P + + K
Sbjct: 255 WRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVM 314
Query: 299 EYNGSRDLEELYQFILKHKVESHD 322
+ SRD + L +F+ + +
Sbjct: 315 QEEFSRDGKALERFLQDYFDGNLK 338
Score = 69.1 bits (168), Expect = 3e-13
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
S+D + I ++D T + + E+ G+PT+ F + K+ G R+L +++
Sbjct: 400 SKDPNIVIAKMDAT-ANDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQR 458
Query: 65 QISETPKEPSDKPIVNEGLVE 85
+ + P +KP + E
Sbjct: 459 EATNPPVIQEEKPKKKKKAQE 479
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 136 bits (343), Expect = 1e-37
Identities = 31/259 (11%), Positives = 76/259 (29%), Gaps = 44/259 (16%)
Query: 68 ETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFK 127
P + +V LTE++F++ + + +Y + +Q +
Sbjct: 3 NFPTYDGK-----DRVVSLTEKNFKQVLKKYDVLCLYYHESVSSDKVAQKQFQLKEIVLE 57
Query: 128 ------TEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNY 181
+D+ +D + + + +L ++ + ++ F G + LV +
Sbjct: 58 LVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDEEGSLYVLKGDRTIE-FDGEFAADVLVEF 116
Query: 182 VSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCK 241
+ + + +S + F I+ I FF
Sbjct: 117 LLDLIEDPVEIINSKL-----------------EVQAFER-IEDQIKLIGFFK---SEES 155
Query: 242 RLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGV--RTAE 299
+EE + K + + + + Y+ + A
Sbjct: 156 EYYKAFEEAAEHFQP--------YIKFFATFDKGVAKKLSLK-MNEVDFYEPFMDEPIAI 206
Query: 300 YNGSRDLEELYQFILKHKV 318
+ EEL +F+ +H+
Sbjct: 207 PDKPYTEEELVEFVKEHQR 225
Score = 96.3 bits (239), Expect = 7e-23
Identities = 46/321 (14%), Positives = 84/321 (26%), Gaps = 56/321 (17%)
Query: 6 EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
E + VD E +L +L K E F G L F+ +
Sbjct: 64 EHKDIGFVMVDAKKEAKLAKKLGFDEEGSLYVLKGDRTIE---FDGEFAADVLVEFLLDL 120
Query: 66 ISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASH 125
I E + I ++ V+ E ++ + F+ ++E A H
Sbjct: 121 I-----EDPVEIINSKLEVQAFERIEDQIK-----LIGFFK---SEESEYYKAFEEAAEH 167
Query: 126 FKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG-KKLDKFQGSRTLETLVNYVSK 184
F+ K T + + + +K + + + T E LV +V +
Sbjct: 168 FQPY-----IKFFATFDKGVAKKLSLKMNEVDFYEPFMDEPIAIPDKPYTEEELVEFVKE 222
Query: 185 MKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSG---TVFIKFFAPWCGHCK 241
+ P + L E+ + + + F
Sbjct: 223 HQRPT---------------------LRRLRPEDMFETWEDDLNGIHIVAFAERSDPDGY 261
Query: 242 RLAPTWEELGTKLLDNKHGIVIAKVDCT------QELSKDLCNQEGVDGFPSIYVYKNGV 295
+++ D + I +D K + V
Sbjct: 262 EFLEILKQVARDNTD-NPDLSIVWIDPDDFPLLVAYWEKTFKIDLFKPQIGVVNVTDADS 320
Query: 296 RTAEYNGSRDL---EELYQFI 313
E DL EEL +I
Sbjct: 321 VWMEIPDDDDLPTAEELEDWI 341
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 126 bits (318), Expect = 2e-36
Identities = 44/114 (38%), Positives = 68/114 (59%), Gaps = 11/114 (9%)
Query: 209 EPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG--IVIA 264
PV + ++N+N+++ + V I+F+APWCGHCK LAP +EELG ++ +VIA
Sbjct: 7 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIA 66
Query: 265 KVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA--EYNGSRDLEELYQFILKH 316
KVD T D + GFP+I +Y G + Y+GSR +E+L +FI ++
Sbjct: 67 KVDATANDVPD-----EIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAEN 115
Score = 119 bits (301), Expect = 6e-34
Identities = 37/120 (30%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 77 PIVNEGLV-ELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEE--- 130
P+ +EG V + +++ + V + ++FYAPWCGHC++LAP ++EL + + E
Sbjct: 2 PLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKD 61
Query: 131 DVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD--KFQGSRTLETLVNYVSKMKGP 188
V IAK+D T + +I+ +PT+ +G K + GSRT+E L+ ++++
Sbjct: 62 RVVIAKVDATANDV---PDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKY 118
Score = 65.5 bits (160), Expect = 1e-13
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 3 NDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFI 62
RV I +VD T EI G+PT+K + G++ + + G+R + L FI
Sbjct: 56 KSEFKDRVVIAKVDATANDVP---DEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFI 112
Query: 63 NEQIS 67
E
Sbjct: 113 AENGK 117
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 125 bits (315), Expect = 1e-34
Identities = 35/246 (14%), Positives = 77/246 (31%), Gaps = 36/246 (14%)
Query: 83 LVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELAS---HFKTEEDVSIAKIDC 139
L EL ++ F++ VS+ + A C CQ+ + +E ++ + +
Sbjct: 11 LKELAQKEFKEPVSI---KLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSP 67
Query: 140 TQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAE 199
H+ + + + PT++ ++ G ++ +
Sbjct: 68 FTHKEETEKYGVDRVPTIVIEGDKDYGIRYIGLPAGLEFTTLINGIFHV----------- 116
Query: 200 NASEVPVKPEPVVSLTSENFNDV--IKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDN 257
+ L+ + + + F CG+C A +
Sbjct: 117 --------SQRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALA---- 164
Query: 258 KHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317
I +D ++ +DL Q V G P I + K E+ G++ +I+
Sbjct: 165 NDYITSKVIDASEN--QDLAEQFQVVGVPKIVINKGVA---EFVGAQPENAFLGYIMAVY 219
Query: 318 VESHDE 323
+ E
Sbjct: 220 EKLKRE 225
Score = 111 bits (279), Expect = 2e-29
Identities = 26/196 (13%), Positives = 67/196 (34%), Gaps = 18/196 (9%)
Query: 1 MLNDSEDS-RVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLT 59
++ ++ ++ + K+ + PT+ ++ G T
Sbjct: 50 VIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVIEGDKDYGI--RYIGLPAGLEFT 107
Query: 60 NFINEQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVW 119
IN + ++P E L + F CG+C S A +
Sbjct: 108 TLINGIFHVSQRKPQLSEKTLELLQVVDIPI---------EIWVFVTTSCGYCPSAAVMA 158
Query: 120 QELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLV 179
+ A + ++ ID ++++ + + F + P ++ K + +F G++ +
Sbjct: 159 WDFALAN---DYITSKVIDASENQDLAEQFQVVGVPKIVI---NKGVAEFVGAQPENAFL 212
Query: 180 NYVSKMKGPLNKKADS 195
Y+ + L ++ +
Sbjct: 213 GYIMAVYEKLKREKEQ 228
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 120 bits (302), Expect = 4e-34
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 8/118 (6%)
Query: 81 EGLVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID 138
+ ++LT ++F + V G V FYAPWCG CQ+ AP ++ LA K V K+D
Sbjct: 3 QASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIK--GKVRAGKVD 60
Query: 139 CTQHRSICQSFDIKSYPTLLWIESGKKLDK----FQGSRTLETLVNYVSKMKGPLNKK 192
C + CQ IK+YP++ + + SR +T+ + L +
Sbjct: 61 CQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQ 118
Score = 118 bits (297), Expect = 3e-33
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 208 PEPVVSLTSENFN-DVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAK 265
P+ + LT + FN V++ T + F+APWCG C+ AP +E L + K + K
Sbjct: 2 PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMI---KGKVRAGK 58
Query: 266 VDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA----EYNGSRDLEELYQFILKH 316
VDC C + G+ +PS+ +Y+ E SRD + + I
Sbjct: 59 VDCQAY--PQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGK 111
Score = 64.3 bits (157), Expect = 4e-13
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKG--SESEASKFRGTRDLPTLTNFINE 64
+V G+VDC Q C I YP++K ++ +S + +RD T+ I
Sbjct: 51 KGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYG 110
Query: 65 QISETPKE 72
++ +
Sbjct: 111 KLETLQSQ 118
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 115 bits (290), Expect = 7e-30
Identities = 23/264 (8%), Positives = 77/264 (29%), Gaps = 46/264 (17%)
Query: 64 EQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH-FVKFYAPWCGHC------QSLA 116
E+ + P+ ++ + ++++ + ++ P +
Sbjct: 1 EEGLDFPEYDGVDRVI-----NVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEE 55
Query: 117 PVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLE 176
+ ELA+ ++ V +D + ++ + + ++ + + ++ + G + +
Sbjct: 56 LIL-ELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEVIE-YDGEFSAD 113
Query: 177 TLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPW 236
TLV ++ + E + + I+ I +F
Sbjct: 114 TLVEFLLDVLED------------------PVELIEGERELQAFENIEDEIKLIGYFK-- 153
Query: 237 CGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGV- 295
++E + + + + + I Y+ +
Sbjct: 154 -NKDSEHYKAFKEAAEEFHPY--------IPFFATFDSKVAKKLTLK-LNEIDFYEAFME 203
Query: 296 -RTAEYNGSRDLEELYQFILKHKV 318
+ EE+ F+ +H+
Sbjct: 204 EPVTIPDKPNSEEEIVNFVEEHRR 227
Score = 111 bits (279), Expect = 3e-28
Identities = 25/135 (18%), Positives = 51/135 (37%), Gaps = 14/135 (10%)
Query: 199 ENASEVPVK--PEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKR------LAPTWEE 249
E + P + V+++ ++N+ +V K + + + P E
Sbjct: 1 EEGLDFPEYDGVDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILEL 60
Query: 250 LGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEEL 309
L D G+ VD ++ + + G+ SIYV+K EY+G + L
Sbjct: 61 AAQVLEDK--GVGFGLVDSEKD--AAVAKKLGLTEEDSIYVFKEDEVI-EYDGEFSADTL 115
Query: 310 YQFILKHKVESHDEL 324
+F+L + + +
Sbjct: 116 VEFLLDVLEDPVELI 130
Score = 84.3 bits (208), Expect = 1e-18
Identities = 31/272 (11%), Positives = 77/272 (28%), Gaps = 53/272 (19%)
Query: 6 EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
ED V G VD + + +T ++ FK+ E ++ G TL F+ +
Sbjct: 66 EDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKED---EVIEYDGEFSADTLVEFLLDV 122
Query: 66 ISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELA 123
+ + + E + + ++ + + ++ ++E A
Sbjct: 123 LEDPVELIEG------------ERELQAFENIEDEIKLIGYFK---NKDSEHYKAFKEAA 167
Query: 124 SHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG--KKLDKFQGSRTLETLVNY 181
F + T + + +K + + E+ + + + E +VN+
Sbjct: 168 EEFH--PYIPFFA---TFDSKVAKKLTLK-LNEIDFYEAFMEEPVTIPDKPNSEEEIVNF 221
Query: 182 VSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSG---TVFIKFFAPWCG 238
V + + + L E+ + + + F
Sbjct: 222 VEEHRRST---------------------LRKLKPESMYETWEDDMDGIHIVAFAEEADP 260
Query: 239 HCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
+ + D + I +D
Sbjct: 261 DGYEFLEILKSVAQDNTD-NPDLSIIWIDPDD 291
Score = 49.6 bits (118), Expect = 5e-07
Identities = 18/121 (14%), Positives = 34/121 (28%), Gaps = 16/121 (13%)
Query: 32 YPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELTEESF 91
+ F++ E + + NF+ E + + +L ES
Sbjct: 192 LNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHR---------RSTL----RKLKPESM 238
Query: 92 EKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQS 148
+ G H V F + + +A D+SI ID +
Sbjct: 239 YETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPY 298
Query: 149 F 149
+
Sbjct: 299 W 299
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 111 bits (278), Expect = 3e-29
Identities = 19/114 (16%), Positives = 48/114 (42%), Gaps = 11/114 (9%)
Query: 211 VVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
+ L + F VI V +KF + K+ ++ L + +++A+V +
Sbjct: 7 ALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDD-LLVAEVGIS 63
Query: 270 Q---ELSKDLCNQEGVD--GFPSIYVYKNGVRTA--EYNGSRDLEELYQFILKH 316
+L+ +L + +D +P Y++++G Y G+ + + +++
Sbjct: 64 DYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQ 117
Score = 108 bits (271), Expect = 4e-28
Identities = 23/172 (13%), Positives = 53/172 (30%), Gaps = 22/172 (12%)
Query: 82 GLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
G + L +F K + VKF + + ++ LA + + +D+ +A++ +
Sbjct: 6 GALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGIS 63
Query: 141 -----QHRSICQSF--DIKSYPTLLWIESGKKLD--KFQGSRTLETLVNYVSKMKGPLNK 191
+ + + + D +SYP G + + G+ + + ++ L
Sbjct: 64 DYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQGVYLGM 123
Query: 192 KADSP----------DAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFF 233
P A + S K ++K
Sbjct: 124 PGCLPVYDALAGEFIRASGVEARQALLKQGQDNLSSVKETQKKWAEQYLKIM 175
Score = 57.3 bits (138), Expect = 8e-10
Identities = 12/139 (8%), Positives = 36/139 (25%), Gaps = 7/139 (5%)
Query: 5 SEDSRVTIGQVDCT-----VEKQLCADQEI--TGYPTLKFFKKGSESEASKFRGTRDLPT 57
+ + + +V + + +L ++ YP F+ G + G +
Sbjct: 50 ASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGA 109
Query: 58 LTNFINEQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAP 117
+ ++ Q + E +L + + A
Sbjct: 110 IQRWLKGQGVYLGMPGCLPVYDALAGEFIRASGVEARQALLKQGQDNLSSVKETQKKWAE 169
Query: 118 VWQELASHFKTEEDVSIAK 136
+ ++ + + A
Sbjct: 170 QYLKIMGKILDQGEDFPAS 188
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 113 bits (282), Expect = 3e-28
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 12/122 (9%)
Query: 209 EPVVSLTSENFNDVIKSG---TVFIKFFAPWCGHCKRLAPTWEELGTKL-----LDNKHG 260
VV L+ ++F+ V + + F+ CG C+R A T+ + L D
Sbjct: 23 SSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQI 82
Query: 261 IVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNG--VRTAEYNGSRDLEELYQFILKHKV 318
A V+C E DLC + ++ P ++ + R+ E G+ LE + +V
Sbjct: 83 ATAAAVNCASE--VDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEV 140
Query: 319 ES 320
+
Sbjct: 141 DE 142
Score = 110 bits (275), Expect = 2e-27
Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 13/132 (9%)
Query: 66 ISETPKEPSDKPIVNEG--LVELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQ 120
+++ + + +V+L+ + F + + V FY CG C+ A +
Sbjct: 6 VAQVATGSPRPGLFHLDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFS 65
Query: 121 ELASHFKTEED------VSIAKIDCTQHRSICQSFDIKSYPTLLWIESGK--KLDKFQGS 172
+ A K E + A ++C +C+ +DI P L + + ++ G+
Sbjct: 66 KFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGT 125
Query: 173 RTLETLVNYVSK 184
+LE + S
Sbjct: 126 SSLEHVAFENSH 137
Score = 61.6 bits (148), Expect = 1e-10
Identities = 23/190 (12%), Positives = 52/190 (27%), Gaps = 21/190 (11%)
Query: 3 NDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFI 62
T V+C E LC +I P L FF +++ GT L +
Sbjct: 76 GKDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFEN 135
Query: 63 NEQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQEL 122
+ + + + + +V+ + + + K Y + E
Sbjct: 136 SHLEVDELESEVRRLVNKHMVVDDSLKERCI-----DMHFKLYTSKEELVKRSVSSTDES 190
Query: 123 ASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV 182
+ + + ++ + + + + L L ++V
Sbjct: 191 GRFV--------------ETTELYATDIAGAFFSAMHYDVSLV--GTEPRERLTALEDFV 234
Query: 183 SKMKGPLNKK 192
+K L
Sbjct: 235 LLVKDSLPSI 244
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 94.1 bits (234), Expect = 6e-24
Identities = 19/136 (13%), Positives = 44/136 (32%), Gaps = 7/136 (5%)
Query: 67 SETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELA 123
++TP + ++ G + + + ++ + + EL
Sbjct: 3 NDTPFSALWQRLLTRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELL 62
Query: 124 SHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS 183
F + D +A D Q +I F+++ +P L GK G L+ +
Sbjct: 63 REFP-QFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMR 121
Query: 184 KMKGPLNKKADSPDAE 199
+ ++ A +
Sbjct: 122 SI---VDTPAAQETVQ 134
Score = 79.9 bits (197), Expect = 1e-18
Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 4/108 (3%)
Query: 209 EPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC 268
+PV + T +++ + G + + EL + +A D
Sbjct: 20 QPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFD--WQVAVADL 77
Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
Q + + ++ V FP+ V+ +G +G EL +
Sbjct: 78 EQS--EAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSI 123
Score = 40.9 bits (96), Expect = 8e-05
Identities = 6/71 (8%), Positives = 16/71 (22%), Gaps = 2/71 (2%)
Query: 6 EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
+ D + + + +P F G G L +
Sbjct: 66 PQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDG--KLRGALSGIHPWAELLTLMRSI 123
Query: 66 ISETPKEPSDK 76
+ + + +
Sbjct: 124 VDTPAAQETVQ 134
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 92.1 bits (228), Expect = 3e-22
Identities = 21/184 (11%), Positives = 61/184 (33%), Gaps = 16/184 (8%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
++ I D K+L I P + G + ++ G F+ +
Sbjct: 52 TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGV-RYFGLPAGHEFAAFLED 110
Query: 65 QISETPKEPSDKPIVNEGLVELTEESFEKYVSLGN--HFVKFYAPWCGHCQSLAPVWQEL 122
+ + +E L +E+ + ++ + F P C +C + +
Sbjct: 111 IVDVSREET-----------NLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKF 159
Query: 123 ASHFKTE--EDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVN 180
A + ++ ++ +++ + P ++ +G+ +F+G+ + +
Sbjct: 160 AIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLE 219
Query: 181 YVSK 184
+
Sbjct: 220 KLLS 223
Score = 87.1 bits (215), Expect = 2e-20
Identities = 32/220 (14%), Positives = 67/220 (30%), Gaps = 23/220 (10%)
Query: 100 HFVKFYAP-WCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL 158
+ F C +C L + QEL+ + I D + + + + + I P
Sbjct: 25 KLIVFVRKDHCQYCDQLKQLVQELSE-LTDKLSYEIVDFDTPEGKELAKRYRIDRAPATT 83
Query: 159 WIESGKKLD-KFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSE 217
+ GK ++ G ++ + + E + ++
Sbjct: 84 ITQDGKDFGVRYFGLPAGHEFAAFLEDIV-----------------DVSREETNLMDETK 126
Query: 218 NFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQELSKDL 276
I + F P C +C + + G I+ V+ + +
Sbjct: 127 QAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEY--PEW 184
Query: 277 CNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+Q V P I + NG E+ G+ + + +L
Sbjct: 185 ADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSA 224
Score = 35.8 bits (82), Expect = 0.012
Identities = 6/64 (9%), Positives = 17/64 (26%), Gaps = 2/64 (3%)
Query: 4 DSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFIN 63
+ ++ V+ + + P + G + +F G +
Sbjct: 165 KAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRV--EFEGAYPEKMFLEKLL 222
Query: 64 EQIS 67
+S
Sbjct: 223 SALS 226
Score = 34.3 bits (78), Expect = 0.037
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 236 WCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGV 295
C +C +L +EL L +K I D + K+L + +D P+ + ++G
Sbjct: 34 HCQYCDQLKQLVQELSE--LTDKLSYEIVDFDTPEG--KELAKRYRIDRAPATTITQDGK 89
Query: 296 RTA-EYNGSRDLEELYQFILKHKVES 320
Y G E F+ S
Sbjct: 90 DFGVRYFGLPAGHEFAAFLEDIVDVS 115
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 84.9 bits (210), Expect = 8e-20
Identities = 35/106 (33%), Positives = 61/106 (57%), Gaps = 8/106 (7%)
Query: 213 SLTSENFNDVIKSGTV-FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIV-IAKVDCTQ 270
+L F+ + SG + F+ F++P C HC LAPTW E ++ G++ I V+C
Sbjct: 101 TLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEV----DGLLRIGAVNCGD 156
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ LC +GV+ +PS++++++G+ +YNG R E L F ++H
Sbjct: 157 DRM--LCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQH 200
Score = 84.9 bits (210), Expect = 1e-19
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 86 LTEESFEKYVSLGN-HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
L F+ V+ G FV FY+P C HC LAP W+E A + I ++C R
Sbjct: 102 LERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL--LRIGAVNCGDDRM 159
Query: 145 ICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
+C+ + SYP+L SG K+ G R+ E+LV + +
Sbjct: 160 LCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQ 199
Score = 43.7 bits (103), Expect = 3e-05
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 10 VTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
+ IG V+C ++ LC + + YP+L F+ G + K+ G R +L F + +
Sbjct: 147 LRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAV--KYNGDRSKESLVAFAMQHV 201
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 81.2 bits (201), Expect = 2e-19
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 4/106 (3%)
Query: 83 LVELTEESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
+ ++T E+ + L + V F+ C HC+++ V + + V+I+ +D
Sbjct: 4 IRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARA---PQVAISSVDSEA 60
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKG 187
+ + + PTL++I GK F G L + +
Sbjct: 61 RPELMKELGFERVPTLVFIRDGKVAKVFSGIMNPRELQALYASIHH 106
Score = 76.2 bits (188), Expect = 1e-17
Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 7/112 (6%)
Query: 211 VVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
+ +T+E + + F C HCK + ++ G + + I+ VD
Sbjct: 4 IRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARA----PQVAISSVDSE 59
Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESH 321
+L + G + P++ ++G ++G + EL H
Sbjct: 60 AR--PELMKELGFERVPTLVFIRDGKVAKVFSGIMNPRELQALYASIHHHHH 109
Score = 30.0 bits (68), Expect = 0.30
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
+ +V I VD +L + PTL F + G A F G + L
Sbjct: 46 ARAPQVAISSVDSEARPELMKELGFERVPTLVFIRDG--KVAKVFSGIMNPRELQALYAS 103
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 78.5 bits (194), Expect = 2e-18
