BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14089
(333 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242007236|ref|XP_002424448.1| mediator complex subunit, putative [Pediculus humanus corporis]
gi|212507848|gb|EEB11710.1| mediator complex subunit, putative [Pediculus humanus corporis]
Length = 255
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 124/247 (50%), Positives = 160/247 (64%), Gaps = 35/247 (14%)
Query: 104 MSSKNISTGEKLLSLIDDIELVAK-----------KKQEAHNHLQKTVVYFNKNEVVKQS 152
M+S N+ST +KLLSLIDD+EL+AK +K + H Q T + K++ +K++
Sbjct: 1 MASGNVSTRDKLLSLIDDMELIAKELIENTITLRHQKMSSAEHFQLTELLVMKDKEIKET 60
Query: 153 FRI-EIEEFTKKSKNASTAGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKAN 207
+ + +K A E + + + ATAIFQAKQKL SI KAN
Sbjct: 61 LALGRRQALVEKKMETLKAEVERHDQEIRNLQRQLKEGEQILATAIFQAKQKLASIAKAN 120
Query: 208 KRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHL 267
KRPV SEELIK+AHRIS+SNAVCAPLTWQ GDPRRPYPTDIEMR+GFLGRL+D PLNGHL
Sbjct: 121 KRPVLSEELIKFAHRISASNAVCAPLTWQQGDPRRPYPTDIEMRLGFLGRLSDLPLNGHL 180
Query: 268 LPQQSLGDLHRT--------PSELSQQNQFSWH-SGDMHI-----GNVPLDRQQQNSNRE 313
L QQ+L D HRT P+ SQ NQF+WH SG++H+ G+V +D + +++E
Sbjct: 181 LQQQNLSDFHRTGHSAGGEPPA--SQSNQFAWHPSGEIHMSVGNQGSVAMDTR---NHKE 235
Query: 314 SEDVEVM 320
+EDVEVM
Sbjct: 236 AEDVEVM 242
>gi|91077876|ref|XP_972781.1| PREDICTED: similar to AGAP004063-PA [Tribolium castaneum]
Length = 253
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 125/243 (51%), Positives = 164/243 (67%), Gaps = 29/243 (11%)
Query: 104 MSSKNISTGEKLLSLIDDIELVAKKKQE---AHNHL--------QKTVVYFNKNEVVKQS 152
MSS+ +ST EKLL ++DDIEL++K+ E A HL Q T + KN + ++
Sbjct: 1 MSSQ-MSTKEKLLYILDDIELISKEIIENSIAPKHLKLSGPEYAQLTELLVAKNTELTET 59
Query: 153 FRIEIEEF-TKKSKNASTAGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKAN 207
++ E+ K + A E D + + + + + ATAI+QA QKLQSI++AN
Sbjct: 60 LKLAAEQAQIDKKMDILKAEVERQDNDINNLQKQLKEAEQILATAIYQANQKLQSISRAN 119
Query: 208 KRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHL 267
KRPVSSEELIK+AHRIS+SNA+CAPLTWQ GDPRRPYPTDIEMR+G LGRL P+NGHL
Sbjct: 120 KRPVSSEELIKFAHRISASNAICAPLTWQQGDPRRPYPTDIEMRLGLLGRLMSDPINGHL 179
Query: 268 LPQQ-SLGDLHRT--PSEL--SQQNQFSWH-SGDMHI----GNVPLDRQQQNSNRESEDV 317
L QQ SL DLHR P E+ +QQNQF+WH SG++H+ G+VP+D +N +E+EDV
Sbjct: 180 LQQQNSLSDLHRQGHPGEIPAAQQNQFAWHPSGEIHMSVGQGSVPMDT--RNHKQETEDV 237
Query: 318 EVM 320
EVM
Sbjct: 238 EVM 240
>gi|270002269|gb|EEZ98716.1| hypothetical protein TcasGA2_TC001257 [Tribolium castaneum]
Length = 249