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 4/101 (3%)
Query: 87 TEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSI 145
T E Y+ + CG C + + ++ V +I + I
Sbjct: 7 TIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN---YVEKIEILLQDMQEI 63
Query: 146 CQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK 186
+ + + PT+L +GK++ + +LE L + +
Sbjct: 64 AGRYAVFTGPTVLLFYNGKEILRESRFISLENLERTIQLFE 104
Score = 73.5 bits (181), Expect = 1e-16
Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 7/104 (6%)
Query: 215 TSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS 273
T E I+ V + CG C + + + ++
Sbjct: 7 TIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNY----VEKIEILLQDM-- 60
Query: 274 KDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317
+++ + V P++ ++ NG + LE L + I +
Sbjct: 61 QEIAGRYAVFTGPTVLLFYNGKEILRESRFISLENLERTIQLFE 104
Score = 33.4 bits (77), Expect = 0.020
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
+ V ++ +++ + PT+ F G E + L L I +
Sbjct: 45 ENYNYVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGKEIL--RESRFISLENLERTI-Q 101
Query: 65 QISE 68
E
Sbjct: 102 LFEE 105
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 79.1 bits (195), Expect = 3e-18
Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 6/110 (5%)
Query: 83 LVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFK-----TEEDVSIAKI 137
L+ +T E F + + G+ + Y+ C HC P + + I +
Sbjct: 18 LIYITPEEFRQLLQ-GDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGER 76
Query: 138 DCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKG 187
+ + R ++ PTL++ + G+ +DK G+ V ++ G
Sbjct: 77 ELSAARLEMNKAGVEGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIYG 126
Score = 74.4 bits (183), Expect = 1e-16
Identities = 19/110 (17%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Query: 211 VVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEEL----GTKLLDNKHGIVIAKV 266
++ +T E F +++ + ++ C HC R P + ++ G +I +
Sbjct: 18 LIYITPEEFRQLLQGD-AILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGER 76
Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ + ++ N+ GV+G P++ YK G + G+ + +
Sbjct: 77 ELSA--ARLEMNKAGVEGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREI 124
Score = 27.4 bits (61), Expect = 3.1
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 8 SRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
IG+ + + + + G PTL F+K+G K G E
Sbjct: 69 WGSLIGERELSAARLEMNKAGVEGTPTLVFYKEG--RIVDKLVGATPWSLKVEKAREIY 125
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 77.7 bits (192), Expect = 3e-18
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 211 VVSLTSENFNDVIKSGT---VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVD 267
V + + F ++K+ V + F WCG K +AP +E+L + LD ++ K+D
Sbjct: 7 VTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD----VIFLKLD 62
Query: 268 CTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317
C QE K L + G+ P+ + K E G+ ++L + I +
Sbjct: 63 CNQEN-KTLAKELGIRVVPTFKILKENSVVGEVTGA-KYDKLLEAIQAAR 110
Score = 72.7 bits (179), Expect = 3e-16
Identities = 21/107 (19%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 84 VELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
E+ +++F V + + WCG +++AP +++LA + DV K+DC
Sbjct: 8 TEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEY---LDVIFLKLDCN 64
Query: 141 Q-HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK 186
Q ++++ + I+ PT ++ + + G++ + L+ + +
Sbjct: 65 QENKTLAKELGIRVVPTFKILKENSVVGEVTGAKY-DKLLEAIQAAR 110
Score = 30.8 bits (70), Expect = 0.19
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 10 VTIGQVDCTVE-KQLCADQEITGYPTLKFFKKG 41
V ++DC E K L + I PT K K+
Sbjct: 56 VIFLKLDCNQENKTLAKELGIRVVPTFKILKEN 88
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 77.4 bits (191), Expect = 7e-18
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 211 VVSLTSENFNDVIKSGT---VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVD 267
V + + F ++K+ V + F WCG CK +AP +E+L + LD ++ K+D
Sbjct: 20 VTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLD 75
Query: 268 CTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317
C QE K L + G+ P+ + K E G+ ++L + I +
Sbjct: 76 CNQEN-KTLAKELGIRVVPTFKILKENSVVGEVTGA-KYDKLLEAIQAAR 123
Score = 72.8 bits (179), Expect = 4e-16
Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 84 VELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
E+ +++F V + + WCG C+++AP +++LA + DV K+DC
Sbjct: 21 TEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEY---LDVIFLKLDCN 77
Query: 141 QH-RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK 186
Q +++ + I+ PT ++ + + G++ + L+ + +
Sbjct: 78 QENKTLAKELGIRVVPTFKILKENSVVGEVTGAKY-DKLLEAIQAAR 123
Score = 30.8 bits (70), Expect = 0.21
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 10 VTIGQVDCTVE-KQLCADQEITGYPTLKFFKKG 41
V ++DC E K L + I PT K K+
Sbjct: 69 VIFLKLDCNQENKTLAKELGIRVVPTFKILKEN 101
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 76.6 bits (189), Expect = 1e-17
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Query: 87 TEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
++ F+ +S VKF CG C +AP + +++ + ++D Q +
Sbjct: 8 SDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY---PQAVFLEVDVHQCQ 64
Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQGS--RTLETLVN 180
+ +I + PT + + ++D++QG+ LE +
Sbjct: 65 GTAATNNISATPTFQFFRNKVRIDQYQGADAVGLEEKIK 103
Score = 68.1 bits (167), Expect = 1e-14
Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 11/111 (9%)
Query: 210 PVVSLTS-ENFNDVIKSGT---VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAK 265
V + S +F + +KF CG C R+AP + + K V +
Sbjct: 2 GVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ----AVFLE 57
Query: 266 VDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
VD Q + + P+ ++N VR +Y G+ D L + I +H
Sbjct: 58 VDVHQ--CQGTAATNNISATPTFQFFRNKVRIDQYQGA-DAVGLEEKIKQH 105
Score = 33.8 bits (78), Expect = 0.014
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
++ + +VD + A I+ PT +FF+ + +++G D L I +
Sbjct: 48 NKYPQAVFLEVDVHQCQGTAATNNISATPTFQFFRNKVRID--QYQGA-DAVGLEEKIKQ 104
Query: 65 QI 66
+
Sbjct: 105 HL 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 80.6 bits (199), Expect = 1e-17
Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 84 VELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
V + E + ++ + F++ HC L P+ + LA+ + +AK+DC
Sbjct: 10 VNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQY--NGQFILAKLDCD 67
Query: 141 QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS 183
+ I F +++ PT+ ++G+ +D FQG + E + +
Sbjct: 68 AEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLD 110
Score = 75.6 bits (186), Expect = 7e-16
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 209 EPVVSLTSENFNDVI-KSGT--VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAK 265
E +V++ N V+ +S T V F++ HC +L P E L + ++AK
Sbjct: 7 ENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ---FILAK 63
Query: 266 VDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+DC E + + Q G+ P++Y+++NG + G + E + +
Sbjct: 64 LDCDAE--QMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDXV 112
Score = 29.4 bits (66), Expect = 1.7
Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 9 RVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFIN 63
+ + ++DC E+ + A + PT+ F+ G F+G + + ++
Sbjct: 58 QFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNG--QPVDGFQGPQPEEAIRALLD 110
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 76.7 bits (189), Expect = 2e-17
Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 7/130 (5%)
Query: 188 PLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPT 246
P + D + V++ T+E + +++ + I F+APWCG C+ AP
Sbjct: 18 PEERIDDGAKCGRCGH-SLFDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPI 76
Query: 247 WEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDL 306
+ E + + KV+ T+ L + + P+I +Y+NG NG+
Sbjct: 77 FAETAAERAGK---VRFVKVN-TEA-EPALSTRFRIRSIPTIMLYRNGKMIDMLNGAVPK 131
Query: 307 EELYQFILKH 316
++ +
Sbjct: 132 APFDNWLDEQ 141
Score = 74.8 bits (184), Expect = 1e-16
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 76 KPIVNEGLVELTEESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSI 134
+ + ++ T E+ +K + + F+APWCG C+S AP++ E A+ V
Sbjct: 33 HSLFDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAER--AGKVRF 90
Query: 135 AKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKAD 194
K++ ++ F I+S PT++ +GK +D G+ N++ + L++ +
Sbjct: 91 VKVNTEAEPALSTRFRIRSIPTIMLYRNGKMIDMLNGAVPKAPFDNWLDEQ---LSRDPN 147
Query: 195 S 195
S
Sbjct: 148 S 148
Score = 31.2 bits (71), Expect = 0.22
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
+V +V+ E L I PT+ ++ G G N+++EQ+
Sbjct: 85 AGKVRFVKVNTEAEPALSTRFRIRSIPTIMLYRNG--KMIDMLNGAVPKAPFDNWLDEQL 142
Query: 67 SETP 70
S P
Sbjct: 143 SRDP 146
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 75.0 bits (185), Expect = 4e-17
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 87 TEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
++ +F++ + V F A WCG C+ + P + L+ + +V ++D +
Sbjct: 7 SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKY---SNVIFLEVDVDDCQ 63
Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQG 171
+ ++KS PT + + G+K+ +F G
Sbjct: 64 DVASESEVKSMPTFQFFKKGQKVGEFSG 91
Score = 67.7 bits (166), Expect = 2e-14
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 211 VVSLTSEN-FNDVIKSGT---VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
V + S+ F + + + V + F A WCG CK + P + L K + ++ +V
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEV 57
Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
D +D+ ++ V P+ +K G + E++G+ + E+L I +
Sbjct: 58 DVDD--CQDVASESEVKSMPTFQFFKKGQKVGEFSGA-NKEKLEATINEL 104
Score = 33.4 bits (77), Expect = 0.023
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
+ S V +VD + + ++ E+ PT +FFKKG + +F G + L INE
Sbjct: 47 EKYSNVIFLEVDVDDCQDVASESEVKSMPTFQFFKKGQKVG--EFSGA-NKEKLEATINE 103
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 74.7 bits (184), Expect = 4e-17
Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
+ F+ W C++L V++ +++ + +VS ID ++ I + F+I + P + I
Sbjct: 26 LYFHTSWAEPCKALKQVFEAISNEP-SNSNVSFLSIDADENSEISELFEISAVPYFIIIH 84
Query: 162 SGKKLDKFQGSRTLETLVNYVSKMKGPLN 190
G L + G+ + V+ + K +N
Sbjct: 85 KGTILKELSGADP-KEYVSLLEDCKNSVN 112
Score = 68.1 bits (167), Expect = 1e-14
Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 10/113 (8%)
Query: 210 PVVSLTS-ENFNDVIKSGT----VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIA 264
PV+ + E F + + + + F W CK L +E + + ++ +
Sbjct: 1 PVIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSN--VSFL 58
Query: 265 KVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317
+D + + ++ + P + G E +G+ D +E + K
Sbjct: 59 SIDADE--NSEISELFEISAVPYFIIIHKGTILKELSGA-DPKEYVSLLEDCK 108
Score = 32.7 bits (75), Expect = 0.039
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 3 NDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFI 62
N+ +S V+ +D ++ EI+ P KG+ + + G D + +
Sbjct: 48 NEPSNSNVSFLSIDADENSEISELFEISAVPYFIIIHKGTILK--ELSGA-DPKEYVSLL 104
Query: 63 NEQISET 69
+ +
Sbjct: 105 EDCKNSV 111
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 74.7 bits (184), Expect = 5e-17
Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 87 TEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
++ +F++ + V F A WCG + + P + L+ + +V ++D +
Sbjct: 18 SKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKY---SNVIFLEVDVDDCQ 74
Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQG 171
+ ++KS PT + + G+K+ +F G
Sbjct: 75 DVASECEVKSMPTFQFFKKGQKVGEFSG 102
Score = 67.7 bits (166), Expect = 2e-14
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Query: 211 VVSLTS-ENFNDVIKSGT---VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
V + S F + + + V + F A WCG K + P + L K + ++ +V
Sbjct: 13 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN----VIFLEV 68
Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
D +D+ ++ V P+ +K G + E++G+ + E+L I +
Sbjct: 69 DVDD--CQDVASECEVKSMPTFQFFKKGQKVGEFSGA-NKEKLEATINEL 115
Score = 32.7 bits (75), Expect = 0.050
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
+ S V +VD + + ++ E+ PT +FFKKG + +F G + L INE
Sbjct: 58 EKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFKKGQKVG--EFSGA-NKEKLEATINE 114
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 75.1 bits (185), Expect = 5e-17
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 70 PKEPSDKPIVNEGLVEL--TEESFEKYVSLGNH-----FVKFYAPWCGHCQSLAPVWQEL 122
P + EG+V ++ F+ ++ + F A WCG C+ +APV+ E
Sbjct: 2 PMAAEEGMAAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEY 61
Query: 123 ASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV 182
A F K+D + + + + +++++ PT L+I+ G + DK G+R + L N +
Sbjct: 62 AKKF---PGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARK-DDLQNTI 117
Query: 183 SK 184
K
Sbjct: 118 VK 119
Score = 64.4 bits (157), Expect = 4e-13
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 215 TSENFNDVIKSGT-----VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
+ F+ + V I F A WCG C+ +AP + E K V KVD
Sbjct: 21 NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPG----AVFLKVDVD 76
Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDE 323
+ K++ + V+ P+ K+G + G+ ++L I+KH +
Sbjct: 77 E--LKEVAEKYNVEAMPTFLFIKDGAEADKVVGA-RKDDLQNTIVKHVGATAAS 127
Score = 35.5 bits (82), Expect = 0.006
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 10 VTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISET 69
+VD K++ + PT F K G+E++ K G L N I + + T
Sbjct: 68 AVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEAD--KVVGA-RKDDLQNTIVKHVGAT 124
Query: 70 PKEPS 74
S
Sbjct: 125 AASAS 129
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 74.7 bits (184), Expect = 7e-17
Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 87 TEESFEKYVSLGNH-----FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
T++ F+ +++ G + F A WCG C+ +APV+ E A F K+D +
Sbjct: 13 TKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKF---PGAIFLKVDVDE 69
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQG 171
+ + +++++++ PT L+I+ G+K+D G
Sbjct: 70 LKDVAEAYNVEAMPTFLFIKDGEKVDSVVG 99
Score = 65.1 bits (159), Expect = 2e-13
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 12/107 (11%)
Query: 215 TSENFNDVIKSGT-----VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
T + F+ + +G V I F A WCG C+ +AP + E K + KVD
Sbjct: 13 TKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPG----AIFLKVDVD 68
Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ KD+ V+ P+ K+G + G ++++ I+
Sbjct: 69 E--LKDVAEAYNVEAMPTFLFIKDGEKVDSVVGG-RKDDIHTKIVAL 112
Score = 30.0 bits (68), Expect = 0.35
Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 3/60 (5%)
Query: 10 VTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISET 69
+VD K + + PT F K G + + G + I +
Sbjct: 60 AIFLKVDVDELKDVAEAYNVEAMPTFLFIKDGEKVD--SVVGG-RKDDIHTKIVALMGSA 116
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 74.3 bits (183), Expect = 8e-17
Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 84 VELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH 142
V+ +E FEK V F A WC C+ +AP++ ELA F +V+ K+D +
Sbjct: 12 VDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKF---PNVTFLKVDVDEL 68
Query: 143 RSICQSFDIKSYPTLLWIESGKKLDKFQG 171
+++ + +++++ PT ++++ GK +DK G
Sbjct: 69 KAVAEEWNVEAMPTFIFLKDGKLVDKTVG 97
Score = 67.0 bits (164), Expect = 4e-14
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 8/117 (6%)
Query: 201 ASEVPVKPEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKH 259
A E V V E+F S + + F A WC CK +AP + EL K +
Sbjct: 1 AEEGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN--- 57
Query: 260 GIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ KVD EL K + + V+ P+ K+G + G+ D + L + KH
Sbjct: 58 -VTFLKVD-VDEL-KAVAEEWNVEAMPTFIFLKDGKLVDKTVGA-DKDGLPTLVAKH 110
Score = 29.2 bits (66), Expect = 0.66
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
+ VT +VD K + + + PT F K G + K G D L + +
Sbjct: 53 KKFPNVTFLKVDVDELKAVAEEWNVEAMPTFIFLKDGKLVD--KTVGA-DKDGLPTLVAK 109
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 73.8 bits (182), Expect = 9e-17
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 84 VELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
V T EK ++ V F+A WCG C+++AP + LA +V AK+D
Sbjct: 3 VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEI---PEVEFAKVDVD 59
Query: 141 QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK 186
Q+ + + + PT ++I+ GK++D+F G+ L +++ K
Sbjct: 60 QNEEAAAKYSVTAMPTFVFIKDGKEVDRFSGANE-TKLRETITRHK 104
Score = 69.6 bits (171), Expect = 3e-15
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 215 TSENFNDVIKS---GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
T+ + +I + + FFA WCG C+ +AP E L ++ + + AKVD Q
Sbjct: 6 TAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPE----VEFAKVDVDQ- 60
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317
+++ + V P+ K+G ++G+ + +L + I +HK
Sbjct: 61 -NEEAAAKYSVTAMPTFVFIKDGKEVDRFSGA-NETKLRETITRHK 104
Score = 31.5 bits (72), Expect = 0.097
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 6 EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
E V +VD ++ A +T PT F K G E + +F G + L I
Sbjct: 47 EIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIKDGKEVD--RFSGA-NETKLRETITR 102
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 74.0 bits (182), Expect = 1e-16
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 87 TEESFEKYVSLGNH-----FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
+ E + + N + F A WCG C+ +APV+ +LA F + K+D +
Sbjct: 19 SLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKF---PNAVFLKVDVDE 75
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQG 171
+ I + F +++ PT L+++ G D+ G
Sbjct: 76 LKPIAEQFSVEAMPTFLFMKEGDVKDRVVG 105
Score = 65.1 bits (159), Expect = 2e-13
Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 13/123 (10%)
Query: 200 NASEVPVKPEPVVSLTS-ENFNDVIK-----SGTVFIKFFAPWCGHCKRLAPTWEELGTK 253
++ V+S+ S E + I+ V I F A WCG C+ +AP + +L K
Sbjct: 3 ASATAAAVAAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKK 62
Query: 254 LLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ V KVD + K + Q V+ P+ K G G+ EEL +
Sbjct: 63 FPN----AVFLKVDVDE--LKPIAEQFSVEAMPTFLFMKEGDVKDRVVGA-IKEELTAKV 115
Query: 314 LKH 316
H
Sbjct: 116 GLH 118
Score = 29.7 bits (67), Expect = 0.51
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
+ +VD K + + PT F K+G + + G LT +
Sbjct: 61 KKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKD--RVVGA-IKEELTAKVGL 117
Query: 65 QIS 67
+
Sbjct: 118 HAA 120
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 74.5 bits (183), Expect = 1e-16
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 9/125 (7%)
Query: 87 TEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
+ FE+ + L V F+APW C + V ELA VS K++
Sbjct: 19 SAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL---PQVSFVKLEAEGVP 75
Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQG--SRTLETLVN-YVSKMKGPLNKKADSPDAEN 200
+ + ++I S PT L+ ++ +K+D+ G + L V + S + K N
Sbjct: 76 EVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFLPSAKVKVDTDPN 135
Query: 201 ASEVP 205
+S V
Sbjct: 136 SSSVD 140
Score = 64.5 bits (157), Expect = 7e-13
Identities = 20/110 (18%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 211 VVSLTS-ENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
V + S F ++++ + + F+APW C ++ EL +L + K+
Sbjct: 14 VEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQ----VSFVKL 69
Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ E ++ + + P+ +KN + +G+ EL + + +H
Sbjct: 70 EA--EGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGA-HAPELTKKVQRH 116
Score = 35.6 bits (82), Expect = 0.008
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
E +V+ +++ ++ EI+ PT FFK + + + G P LT +
Sbjct: 59 KELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKID--RLDGA-HAPELTKKVQR 115
Query: 65 QISETPKEPSDKPIVNEGLVELTEESFEK 93
S PS K V+ + +
Sbjct: 116 HASSGSFLPSAKVKVDTDPNSSSVDKLAA 144
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein
disulfide isomerase, PIPE, dorsal-ventral patterning,
chaperone, WIND mutants; 1.75A {Drosophila melanogaster}
SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Length = 248
Score = 75.9 bits (186), Expect = 3e-16
Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 11/120 (9%)
Query: 206 VKPEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIA 264
V V L +F ++ +KF + ++IA
Sbjct: 13 VTCTGCVDLDELSFEKTVERFPYSVVKFDIASP--YGEKHEAFTAFSKSAHKATKDLLIA 70
Query: 265 KVDCT---QELSKDLCNQEGVD--GFPSIYVYKNGVRTAE---YNGSRDLEELYQFILKH 316
V + +K L ++ VD FPSI+++K + L+ L F+ +
Sbjct: 71 TVGVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSAN 130
Score = 71.6 bits (175), Expect = 1e-14
Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 14/125 (11%)
Query: 82 GLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASH-FKTEEDVSIAKIDC 139
G V+L E SFEK V + VKF + + K +D+ IA +
Sbjct: 17 GCVDLDELSFEKTVERFPYSVVKFDIASPYGE--KHEAFTAFSKSAHKATKDLLIATVGV 74
Query: 140 TQH-----RSICQSFDI--KSYPTLLWIESGKKLD---KFQGSRTLETLVNYVSKMKGPL 189
+ +++ + + K++P++ + TL+ L +VS
Sbjct: 75 KDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPLY 134
Query: 190 NKKAD 194
+
Sbjct: 135 IGRDG 139
Score = 42.0 bits (98), Expect = 1e-04
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 8/67 (11%)
Query: 7 DSRVTIGQVDCTVE-----KQLCADQEIT--GYPTLKFFKKGS-ESEASKFRGTRDLPTL 58
+ I V K L ++ +P++ FK + E L L
Sbjct: 64 TKDLLIATVGVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNL 123
Query: 59 TNFINEQ 65
F++
Sbjct: 124 KAFVSAN 130
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 73.2 bits (180), Expect = 3e-16
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 84 VELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH 142
VE E+ F + V+ V F+APWCG C+ ++P+ +ELA + + K++ +H
Sbjct: 36 VEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDH--AGRLKVVKVNVDEH 93
Query: 143 RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
+ + ++S PTL+ G + + G+ L +
Sbjct: 94 PGLAARYGVRSVPTLVLFRRGAPVATWVGASPRRVLEERLRP 135
Score = 72.4 bits (178), Expect = 6e-16
Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 9/130 (6%)
Query: 188 PLNKKADSPDAENASEVPVKPEPVVSLTSENF-NDVIKSGTVFIKFFAPWCGHCKRLAPT 246
P V + F +V + + FFAPWCG C+ ++P
Sbjct: 15 GTPPPGQVPVCGACKTPLPWV---VEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPI 71
Query: 247 WEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDL 306
EEL + + KV+ E L + GV P++ +++ G A + G+
Sbjct: 72 LEELARDHAGR---LKVVKVN-VDE-HPGLAARYGVRSVPTLVLFRRGAPVATWVGASPR 126
Query: 307 EELYQFILKH 316
L + + +
Sbjct: 127 RVLEERLRPY 136
Score = 28.5 bits (64), Expect = 1.5
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 9 RVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
R+ + +V+ L A + PTL F++G + + + G L + +
Sbjct: 82 RLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRG--APVATWVGASPRRVLEERLRPYL 137
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 73.3 bits (180), Expect = 5e-16
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 82 GLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC 139
G V + + V F+APWCG C+ +AP +Q A+ V +AKID
Sbjct: 47 GKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATL--AGQVRLAKIDT 104
Query: 140 TQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
H ++ I+ P + G++L + G+R LV +V
Sbjct: 105 QAHPAVAGRHRIQGIPAFILFHKGRELARAAGARPASELVGFVRG 149
Score = 72.1 bits (177), Expect = 1e-15
Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 7/130 (5%)
Query: 188 PLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPT 246
P ++ A P + V + + + + F+APWCG C+++AP
Sbjct: 27 PSDRLAAGPKCGICGA-GLITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQ 85
Query: 247 WEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDL 306
++ L + +AK+D TQ + + + G P+ ++ G A G+R
Sbjct: 86 FQAAAATLAGQ---VRLAKID-TQA-HPAVAGRHRIQGIPAFILFHKGRELARAAGARPA 140
Query: 307 EELYQFILKH 316
EL F+
Sbjct: 141 SELVGFVRGK 150
Score = 30.9 bits (70), Expect = 0.29
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 9 RVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQIS 67
+V + ++D + I G P F KG E ++ G R L F+ ++
Sbjct: 96 QVRLAKIDTQAHPAVAGRHRIQGIPAFILFHKG--RELARAAGARPASELVGFVRGKLG 152
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 72.4 bits (178), Expect = 5e-16
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 87 TEESFEKYVSLGNH-----FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
T E++ + + N V F A WCG C+ +AP + +LA +V K+D +
Sbjct: 23 TVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKL---PNVLFLKVDTDE 79
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQG 171
+S+ + I++ PT ++++ GK LDK G
Sbjct: 80 LKSVASDWAIQAMPTFMFLKEGKILDKVVG 109
Score = 64.3 bits (157), Expect = 4e-13
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 8/117 (6%)
Query: 201 ASEVPVKPEPVVSLTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKH 259
+ E V V +E +S T V + F A WCG C+ +AP + +L KL +
Sbjct: 13 SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN--- 69
Query: 260 GIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
++ KVD T EL K + + + P+ K G + G+ +EL I KH
Sbjct: 70 -VLFLKVD-TDEL-KSVASDWAIQAMPTFMFLKEGKILDKVVGA-KKDELQSTIAKH 122
Score = 31.6 bits (72), Expect = 0.11
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
+ V +VD K + +D I PT F K+G + K G L + I +
Sbjct: 65 KKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILD--KVVGA-KKDELQSTIAK 121
Query: 65 QIS 67
++
Sbjct: 122 HLA 124
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 71.9 bits (177), Expect = 5e-16
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 84 VELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
V+ T++SF S G F+APWCG + +APV +EL + + I KID +++
Sbjct: 4 VKATDQSFSAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEM--GDKLKIVKIDVDENQ 61
Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
+ + S PTLL ++ G+ ++ G + E L V+K
Sbjct: 62 ETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNK 102
Score = 66.5 bits (163), Expect = 5e-14
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 211 VVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
+V T ++F+ G V F+APWCG K +AP EEL ++ D + I K+D +
Sbjct: 3 IVKATDQSFSAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDK---LKIVKIDVDE 59
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESH 321
++ + GV P++ V K+G G + E L + + KH +E H
Sbjct: 60 N--QETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHLLEHH 108
Score = 28.0 bits (63), Expect = 1.9
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
++ I ++D ++ + PTL K G E + G + L +N+ +
Sbjct: 47 GDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDG-EVVETSV-GFKPKEALQELVNKHL 104
Query: 67 SE 68
E
Sbjct: 105 LE 106
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 72.0 bits (177), Expect = 5e-16
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 87 TEESFEKYVSLGNHFVK-----FYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
++ +++ ++ G K F A WCG C+ +AP+++ L++ + V K+D
Sbjct: 9 SKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDY--AGKVIFLKVDVDA 66
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQG 171
++ ++ I + PT + G K D G
Sbjct: 67 VAAVAEAAGITAMPTFHVYKDGVKADDLVG 96
Score = 64.3 bits (157), Expect = 3e-13
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Query: 215 TSENFNDVIKSGT-----VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
+ ++ + G + + F A WCG CK +AP +E L ++ KVD
Sbjct: 9 SKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK---VIFLKVDVD 65
Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ G+ P+ +VYK+GV+ + G+ ++L + KH
Sbjct: 66 A--VAAVAEAAGITAMPTFHVYKDGVKADDLVGA-SQDKLKALVAKH 109
Score = 29.6 bits (67), Expect = 0.45
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 9 RVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQIS 67
+V +VD + IT PT +K G +++ G L + + +
Sbjct: 56 KVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKAD--DLVGA-SQDKLKALVAKHAA 111
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 72.0 bits (177), Expect = 6e-16
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 87 TEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSI 145
++ F+ +S V F+A WCG C+ +AP ++E + + + K+D + +
Sbjct: 15 SQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTY---TKMVFIKVDVDEVSEV 71
Query: 146 CQSFDIKSYPTLLWIESGKKLDKFQGSR--TLETLVN 180
+ +I S PT ++G +D G+ L+ L+
Sbjct: 72 TEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIE 108
Score = 71.2 bits (175), Expect = 1e-15
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 215 TSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS 273
+ F+ +I V + FFA WCG CKR+AP +EE +V KVD +
Sbjct: 15 SQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK----MVFIKVDVDE--V 68
Query: 274 KDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
++ +E + P+ VYKNG G+ + L Q I K+
Sbjct: 69 SEVTEKENITSMPTFKVYKNGSSVDTLLGA-NDSALKQLIEKY 110
Score = 32.3 bits (74), Expect = 0.053
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
+++ +VD ++ + IT PT K +K GS + G + L I +
Sbjct: 53 KTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVD--TLLGA-NDSALKQLIEK 109
Query: 65 QIS 67
+
Sbjct: 110 YAA 112
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 71.6 bits (176), Expect = 6e-16
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 83 LVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH 142
+V++T+ F+ V G V F+A CG C+ +APV +ELA+ + E I K+D ++
Sbjct: 5 IVKVTDADFDSKVESGVQLVDFWATACGPCKMIAPVLEELAADY--EGKADILKLDVDEN 62
Query: 143 RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
S +++ S PTL+ + G+ +DK G + E L + K
Sbjct: 63 PSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDK 104
Score = 66.2 bits (162), Expect = 6e-14
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 211 VVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
+V +T +F+ ++SG + F+A CG CK +AP EEL I K+D +
Sbjct: 5 IVKVTDADFDSKVESGVQLVDFWATACGPCKMIAPVLEELAADYEGK---ADILKLDVDE 61
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ + V P++ V+K+G + G + E L + + KH
Sbjct: 62 --NPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 105
Score = 26.9 bits (60), Expect = 3.7
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
+ + I ++D A E+ PTL FK G K G + L +++ +
Sbjct: 49 EGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDG--QPVDKVVGFQPKENLAEVLDKHL 106
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 71.2 bits (175), Expect = 1e-15
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
+ FYA WCG C+ + P +L + DV K D + I + ++ + PT + +
Sbjct: 35 IDFYATWCGPCKMMQPHLTKLIQAY---PDVRFVKCDVDESPDIAKECEVTAMPTFVLGK 91
Query: 162 SGKKLDKFQGSR--TLETLVN 180
G+ + K G+ LE +
Sbjct: 92 DGQLIGKIIGANPTALEKGIK 112
Score = 65.8 bits (161), Expect = 9e-14
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 211 VVSLTS-ENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC 268
+ LT+ F ++IK + I F+A WCG CK + P +L D + K D
Sbjct: 14 ITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD----VRFVKCDV 69
Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILK 315
+ S D+ + V P+ + K+G + G+ + L + I
Sbjct: 70 DE--SPDIAKECEVTAMPTFVLGKDGQLIGKIIGA-NPTALEKGIKD 113
Score = 30.0 bits (68), Expect = 0.34
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
V + D + + E+T PT K G K G + L I +
Sbjct: 57 QAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDG--QLIGKIIGA-NPTALEKGIKD 113
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 70.8 bits (174), Expect = 2e-15
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 69 TPKEPSDKPIVNEGLVELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASH 125
+P+ S I++E + + E + + V F+A WCG C+++AP+++EL+
Sbjct: 2 SPEFTSQLVIMSELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELS-- 59
Query: 126 FKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQG--SRTLETLVN 180
+ D K+D + + ++I + PT + I++G+K+ G +E ++
Sbjct: 60 --EKYDAIFVKVDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMIK 114
Score = 69.7 bits (171), Expect = 3e-15
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 12/110 (10%)
Query: 211 VVSLTS-ENFNDVIKSGT---VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
++ L + +++ V + FFA WCG CK +AP ++E L K+ + KV
Sbjct: 15 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKE-----LSEKYDAIFVKV 69
Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
D + ++ + + P+ KNG + + G+ + ++ I K
Sbjct: 70 DVDK--LEETARKYNISAMPTFIAIKNGEKVGDVVGA-SIAKVEDMIKKF 116
Score = 33.1 bits (76), Expect = 0.033
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
SE +VD ++ I+ PT K G + G + + + I +
Sbjct: 59 SEKYDAIFVKVDVDKLEETARKYNISAMPTFIAIKNGEKVG--DVVGA-SIAKVEDMIKK 115
Query: 65 QI 66
I
Sbjct: 116 FI 117
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 70.5 bits (173), Expect = 2e-15
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 215 TSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS 273
+ + F V V I F+A WCG CK + P +E++ +K + KVD +
Sbjct: 22 SYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDK--VGFYKVDVDE--Q 77
Query: 274 KDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ + G+ P+ +KNG + G+ D +L I +H
Sbjct: 78 SQIAQEVGIRAMPTFVFFKNGQKIDTVVGA-DPSKLQAAITQH 119
Score = 67.8 bits (166), Expect = 2e-14
Identities = 24/101 (23%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 84 VELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
++ K V+ G+ + F+A WCG C+ + PV+++++ + V K+D +
Sbjct: 18 QVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTP-AGDKVGFYKVDVDE 76
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSR--TLETLVN 180
I Q I++ PT ++ ++G+K+D G+ L+ +
Sbjct: 77 QSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQAAIT 117
Score = 29.3 bits (66), Expect = 0.83
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 3 NDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFI 62
+ +V +VD + Q+ + I PT FFK G + + G D L I
Sbjct: 60 DTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVFFKNGQKID--TVVGA-DPSKLQAAI 116
Query: 63 NEQIS 67
+ +
Sbjct: 117 TQHSA 121
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 70.0 bits (172), Expect = 2e-15
Identities = 23/99 (23%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Query: 87 TEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
+ + ++ + + F+A WCG C+ ++P EL++ + ++V + K+D +
Sbjct: 7 DKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELST--QFADNVVVLKVDVDECE 64
Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQG--SRTLETLVN 180
I ++I S PT +++++G K+++F G ++ LE ++
Sbjct: 65 DIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIK 103
Score = 66.5 bits (163), Expect = 4e-14
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 215 TSENFNDVIKSGT---VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
+ + + + V + FFA WCG CK ++P EL T+ DN +V+ KVD +
Sbjct: 7 DKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDE- 62
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+D+ + + P+ KNGV+ E+ G+ + + L I +
Sbjct: 63 -CEDIAMEYNISSMPTFVFLKNGVKVEEFAGA-NAKRLEDVIKAN 105
Score = 33.4 bits (77), Expect = 0.022
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
V + +VD + + + I+ PT F K G + E +F G + L + I I
Sbjct: 50 ADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVE--EFAGA-NAKRLEDVIKANI 106
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 70.5 bits (173), Expect = 2e-15
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
F A WCG C+++ +++A F V AK+D + I + PT +
Sbjct: 42 AWFTAVWCGPCKTIERPMEKIAYEF---PTVKFAKVDADNNSEIVSKCRVLQLPTFIIAR 98
Query: 162 SGKKLDKFQG 171
SGK L G
Sbjct: 99 SGKMLGHVIG 108
Score = 64.7 bits (158), Expect = 3e-13
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 211 VVSLTS-ENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC 268
VV + S E F +++ F A WCG CK + E++ + + AKVD
Sbjct: 21 VVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPT----VKFAKVDA 76
Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ ++ ++ V P+ + ++G G+ + L Q +
Sbjct: 77 DN--NSEIVSKCRVLQLPTFIIARSGKMLGHVIGA-NPGMLRQKLRDI 121
Score = 32.0 bits (73), Expect = 0.083
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
E V +VD ++ + + PT + G G + L + +
Sbjct: 64 YEFPTVKFAKVDADNNSEIVSKCRVLQLPTFIIARSGKMLG--HVIGA-NPGMLRQKLRD 120
Query: 65 QISE 68
I +
Sbjct: 121 IIKD 124
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 71.0 bits (174), Expect = 2e-15
Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Query: 87 TEESFEKYVSLGNH-----FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
T+E +++ +S + F A WCG + +AP + EL+ ++ + ID +
Sbjct: 31 TKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENY---PSLMFLVIDVDE 87
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQG--SRTLETLVN-YVSKMKGP 188
S++IK+ PT ++ G+++DK G L + + +
Sbjct: 88 LSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKITAILDSLPPS 137
Score = 63.3 bits (154), Expect = 1e-12
Identities = 22/132 (16%), Positives = 52/132 (39%), Gaps = 13/132 (9%)
Query: 191 KKADSPDAENASEVPVKPEPVVSLTS-ENFNDVIKSGT-----VFIKFFAPWCGHCKRLA 244
K + ++ + + V +T+ E ++ + + V F A WCG +++A
Sbjct: 6 AKRNHDADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIA 65
Query: 245 PTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR 304
P + EL ++ +D + D + P+ + ++G + + G+
Sbjct: 66 PYYIELSENYPS----LMFLVIDVDE--LSDFSASWEIKATPTFFFLRDGQQVDKLVGA- 118
Query: 305 DLEELYQFILKH 316
+ EL++ I
Sbjct: 119 NKPELHKKITAI 130
Score = 35.2 bits (81), Expect = 0.008
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
+ +D A EI PT F + G + + K G + P L I
Sbjct: 73 ENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVD--KLVGA-NKPELHKKITA 129
Query: 65 QISETPKEPSDK 76
+ P PSDK
Sbjct: 130 ILDSLP--PSDK 139
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 70.0 bits (172), Expect = 2e-15
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 87 TEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSI 145
T F+ ++ V FYA WCG C+ +AP+ ++ + + K+D + +
Sbjct: 13 TASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQY---PQADFYKLDVDELGDV 69
Query: 146 CQSFDIKSYPTLLWIESGKKLDKFQG 171
Q ++ + PTLL ++GK++ K G
Sbjct: 70 AQKNEVSAMPTLLLFKNGKEVAKVVG 95
Score = 69.6 bits (171), Expect = 3e-15
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 215 TSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS 273
T+ F+ I V + F+A WCG CK +AP E+ + K+D +
Sbjct: 13 TASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ----ADFYKLDVDE--L 66
Query: 274 KDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
D+ + V P++ ++KNG A+ G+ + + Q I +
Sbjct: 67 GDVAQKNEVSAMPTLLLFKNGKEVAKVVGA-NPAAIKQAIAAN 108
Score = 30.0 bits (68), Expect = 0.34
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
+ + ++D + E++ PTL FK G E K G + + I
Sbjct: 51 EQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVA--KVVGA-NPAAIKQAIAA 107
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 69.7 bits (171), Expect = 3e-15
Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 84 VELTEESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH 142
+ L ++F+ ++ S V F+A WC C LAP+ +ELA + V K++ ++
Sbjct: 2 IHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDY---PQVGFGKLNSDEN 58
Query: 143 RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
I + + S PT+++ + G+ +D+ G+ E + +
Sbjct: 59 PDIAARYGVMSLPTVIFFKDGEPVDEIIGAVPREEIEIRIKN 100
Score = 67.7 bits (166), Expect = 1e-14
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 211 VVSLTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
V+ L S+NF+ + S + F+A WC C LAP EEL + K++
Sbjct: 1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ----VGFGKLNSD 56
Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ D+ + GV P++ +K+G E G+ EE+ I
Sbjct: 57 EN--PDIAARYGVMSLPTVIFFKDGEPVDEIIGAVPREEIEIRIKNL 101
Score = 28.1 bits (63), Expect = 1.4
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
+ +V G+++ + A + PT+ FFK G + G + I
Sbjct: 43 EDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKDG--EPVDEIIGAVPREEIEIRIKN 100
Query: 65 QISE 68
+ E
Sbjct: 101 LLGE 104
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 70.3 bits (172), Expect = 4e-15
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 15/131 (11%)
Query: 67 SETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHF-------------VKFYAPWCGHCQ 113
S T + G + LT F K ++ + V FYA WCG C+
Sbjct: 8 STTATDTVQAEKPQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCK 67
Query: 114 SLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSR 173
+AP+ +EL+ + + I K++ + + + F I+S PT+ ++ + G+
Sbjct: 68 MVAPILEELSKEY--AGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGEPQVNMGAL 125
Query: 174 TLETLVNYVSK 184
+ E L Y+ K
Sbjct: 126 SKEQLKGYIDK 136
Score = 59.1 bits (143), Expect = 4e-11
Identities = 31/140 (22%), Positives = 49/140 (35%), Gaps = 18/140 (12%)
Query: 190 NKKADSPDAENASEVPVKPEPVVSLTSENF-NDVIKSGT------------VFIKFFAPW 236
+ S A + + + LT F + + F+A W