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 122/238 (51%), Positives = 160/238 (67%), Gaps = 28/238 (11%)
Query: 109 ISTGEKLLSLIDDIELVAKKKQE---AHNHL--------QKTVVYFNKNEVVKQSFRIEI 157
+ST EKLL ++DDIEL++K+ E A HL Q T + KN + ++ ++
Sbjct: 1 MSTKEKLLYILDDIELISKEIIENSIAPKHLKLSGPEYAQLTELLVAKNTELTETLKLAA 60
Query: 158 EEF-TKKSKNASTAGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
E+ K + A E D + + + + + ATAI+QA QKLQSI++ANKRPVS
Sbjct: 61 EQAQIDKKMDILKAEVERQDNDINNLQKQLKEAEQILATAIYQANQKLQSISRANKRPVS 120
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQ- 271
SEELIK+AHRIS+SNA+CAPLTWQ GDPRRPYPTDIEMR+G LGRL P+NGHLL QQ
Sbjct: 121 SEELIKFAHRISASNAICAPLTWQQGDPRRPYPTDIEMRLGLLGRLMSDPINGHLLQQQN 180
Query: 272 SLGDLHRT--PSEL--SQQNQFSWH-SGDMHI----GNVPLDRQQQNSNRESEDVEVM 320
SL DLHR P E+ +QQNQF+WH SG++H+ G+VP+D +N +E+EDVEVM
Sbjct: 181 SLSDLHRQGHPGEIPAAQQNQFAWHPSGEIHMSVGQGSVPMDT--RNHKQETEDVEVM 236
>gi|239789323|dbj|BAH71292.1| ACYPI008468 [Acyrthosiphon pisum]
Length = 251
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 118/239 (49%), Positives = 154/239 (64%), Gaps = 26/239 (10%)
Query: 106 SKNISTGEKLLSLIDDIELVAKKKQE------------AHNHLQKTVVYFNKNEVVKQSF 153
S N ST +KLL L+DD EL++++ E H L + NE+ K +
Sbjct: 2 SANTSTRDKLLGLLDDFELLSRELIENLSAGRQQKINVQHQLLLTEQLVATDNEI-KATL 60
Query: 154 RI-EIEEFTKKSKNASTAGFE--DAHGVWESASGSNKNE---ATAIFQAKQKLQSINKAN 207
++ E + +K NA E D H + + + E ATA+FQAKQKLQSINKA+
Sbjct: 61 KVAEHQAEVEKKVNAIKEEIETQDQH-ITQMQKHFKEAENILATALFQAKQKLQSINKAS 119
Query: 208 KRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHL 267
K PVSSE+LIKYAHRIS+SNAVCAPLTWQPGD RRPYPTDIEMR+G+LGRL+D PLNGH+
Sbjct: 120 KHPVSSEDLIKYAHRISASNAVCAPLTWQPGDARRPYPTDIEMRMGYLGRLSDLPLNGHI 179
Query: 268 LPQQSLGDLHRTPSEL----SQQNQFSWHS-GDMHIG-NVPLDRQQQNSNRESEDVEVM 320
+ Q L D+ R+ +++ SQQNQF+WHS GDMH+G + + +S +EDVEVM
Sbjct: 180 MQPQGLADIVRSNNQIDRQASQQNQFAWHSTGDMHLGVGSGVIDTRNHSKDVAEDVEVM 238
>gi|193620211|ref|XP_001950035.1| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Acyrthosiphon pisum]
Length = 251
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 118/239 (49%), Positives = 154/239 (64%), Gaps = 26/239 (10%)
Query: 106 SKNISTGEKLLSLIDDIELVAKKKQE------------AHNHLQKTVVYFNKNEVVKQSF 153
S N ST +KLL L+DD EL++++ E H L + NE+ K +
Sbjct: 2 SANTSTRDKLLGLLDDFELLSRELIENLSAGRQQKINVQHQLLLTEQLVATDNEI-KATL 60
Query: 154 RI-EIEEFTKKSKNASTAGFE--DAHGVWESASGSNKNE---ATAIFQAKQKLQSINKAN 207
++ E + +K NA E D H + + + E ATA+FQAKQKLQSINKA+
Sbjct: 61 KVAEHQAEVEKKVNAIKEEIETQDQH-ITQMQKHFKEAENILATALFQAKQKLQSINKAS 119