Sbjct: 3 TSENKSTTATDTVQAEKPQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADW 62
Query: 237 CGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVR 296
CG CK +AP EEL + I I KV+ +E +L G+ P+I+
Sbjct: 63 CGPCKMVAPILEELSKEYAGK---IYIYKVNVDKE--PELARDFGIQSIPTIWFVPMKGE 117
Query: 297 TAEYNGSRDLEELYQFILKH 316
G+ E+L +I K
Sbjct: 118 PQVNMGALSKEQLKGYIDKV 137
Score = 32.5 bits (74), Expect = 0.065
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
++ I +V+ E +L D I PT+ F E G L +I++ +
Sbjct: 81 AGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMK--GEPQVNMGALSKEQLKGYIDKVL 138
Query: 67 SE 68
+
Sbjct: 139 LK 140
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 69.7 bits (171), Expect = 5e-15
Identities = 19/103 (18%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 84 VELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
++ + V++ N + F+A WC C + +L ++ + + + K+D +
Sbjct: 27 LQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYY--GKRIYLLKVDLDK 84
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
+ S+ + F +KS PT++ +++ L + + L+ + K
Sbjct: 85 NESLARKFSVKSLPTIILLKNKTMLARKDHFVSSNDLIALIKK 127
Score = 68.2 bits (167), Expect = 2e-14
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 7/109 (6%)
Query: 210 PVVSLTSENF-NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVD 267
P + N N V T + + FFA WC C + ++L I + KVD
Sbjct: 25 PRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKR---IYLLKVD 81
Query: 268 CTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ + L + V P+I + KN A + +L I KH
Sbjct: 82 LDKN--ESLARKFSVKSLPTIILLKNKTMLARKDHFVSSNDLIALIKKH 128
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 69.8 bits (171), Expect = 5e-15
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 15/118 (12%)
Query: 80 NEGLVELTEESFEKYVSLGNH-------------FVKFYAPWCGHCQSLAPVWQELASHF 126
N ++ LT+ F V V FYA WCG C+ +AP+ ELA +
Sbjct: 8 NGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEY 67
Query: 127 KTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
+ + I K+D + + + +F I+S P++L+I K + QG+ + + +
Sbjct: 68 --DGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPMEGKPEMAQGAMPKASFKKAIDE 123
Score = 58.2 bits (141), Expect = 7e-11
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 212 VSLTSENFNDVIKSGT--VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
V +N + G + F+A WCG CK +AP +EL + IVI KVD
Sbjct: 23 VYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ---IVIYKVDTE 79
Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+E ++L G+ PSI + G+ + I +
Sbjct: 80 KE--QELAGAFGIRSIPSILFIPMEGKPEMAQGAMPKASFKKAIDEF 124
Score = 32.8 bits (75), Expect = 0.047
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
D ++ I +VD E++L I P++ F + +G + I+E +
Sbjct: 68 DGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPME--GKPEMAQGAMPKASFKKAIDEFL 125
Query: 67 SE 68
+
Sbjct: 126 LK 127
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 69.4 bits (170), Expect = 6e-15
Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 11/115 (9%)
Query: 212 VSLTSENF-NDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
+ T E N + ++ G V + FFA WCG C+RL + D + KVD
Sbjct: 8 FNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKD----VTFIKVDVD 63
Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR---DLEELYQFILKHKVESH 321
+ + + + GV P+++ K + D+ + I K K H
Sbjct: 64 K--NGNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSRIKADIEKFKHHHH 116
Score = 66.3 bits (162), Expect = 6e-14
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 84 VELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
T E+ + V F+A WCG CQ L + +A K DV+ K+D +
Sbjct: 8 FNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANK---DVTFIKVDVDK 64
Query: 142 HRSICQSFDIKSYPTLLWIESG----KKLDKFQGSRTLETLVNYVSKMK 186
+ + ++ + S P L +++ K LD+F G+ + + + K K
Sbjct: 65 NGNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGAD-VSRIKADIEKFK 112
Score = 30.5 bits (69), Expect = 0.25
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
Query: 6 EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSES--EASKFRGTRDLPTLTNFIN 63
+ VT +VD ++ P L F KK +F G D+ + I
Sbjct: 51 ANKDVTFIKVDVDKNGNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGA-DVSRIKADIE 109
Query: 64 EQISE 68
+
Sbjct: 110 KFKHH 114
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 68.1 bits (167), Expect = 1e-14
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
L +L +FE+ + V F C CQ + PV +EL ++ EE +D
Sbjct: 6 LEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNY--EESFGFYYVDVE 63
Query: 141 QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
+ +++ Q F +K P +L+ + G+ K G + + ++
Sbjct: 64 EEKTLFQRFSLKGVPQILYFKDGEYKGKMAGDVEDDEVEQMIAD 107
Score = 64.6 bits (158), Expect = 2e-13
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 7/108 (6%)
Query: 211 VVSLTSENF-NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC 268
+ L + F + G + F C C+++ P EEL ++ VD
Sbjct: 6 LEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEES---FGFYYVDV 62
Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+E K L + + G P I +K+G + G + +E+ Q I
Sbjct: 63 EEE--KTLFQRFSLKGVPQILYFKDGEYKGKMAGDVEDDEVEQMIADV 108
Score = 28.8 bits (65), Expect = 0.91
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
+ VD EK L + G P + +FK G K G + + I + +
Sbjct: 52 EESFGFYYVDVEEEKTLFQRFSLKGVPQILYFKDG--EYKGKMAGDVEDDEVEQMIADVL 109
Query: 67 SE 68
+
Sbjct: 110 ED 111
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 68.1 bits (167), Expect = 1e-14
Identities = 23/109 (21%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 209 EPVVSLTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVD 267
+ + LT ENF++VI++ V + +A WC C P ++++ K V +++
Sbjct: 4 DVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK---AVFGRLN 60
Query: 268 CTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ ++ + ++ V P+ ++ NG G+ D + L + K+
Sbjct: 61 VDE--NQKIADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNKY 107
Score = 67.4 bits (165), Expect = 2e-14
Identities = 23/106 (21%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 80 NEGLVELTEESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID 138
+ + LTEE+F++ + + V +A WC C P+++++A + + +++
Sbjct: 3 EDVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKY--KGKAVFGRLN 60
Query: 139 CTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
+++ I + + + PT L +G+ +D G+ +TL + V+K
Sbjct: 61 VDENQKIADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNK 106
Score = 28.1 bits (63), Expect = 1.6
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
+ G+++ +++ + PT F G G D TL + +N+ +
Sbjct: 51 KGKAVFGRLNVDENQKIADKYSVLNIPTTLIFVNG--QLVDSLVGAVDEDTLESTVNKYL 108
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 68.6 bits (168), Expect = 1e-14
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 70 PKEPSDKPIVNEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFK 127
+ ++ ++ LT++SF+ V + G V F+A WCG + +AP+ E+A +
Sbjct: 11 SSGLVPRGSHSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEY- 69
Query: 128 TEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
+ +++AK++ Q+ + I+ PTLL ++G+ G+ + L ++
Sbjct: 70 -QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDA 125
Score = 62.8 bits (153), Expect = 1e-12
Identities = 29/110 (26%), Positives = 59/110 (53%), Gaps = 7/110 (6%)
Query: 209 EPVVSLTSENF-NDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
+ ++ LT ++F DV+K+ G + + F+A WCG K +AP +E+ + + +AK+
Sbjct: 22 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGK---LTVAKL 78
Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ Q + + G+ G P++ ++KNG A G+ +L +F+ +
Sbjct: 79 NIDQ--NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 126
Score = 29.3 bits (66), Expect = 0.85
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
++T+ +++ I G PTL FK G E A+K G L F++ +
Sbjct: 70 QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG-EVAATKV-GALSKGQLKEFLDANL 127
Query: 67 S 67
+
Sbjct: 128 A 128
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 67.5 bits (165), Expect = 3e-14
Identities = 11/86 (12%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160
+ F C +C + ++ + + ++ A+++ ++ + +D PT +++
Sbjct: 30 IIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFL 89
Query: 161 ES-GKKLDKFQGSRTLETLVNYVSKM 185
+ G K QG + ++ +
Sbjct: 90 DKEGNKFYVHQGLMRKNNIETILNSL 115
Score = 64.4 bits (157), Expect = 3e-13
Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 5/116 (4%)
Query: 206 VKPEPVVSLTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIA 264
+K S+ + K G I F C +C + + + + K I A
Sbjct: 6 IKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKE-REGKFNIYYA 64
Query: 265 KVDCTQELSKDLCNQEGVDGFPS-IYVYKNGVRTAEYNGSRDLEELYQFILKHKVE 319
+++ +E + DL + + P+ +++ K G + + G + + V+
Sbjct: 65 RLE--EEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGVK 118
Score = 27.0 bits (60), Expect = 4.4
Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 1/50 (2%)
Query: 15 VDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
++ L + PT F K + +G + +N
Sbjct: 66 LEEEKNIDLAYKYDANIVPTTVFLDKEGN-KFYVHQGLMRKNNIETILNS 114
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 67.5 bits (165), Expect = 4e-14
Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 80 NEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI 137
++E + ++ + V S V FY+P C +C+++ P ++E A + +I
Sbjct: 5 GSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEY--GSSAVFGRI 62
Query: 138 DCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM 185
+ + + + ++ PT + G+ + + G L N V M
Sbjct: 63 NIATNPWTAEKYGVQGTPTFKFFCHGRPVWEQVGQIYPSILKNAVRDM 110
Score = 61.7 bits (150), Expect = 5e-12
Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 7/108 (6%)
Query: 211 VVSLTSENF-NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC 268
++ + V S V + F++P C +CK + P +EE + + V +++
Sbjct: 8 IIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS---AVFGRINI 64
Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ + GV G P+ + +G E G L +
Sbjct: 65 AT--NPWTAEKYGVQGTPTFKFFCHGRPVWEQVGQIYPSILKNAVRDM 110
Score = 29.3 bits (66), Expect = 0.96
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 2/82 (2%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
S G+++ + G PT KFF G + G L N + + +
Sbjct: 54 GSSAVFGRINIATNPWTAEKYGVQGTPTFKFFCHG-RPVWEQV-GQIYPSILKNAVRDML 111
Query: 67 SETPKEPSDKPIVNEGLVELTE 88
+ V + + E
Sbjct: 112 QHGEECIRKSTPVGQDITGYVE 133
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 66.6 bits (163), Expect = 4e-14
Identities = 23/102 (22%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 84 VELTEESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH 142
+E+T+++F++ + V F+A WC C+ +AP+ +E+A + E + +AK+D ++
Sbjct: 4 IEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEY--EGKLLVAKLDVDEN 61
Query: 143 RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
+ + S PT++ + G+ ++ G++ + K
Sbjct: 62 PKTAMRYRVMSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEK 103
Score = 66.6 bits (163), Expect = 4e-14
Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 211 VVSLTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
+ +T +NF++ + V + F+A WC C+ +AP EE+ + +++AK+D
Sbjct: 3 PIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGK---LLVAKLDVD 59
Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ + + V P++ ++K+G G++ I KH
Sbjct: 60 E--NPKTAMRYRVMSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKH 104
Score = 28.4 bits (64), Expect = 1.2
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
+ ++ + ++D + + PT+ FK G G + I + +
Sbjct: 48 EGKLLVAKLDVDENPKTAMRYRVMSIPTVILFKDG--QPVEVLVGAQPKRNYQAKIEKHL 105
Query: 67 SET 69
T
Sbjct: 106 PAT 108
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 66.2 bits (162), Expect = 5e-14
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 211 VVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
++LT NF I+ G V + F+A WCG C+ +AP EE D + +AK++
Sbjct: 2 TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVD 58
Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ + + +Q G+ P++ ++K G + G + E+L +
Sbjct: 59 E--NPETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLADV 103
Score = 63.5 bits (155), Expect = 5e-13
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 84 VELTEESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH 142
+ LT+ +F++ + G V F+A WCG C+ +APV +E A + V++AK++ ++
Sbjct: 3 MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAH--ADKVTVAKLNVDEN 60
Query: 143 RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
F I S PTL+ + G+ + + G + E L ++
Sbjct: 61 PETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLAD 102
Score = 26.5 bits (59), Expect = 5.0
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
+VT+ +++ + + I PTL FK G + G + L + + +
Sbjct: 47 ADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGG--RPVKQLIGYQPKEQLEAQLADVL 104
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 66.2 bits (162), Expect = 6e-14
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 81 EGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID 138
L +T++SFE+ V + V F+A WCG C+ +AP + +A+ + + + I K++
Sbjct: 5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEY--GDKIEIVKLN 62
Query: 139 CTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
++ + + S PTL + G+ G++ +V +
Sbjct: 63 IDENPGTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLED 108
Score = 63.9 bits (156), Expect = 4e-13
Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
Query: 209 EPVVSLTSENF-NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
+ +T ++F DV+K+ V + F+A WCG C+++AP+ E + + D I I K+
Sbjct: 5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK---IEIVKL 61
Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ + + + GV P++ VY+ G G++ + + +
Sbjct: 62 NIDE--NPGTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDF 109
Score = 30.0 bits (68), Expect = 0.31
Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 9 RVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISE 68
++ I +++ A + PTL ++ G E + G + + + + I++
Sbjct: 55 KIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGG-EVAKTIV-GAKPKAAIVRDLEDFIAD 112
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 66.1 bits (162), Expect = 6e-14
Identities = 35/103 (33%), Positives = 62/103 (60%), Gaps = 4/103 (3%)
Query: 84 VELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
+E+T+E+FE+ V S V F+APWCG C+ +AP+ +ELA + E V + K++ +
Sbjct: 4 IEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEY--EGKVKVVKVNVDE 61
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
+ + + I+S PTLL ++G+ +D+ G++ E L + K
Sbjct: 62 NPNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDK 104
Score = 61.9 bits (151), Expect = 2e-12
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 211 VVSLTSENF-NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC 268
V+ +T ENF +V+KS V + F+APWCG C+ +AP EEL + + + KV+
Sbjct: 3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGK---VKVVKVNV 59
Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ + + Q G+ P++ ++KNG G++ E L + I KH
Sbjct: 60 DE--NPNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDKH 105
Score = 26.9 bits (60), Expect = 3.4
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
+ +V + +V+ A I PTL FK G + G + L I++ +
Sbjct: 49 EGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKNG-QVVDRLV-GAQPKEALKERIDKHL 106
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 66.2 bits (162), Expect = 7e-14
Identities = 22/109 (20%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 78 IVNEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIA 135
+++G++ +T+ FE V + V F+A WCG CQ ++P+ A+ + + + +
Sbjct: 4 AMSKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTY--SDRLKVV 61
Query: 136 KIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
K++ + + + + ++ P L ++ + LD +G + + L++++
Sbjct: 62 KLEIDPNPTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDT 110
Score = 61.9 bits (151), Expect = 2e-12
Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 209 EPVVSLTSENF-NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
+ V+++T F ++V+K+ V + F+A WCG C+ ++P D + + K+
Sbjct: 7 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKL 63
Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ + + V+G P++ + K G ++L F+ H
Sbjct: 64 EIDP--NPTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTH 111
Score = 29.2 bits (66), Expect = 0.76
Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 9 RVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQIS 67
R+ + +++ ++ G P L+ K + S G L +F++ ++
Sbjct: 57 RLKVVKLEIDPNPTTVKKYKVEGVPALRLVKGE-QILDSTE-GVISKDKLLSFLDTHLN 113
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A
{Acetobacter aceti}
Length = 107
Score = 65.8 bits (161), Expect = 7e-14
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 81 EGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID 138
E + +++ SF++ V + G V F+A WCG C+ + P E+ F V++AK++
Sbjct: 2 EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEF--AGKVTVAKVN 59
Query: 139 CTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK 186
+ ++ ++S PTL+ + GK +DK G+ L +V +
Sbjct: 60 IDDNPETPNAYQVRSIPTLMLVRDGKVIDKKVGALPKSQLKAWVESAQ 107
Score = 61.9 bits (151), Expect = 2e-12
Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 209 EPVVSLTSENF-NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
E ++++ +F DV+K+ V + F+A WCG CK + P E+G + + +AKV
Sbjct: 2 EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGK---VTVAKV 58
Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317
+ + + N V P++ + ++G + G+ +L ++ +
Sbjct: 59 NIDD--NPETPNAYQVRSIPTLMLVRDGKVIDKKVGALPKSQLKAWVESAQ 107
Score = 26.5 bits (59), Expect = 5.7
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
+VT+ +V+ + ++ PTL + G + K G L ++
Sbjct: 50 AGKVTVAKVNIDDNPETPNAYQVRSIPTLMLVRDG-KVIDKKV-GALPKSQLKAWVES 105
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 66.4 bits (162), Expect = 1e-13
Identities = 18/111 (16%), Positives = 47/111 (42%), Gaps = 10/111 (9%)
Query: 81 EGLVELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI 137
+ +++ ++ + V+F+A W CQS AP++ +L+ + ++ K+
Sbjct: 7 GYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNC-TGLNFGKV 65
Query: 138 DCTQHRSICQSFDIKSY------PTLLWIESGKKLDKFQGSRTLETLVNYV 182
D ++ + + + + PTL+ + GK+ + V++
Sbjct: 66 DVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEAMRRPQIDKKGRAVSWT 116
Score = 59.5 bits (144), Expect = 3e-11
Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 13/118 (11%)
Query: 209 EPVVSLTSENFNDVI---KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAK 265
+ + ++ + K T ++FFA W C+ AP + +L K N G+ K
Sbjct: 7 GYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKY--NCTGLNFGK 64
Query: 266 VDCTQELSKDLCNQEGVD------GFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317
VD + D+ + V P++ +++ G + +
Sbjct: 65 VDVGR--YTDVSTRYKVSTSPLTKQLPTLILFQGGKEAMRRPQIDKKGRAVSWTFSEE 120
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 65.9 bits (161), Expect = 1e-13
Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 13/103 (12%)
Query: 87 TEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
S + S + +KF A WC C + ++ +++ V++ ID H
Sbjct: 27 NTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY----YVTLVDIDVDIHP 82
Query: 144 SICQSFDIKSYPTLLWIESGKK----LDKFQGS--RTLETLVN 180
+ +IK+ PT + + + +G+ +E
Sbjct: 83 KLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGANQNDIEKAFQ 125
Score = 65.2 bits (159), Expect = 2e-13
Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 14/117 (11%)
Query: 211 VVSLTS-ENFNDVIKSGT---VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
+ L + + N V S + IKF A WC C ++ ++ N + + + +
Sbjct: 22 YIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKN-----QLNYYYVTLVDI 76
Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGS---RDLEELYQFILKHKVES 320
D L +Q + P+ Y N + + ++ + K+ +E
Sbjct: 77 DVDI--HPKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGANQNDIEKAFQKYCLEK 131
Score = 35.5 bits (82), Expect = 0.005
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEA--SKFRGTRDLPTLTNFI 62
VT+ +D + +L I PT +F+ + G + +
Sbjct: 66 LNYYYVTLVDIDVDIHPKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGA-NQNDIEKAF 124
Query: 63 NEQISETPK 71
+ E K
Sbjct: 125 QKYCLEKAK 133
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 65.3 bits (160), Expect = 1e-13
Identities = 28/107 (26%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Query: 80 NEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI 137
++ ++ LT++SF+ V + G V F+A WCG C+ +AP+ E+A + + +++AK+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 138 DCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
+ Q+ + I+ PTLL ++G+ G+ + L ++
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDA 105
Score = 61.5 bits (150), Expect = 2e-12
Identities = 30/110 (27%), Positives = 60/110 (54%), Gaps = 7/110 (6%)
Query: 209 EPVVSLTSENF-NDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
+ ++ LT ++F DV+K+ G + + F+A WCG CK +AP +E+ + + +AK+
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKL 58
Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ Q + + G+ G P++ ++KNG A G+ +L +F+ +
Sbjct: 59 NIDQ--NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106
Score = 28.8 bits (65), Expect = 1.0
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
++T+ +++ I G PTL FK G E A+K G L F++ +
Sbjct: 50 QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG-EVAATKV-GALSKGQLKEFLDANL 107
Query: 67 S 67
+
Sbjct: 108 A 108
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 67.9 bits (166), Expect = 1e-13
Identities = 29/124 (23%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 71 KEPSDKPIVNEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKT 128
K +++ ++ LT++SF+ V + G V F+A WCG C+ +AP+ E+A +
Sbjct: 2 KHHHHHHPMSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY-- 59
Query: 129 EEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGP 188
+ +++AK++ Q+ + I+ PTLL ++G+ G+ + L ++
Sbjct: 60 QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLAG 119
Query: 189 LNKK 192
+
Sbjct: 120 SAME 123
Score = 64.5 bits (157), Expect = 2e-12
Identities = 29/110 (26%), Positives = 59/110 (53%), Gaps = 7/110 (6%)
Query: 209 EPVVSLTSENF-NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
+ ++ LT ++F DV+K+ + + F+A WCG CK +AP +E+ + + +AK+
Sbjct: 12 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKL 68
Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ Q + + G+ G P++ ++KNG A G+ +L +F+ +
Sbjct: 69 NIDQ--NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 116
Score = 29.8 bits (67), Expect = 1.0
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
++T+ +++ I G PTL FK G A+ G L F++ +
Sbjct: 60 QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG--EVAATKVGALSKGQLKEFLDANL 117
Query: 67 SETPKE 72
+ + E
Sbjct: 118 AGSAME 123
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.47.1.1
Length = 85
Score = 64.2 bits (157), Expect = 1e-13
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW 159
+ F +P C +C V E F + + + KID R + + + P +
Sbjct: 4 NIEVFTSPTCPYCPMAIEVVDEAKKEF--GDKIDVEKIDIMVDREKAIEYGLMAVPAIA- 60
Query: 160 IESGKKLDKFQGSRTLETLVNYVSK 184
I G +F G+ + E L ++
Sbjct: 61 IN-GV--VRFVGAPSREELFEAIND 82
Score = 58.1 bits (141), Expect = 3e-11
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 232 FFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVY 291
F +P C +C +E + D I + K+D + + + G+ P+I +
Sbjct: 8 FTSPTCPYCPMAIEVVDEAKKEFGDK---IDVEKIDIMVDR--EKAIEYGLMAVPAIAI- 61
Query: 292 KNGVRTAEYNGSRDLEELYQFILKH 316
NGV + G+ EEL++ I
Sbjct: 62 -NGV--VRFVGAPSREELFEAINDE 83
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 65.1 bits (159), Expect = 2e-13
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
V F+A WCG C+ L P +++ + V +AK+D H + +++ + PT+L ++
Sbjct: 36 VDFHAQWCGPCKILGPRLEKMVAKQ--HGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMK 93
Query: 162 SGKKLDKFQGSRTLETLVNYVSKMKG 187
+G +DKF G + + L ++ K+ G
Sbjct: 94 NGDVVDKFVGIKDEDQLEAFLKKLIG 119
Score = 63.1 bits (154), Expect = 9e-13
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 215 TSENF-NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
+F + V+ S T V + F A WCG CK L P E++ K +V+AKVD
Sbjct: 19 DGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGK---VVMAKVDIDD-- 73
Query: 273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
DL + V P++ KNG ++ G +D ++L F+ K
Sbjct: 74 HTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKL 117
Score = 30.0 bits (68), Expect = 0.36
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
+V + +VD L + E++ PT+ K G KF G +D L F+ + I
Sbjct: 61 HGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNG--DVVDKFVGIKDEDQLEAFLKKLI 118
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP:
c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 64.6 bits (158), Expect = 2e-13
Identities = 29/104 (27%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
Query: 83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
+ ++ + S++++V S V F+APWCG C+ +APV ELA + +++ K++
Sbjct: 2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEY--SGKIAVYKLNTD 59
Query: 141 QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
+ I ++I+S PT+L+ ++G++ + G+ TL + + K
Sbjct: 60 EAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEK 103
Score = 61.1 bits (149), Expect = 3e-12
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 211 VVSLTSENF-NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC 268
V + ++ V++S V + F+APWCG CK +AP +EL + I + K++
Sbjct: 2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNT 58
Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ + + Q + P++ +KNG R G+ L I K+
Sbjct: 59 DE--APGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKY 104
Score = 27.2 bits (61), Expect = 3.4
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
++ + +++ + I PT+ FFK G E + S G TLT+ I + +
Sbjct: 48 SGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNG-ERKESII-GAVPKSTLTDSIEKYL 105
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 64.7 bits (158), Expect = 2e-13
Identities = 32/113 (28%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 80 NEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI 137
+++T+ SF V S V F+A WCG C+ +APV +E+A+ D+++AK+
Sbjct: 11 KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATER--ATDLTVAKL 68
Query: 138 DCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLN 190
D + ++F + S PTL+ + G+ + + G++ L+ +S + LN
Sbjct: 69 DVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN 121
Score = 62.0 bits (151), Expect = 2e-12
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 211 VVSLTSENF-NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC 268
+ +T +F DV+ S V + F+A WCG CK +AP EE+ T+ + + +AK+D
Sbjct: 14 TIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATD---LTVAKLDV 70
Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
+ V P++ ++K+G G++ L + +
Sbjct: 71 DTN--PETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDV 116
Score = 29.3 bits (66), Expect = 0.77
Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
+ +T+ ++D + + ++ PTL FK G + G + L +++ +
Sbjct: 60 ATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDG--QPVKRIVGAKGKAALLRELSDVV 117
Query: 67 SET 69
Sbjct: 118 PNL 120
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 64.2 bits (157), Expect = 3e-13
Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 84 VELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
+ +++F+ V S V F+APWCG C+ +APV E+A + ++ + K++ +
Sbjct: 4 GAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEY--KDKLKCVKLNTDE 61
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
++ + I+S PT++ + GKK + G+ T+V V K
Sbjct: 62 SPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEK 104
Score = 60.4 bits (147), Expect = 7e-12
Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 211 VVSLTSENF-NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC 268
++ + F N V++S V + F+APWCG C+ +AP +E+ + D + K++
Sbjct: 3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLN- 58
Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
T E S ++ ++ G+ P+I V+K G + G+ + Q + K+
Sbjct: 59 TDE-SPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKY 105
Score = 28.4 bits (64), Expect = 1.2
Identities = 8/61 (13%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
++ +++ + ++ I PT+ FK G + + G T+ + + +
Sbjct: 49 KDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGG-KKCETII-GAVPKATIVQTVEKYL 106
Query: 67 S 67
+
Sbjct: 107 N 107
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
{Aeropyrum pernix}
Length = 243
Score = 67.2 bits (163), Expect = 4e-13
Identities = 27/229 (11%), Positives = 58/229 (25%), Gaps = 29/229 (12%)
Query: 89 ESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQS 148
V + K C L +++E + + + +
Sbjct: 22 AEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSE 81
Query: 149 FDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS--KMKGPLNKKADSPDAENASEVPV 206
F ++ PT+ ++ ++ G E + V + E +
Sbjct: 82 FKVERVPTVAFLGGEV---RWTGIPAGEEIRALVEVIMRLSEDESGLEDATKEALKSLKG 138
Query: 207 KPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
+ P C +C + + VI
Sbjct: 139 R-------------------VHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNP-VILSE 178
Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILK 315
+ D+ ++ GV PSI + NG + G E+ ++
Sbjct: 179 AVEAYENPDIADKYGVMSVPSIAI--NG--YLVFVGVPYEEDFLDYVKS 223
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 63.4 bits (154), Expect = 1e-12
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160
++F C L + + +S + +I +D Q Q FDI P+ ++
Sbjct: 27 VLRFGRDEDPVCLQLDDILSKTSSDLS--KMAAIYLVDVDQTAVYTQYFDISYIPSTVFF 84
Query: 161 ESGKKLDKFQGSRTLETLVNYV 182
+G+ + GS V
Sbjct: 85 FNGQHMKVDYGSPDHTKFVGSF 106
Score = 63.1 bits (153), Expect = 2e-12
Identities = 18/113 (15%), Positives = 33/113 (29%), Gaps = 13/113 (11%)
Query: 215 TSENFNDVIKSGT---VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
+ + + IKS + ++F C +L + + L I VD Q
Sbjct: 10 SKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDL---SKMAAIYLVDVDQT 66
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
+ PS + NG GS D + ++ +
Sbjct: 67 --AVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSF-----KTKQDF 112
Score = 33.0 bits (75), Expect = 0.052
Identities = 14/95 (14%), Positives = 24/95 (25%), Gaps = 21/95 (22%)
Query: 2 LNDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNF 61
+ I VD +I+ P+ FF G G+ D
Sbjct: 48 TSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFFFNG--QHMKVDYGSPDHTKFVGS 105
Query: 62 INEQ-------------------ISETPKEPSDKP 77
+ I ++P +P + P
Sbjct: 106 FKTKQDFIDLIEVIYRGAMRGKLIVQSPIDPKNIP 140
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 60.8 bits (148), Expect = 2e-12
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
F +P C HC + V +E+A+ + V + I+ ++ + I + PT++
Sbjct: 7 ELFTSPMCPHCPAAKRVVEEVANEM--PDAVEVEYINVMENPQKAMEYGIMAVPTIVING 64
Query: 162 SGKKLDKFQGSRTLETLVNYVSK 184
+F G+ T E LV + K
Sbjct: 65 DV----EFIGAPTKEALVEAIKK 83
Score = 55.7 bits (135), Expect = 2e-10
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG 284
S F +P C HC EE+ ++ D + + ++ + + G+
Sbjct: 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDA---VEVEYINVMEN--PQKAMEYGIMA 56
Query: 285 FPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
P+I + + E+ G+ E L + I K
Sbjct: 57 VPTIVINGDV----EFIGAPTKEALVEAIKKR 84
Score = 25.3 bits (56), Expect = 9.3
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 6/58 (10%)
Query: 9 RVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
V + ++ Q + I PT+ +F G L I +++
Sbjct: 34 AVEVEYINVMENPQKAMEYGIMAVPTIVINGDV------EFIGAPTKEALVEAIKKRL 85
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 60.9 bits (148), Expect = 7e-12
Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 11/118 (9%)
Query: 84 VELTEESFEKYVSLGNH-----FVKFYAPWCGHCQSLAPV--WQELASHFKTEEDVSIAK 136
+ E SF + + FV + WCG C+ L+ V L + + K
Sbjct: 9 IAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADY-FNRHFVNLK 67
Query: 137 IDC--TQHRSICQSFDIKSYPTLLWI-ESGKKLDKFQGSRTLETLVNYVSKMKGPLNK 191
+D + + + + + +YPTLL+I SG+ + + G+ L+ V
Sbjct: 68 MDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVESEGH 125
Score = 56.7 bits (137), Expect = 2e-10
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 8/115 (6%)
Query: 209 EPVVSLTSENFNDVIKS-----GTVFIKFFAPWCGHCKRLAP-TWEELGTKLLDNKHGIV 262
++ +F + +K +F+ F WCG CKRL+ +++ N+H V
Sbjct: 6 ADGIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRH-FV 64
Query: 263 IAKVDCTQELSKDLCNQEGVDGFPSIYVYK-NGVRTAEYNGSRDLEELYQFILKH 316
K+D + +L + GV +P++ +G G+ D EL + +
Sbjct: 65 NLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLG 119
Score = 27.8 bits (62), Expect = 2.7
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 15 VDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQIS 67
++ +L + YPTL F E + G D P L + +
Sbjct: 70 MEKGEGVELRKKYGVHAYPTLLFINSSGE-VVYRLVGAEDAPELLKKVKLGVE 121
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 59.8 bits (145), Expect = 2e-11
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 10/93 (10%)
Query: 83 LVELTEESFEKYVSLGNH----FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID 138
L E++ + V+ + Y C + LA F + K
Sbjct: 5 LREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP---ETKFVKAI 61
Query: 139 CTQHRSICQSFDIKSYPTLLWIESGKKLDKFQG 171
Q + PT+ ++G+ KF G
Sbjct: 62 VNS---CIQHYHDNCLPTIFVYKNGQIEAKFIG 91
Score = 58.2 bits (141), Expect = 4e-11
Identities = 18/119 (15%), Positives = 36/119 (30%), Gaps = 20/119 (16%)
Query: 211 VVSLTSENFNDVI----KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
+ ++ + + + + V I + C + L K + K
Sbjct: 5 LREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPE----TKFVKA 60
Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDL-------EELYQFILKHKV 318
+ P+I+VYKNG A++ G + EEL + +
Sbjct: 61 IVN-----SCIQHYHDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAEVGA 114
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 60.2 bits (146), Expect = 2e-11
Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 10/93 (10%)
Query: 83 LVELTEESFEKYVSLGNH----FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID 138
L E++ + V+ + Y C + LA F + K
Sbjct: 12 LREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP---ETKFVKAI 68
Query: 139 CTQHRSICQSFDIKSYPTLLWIESGKKLDKFQG 171
+ + PT+ ++G+ KF G
Sbjct: 69 VNS---CIEHYHDNCLPTIFVYKNGQIEGKFIG 98
Score = 58.3 bits (141), Expect = 6e-11
Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 20/119 (16%)
Query: 211 VVSLTSENFNDVI----KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
+ ++ + + + K V I + C + L K + K
Sbjct: 12 LREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPE----TKFVKA 67
Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDL-------EELYQFILKHKV 318
+ P+I+VYKNG ++ G + EEL + +
Sbjct: 68 IVN-----SCIEHYHDNCLPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEVGA 121
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy,
IGE, conformational diversity, multispecficity,
redox-active center; 2.77A {Escherichia coli} SCOP:
c.47.1.1
Length = 123
Score = 57.9 bits (140), Expect = 8e-11
Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 80 NEGLVELTEESFEKYV--SLGNHFVKFYAPWCG--------------HCQSLAPVWQELA 123
++ ++ LT++SF+ V + G V F+A WCG C+ +AP+ E+A
Sbjct: 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIA 61
Query: 124 SHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS 183
+ + +++AK++ Q+ + I+ PTLL ++G+ G+ + L ++
Sbjct: 62 DEY--QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 119
Query: 184 K 184
Sbjct: 120 A 120
Score = 54.4 bits (131), Expect = 1e-09
Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 21/124 (16%)
Query: 209 EPVVSLTSENF-NDVIKS-GTVFIKFFAPWCG--------------HCKRLAPTWEELGT 252
+ ++ LT ++F DV+K+ G + + F+A WCG CK +AP +E+
Sbjct: 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIAD 62
Query: 253 KLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQF 312
+ + +AK++ Q + + G+ G P++ ++KNG A G+ +L +F
Sbjct: 63 EYQGK---LTVAKLNIDQ--NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 117
Query: 313 ILKH 316
+ +
Sbjct: 118 LDAN 121
Score = 28.6 bits (64), Expect = 1.2
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
++T+ +++ I G PTL FK G E A+K G L F++ +
Sbjct: 65 QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG-EVAATKV-GALSKGQLKEFLDANL 122
Query: 67 S 67
+
Sbjct: 123 A 123
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide
formation, redox partner, oxidoreductase; 1.66A
{Synechococcus SP}
Length = 106
Score = 57.0 bits (137), Expect = 1e-10
Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 21/101 (20%)
Query: 97 LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC------TQHRSICQSF 149
L Y A WC HCQ ++ + ++C T C
Sbjct: 11 LRQIGGTMYGAYWCPHCQDQKELFGAAFDQ--------VPYVECSPNGPGTPQAQECTEA 62
Query: 150 DIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLN 190
I SYPT WI +G+ + G R+LE L S
Sbjct: 63 GITSYPT--WIINGR---TYTGVRSLEALAVA-SGYPLEEG 97
Score = 50.1 bits (119), Expect = 3e-08
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 18/84 (21%)
Query: 230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE----LSKDLCNQEGVDGF 285
+ A WC HC+ + + + V+C+ C + G+ +
Sbjct: 17 TMYGAYWCPHCQDQKELFGAAFDQ---------VPYVECSPNGPGTPQAQECTEAGITSY 67
Query: 286 PSIYVYKNGVRTAEYNGSRDLEEL 309
P+ + NG Y G R LE L
Sbjct: 68 PTWII--NGRT---YTGVRSLEAL 86
Score = 30.1 bits (67), Expect = 0.35
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 13/69 (18%)
Query: 6 EDSRVTIGQVDC------TVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLT 59
+ + V+C T + Q C + IT YPT + G R L L
Sbjct: 35 GAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWII-------NGRTYTGVRSLEALA 87
Query: 60 NFINEQISE 68
+ E
Sbjct: 88 VASGYPLEE 96
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD,
structural genomics, protein structure initiative; 1.80A
{Rhodopseudomonas palustris}
Length = 137
Score = 57.0 bits (137), Expect = 2e-10
Identities = 17/117 (14%), Positives = 41/117 (35%), Gaps = 6/117 (5%)
Query: 81 EGLVELTEESFEKYVSL-GNHFVKFYAP---WCGHCQSLAPVWQELASHFKTEEDVSIAK 136
+ E + + +++ G V F+ LA V EL + F + A+
Sbjct: 15 NAPTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAF--PGRLVAAE 72
Query: 137 IDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKA 193
+ R + F + P+L ++ + L + + + + M +++
Sbjct: 73 VAAEAERGLMARFGVAVCPSLAVVQPERTLGVIAKIQDWSSYLAQIGAMLAEVDQPG 129
Score = 36.6 bits (84), Expect = 0.003
Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 9/112 (8%)
Query: 206 VKPEPVVSLTSENFND-VIKSGTVFIKFFAP---WCGHCKRLAPTWEELGTKLLDNKHGI 261
+P + +D + SG + + FF LA EL +
Sbjct: 12 ARPNAPTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGR---L 68
Query: 262 VIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
V A+V E + L + GV PS+ V + +D I
Sbjct: 69 VAAEVAAEAE--RGLMARFGVAVCPSLAVVQPERTLGVIAKIQDWSSYLAQI 118
Score = 35.0 bits (80), Expect = 0.010
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
Query: 2 LNDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNF 61
L ++ R+ +V E+ L A + P+L + +D +
Sbjct: 60 LINAFPGRLVAAEVAAEAERGLMARFGVAVCPSLAVVQPE--RTLGVIAKIQDWSSYLAQ 117
Query: 62 INEQISETPKEP 73
I ++E +
Sbjct: 118 IGAMLAEVDQPG 129
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
blood coagulation, oxidoreduc blood
coagulation,oxidoreductase; HET: U10; 3.60A
{Synechococcus SP}
Length = 291
Score = 59.3 bits (142), Expect = 3e-10
Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 10/93 (10%)
Query: 99 NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC-TQHRSICQSFDIKSYPTL 157
+ A WC HCQ ++ V + T C I SYPT
Sbjct: 199 IGGTMYGAYWCPHCQDQKELFGAAFDQVPY---VECSPNGPGTPQAQECTEAGITSYPT- 254
Query: 158 LWIESGKKLDKFQGSRTLETLVNYVSKMKGPLN 190
WI +G+ + G R+LE L S
Sbjct: 255 -WIINGR---TYTGVRSLEALAVA-SGYPLEEG 282
Score = 49.6 bits (117), Expect = 4e-07
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 18/85 (21%)
Query: 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE----LSKDLCNQEGVDG 284
+ A WC HC+ + + + V+C+ C + G+
Sbjct: 201 GTMYGAYWCPHCQDQKELFGAAFDQ---------VPYVECSPNGPGTPQAQECTEAGITS 251
Query: 285 FPSIYVYKNGVRTAEYNGSRDLEEL 309
+P+ + NG Y G R LE L
Sbjct: 252 YPTWII--NGRT---YTGVRSLEAL 271
Score = 35.4 bits (80), Expect = 0.020
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 13/64 (20%)
Query: 15 VDC------TVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISE 68
V+C T + Q C + IT YPT + + G R L L + E
Sbjct: 229 VECSPNGPGTPQAQECTEAGITSYPTWIINGR-------TYTGVRSLEALAVASGYPLEE 281
Query: 69 TPKE 72
E
Sbjct: 282 GRLE 285
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 56.1 bits (135), Expect = 3e-10
Identities = 13/110 (11%), Positives = 33/110 (30%), Gaps = 10/110 (9%)
Query: 209 EPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVD 267