Query: 208 KRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHL 267
K PVSSE+LIKYAHRIS+SNAVCAPLTWQPGD RRPYPTDIEMR+G+LGRL+D PLNGH+
Sbjct: 120 KHPVSSEDLIKYAHRISASNAVCAPLTWQPGDARRPYPTDIEMRMGYLGRLSDLPLNGHI 179
Query: 268 LPQQSLGDLHRTPSEL----SQQNQFSWHS-GDMHIG-NVPLDRQQQNSNRESEDVEVM 320
+ Q L D+ R+ +++ SQQNQF+WHS GDMH+G + + +S +EDVEVM
Sbjct: 180 MQPQGLADIVRSNNQIDRQASQQNQFAWHSTGDMHLGVGSGVIDTRNHSKDVAEDVEVM 238
>gi|322786080|gb|EFZ12691.1| hypothetical protein SINV_11521 [Solenopsis invicta]
Length = 254
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 149/240 (62%), Gaps = 33/240 (13%)
Query: 110 STGEKLLSLIDDIELVAKK-----------KQEAHNHLQKTVVYFNKNEVVKQSFRIEIE 158
ST E LLSL+DDIEL+AK+ K + H Q T + K+ K + + E
Sbjct: 6 STREVLLSLVDDIELIAKEMIENTIAQKPSKLSSTEHAQLTELLVAKDNEFKATLKRAAE 65
Query: 159 EFTKKSK-NASTAGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
+ K A A E D + + + ATAI+QAKQKLQSI +ANKRPVSS
Sbjct: 66 QAKINLKMEALRAEVERQDQDIQQLQRQLKEAEQILATAIYQAKQKLQSIARANKRPVSS 125
Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQS- 272
EELIKYAHRIS++NA+CAPLTWQ GDPRRPYPTDIEMR+G+LGRL+D PLNG LL
Sbjct: 126 EELIKYAHRISATNAICAPLTWQQGDPRRPYPTDIEMRLGYLGRLSDLPLNGQLLGSHPG 185
Query: 273 -LGDLHRT--PS---ELSQQNQFSWH-SGDMHI-----GNVPLDRQQQNSNRESEDVEVM 320
DLHR P+ +SQ NQF+WH SG++H+ G+V ++ +Q E+EDVEVM
Sbjct: 186 IPSDLHRAGHPAGEPPVSQSNQFAWHPSGEIHMSVGGQGSVAVNTHKQ----ETEDVEVM 241
>gi|307177760|gb|EFN66757.1| Mediator of RNA polymerase II transcription subunit 4 [Camponotus
floridanus]
Length = 254
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 116/240 (48%), Positives = 149/240 (62%), Gaps = 33/240 (13%)
Query: 110 STGEKLLSLIDDIELVAKK-----------KQEAHNHLQKTVVYFNKNEVVKQSFRIEIE 158
ST E LLSL+DDIEL+AK+ K + H Q T + K+ +K + + E
Sbjct: 6 STREVLLSLVDDIELIAKEMIENTIAQKPSKLSSTEHTQLTELLVAKDNELKATLKRAAE 65
Query: 159 EFTKKSK-NASTAGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
+ K A A E D + + + ATAI+QAKQKLQSI +ANKRPV S
Sbjct: 66 QAKINLKMEALKAEVERQDQDIQQLQRQLKEAEQILATAIYQAKQKLQSIARANKRPVPS 125
Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQS- 272
EELIKYAHRIS++NA+CAPLTWQ GDPRRPYPTDIEMR+G+LGRL+D PLNG L+
Sbjct: 126 EELIKYAHRISATNAICAPLTWQQGDPRRPYPTDIEMRLGYLGRLSDLPLNGQLIGSHPG 185
Query: 273 -LGDLHRT--PS---ELSQQNQFSWH-SGDMHI-----GNVPLDRQQQNSNRESEDVEVM 320
DLHR P+ +SQ NQF+WH SG++H+ G+V ++ +Q E+EDVEVM
Sbjct: 186 IPSDLHRAGHPAGEPPVSQSNQFAWHPSGEIHMSVSGQGSVAVNTHKQ----ETEDVEVM 241
>gi|340712453|ref|XP_003394774.1| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Bombus terrestris]
Length = 255