+ + T + + T C +C++ A T + + I ++
Sbjct: 12 KDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVV-----AETKAHIYFIN 66
Query: 268 CTQ----ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + ++ G+ P +G + S +E+ F
Sbjct: 67 SEEPSQLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFA 116
Score = 51.1 bits (122), Expect = 2e-08
Identities = 13/109 (11%), Positives = 35/109 (32%), Gaps = 11/109 (10%)
Query: 81 EGLVELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC 139
+ L T ++ + C +C+ A + + E I I+
Sbjct: 12 KDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVA----ETKAHIYFINS 67
Query: 140 TQH------RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV 182
+ ++ + I + P + I G+ + S + + + ++
Sbjct: 68 EEPSQLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFA 116
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 55.2 bits (133), Expect = 9e-10
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 6/99 (6%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKD--LCNQEGVDGF 285
V + +A WC CK ++ V+ + + T ++D L V G
Sbjct: 34 VMLDLYADWCVACKEFEKYTFSD-PQVQKALADTVLLQANVTANDAQDVALLKHLNVLGL 92
Query: 286 PSIYVY-KNG--VRTAEYNGSRDLEELYQFILKHKVESH 321
P+I + G A G D E + + H
Sbjct: 93 PTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQPHHH 131
Score = 55.2 bits (133), Expect = 9e-10
Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 7/98 (7%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT----QHRSICQSFDIKSYPT 156
+ YA WC C+ K D + + + T Q ++ + ++ PT
Sbjct: 35 MLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPT 94
Query: 157 LLWI-ESGKKLD--KFQGSRTLETLVNYVSKMKGPLNK 191
+L+ G++ + G ET ++ + +
Sbjct: 95 ILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQPHHHH 132
Score = 29.8 bits (67), Expect = 0.50
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 14 QVDCTVE----KQLCADQEITGYPTLKFF-KKGSESEASKFRGTRDLPTLTNFINE 64
Q + T L + G PT+ FF +G E ++ G D T + + +
Sbjct: 70 QANVTANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD 125
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.70A
{Shigella flexneri 2A} PDB: 2hfd_A
Length = 140
Score = 54.7 bits (131), Expect = 2e-09
Identities = 19/136 (13%), Positives = 43/136 (31%), Gaps = 7/136 (5%)
Query: 67 SETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELA 123
++TP + + ++ G ++E + +++ + + EL
Sbjct: 3 NDTPFDALWQRMLARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELL 62
Query: 124 SHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS 183
F + +A D Q +I F +P L G G ++
Sbjct: 63 HEF-PDYTWQVAIADLEQSEAIGDRFGAFRFPATLVFTGGNYRGVLNGIHPWAE---LIN 118
Query: 184 KMKGPLNKKADSPDAE 199
M+G + + + E
Sbjct: 119 LMRGLVEPQQERASLE 134
Score = 30.4 bits (68), Expect = 0.44
Identities = 9/69 (13%), Positives = 17/69 (24%), Gaps = 2/69 (2%)
Query: 6 EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
D + D + + +P F G+ G L N +
Sbjct: 66 PDYTWQVAIADLEQSEAIGDRFGAFRFPATLVFTGGNYRGV--LNGIHPWAELINLMRGL 123
Query: 66 ISETPKEPS 74
+ + S
Sbjct: 124 VEPQQERAS 132
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 49.7 bits (118), Expect = 1e-07
Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQ-SFDIKSYPTLLW 159
V + WCG C++L P + E + + + ++ + S D P +L+
Sbjct: 50 MVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILF 109
Query: 160 I-ESGKKLDKFQGSRTLETLVNYVSKMK 186
+ SGK + + + +
Sbjct: 110 LDPSGKVHPEIINENGNPSYKYFYVSAE 137
Score = 44.7 bits (105), Expect = 7e-06
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 3/86 (3%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
+ + WCG CK L P + E + + V+ ++ +E + + +G P
Sbjct: 49 LMVIIHKSWCGACKALKPKFAESTEISELSHN-FVMVNLEDEEEPKDEDFSPDG-GYIPR 106
Query: 288 IYVY-KNGVRTAEYNGSRDLEELYQF 312
I +G E F
Sbjct: 107 ILFLDPSGKVHPEIINENGNPSYKYF 132
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 5e-07
Identities = 49/316 (15%), Positives = 92/316 (29%), Gaps = 128/316 (40%)
Query: 58 LTNFIN--EQISETPKEPSDKP----IVNEGLV-------ELTEESFEKYVSLGNHFVKF 104
L +++ + + TP E ++GLV + ESF V + F
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL-F 304
Query: 105 YAPWCG-HCQ------SLAP-VWQE------------LA-----------------SHFK 127
+ G C SL P + ++ L+ SH
Sbjct: 305 ---FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 128 TEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKG 187
+ V I+ ++ ++ + P ++L L + K K
Sbjct: 362 AGKQVEISLVNGAKNLVVS------GPP-----------------QSLYGLNLTLRKAK- 397
Query: 188 PLNKKADSPDAENASEVPV---KPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLA 244
+P + S +P K + F+ +P+ H L
Sbjct: 398 -------APSGLDQSRIPFSERKLKFS---------------NRFLPVASPF--HSHLLV 433
Query: 245 PTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVY--KNGVRTAEYNG 302
P + + L+ K+ + +KD+ P VY +G +G
Sbjct: 434 PASDLINKDLV--KNNVSFN--------AKDI-------QIP---VYDTFDGSDLRVLSG 473
Query: 303 SRDLEELYQFILKHKV 318
S E + I++ V
Sbjct: 474 S-ISERIVDCIIRLPV 488
Score = 50.0 bits (119), Expect = 6e-07
Identities = 63/412 (15%), Positives = 119/412 (28%), Gaps = 161/412 (39%)
Query: 49 FRGTRDLPTLTNFINEQISET-----PKEPSDKPIVNE---GLVELTEESFEKYVSLGNH 100
+PT + FI Q+ E P EP++ ++ EL K+ LG
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILP-EPTEGFAADDEPTTPAEL----VGKF--LG-- 66
Query: 101 FVKFYAPW--CGH-CQSLAPVWQELASHFKTEEDV-SI-AKIDCTQHRSICQSFD-IKSY 154
+V G Q L E + + D+ ++ AK+ ++ ++ + IK+Y
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 155 ---------------PTLLW--IESGK-KL-DKF--QG---------------------- 171
+ L+ + G +L F QG
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD 186
Query: 172 -----SRTLETLVNYVSKMKGP----------LNKKADSPDAENASEVPVKPEPVVSLTS 216
+ TL L+ + L +++PD + +P+ P++ +
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS-CPLIGVIQ 245
Query: 217 ---------------ENFNDVIKSGTVFIK----------------FFAP---------W 236
+K T + FF +
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Query: 237 CG-HCKRLAPT---WEELGTKLLDNKHGI------VIAKVDCTQE-LSK--DLCNQEGVD 283
G C P + L+N G+ + + TQE + + N
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS---NLTQEQVQDYVNKTNSH--- 359
Query: 284 GFPS---IYVYKNGVRTAEYNGSRDL------EELYQFIL---KHKVESHDE 323
P+ + + + NG+++L + LY L K K S +
Sbjct: 360 -LPAGKQVEI-------SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Score = 43.9 bits (103), Expect = 7e-05
Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 40/140 (28%)
Query: 118 VWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI----ESGKKLDKFQGSR 173
VW +HFK SI I + + P L I E GK++ + +
Sbjct: 1645 VWNRADNHFKDTYGFSILDI-------------VINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 174 TLETLVNYVSKMKGPLNKKADSPDAENASEVPVK-PEPVVSLTSEN------------FN 220
ET+V+ K + + K+ + E+++ + + ++S T + F
Sbjct: 1692 IFETIVDGKLKTE-KIFKEIN----EHSTSYTFRSEKGLLSAT-QFTQPALTLMEKAAFE 1745
Query: 221 DVIKSGTV-FIKFFAPWCGH 239
D+ G + FA GH
Sbjct: 1746 DLKSKGLIPADATFA---GH 1762
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 47.4 bits (112), Expect = 2e-06
Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 8/122 (6%)
Query: 54 DLPTLTNFINEQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH----FVKFYAPWC 109
D L + + + + ++ S P + E F + + V Y
Sbjct: 86 DENCLRKYRRQCMQDMHQKLSFGPRYGFVYELESGEQFLETIEKEQKITTIVVHIYEDGI 145
Query: 110 GHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKF 169
C +L LA+ + V KI + F PTLL + G+ L F
Sbjct: 146 KGCDALNSSLICLAAEYP---MVKFCKIKA-SNTGAGDRFSSDVLPTLLVYKGGELLSNF 201
Query: 170 QG 171
Sbjct: 202 IS 203
Score = 45.8 bits (108), Expect = 6e-06
Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 18/115 (15%)
Query: 215 TSENFNDVI----KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
+ E F + I K T+ + + C L + L + + K+ +
Sbjct: 119 SGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPM----VKFCKIKASN 174
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNG------VRTAEYNGSR-DLEELYQFILKHKV 318
++ D P++ VYK G + E ++ F+ ++ +
Sbjct: 175 ---TGAGDRFSSDVLPTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEYGL 226
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 2e-06
Identities = 38/294 (12%), Positives = 85/294 (28%), Gaps = 49/294 (16%)
Query: 3 NDSEDS-RVTIGQVDCTVEKQLCADQEITG-YPTLKFFKKGSESEASKFRGTRDLPTLTN 60
D +D + + + + + + + ++G E KF
Sbjct: 36 KDVQDMPKSILSKEEI--DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-K 92
Query: 61 FINEQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQ 120
F+ I ++PS + + + + + +A + + L P +
Sbjct: 93 FLMSPIKTEQRQPS-----------MMTRMYIEQRDRLYNDNQVFAKY--NVSRLQPYLK 139
Query: 121 --ELASHFKTEEDVSI-----------AKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD 167
+ + ++V I A C ++ C+ D K + W+
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK-MDFKIF----WLNLKNCNS 194
Query: 168 KFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFN------D 221
LE L + ++ ++D ++ E L S+ +
Sbjct: 195 P---ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 222 VIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKD 275
+++ F CK L T + T L I+ + L+ D
Sbjct: 252 NVQNAKA-WNAFN---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 44.6 bits (105), Expect = 1e-05
Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 10/123 (8%)
Query: 54 DLPTLTNFINEQISETPKEPSDKPIVNEGLVELT-EESFEKYVSLGNH----FVKFYAPW 108
D L + + + + ++ S P + EL E F + + V Y
Sbjct: 73 DEGCLRKYRRQCMQDMHQKLSFGPRYGF-VYELETGEQFLETIEKEQKVTTIVVNIYEDG 131
Query: 109 CGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDK 168
C +L + LA+ + V KI + F PTLL + G+ +
Sbjct: 132 VRGCDALNSSLECLAAEYP---MVKFCKIRASNT-GAGDRFSSDVLPTLLVYKGGELISN 187
Query: 169 FQG 171
F
Sbjct: 188 FIS 190
Score = 40.4 bits (94), Expect = 3e-04
Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 18/115 (15%)
Query: 215 TSENFNDVI----KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
T E F + I K T+ + + C L + E L + K K+ +
Sbjct: 106 TGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVK----FCKIRASN 161
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNG------VRTAEYNGSR-DLEELYQFILKHKV 318
++ D P++ VYK G + AE ++ F+ ++ +
Sbjct: 162 T---GAGDRFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEYGL 213
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 42.3 bits (99), Expect = 2e-05
Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 1/94 (1%)
Query: 220 NDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQ 279
+D K+ + F P C +C R + + + ++ L L
Sbjct: 13 DDDDKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGR-AAPVQRLQMRDPLPPGLELA 71
Query: 280 EGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
V P+ + V + G + + +
Sbjct: 72 RPVTFTPTFVLMAGDVESGRLEGYPGEDFFWPML 105
Score = 35.8 bits (82), Expect = 0.004
Identities = 10/78 (12%), Positives = 25/78 (32%), Gaps = 6/78 (7%)
Query: 98 GNHFVKFYAPWCGHCQ----SLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKS 153
+ F P C +C +AP + + V ++ + + +
Sbjct: 19 ELRLLMFEQPGCLYCARWDAEIAPQYPL--TDEGRAAPVQRLQMRDPLPPGLELARPVTF 76
Query: 154 YPTLLWIESGKKLDKFQG 171
PT + + + + +G
Sbjct: 77 TPTFVLMAGDVESGRLEG 94
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 42.6 bits (100), Expect = 2e-05
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 15/99 (15%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT-----QELSKDLCNQEGV 282
+ F A WC C+ L + L KH + K+D ELS+
Sbjct: 32 TLLVFGANWCTDCRALDKSLRNQKNTALIAKH-FEVVKIDVGNFDRNLELSQAY-GDPIQ 89
Query: 283 DGFPSIYVY-KNG-VRTAEYNG------SRDLEELYQFI 313
DG P++ V +G VR G + +Y F
Sbjct: 90 DGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFF 128
Score = 39.1 bits (91), Expect = 3e-04
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---QHRSICQSFDIKS---Y 154
+ F A WC C++L + + + + KID ++ + Q++
Sbjct: 33 LLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGI 92
Query: 155 PTLLWIESGKKLDKFQGSRTLET 177
P ++ + S K+ L
Sbjct: 93 PAVVVVNSDGKVRYTTKGGELAN 115
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 40.8 bits (96), Expect = 1e-04
Identities = 20/118 (16%), Positives = 33/118 (27%), Gaps = 30/118 (25%)
Query: 93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFK----------TEEDVSIAK------ 136
KY + F+ CGHCQ P + + E
Sbjct: 32 KYT-----ILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSK 86
Query: 137 --------IDCTQHRSICQSFDIKSYPTLLWI-ESGKKLDKFQGSRTLETLVNYVSKM 185
D H ++DI + P L + ++ + K G L+ + K
Sbjct: 87 KIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKS 144
Score = 39.2 bits (92), Expect = 4e-04
Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 26/112 (23%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK------------- 274
+ F+ CGHC++ P + K GI + + ++ +
Sbjct: 34 TILFFWDSQCGHCQQETPKLYDWWLKNRAK--GIQVYAANIERKDEEWLKFIRSKKIGGW 91
Query: 275 ----------DLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILK 315
D + P +YV KN V A+ G +L++ K
Sbjct: 92 LNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEK 143
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 39.3 bits (92), Expect = 3e-04
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 228 VFIKFFAPWCGHCKRLAP-TW--EELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG 284
V + F + C +C+++ + L V+A V ++L + V G
Sbjct: 22 VMVYFHSEHCPYCQQMNTFVLSDPGVSRLL--EAR-FVVASVSVDTPEGQELARRYRVPG 78
Query: 285 FPSIYVY 291
P+
Sbjct: 79 TPTFVFL 85
Score = 37.7 bits (88), Expect = 0.001
Identities = 14/97 (14%), Positives = 39/97 (40%), Gaps = 19/97 (19%)
Query: 101 FVKFYAPWCGHCQSL-------APVWQELASHFKTEEDVSIAKIDCT--QHRSICQSFDI 151
V F++ C +CQ + V + L + F +A + + + + + + +
Sbjct: 23 MVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFV------VASVSVDTPEGQELARRYRV 76
Query: 152 KSYPTLLWI----ESGKKLDKFQGSRTLETLVNYVSK 184
PT +++ + +++ + GSR + + +
Sbjct: 77 PGTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQ 113
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 39.0 bits (91), Expect = 6e-04
Identities = 20/156 (12%), Positives = 39/156 (25%), Gaps = 34/156 (21%)
Query: 195 SPDAENASEVPVKPEPVVSLTSENFNDVIKSG----TVFIKFFAPWCGHCKRLAPTWEEL 250
SP +A P + ++ + + IKF+A WC C E+
Sbjct: 5 SPKIVDAGTAT-VPHTMSTMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKW 63
Query: 251 GTKLLDNKHGIVIAKVDCTQELSKD--------------------------LCNQEGVDG 284
+ + V L + + +
Sbjct: 64 AQDAKFS--SANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNISV 121
Query: 285 FP-SIYVYKNGVRTAEYNGSRDLEELYQFILKHKVE 319
+P + K+G GS + + I +
Sbjct: 122 YPSWALIGKDGDVQRIVKGSINEAQALALIRNPNAD 157
Score = 32.4 bits (74), Expect = 0.11
Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 30/124 (24%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR----------------- 143
+KF+A WC C S ++ A K ++ +
Sbjct: 42 LIKFWASWCPLCLSELGQAEKWAQDAK-FSSANLITVASPGFLHEKKDGEFQKWYAGLNY 100
Query: 144 -----------SICQSFDIKSYPTLLWI-ESGKKLDKFQGSRTLETLVNYVSKMKGPLNK 191
+I Q+ +I YP+ I + G +GS + + L
Sbjct: 101 PKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPNADLGS 160
Query: 192 KADS 195
S
Sbjct: 161 LKHS 164
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structu genomics, protein structure initiative;
1.76A {Thermus thermophilus}
Length = 154
Score = 37.3 bits (87), Expect = 0.002
Identities = 24/137 (17%), Positives = 39/137 (28%), Gaps = 32/137 (23%)
Query: 207 KPEPVVSLTSENFNDVIKS---GTVFIKFFAPWCGHCKRLAPTWEELGTKLLD------- 256
+P P L V + I F+A WC CK P + +
Sbjct: 9 EPLPDFLLLDPKGQPVTPATVSKPAVIVFWASWCTVCKAEFPGLHRVAEETGVPFYVISR 68
Query: 257 -------------NKHG----IVIAKVDCTQELSKDLCNQEGVDGFPSIYVY-KNGVRTA 298
+ ++ + D E++ V G P +V + G A
Sbjct: 69 EPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARF----KVLGQPWTFVVDREGKVVA 124
Query: 299 EYNGSRDLEELYQFILK 315
+ G E L +L
Sbjct: 125 LFAGRAGREALLDALLL 141
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 37.1 bits (86), Expect = 0.003
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 196 PDAENASEVPVKPEPVVSLTSENFNDV----IKSGTVFIKFFAPWCGHCKRLAPTWEELG 251
P + S V K + + + TVF F A WC C+ P E
Sbjct: 16 PRGSHMSGVA-KHLGEALKLRKQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFY 74
Query: 252 TKLLDNKHGIVIA 264
K D+K+ +I
Sbjct: 75 EKHHDSKNFEIIL 87
Score = 32.1 bits (73), Expect = 0.14
Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 32/128 (25%)
Query: 64 EQISETPKEPSDKPIVNEGLVELTEESFE-KYVSLGNHFVKFYAPWCGHCQSLAPVWQEL 122
+S K + + + +S K V F F A WC C+ P E
Sbjct: 19 SHMSGVAKHLGEALKLRKQADTADMDSLSGKTV-----FFYFSASWCPPCRGFTPQLVEF 73
Query: 123 ASHFKTEEDVSI----------------AKIDCTQH--------RSICQSFDIKSYPTLL 158
++ I AK+ ++ + + ++S PTL+
Sbjct: 74 YEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLI 133
Query: 159 WI--ESGK 164
+ ++G
Sbjct: 134 GLNADTGD 141
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW
YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 37.0 bits (86), Expect = 0.003
Identities = 22/147 (14%), Positives = 37/147 (25%), Gaps = 24/147 (16%)
Query: 200 NASEVPVKPEPVVSLTSENFNDV----IKSGTVFIKFFAPWCGHCKRLAPTWEELGTKL- 254
++ + L N +K V I F EL K
Sbjct: 6 PEDKIKEASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYA 65
Query: 255 ----------LDNKHGIVIAKVD--------CTQELSKDLCNQEGVDGFPSIYVY-KNGV 295
LD D + V PS+++ +N
Sbjct: 66 SQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNE 125
Query: 296 RTAEYNGSRDLEELYQFILKHKVESHD 322
+A +DL+E + +L+ H
Sbjct: 126 LSARGENIKDLDEAIKKLLEGHHHHHH 152
Score = 26.9 bits (60), Expect = 5.9
Identities = 5/35 (14%), Positives = 10/35 (28%), Gaps = 5/35 (14%)
Query: 93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFK 127
K V + F + +EL + +
Sbjct: 36 KVV-----LIDFTVYNNAMSAAHNLALRELYNKYA 65
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 36.5 bits (85), Expect = 0.003
Identities = 13/110 (11%), Positives = 32/110 (29%), Gaps = 26/110 (23%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---------------- 271
+ F+ WC CK+ P ++ + + + V+
Sbjct: 37 TILHFWTSWCPPCKKELPQFQSFYDAHPSD--SVKLVTVNLVNSEQNQQVVEDFIKANKL 94
Query: 272 -------LSKDLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFI 313
+L + + P+ ++ + G G E+L ++
Sbjct: 95 TFPIVLDSKGELMKEYHIITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT 144
Score = 30.8 bits (70), Expect = 0.28
Identities = 16/116 (13%), Positives = 32/116 (27%), Gaps = 32/116 (27%)
Query: 93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR--------- 143
+ + F+ WC C+ P +Q + V + ++
Sbjct: 35 QKT-----ILHFWTSWCPPCKKELPQFQSFYDAHP-SDSVKLVTVNLVNSEQNQQVVEDF 88
Query: 144 ----------------SICQSFDIKSYPTLLWI-ESGKKLDKFQGSRTLETLVNYV 182
+ + + I + PT + E G+ G T E L +
Sbjct: 89 IKANKLTFPIVLDSKGELMKEYHIITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT 144
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 36.4 bits (84), Expect = 0.003
Identities = 15/111 (13%), Positives = 36/111 (32%), Gaps = 18/111 (16%)
Query: 101 FVKFYAPWCGHCQSL-------APVWQELASHFKTEEDVSIA-KIDCTQHRSICQSFDIK 152
+ CQ L V + HF + D + + Q + +
Sbjct: 46 MINIQNVQDFACQCLNRDVWSNEAVKNIIREHF-----IFWQVYHDSEEGQRYIQFYKLG 100
Query: 153 SYPTLLWI--ESGKKLDKFQG---SRTLETLVNYVSKMKGPLNKKADSPDA 198
+P + + +G+KL ++ S L+ + ++ + + S +
Sbjct: 101 DFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGEHGQLDGLSSSSGPS 151
Score = 35.7 bits (82), Expect = 0.008
Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 228 VFIKFFAPWCGHCKRLAP-TWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP 286
+ I C+ L W K + +H + +V E + + FP
Sbjct: 45 LMINIQNVQDFACQCLNRDVWSNEAVKNIIREH-FIFWQVYHDSEEGQRYIQFYKLGDFP 103
Query: 287 SIYVY--KNGVRTAEYNG---SRDLEELYQFILKH 316
+ + + G + E++ S L+++ F+ +H
Sbjct: 104 YVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGEH 138
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 36.3 bits (84), Expect = 0.004
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 193 ADSPDAENASEVPVKPEPVVSLTSENFNDV----IKSGTVFIKFFAPWCGHCKRLAPTWE 248
+++P A SE ++ E SLT+ + + + V + F A WC C +A +
Sbjct: 1 SNAPRAAGHSEEVLEREASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLD 60
Query: 249 EL 250
L
Sbjct: 61 RL 62
Score = 33.3 bits (76), Expect = 0.058
Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 10/87 (11%)
Query: 93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIK 152
V + F A WC C +A + L ++ ++S+ ID ++
Sbjct: 38 DVV-----ILWFMAAWCPSCVYMADLLDRLTEKYR---EISVIAIDFWTAEALKALG--L 87
Query: 153 SYPTLLWIESGKKLDKFQGSRTLETLV 179
+ P ++ + KF + + +
Sbjct: 88 NKPGYPPPDTPEMFRKFIANYGDPSWI 114
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 36.1 bits (84), Expect = 0.005
Identities = 19/110 (17%), Positives = 29/110 (26%), Gaps = 24/110 (21%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---------------- 271
I F+ P C C P + + + V +
Sbjct: 31 TLINFWFPSCPGCVSEMPKIIKTANDYKNK--NFQVLAVAQPIDPIESVRQYVKDYGLPF 88
Query: 272 -----LSKDLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILK 315
K + G +P+ + K G Y G D +LYQ I
Sbjct: 89 TVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDT 138
Score = 32.3 bits (74), Expect = 0.11
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 28/116 (24%)
Query: 93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFK--------------TEEDVS--IAK 136
K + F+ P C C S P + A+ +K E V +
Sbjct: 29 KVT-----LINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKD 83
Query: 137 IDCT------QHRSICQSFDIKSYPTLLWI-ESGKKLDKFQGSRTLETLVNYVSKM 185
+++ Q+F + YPT + I + G+ L + G L +
Sbjct: 84 YGLPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTA 139
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Length = 148
Score = 36.1 bits (84), Expect = 0.005
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 212 VSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
+S ++E F ++ + + F+A WC + L + NK + + +
Sbjct: 24 LSRSAERF----RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNK-NFAMLGISLDID 78
Query: 272 LSK 274
Sbjct: 79 REA 81
Score = 31.5 bits (72), Expect = 0.14
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 84 VELTEESFE-KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSI 134
+ + E F +Y+ + F+A WC + L +K ++ ++
Sbjct: 24 LSRSAERFRNRYL-----LLNFWASWCDPQPEANAELKRLNKEYKKNKNFAM 70
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 36.1 bits (84), Expect = 0.005
Identities = 15/107 (14%), Positives = 31/107 (28%), Gaps = 23/107 (21%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK------------- 274
VF+ F+ WC CK+ P G+ I V+ +
Sbjct: 29 VFLNFWGTWCEPCKKEFPYMANQYKHFKSQ--GVEIVAVNVGESKIAVHNFMKSYGVNFP 86
Query: 275 -------DLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFI 313
+ + V P+ ++ G G+ ++ ++
Sbjct: 87 VVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYM 133
Score = 35.7 bits (83), Expect = 0.006
Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 29/117 (24%)
Query: 93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR--------- 143
K V F+ F+ WC C+ P HFK + V I ++ + +
Sbjct: 27 KGV-----FLNFWGTWCEPCKKEFPYMANQYKHFK-SQGVEIVAVNVGESKIAVHNFMKS 80
Query: 144 -------------SICQSFDIKSYPTLLWI-ESGKKLDKFQGSRTLETLVNYVSKMK 186
+ ++D+ PT I GK + G+ T + +Y++ +K
Sbjct: 81 YGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIK 137
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 35.7 bits (83), Expect = 0.005
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
+ F+APWC C+ AP ++ + +A +D + + + N+ V F
Sbjct: 28 AVLWFWAPWCPTCQGEAPVVGQVAAS-HPEVTFVGVAGLDQVPAMQEFV-NKYPVKTFTQ 85
Query: 288 IY 289
+
Sbjct: 86 LA 87
Score = 35.3 bits (82), Expect = 0.007
Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 25/113 (22%)
Query: 93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----------- 141
K + F+APWC CQ APV ++A+ V +A +D
Sbjct: 26 KPA-----VLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPV 80
Query: 142 ---------HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM 185
S+ +F + P +++ +D +G + + L V+ +
Sbjct: 81 KTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVDVVRGRMSQDELTRRVTAL 133
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 34.9 bits (81), Expect = 0.009
Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 24/110 (21%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK------------- 274
V++KF+A WC C P +E+ + D+ + + E S+
Sbjct: 25 VYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYK 84
Query: 275 ----------DLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFI 313
L GV +P+ K G + G + + + Q +
Sbjct: 85 NLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTL 134
Score = 31.5 bits (72), Expect = 0.13
Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 34/121 (28%)
Query: 93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR--------- 143
K V ++KF+A WC C + P E+A ++ V + +
Sbjct: 23 KKV-----YLKFWASWCSICLASLPDTDEIAKEAG-DDYVVLTVVSPGHKGEQSEADFKN 76
Query: 144 ------------------SICQSFDIKSYPTLLWI-ESGKKLDKFQGSRTLETLVNYVSK 184
+ +++ ++SYPT +I + GK + G + ++ + +
Sbjct: 77 WYKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKE 136
Query: 185 M 185
+
Sbjct: 137 L 137
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 34.6 bits (80), Expect = 0.012
Identities = 13/99 (13%), Positives = 32/99 (32%), Gaps = 32/99 (32%)
Query: 93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEED-------VSIAK--------- 136
+Y + FY P C +C+ ++ E+ + + E+ + +
Sbjct: 28 QYT-----MLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKA 82
Query: 137 ----------IDCTQHRSICQSFDIKSYPTLLWI-ESGK 164
+ Q +DI++ PT+ + +
Sbjct: 83 VYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKR 121
Score = 34.6 bits (80), Expect = 0.015
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 223 IKSGTVFIKFFAPWCGHCKRLAPTWEEL 250
+K+ + F+ P C +C++ + E+
Sbjct: 25 LKAQYTMLFFYDPDCSNCRKFEKLFAEI 52
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote
structural genomics, structural genomics consortium,
SGC, U function; 1.73A {Plasmodium yoelii}
Length = 160
Score = 34.7 bits (79), Expect = 0.016
Identities = 9/72 (12%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
++F + C + + ++A K I +D T+ +++ ++++
Sbjct: 46 IRFGHDYDPDCMKMDELLYKVADDIK--NFCVIYLVDITEVPDFNTMYELYDPVSVMFFY 103
Query: 162 SGKKLDKFQGSR 173
K + G+
Sbjct: 104 RNKHMMIDLGTG 115
Score = 27.8 bits (61), Expect = 3.6
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 8/83 (9%)
Query: 215 TSENFNDVIKSGT---VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
+ + I + V I+F + C ++ ++ + K+ VI VD T+
Sbjct: 28 SGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDI---KNFCVIYLVDITEV 84
Query: 272 LSKDLCNQEGVDGFPSIYVYKNG 294
D + S+ +
Sbjct: 85 --PDFNTMYELYDPVSVMFFYRN 105
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double
disulfide bridge, membrane protein; 1.60A
{Bradyrhizobium japonicum} SCOP: c.47.1.10
Length = 186
Score = 34.4 bits (79), Expect = 0.022
Identities = 23/138 (16%), Positives = 42/138 (30%), Gaps = 31/138 (22%)
Query: 207 KPEPVVSLTSENFNDV----IKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIV 262
P ++ + + T+ + +A WC C++ P +EL KL +V
Sbjct: 38 LKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVV 97
Query: 263 --------IAKV----------------DCTQELSKDLCNQEGVDGFPSIYVY-KNGVRT 297
K D ++ +DL G P+ + G
Sbjct: 98 AINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEI 157
Query: 298 AEYNGSRDL--EELYQFI 313
A G + E+ + I
Sbjct: 158 ATIAGPAEWASEDALKLI 175
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 33.8 bits (78), Expect = 0.023
Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 26/108 (24%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFK--------TEEDVSIAK-------------IDC 139
+ F+ PWC C + AP ++A+ T DV + D
Sbjct: 28 VLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLND- 86
Query: 140 TQHRSICQSFDIKSYPTLLWI-ESGK--KLDKFQGSRTLETLVNYVSK 184
I +++ P ++ G ++ + + + L V+
Sbjct: 87 -ADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAA 133
Score = 33.8 bits (78), Expect = 0.024
Identities = 15/109 (13%), Positives = 30/109 (27%), Gaps = 27/109 (24%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLD-------------------NKHGIVIAKV-D 267
+ F+ PWC C AP+ ++ +K+ + + D
Sbjct: 27 AVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLND 86
Query: 268 CTQELSKDLCNQEGVDGFPSIYVY-KNG--VRTAEYNGSRDLEELYQFI 313
+ V P+ Y +G + +EL +
Sbjct: 87 ADGVIWARY----NVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRV 131
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 35.0 bits (80), Expect = 0.029
Identities = 17/151 (11%), Positives = 41/151 (27%), Gaps = 40/151 (26%)
Query: 93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR--------- 143
K V + F+A C +CQ P +K + +++ + ++
Sbjct: 83 KVV-----LIDFWAYSCINCQRAIPHVVGWYQAYK-DSGLAVIGVHTPEYAFEKVPGNVA 136
Query: 144 ------------------SICQSFDIKSYPTLLWI-ESGKKLDKFQGSRTLETLVNYVSK 184
+ ++ + +P I +G G V +
Sbjct: 137 KGAANLGISYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQ 196
Query: 185 M------KGPLNKKADSPDAENASEVPVKPE 209
+ L + + + + + PE
Sbjct: 197 LLNDAKPGVKLPQPSSTTTPDLTPRAALTPE 227
Score = 33.4 bits (76), Expect = 0.080
Identities = 18/112 (16%), Positives = 29/112 (25%), Gaps = 28/112 (25%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-ELSKDLCNQE------ 280
V I F+A C +C+R P D+ G+ + V + K N
Sbjct: 85 VLIDFWAYSCINCQRAIPHVVGWYQAYKDS--GLAVIGVHTPEYAFEKVPGNVAKGAANL 142
Query: 281 ------------------GVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFI 313
+P+ Y+ G G D +
Sbjct: 143 GISYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLV 194
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 33.5 bits (77), Expect = 0.029
Identities = 6/65 (9%), Positives = 19/65 (29%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
+ F+A + + K +K + +D + + + + +D
Sbjct: 35 TLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQ 94
Query: 288 IYVYK 292
+
Sbjct: 95 FHEGL 99
Score = 32.0 bits (73), Expect = 0.096
Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 9/76 (11%)
Query: 93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSF--- 149
+Y + F+A + ++ + F + +++ I + SI
Sbjct: 33 RYT-----LLNFWAAYDAESRARNVQLANEVNKFG-PDKIAMCSISMDEKESIFTETVKI 86
Query: 150 DIKSYPTLLWIESGKK 165
D T GK+
Sbjct: 87 DKLDLSTQFHEGLGKE 102
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 33.4 bits (77), Expect = 0.032
Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 23/111 (20%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKH--GIVIAKVDCTQELSK----------- 274
I F++ C CK P E K D + + + + + + K
Sbjct: 32 TLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDIT 91
Query: 275 ---------DLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILK 315
L + + P+ YV+ K G G ++ L + + +
Sbjct: 92 QPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNR 142
Score = 32.7 bits (75), Expect = 0.069
Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 30/113 (26%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFK------------TEEDVSIAKI----------- 137
+ F++ C C+ P E ++ +E+D+ KI
Sbjct: 33 LIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQ 92
Query: 138 ----DCTQHRSICQSFDIKSYPTLLWI-ESGKKLDKFQGSRTLETLVNYVSKM 185
D ++ +F+ + P ++G+ G ++ L V+++
Sbjct: 93 PIFVD--SDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRV 143
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 33.5 bits (77), Expect = 0.034
Identities = 3/28 (10%), Positives = 7/28 (25%)
Query: 223 IKSGTVFIKFFAPWCGHCKRLAPTWEEL 250
+ + P C C + +
Sbjct: 29 FPAEYTLLFINNPGCHACAEMIEGLKAS 56
Score = 32.7 bits (75), Expect = 0.063
Identities = 14/119 (11%), Positives = 32/119 (26%), Gaps = 35/119 (29%)
Query: 93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEED-------VSIAK--------- 136
+Y + P C C + + + +
Sbjct: 32 EYT-----LLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHR 86
Query: 137 ----------IDCTQHRSICQSFDIKSYPTLLWI-ESGKKLDKFQGSRTLETLVNYVSK 184
D +D+++ PTL + ++ L K TL+ + Y+++
Sbjct: 87 NDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLK---DATLQKVEQYLAE 142
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Length = 133
Score = 33.3 bits (76), Expect = 0.037
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 85 ELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
E+ E++ Y+S G +A + L+ + +A + ++ ID +
Sbjct: 10 EIGPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGV--INFGTIDAKAFGA 67
Query: 145 ICQSFDIKS--YPTLLWIESGKKLDKFQGSRTLE 176
+ ++K+ +P I+ K KF + E
Sbjct: 68 HAGNLNLKTDKFPAFA-IQEVAKNQKFPFDQEKE 100
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 33.2 bits (76), Expect = 0.042
Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 32/115 (27%)
Query: 77 PIVNEGLVELTEESFE-KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIA 135
++ ++ S K V F F A WC ++ P + +++ +
Sbjct: 12 NVLKGAAADIALPSLAGKTV-----FFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVM 66
Query: 136 KI------------------------DCTQHRSICQSFDIKSYPTLLWI--ESGK 164
I D + FD+KS PTL+ + +SG
Sbjct: 67 LISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGN 121
Score = 32.0 bits (73), Expect = 0.11
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 227 TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKH-GIVIAKVDCTQELSKDLCNQEGVDGF 285
TVF F A WC + P + + K+ +++ D + E KD +
Sbjct: 30 TVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLAL 89
Query: 286 P 286
P
Sbjct: 90 P 90
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein
structure initiative; 2.00A {Neisseria meningitidis
serogroup B}
Length = 151
Score = 33.2 bits (76), Expect = 0.043
Identities = 14/119 (11%), Positives = 26/119 (21%), Gaps = 27/119 (22%)
Query: 227 TVFIKFFAPWCGHCKRLAPTWEELGTKLLDN--------------------KHG----IV 262
+ +A WCG C++ P + + I
Sbjct: 26 VRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIW 85
Query: 263 IAKVDCTQELSKDLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVES 320
++ K N V P V G + + L + +
Sbjct: 86 RYTGANSRNFMKTYGNT--VGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSKC 142
Score = 27.4 bits (61), Expect = 4.3
Identities = 15/112 (13%), Positives = 31/112 (27%), Gaps = 26/112 (23%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFK------------TEEDVS-----------IAKI 137
V +A WCG C+ P + K T +++ I +
Sbjct: 28 IVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRY 87
Query: 138 DCTQHRSICQSF--DIKSYPTLLWI-ESGKKLDKFQGSRTLETLVNYVSKMK 186
R+ +++ + P + G ++L + V
Sbjct: 88 TGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAH 139
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 33.5 bits (77), Expect = 0.045
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK 274
V ++F A WCG C++ P E+ + + +D + L K
Sbjct: 36 VMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEK 82
Score = 26.5 bits (59), Expect = 9.6
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFK 127
K V ++F A WCG C+ P ++
Sbjct: 34 KVV-----MLQFTASWCGVCRKEMPFIEKDIWLKH 63
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 33.0 bits (76), Expect = 0.045
Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV--DCTQELSKDLCNQEGVDGF 285
++I +A WCG C+ P +EL K I + D ++ +++ ++ + G
Sbjct: 33 IYIDVWATWCGPCRGELPALKELEEKYAGK--DIHFVSLSCDKNKKAWENMVTKDQLKGI 90
Query: 286 PSIYVYKNGVRTAEYN 301
+++ + Y
Sbjct: 91 Q-LHMGTDRTFMDAYL 105
Score = 30.7 bits (70), Expect = 0.33
Identities = 17/125 (13%), Positives = 40/125 (32%), Gaps = 30/125 (24%)
Query: 93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR--------- 143
KY+ ++ +A WCG C+ P +EL + +D+ + C +++
Sbjct: 31 KYI-----YIDVWATWCGPCRGELPALKELEEKYA-GKDIHFVSLSCDKNKKAWENMVTK 84
Query: 144 --------------SICQSFDIKSYPTLLWI-ESGKKLDKFQGSRTLETLVNYVSKMKGP 188
+ ++ I P + + GK + + +++ G
Sbjct: 85 DQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISANMTRPSDPKTAEKFNELLGL 144
Query: 189 LNKKA 193
Sbjct: 145 EGHHH 149
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 33.6 bits (77), Expect = 0.046
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 228 VFIKFFAPWCGHCKRLAPT----WEELGTKLLDNKHGIVIAKV---DCTQELSKDLCNQE 280
V + + WC C+ + EEL + G + + D ++++++D
Sbjct: 62 VILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDN 121
Query: 281 GVDGFPSIY 289
G+D +PSIY
Sbjct: 122 GLD-YPSIY 129
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825
/ FA 1090), DSBC, structural genomics, unknown funct 2;
2.00A {Neisseria gonorrhoeae}
Length = 147
Score = 33.1 bits (75), Expect = 0.046
Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 45/144 (31%)
Query: 219 FNDVIKSGT-----VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIV----------- 262
+ IK F P C CKRL +E++ + + +
Sbjct: 3 LDKAIKEVRGNGKLKVAVFSDPDCPFCKRLEHEFEKMTDVTVYSFMMPIAGLHPDAARKA 62
Query: 263 -----------------------IAKVDCTQELSKD--LCNQEGVDGFPSIYVYKNGVRT 297
+ C +++ L Q G +G P++ V+ NG
Sbjct: 63 QILWCQPDRAKAWTDWMRKGKFPVGGSICDNPVAETTSLGEQFGFNGTPTL-VFPNGRT- 120
Query: 298 AEYNGSRDLEELYQFILKHKVESH 321
+G + +L + I K++ E H
Sbjct: 121 --QSGYSPMPQLEEIIRKNQQEGH 142
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 32.7 bits (74), Expect = 0.047
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 21/111 (18%)
Query: 89 ESFEKYVSLGN---HFVKFYA-------PWCGHCQSLAPVWQELASHFKTEEDVSIAKID 138
E F + V N F F WC C PV +E H E
Sbjct: 13 EEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHIS--EGCVFIYCQ 70
Query: 139 -------CTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSR--TLETLVN 180
+ ++ + + PTLL + +KL + + + +E L +
Sbjct: 71 VGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECLQANLVEMLFS 121
Score = 30.8 bits (69), Expect = 0.21
Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 18/121 (14%)
Query: 209 EPVVSLTSENFNDVIKSG---TVFIKFFA-------PWCGHCKRLAPTWEELGTKLLDNK 258
E V E F+ ++ T+F F WC C + P E + +
Sbjct: 5 EEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGC 64
Query: 259 HGIVIAKVDCTQELSKDLCN----QEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFIL 314
I +V KD N V P++ Y + E + L + +
Sbjct: 65 VFIYC-QVGEKPYW-KDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECLQ--ANLVEMLF 120
Query: 315 K 315
Sbjct: 121 S 121
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 33.1 bits (76), Expect = 0.060
Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 20/99 (20%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK------------- 274
V + F+A WC +C+ P+ + L +V+ V+ + +
Sbjct: 44 VLVNFWASWCPYCRDEMPSMDRLVKSFPKG--DLVVLAVNVEKRFPEKYRRAPVSFNFLS 101
Query: 275 ----DLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEE 308
+ + G + P ++ + G+ G + +
Sbjct: 102 DATGQVQQRYGANRLPDTFIVDRKGIIRQRVTGGIEWDA 140
Score = 30.0 bits (68), Expect = 0.57
Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 28/117 (23%)
Query: 93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----------- 141
K V V F+A WC +C+ P L F + D+ + ++ +
Sbjct: 42 KIV-----LVNFWASWCPYCRDEMPSMDRLVKSFP-KGDLVVLAVNVEKRFPEKYRRAPV 95
Query: 142 --------HRSICQSFDIKSYPTLLWI-ESGKKLDKFQGSRTLET--LVNYVSKMKG 187
+ Q + P + G + G + +V+Y+ ++G
Sbjct: 96 SFNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKSLEG 152
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 32.8 bits (75), Expect = 0.061
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 227 TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIA 264
VF F A WC + P E K ++K+ V+
Sbjct: 30 LVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVF 67
Score = 29.7 bits (67), Expect = 0.65
Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 31/98 (31%)
Query: 93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR--------- 143
K V F F A WC + P E F ++ + +
Sbjct: 29 KLV-----FFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAK 83
Query: 144 ---------------SICQSFDIKSYPTLLWI--ESGK 164
+ + F+++S PTL+ + +SG
Sbjct: 84 MPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGD 121
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative; 1.66A
{Chlorobaculum tepidum}
Length = 165
Score = 32.7 bits (75), Expect = 0.071
Identities = 23/135 (17%), Positives = 37/135 (27%), Gaps = 35/135 (25%)
Query: 93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFK-------------TEEDVS------ 133
K V F+A WC C+S P ++ + +V
Sbjct: 35 KAY-----IVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQ 89
Query: 134 -------IAKIDCTQHRSICQSFDIKSYPTLLWI-ESGKKLDKFQGSRTLETLVNYVSKM 185
+A + + + I PT I SG G R+ V
Sbjct: 90 GIIYPVMMATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMA 149
Query: 186 KGPLNKKADSPDAEN 200
L KA + + +
Sbjct: 150 ---LGAKAATKEGHH 161
Score = 32.7 bits (75), Expect = 0.085
Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 24/111 (21%)
Query: 227 TVFIKFFAPWCGHCKRLAP----TWEELGTKLLD-----------------NKHGIV--I 263
+ FFA WC C+ P + ++ GI+ +
Sbjct: 36 AYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPV 95
Query: 264 AKVDCTQELSKDLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFI 313
+ + G+ G P+ +V +G + G R + + +
Sbjct: 96 MMATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIV 146
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 32.6 bits (74), Expect = 0.071
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 12/72 (16%)
Query: 228 VFIKF-FAPWCGHCKRLAP-TWEELGTKLLDNKHGIVIAKVDCTQELSKD---------L 276
+ + F + WC C ++ + K H + + +VD Q+ + L
Sbjct: 50 IGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVH-LHMVEVDFPQKNHQPEEQRQKNQEL 108
Query: 277 CNQEGVDGFPSI 288
Q V GFP +
Sbjct: 109 KAQYKVTGFPEL 120