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 118/247 (47%), Positives = 150/247 (60%), Gaps = 35/247 (14%)
Query: 104 MSSKNISTGEKLLSLIDDIELVAKK-----------KQEAHNHLQKTVVYFNKNEVVKQS 152
M+S + ST E LLS++DDIEL+AK+ K H Q T + K+ +K
Sbjct: 1 MTSTSKSTKEVLLSIVDDIELIAKEMIENTIVQKPLKLSNEEHSQLTELLIAKDNELKAI 60
Query: 153 FRIEIEEFTKKSK-NASTAGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKAN 207
+ E+ K A A E D + + + ATAI+QAKQKLQSI +AN
Sbjct: 61 LKRAAEQAKINLKMEALKAEVERQDQDIQQLQRQLKEAEQILATAIYQAKQKLQSIARAN 120
Query: 208 KRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHL 267
KRPV SEELIKYAHRIS+SNA+CAPLTWQ GDPRRPYPTDIEMR+G+LGRL+D PLNG
Sbjct: 121 KRPVPSEELIKYAHRISASNAICAPLTWQQGDPRRPYPTDIEMRLGYLGRLSDLPLNGQ- 179
Query: 268 LPQQSLG---DLHRT-----PSELSQQNQFSWH-SGDMHI-----GNVPLDRQQQNSNRE 313
+P G DLHR +SQ NQF+WH SG++H+ G+V ++ +Q E
Sbjct: 180 MPGTHPGISSDLHRPGHPVGEPPMSQANQFAWHSSGEIHMSVSGQGSVAMNTHKQ----E 235
Query: 314 SEDVEVM 320
+EDVEVM
Sbjct: 236 TEDVEVM 242
>gi|307214805|gb|EFN89692.1| Mediator of RNA polymerase II transcription subunit 4 [Harpegnathos
saltator]
Length = 254
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 117/240 (48%), Positives = 148/240 (61%), Gaps = 33/240 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQEAH-----------NHLQKTVVYFNKNEVVKQSFRIEIE 158
ST E LLSLIDDIEL+AK+ E H Q T + K+ +K + + E
Sbjct: 6 STKEVLLSLIDDIELIAKEMIENTIAQKPAKLSNIEHAQLTELLVAKDNELKSTLKRAAE 65
Query: 159 EFTKKSK-NASTAGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
+ K A A E D + + + ATAI+QAKQKLQSI +ANKRPV+S
Sbjct: 66 QAKINLKMEALKAEVERQDQDIQQLQRQLKEAEQILATAIYQAKQKLQSIARANKRPVAS 125
Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQS- 272
EELIKYAHRIS++NA+CAPL+WQ GDPRRPYPTDIEMR+G LGRLND PLNG +L
Sbjct: 126 EELIKYAHRISATNAICAPLSWQQGDPRRPYPTDIEMRLGCLGRLNDVPLNGQMLGSHPS 185
Query: 273 -LGDLHRT--PS---ELSQQNQFSWH-SGDMHI-----GNVPLDRQQQNSNRESEDVEVM 320
DLHR P+ +SQ NQF+WH SG++H+ G+V ++ +Q E+EDVEVM
Sbjct: 186 IPSDLHRAGHPAGEPPVSQSNQFAWHPSGEIHMSVGGQGSVAVNTHKQ----ETEDVEVM 241
>gi|350399776|ref|XP_003485635.1| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Bombus impatiens]
Length = 255
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 118/247 (47%), Positives = 150/247 (60%), Gaps = 35/247 (14%)
Query: 104 MSSKNISTGEKLLSLIDDIELVAKK-----------KQEAHNHLQKTVVYFNKNEVVKQS 152
M+S + ST E LLS++DDIEL+AK+ K H Q T + K+ +K
Sbjct: 1 MTSTSKSTKEVLLSIVDDIELIAKEMIENTIVQKPLKLSNEEHSQLTELLIAKDNELKAI 60
Query: 153 FRIEIEEFTKKSK-NASTAGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKAN 207