Score = 31.0 bits (70), Expect = 0.26
Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 14/82 (17%)
Query: 101 FVKF-YAPWCGHCQSLA------PVWQELAS-HF-----KTEEDVSIAKIDCTQHRSICQ 147
+ F + WC C + ++ A H + + +++ +
Sbjct: 51 GLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKA 110
Query: 148 SFDIKSYPTLLWI-ESGKKLDK 168
+ + +P L++I GK+L +
Sbjct: 111 QYKVTGFPELVFIDAEGKQLAR 132
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 32.6 bits (75), Expect = 0.078
Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 25/111 (22%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---------------- 271
V++ F+A WCG C++ P ++ K G + V+ +
Sbjct: 31 VYLDFWASWCGPCRQSFPWMNQMQAKYKAK--GFQVVAVNLDAKTGDAMKFLAQVPAEFT 88
Query: 272 ----LSKDLCNQEGVDGFPSIYVY-KNGVRTAEYNGSR--DLEELYQFILK 315
GV G P+ ++ +NG ++ G R D E L Q IL
Sbjct: 89 VAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILA 139
Score = 29.9 bits (68), Expect = 0.54
Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 31/118 (26%)
Query: 93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS-------- 144
V ++ F+A WCG C+ P ++ + +K + + ++
Sbjct: 29 SVV-----YLDFWASWCGPCRQSFPWMNQMQAKYK-AKGFQVVAVNLDAKTGDAMKFLAQ 82
Query: 145 --------------ICQSFDIKSYPTLLWI-ESGKKLDKFQGSRTL--ETLVNYVSKM 185
+ + +K PT I +GK L + G R E L +
Sbjct: 83 VPAEFTVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAA 140
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 32.0 bits (72), Expect = 0.11
Identities = 3/41 (7%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 228 VFIKFFAPWCGHCKRLAP-TWEELGTKLLDNKHGIVIAKVD 267
+ + C + + L + + + I++ +
Sbjct: 47 LMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIML-NLM 86
Score = 31.6 bits (71), Expect = 0.17
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 101 FVKFYAPWCGHCQSLAPV 118
V + C + Q+L V
Sbjct: 48 MVIHHLEDCQYSQALKKV 65
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.35A {Bordetella parapertussis}
Length = 195
Score = 32.7 bits (74), Expect = 0.11
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDN 257
++FFA C HC + P E+ +
Sbjct: 28 EVLEFFAYTCPHCAAIEPMVEDWAKTAPQD 57
Score = 27.7 bits (61), Expect = 4.5
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFK 127
++F+A C HC ++ P+ ++ A
Sbjct: 30 LEFFAYTCPHCAAIEPMVEDWAKTAP 55
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 31.9 bits (73), Expect = 0.11
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 227 TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVI 263
TVF+ F A WC C+ P E K K +
Sbjct: 30 TVFLYFSASWCPPCRGFTPVLAEFYEKHHVAK-NFEV 65
Score = 30.7 bits (70), Expect = 0.32
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 31/98 (31%)
Query: 93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSI----------------AK 136
K V F+ F A WC C+ PV E ++ + K
Sbjct: 29 KTV-----FLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGK 83
Query: 137 IDCTQH--------RSICQSFDIKSYPTLLWI--ESGK 164
+ + ++F ++S PTL+ I ++G
Sbjct: 84 MPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGA 121
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA,
thioredoxin fold, redox- active center; 1.90A {Xylella
fastidiosa}
Length = 193
Score = 32.0 bits (72), Expect = 0.14
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKL 254
++ F C HC + G +
Sbjct: 28 EVVEIFGYTCPHCAHFDSKLQAWGARQ 54
Score = 27.8 bits (61), Expect = 3.9
Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 2/43 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
V+ + C HC Q + +DV +
Sbjct: 30 VEIFGYTCPHCAHFDSKLQAWGARQA--KDVRFTLVPAVFGGV 70
>1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide
oxidoreductase; 2.00A {Vibrio cholerae} SCOP: c.47.1.13
PDB: 2ijy_A
Length = 181
Score = 32.0 bits (72), Expect = 0.15
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 230 IKFFAPWCGHCKRLAPTWEELGTKLLDN 257
+FF+ +C HC P +L +L +
Sbjct: 23 SEFFSFYCPHCNTFEPIIAQLKQQLPEG 50
Score = 28.9 bits (64), Expect = 1.8
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFK 127
+F++ +C HC + P+ +L
Sbjct: 23 SEFFSFYCPHCNTFEPIIAQLKQQLP 48
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 31.5 bits (72), Expect = 0.15
Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 30/113 (26%)
Query: 227 TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIV--------IAKV------------ 266
V + F+A WC C+ P+ L + ++ V
Sbjct: 30 VVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLP 89
Query: 267 ---DCTQELSKDLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLE--ELYQFI 313
D + + K G G P +V ++GV + G+ + + E+ F+
Sbjct: 90 VLLDADKRVGKLY----GTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFL 138
Score = 26.9 bits (60), Expect = 6.4
Identities = 17/128 (13%), Positives = 35/128 (27%), Gaps = 31/128 (24%)
Query: 93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR--------- 143
+ V V F+A WC C+ P L + + + + +
Sbjct: 29 QVV-----IVNFWATWCPPCREEIPSMMRLNAAMA-GKPFRMLCVSIDEGGKVAVEEFFR 82
Query: 144 --------------SICQSFDIKSYPTLLWI-ESGKKLDKFQGSRTLETLVNYVSKMKGP 188
+ + + P I G L K G+ + ++ +
Sbjct: 83 KTGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWDHP-EVIAFLNNE 141
Query: 189 LNKKADSP 196
L+K +
Sbjct: 142 LSKAREGH 149
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 31.3 bits (71), Expect = 0.18
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 220 NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC 268
N+ +K + F A WC C+ P ++ ++L+D+ I V
Sbjct: 20 NEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSS 69
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Length = 167
Score = 31.5 bits (71), Expect = 0.21
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 9/92 (9%)
Query: 84 VELTEESFEKYVSLGN--HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
L E+ + + WC CQ + + ++ +A I +
Sbjct: 39 NGLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQ---RLQPNIELAIISKGR 95
Query: 142 HRSICQSF---DIKSYPTLLWI-ESGKKLDKF 169
+ + + P +L + E L +F
Sbjct: 96 AEDDLRQRLALERIAIPLVLVLDEEFNLLGRF 127
Score = 26.9 bits (59), Expect = 7.7
Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 6/66 (9%)
Query: 223 IKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGV 282
I+ + WC C+ + + I +A + + ++D Q
Sbjct: 52 IERRYRLLVAGEMWCPDCQINLAALD----FAQRLQPNIELAIIS--KGRAEDDLRQRLA 105
Query: 283 DGFPSI 288
+I
Sbjct: 106 LERIAI 111
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein,
redox-active center; HET: MES; 1.90A {Escherichia coli}
SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A
2iyj_A
Length = 216
Score = 31.4 bits (70), Expect = 0.27
Identities = 28/180 (15%), Positives = 53/180 (29%), Gaps = 46/180 (25%)
Query: 179 VNYVSK-----MKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFF 233
V Y++ ++GP+ N + + + + V F
Sbjct: 36 VLYITDDGKHIIQGPM-YDVSGTAPVNVTNKMLLKQLNALEKEMIVYKAPQEKHVITVFT 94
Query: 234 APWCGHCKRLAPTWEELGTK----------------------------------LLDNKH 259
CG+C +L + D
Sbjct: 95 DITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMA 154
Query: 260 GIVIAKVDCTQELSKD--LCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317
G +A C +++ L Q GV G P++ V NG G + +E+ +F+ +H+
Sbjct: 155 GKSVAPASCDVDIADHYALGVQLGVSGTPAV-VLSNGTL---VPGYQPPKEMKEFLDEHQ 210
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
thiol-disulfide oxidoreduct TLPA-like family, PSI-2;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 30.8 bits (70), Expect = 0.28
Identities = 8/64 (12%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 84 VELTEESFE-KYVSLGNHFVKFYAPWCGHCQSLA--PVWQELASHFKTEEDVSIAKIDCT 140
+ + ++F+ K + + F+A W +E+ +K + + + I
Sbjct: 24 ITRSSDAFKQKSL-----LINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLD 78
Query: 141 QHRS 144
+
Sbjct: 79 VDKQ 82
Score = 30.0 bits (68), Expect = 0.57
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 212 VSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLA--PTWEELGTKLLDNKHGIVIAKVDCT 269
++ +S+ F K ++ I F+A W + E+ K NK I + +
Sbjct: 24 ITRSSDAF----KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNK-YIGMLGISLD 78
Query: 270 QELSK 274
+ +
Sbjct: 79 VDKQQ 83
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold,
DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis
serogroup B} PDB: 3dvx_A
Length = 195
Score = 31.4 bits (70), Expect = 0.30
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKH 259
++FF +C HC P +LG L + +
Sbjct: 27 LEFFGYFCVHCHHFDPLLLKLGKALPSDAY 56
Score = 27.9 bits (61), Expect = 3.3
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDV 132
++F+ +C HC P+ +L ++ +
Sbjct: 27 LEFFGYFCVHCHHFDPLLLKLGKALPSDAYL 57
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 30.4 bits (69), Expect = 0.42
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVI 263
V + F+ C C++ P + D G I
Sbjct: 32 VLVDFWFAGCSWCRKETPYLLKTYNAFKDK--GFTI 65
Score = 28.8 bits (65), Expect = 1.5
Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 33/121 (27%)
Query: 93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR--------- 143
KYV V F+ C C+ P + + FK ++ +I + +
Sbjct: 30 KYV-----LVDFWFAGCSWCRKETPYLLKTYNAFK-DKGFTIYGVSTDRREEDWKKAIEE 83
Query: 144 ----------------SICQSFDIKSYPTLLWI-ESGKKLDKF-QGSRTLETLVNYVSKM 185
+ +S+ I +P ++ + GK + K +G T+ +V+
Sbjct: 84 DKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKELRGDDLYNTVEKFVNGA 143
Query: 186 K 186
K
Sbjct: 144 K 144
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase,
disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB:
3dvw_A 3a3t_A
Length = 193
Score = 30.5 bits (68), Expect = 0.44
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 230 IKFFAPWCGHCKRLAPTWEELGTKLLDN 257
++FF +C HC L P + D+
Sbjct: 29 LEFFGYFCPHCAHLEPVLSKHAKSFKDD 56
Score = 28.6 bits (63), Expect = 2.1
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
++F+ +C HC L PV + A FK +D+ + +
Sbjct: 29 LEFFGYFCPHCAHLEPVLSKHAKSFK--DDMYLRTEHVVWQKE 69
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide
isomerase, struc genomics, PSI-2, protein structure
initiative; 1.85A {Nitrosomonas europaea}
Length = 216
Score = 30.7 bits (69), Expect = 0.52
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 262 VIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
+ + G+ GFP++ V R G R +E L Q +
Sbjct: 158 AKQRTLAGFQRVAQW----GISGFPALVVESGTDRYLITTGYRPIEALRQLL 205
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter DSS, structural genomics,
PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 30.1 bits (68), Expect = 0.52
Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 228 VFIKFFAPWCGHC-KRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
+ I+ F C C P +++ ++ + + + E
Sbjct: 31 IVIEAFQMLCPGCVMHGIPLAQKVRAAFPED--KVAVLGLHTVFE 73
Score = 27.8 bits (62), Expect = 3.5
Identities = 13/119 (10%), Positives = 34/119 (28%), Gaps = 34/119 (28%)
Query: 101 FVKFYAPWCGHC-QSLAPVWQELASHFK--------------TEEDVSIAKI-------- 137
++ + C C P+ Q++ + F E ++ +
Sbjct: 32 VIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYR 91
Query: 138 ----------DCTQHRSICQSFDIKSYPTLLWI-ESGKKLDKFQGSRTLETLVNYVSKM 185
++ ++ P+LL I ++G G + L ++ +
Sbjct: 92 IKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATL 150
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5,
subtype, thermophilic, thermophIle, endoglucanase; 1.12A
{Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A
Length = 305
Score = 30.7 bits (69), Expect = 0.52
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 94 YVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDV 132
Y + H + ++Y W+ +AS F + V
Sbjct: 87 YAVVDPHNYGRYYNSIISSPSDFETFWKTVASQFASNPLV 126
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond,
redox-active center, transcription regulator; HET: MSE
GOL; 1.50A {Pseudomonas aeruginosa PAO1}
Length = 192
Score = 30.5 bits (68), Expect = 0.56
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEEL 250
++ F C HC PT
Sbjct: 28 EVVELFWYGCPHCYAFEPTIVPW 50
Score = 26.7 bits (58), Expect = 9.3
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKT 128
V+ + C HC + P +
Sbjct: 30 VELFWYGCPHCYAFEPTIVPWSEKLPA 56
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.72
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 15/37 (40%)
Query: 88 EESFEKY-VSLGNHFVKFYAPWCGHCQSLAPVWQELA 123
+++ +K SL K YA S AP LA
Sbjct: 19 KQALKKLQASL-----KLYAD-----DS-APA---LA 41
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal
thioredoxin-like domain, N-terminal beta-sheet,
fingerprint rigion, oxidoreductase; 1.90A {Escherichia
coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Length = 168
Score = 29.6 bits (67), Expect = 0.75
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 13/64 (20%)
Query: 207 KPEPVVSLTSENFNDVIKSGTVFIK-------FFAPWCGHCKRLAPTWEELGTKLLDNKH 259
KP P L S + V + +A WC C+ +L +
Sbjct: 26 KPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQL------SAQ 79
Query: 260 GIVI 263
GI +
Sbjct: 80 GIRV 83
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase
subunit OST6; oxidoreductase, active site loop, redox
state, membrane; HET: PG4; 1.30A {Saccharomyces
cerevisiae} PDB: 3g7y_A 3g9b_A*
Length = 178
Score = 30.0 bits (67), Expect = 0.76
Identities = 9/92 (9%), Positives = 30/92 (32%), Gaps = 13/92 (14%)
Query: 80 NEGLVELTEESFEKYVSLG-NHFV---------KFYAPWCGHCQSLAPVWQELASHFKT- 128
+ G++ +T +++ +F C C + +A ++
Sbjct: 17 DTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQ 76
Query: 129 --EEDVSIAKIDCTQHRSICQSFDIKSYPTLL 158
+ +D + + + +++ P L+
Sbjct: 77 APQSLNLFFTVDVNEVPQLVKDLKLQNVPHLV 108
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics,
PSI-2, protein ST initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.76A {Vibrio
fischeri}
Length = 185
Score = 29.6 bits (65), Expect = 0.95
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 230 IKFFAPWCGHCKRLAPTWEELGTKL 254
+ FA CGHC+ + + +
Sbjct: 27 TEVFALSCGHCRNMENFLPVISQEA 51
Score = 26.9 bits (58), Expect = 8.3
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 15/55 (27%)
Query: 75 DKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTE 129
+ N+G+ +TE +A CGHC+++ ++ T+
Sbjct: 15 STSLENDGMAPVTE---------------VFALSCGHCRNMENFLPVISQEAGTD 54
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural
genomics, midwest CE structural genomics; HET: MSE;
2.20A {Corynebacterium glutamicum}
Length = 160
Score = 29.4 bits (66), Expect = 1.1
Identities = 15/118 (12%), Positives = 29/118 (24%), Gaps = 32/118 (27%)
Query: 228 VFIKFFAPWCGHCKR-----LAPTWEELGTKLLD-----------------------NKH 259
V ++ F C C + + ++
Sbjct: 33 VVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEF 92
Query: 260 GI---VIAKVDCTQELSKDLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFI 313
GI V + + + ++G PSI + + G G D L +
Sbjct: 93 GIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLL 150
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA,
thiol-disulfide oxidoreductase, DISU bond, redox-active
center; 1.58A {Salmonella enterica subsp} PDB: 1a23_A
1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A
1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A*
3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Length = 191
Score = 29.5 bits (65), Expect = 1.1
Identities = 7/41 (17%), Positives = 13/41 (31%)
Query: 230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
++FF+ +C HC + G + K
Sbjct: 26 LEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVEF 66
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin;
thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase,
ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella
enterica subsp}
Length = 189
Score = 29.2 bits (64), Expect = 1.2
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVD 267
++FF+ +C C + T G + K
Sbjct: 17 AVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYH 56
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide
oxidoreductase, oxidoreductase, protein disulfide
isomerase, protein folding, thioredoxin; 2.4A
{Escherichia coli} SCOP: c.47.1.13
Length = 197
Score = 29.4 bits (65), Expect = 1.3
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
++FF+ +C HC + G+ + K
Sbjct: 118 LEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKY 154
Score = 27.8 bits (61), Expect = 4.2
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKT-EEDVSIAKI 137
++F++ +C HC V + K E V + K
Sbjct: 118 LEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKY 154
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide
exchange, cell inner membrane, CYT C-type biogenesis,
disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB:
3kh9_A
Length = 176
Score = 28.4 bits (64), Expect = 1.9
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 12/63 (19%)
Query: 207 KPEPVVSLTS-----ENFNDVIKSGTVF-IKFFAPWCGHCKRLAPTWEELGTKLLDNKHG 260
KP P L S + G + + WC C+ P L + G
Sbjct: 34 KPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRL------AEQG 87
Query: 261 IVI 263
+VI
Sbjct: 88 VVI 90
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi
DSS-3, thioredoxin-like, oxidoreductase, structural
genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Length = 175
Score = 28.5 bits (64), Expect = 1.9
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEEL 250
++FF C +C+R + L
Sbjct: 25 TVVEFFDYNCPYCRRAMAEVQGL 47
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 28.7 bits (64), Expect = 3.3
Identities = 9/48 (18%), Positives = 12/48 (25%)
Query: 57 TLTNFINEQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKF 104
TLTN E+ P P D + + V
Sbjct: 392 TLTNLDGEKTLSLPYWPHDVVRDSPDGLVGMPGGGRVAPEEAVRDVPL 439
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron
transport, redox-active center, transport; HET: MES;
2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Length = 118
Score = 26.9 bits (60), Expect = 4.6
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 11/49 (22%)
Query: 220 NDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTK-LLDNKHGIVIAKVD 267
D+I +F+ +C +C L K + +KV
Sbjct: 19 KDLIAENEIFV-ASKTYCPYCHA---------ALNTLFEKLKVPRSKVL 57
>3f9u_A Putative exported cytochrome C biogenesis-related; exported
cytochrome C biogenesis-related protein, bacteroide
fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 26.9 bits (59), Expect = 5.9
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 228 VFIKFFAPWCGHCKRL 243
V + F C +C+++
Sbjct: 50 VMLDFTGYGCVNCRKM 65
Score = 26.9 bits (59), Expect = 6.3
Identities = 12/99 (12%), Positives = 24/99 (24%), Gaps = 28/99 (28%)
Query: 101 FVKFYAPWCGHCQSL-------APVWQELASHF--------KTEEDVSIAKIDCTQHRSI 145
+ F C +C+ + V + + + KI
Sbjct: 51 MLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERT 110
Query: 146 CQS------------FDIKSYPTLLWI-ESGKKLDKFQG 171
++ F + P + I G L+K
Sbjct: 111 LRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYA 149
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein,
periplasm, redox-active center, oxidoreductase; HET:
PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Length = 195
Score = 27.2 bits (59), Expect = 6.3
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 230 IKFFAPWCGHCKRLAPTWEELGTKLLDNK 258
IK F+ C C + ++ + +
Sbjct: 22 IKVFSYACPFCYKYDKAVTGPVSEKVKDI 50
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A
{Helicobacter pylori} PDB: 2rd3_A
Length = 221
Score = 27.0 bits (59), Expect = 7.8
Identities = 9/68 (13%), Positives = 18/68 (26%), Gaps = 2/68 (2%)
Query: 85 ELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
L + F Y+ ++ YA A + + I + + H
Sbjct: 35 TLERDKFRFYIIQDYLYLLEYAKVFALGVVKACDEAVMR--EFSNAIQDILNNEMSIHNH 92
Query: 145 ICQSFDIK 152
+ I
Sbjct: 93 YIRELQIT 100
>2x5h_A ORF 131; viral protein; 1.80A {Sulfolobus islandicus rudivirus 1}
PDB: 2x5g_A* 2x5t_A
Length = 97
Score = 25.5 bits (55), Expect = 9.7
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 48 KFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKF 104
K R + + + NF +QI TP++ D ++L E EKY N +VKF
Sbjct: 47 KIRYSMTIHSQNNF-RKQIGITPQDAED--------LKLIAEFLEKYSDFLNEYVKF 94
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.400
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,773,131
Number of extensions: 273495
Number of successful extensions: 1285
Number of sequences better than 10.0: 1
Number of HSP's gapped: 917
Number of HSP's successfully gapped: 435
Length of query: 324
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 230
Effective length of database: 4,077,219
Effective search space: 937760370
Effective search space used: 937760370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (25.8 bits)