+ E+ K A A E D + + + ATAI+QAKQKLQSI +AN
Sbjct: 61 LKRAAEQAKINLKMEALKAEVERQDQDIQQLQRQLKEAEQILATAIYQAKQKLQSIARAN 120
Query: 208 KRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHL 267
KRPV SEELIKYAHRIS+SNA+CAPLTWQ GDPRRPYPTDIEMR+G+LGRL+D PLNG
Sbjct: 121 KRPVPSEELIKYAHRISASNAICAPLTWQQGDPRRPYPTDIEMRLGYLGRLSDLPLNGQ- 179
Query: 268 LPQQSLG---DLHRT-----PSELSQQNQFSWH-SGDMHI-----GNVPLDRQQQNSNRE 313
+P G DLHR +SQ NQF+WH SG++H+ G+V ++ +Q E
Sbjct: 180 MPGTHPGISSDLHRPGHPVGEPPVSQANQFAWHSSGEIHMSVSGQGSVAMNTHKQ----E 235
Query: 314 SEDVEVM 320
+EDVEVM
Sbjct: 236 TEDVEVM 242
>gi|383865876|ref|XP_003708398.1| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Megachile rotundata]
Length = 254
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 149/241 (61%), Gaps = 35/241 (14%)
Query: 110 STGEKLLSLIDDIELVAKK-----------KQEAHNHLQKTVVYFNKNEVVKQSFRIEIE 158
ST E LLSL+DDIEL+AK+ K + H + T + K+ +K + + E
Sbjct: 6 STREILLSLVDDIELIAKEMIENTIAQKPMKLSSEEHARLTELLIAKDNELKATLKRAAE 65
Query: 159 EFTKKSK-NASTAGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
+ K A A E D + + + ATAI+QAKQKLQSI +ANK+PV S
Sbjct: 66 QAKINLKMEALRAEVERQDQDIQQLQRQLKEAEQILATAIYQAKQKLQSIARANKKPVPS 125
Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLL---PQ 270
EELIKYAHRIS+SNA+CAPLTWQ GDPRRPYPTDIEMR+G+LGRL+D PLNG +L P
Sbjct: 126 EELIKYAHRISASNAICAPLTWQQGDPRRPYPTDIEMRLGYLGRLSDLPLNGQMLGTHPG 185
Query: 271 QSLGDLHRT-----PSELSQQNQFSWH-SGDMHI-----GNVPLDRQQQNSNRESEDVEV 319
S DLHR +SQ NQF+WH SG++H+ G+V ++ +Q E+EDVEV
Sbjct: 186 IS-SDLHRAGHPVGEPPVSQANQFAWHPSGEIHMSVSGQGSVAMNTHKQ----ETEDVEV 240
Query: 320 M 320
M
Sbjct: 241 M 241
>gi|332025478|gb|EGI65642.1| Mediator of RNA polymerase II transcription subunit 4 [Acromyrmex
echinatior]
Length = 257
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 120/244 (49%), Positives = 151/244 (61%), Gaps = 38/244 (15%)
Query: 110 STGEKLLSLIDDIELVAKK-----------KQEAHNHLQKTVVYFNKNEVVKQSFRIEIE 158
ST E LLSL+DDIEL+AK+ K + H Q T + K+ +K + + E
Sbjct: 6 STREVLLSLVDDIELIAKEMIENTIAQKPSKLSSTEHAQLTELLVAKDNELKATLKRAAE 65
Query: 159 EFTKKSK-NASTAGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
+ K A A E D + + + ATAI+QAKQKLQSI +ANKRPV S
Sbjct: 66 QAKINLKMEALKAEVERQDQDIQQLQRQLKEAEQILATAIYQAKQKLQSIARANKRPVPS 125
Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDS---PLNGHLLPQ 270
EELIKYAHRIS++NA+CAPLTWQ GDPRRPYPTD+EMRVGFLGRL+D PLNG LL
Sbjct: 126 EELIKYAHRISATNAICAPLTWQQGDPRRPYPTDLEMRVGFLGRLSDPSNLPLNGQLLGS 185
Query: 271 QSLG---DLHRT--PS---ELSQQNQFSWH-SGDMHI-----GNVPLDRQQQNSNRESED 316
LG DLHR P+ +SQ NQF+WH SG++H+ G+V ++ +Q E+ED
Sbjct: 186 H-LGVPTDLHRAGHPAGEPPVSQSNQFAWHPSGEIHMSVGGQGSVAVNTHKQ----ETED 240
Query: 317 VEVM 320
VEVM
Sbjct: 241 VEVM 244
>gi|380011691|ref|XP_003689931.1| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Apis florea]
Length = 255
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 116/243 (47%), Positives = 147/243 (60%), Gaps = 27/243 (11%)
Query: 104 MSSKNISTGEKLLSLIDDIELVAKK-----------KQEAHNHLQKTVVYFNKNEVVKQS 152
M+S ST E LLS++DDIEL+AK+ K + Q T + K+ +K
Sbjct: 1 MASSGKSTREVLLSIVDDIELIAKEMIENTIAQKPLKLSNEEYAQLTELLIAKDNELKTI 60
Query: 153 FRIEIEEFTKKSK-NASTAGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKAN 207
+ E+ K A A E D + + + ATAI+QAKQKLQSI +AN
Sbjct: 61 LKRAAEQAKINLKMEALKAEVERQDQDIQQLQRQLKEAEQILATAIYQAKQKLQSIARAN 120
Query: 208 KRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHL 267
KRPVSSEELIKYAHRIS+SNA+CAPLTWQ GDPRRPYPTDIEMR+G+LGRL+D PLNG
Sbjct: 121 KRPVSSEELIKYAHRISASNAICAPLTWQQGDPRRPYPTDIEMRLGYLGRLSDLPLNGQ- 179
Query: 268 LPQQSLG---DLHRTPSEL-----SQQNQFSWH-SGDMHIGNVPLDRQQQNSNR-ESEDV 317
+P G DLHR + SQ NQF+WH SG++H+ N+++ E+EDV
Sbjct: 180 MPGTHPGLSSDLHRAGHPVGEPPASQANQFAWHSSGEIHMSMSGQGSGVMNTHKQETEDV 239
Query: 318 EVM 320
EVM
Sbjct: 240 EVM 242
>gi|156541764|ref|XP_001599560.1| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Nasonia vitripennis]
Length = 251
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/242 (45%), Positives = 152/242 (62%), Gaps = 32/242 (13%)
Query: 106 SKNISTGEKLLSLIDDIELVAKKKQE---AHNHLQKTV--------VYFNKNEVVKQSFR 154
S N ST + LLS+IDDIE+++K+ E A HL+ + + +K++ +K S
Sbjct: 2 SVNKSTCDVLLSVIDDIEIISKELIENIIAQKHLKLSTAEHTSLIELLVSKDKELK-SIL 60
Query: 155 IEIEEFTKKSKNASTAGFE------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANK 208
++ +E K + E D + + + ATAI+QAKQKLQSI +ANK
Sbjct: 61 VKADEQAKINLKMEALKAEVDRQDQDIQQLQRQLKEAEQILATAIYQAKQKLQSIARANK 120
Query: 209 RPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLL 268
RPV SEEL+K+AHRIS+SNA+CAPLTWQ GDPRRPYPTDIEMR+G LGRL+D PLNG ++
Sbjct: 121 RPVPSEELVKFAHRISASNAICAPLTWQQGDPRRPYPTDIEMRLGCLGRLSDLPLNGQMV 180
Query: 269 -PQQSLGDLHRTPSELSQQ--NQFSWH-SGDMHI------GNVPLDRQQQNSNRESEDVE 318
P + D +R L+ Q +QF+WH SG++H+ G VP++ +Q E+EDVE
Sbjct: 181 GPHAGISDFNRPTESLAAQASSQFAWHPSGEIHMSVNAGQGTVPINTHKQ----ETEDVE 236
Query: 319 VM 320
VM
Sbjct: 237 VM 238
>gi|66506325|ref|XP_396963.2| PREDICTED: mediator of RNA polymerase II transcription subunit 4
[Apis mellifera]
Length = 255
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/243 (47%), Positives = 146/243 (60%), Gaps = 27/243 (11%)
Query: 104 MSSKNISTGEKLLSLIDDIELVAKK-----------KQEAHNHLQKTVVYFNKNEVVKQS 152
M+S ST E LLS++DDIEL+AK+ K + Q T + K+ +K
Sbjct: 1 MASSGKSTREVLLSIVDDIELIAKEMIENTIAQKPLKLSNEEYAQLTELLIAKDNELKTI 60
Query: 153 FRIEIEEFTKKSK-NASTAGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKAN 207
+ E+ K A A E D + + + ATAI+QAKQKLQSI +AN
Sbjct: 61 LKRAAEQAKINLKMEALKAEVERQDQDIQQLQRQLKEAEQILATAIYQAKQKLQSIARAN 120
Query: 208 KRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHL 267
KRPV SEELIKYAHRIS+SNA+CAPLTWQ GDPRRPYPTDIEMR+G+LGRL+D PLNG
Sbjct: 121 KRPVPSEELIKYAHRISASNAICAPLTWQQGDPRRPYPTDIEMRLGYLGRLSDLPLNGQ- 179
Query: 268 LPQQSLG---DLHRTPSEL-----SQQNQFSWH-SGDMHIGNVPLDRQQQNSNR-ESEDV 317
+P G DLHR + SQ NQF+WH SG++H+ N+++ E+EDV
Sbjct: 180 MPGTHPGLSSDLHRAGHPVGEPPASQANQFAWHSSGEIHMSMSGQGSGVMNTHKQETEDV 239
Query: 318 EVM 320
EVM
Sbjct: 240 EVM 242
>gi|170055721|ref|XP_001863707.1| mediator complex subunit 4 [Culex quinquefasciatus]
gi|167875582|gb|EDS38965.1| mediator complex subunit 4 [Culex quinquefasciatus]
Length = 268
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 106/260 (40%), Positives = 154/260 (59%), Gaps = 48/260 (18%)
Query: 104 MSSKNISTGEKLLSLIDDIELVAK-----------KKQEAHNHLQKTVVYFNKNEVVKQS 152
MSS ++ST E+LL+++DDIE+++K +K + +H Q + +K++ +K +
Sbjct: 1 MSSYHLSTKERLLAIVDDIEIISKELIENTIAPKHQKISSADHAQLVELLVSKDKEMKST 60
Query: 153 FRIE-----IEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQAKQKLQSINKAN 207
++ IE ++ E+ + + + + AT+IFQA+QKL SI KA
Sbjct: 61 LQLAADQAGIERKMDGLRDQVRDQDEEINQLQKQLKEAEHILATSIFQARQKLTSIAKAT 120
Query: 208 KRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHL 267
KRPVSS+ELIK+AHRIS+SNA+CAPLTWQ GD RRPYPTDIEMR+GFLG+ +D +NGH
Sbjct: 121 KRPVSSDELIKFAHRISASNAICAPLTWQQGDLRRPYPTDIEMRLGFLGK-SDLTINGHQ 179
Query: 268 LP--QQSLGDLHRTPSEL-------------------SQQNQFSWH-SGDMHI-----GN 300
P Q SLG+++RT + S QNQF+WH SG++H+ +
Sbjct: 180 NPAGQNSLGEINRTGAAGGSGTTPGGSSGGGTGEIPASAQNQFAWHPSGELHMTMGGGSS 239
Query: 301 VPLDRQQQNSNRESEDVEVM 320
VPLD + + DVEVM
Sbjct: 240 VPLDTRAGGQD----DVEVM 255
>gi|118779661|ref|XP_309615.3| AGAP004063-PA [Anopheles gambiae str. PEST]
gi|158563994|sp|Q7QH62.3|MED4_ANOGA RecName: Full=Mediator of RNA polymerase II transcription subunit
4; AltName: Full=Mediator complex subunit 4
gi|116131519|gb|EAA05349.3| AGAP004063-PA [Anopheles gambiae str. PEST]
Length = 263
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 108/252 (42%), Positives = 156/252 (61%), Gaps = 37/252 (14%)
Query: 104 MSSKNISTGEKLLSLIDDIELVAK-----------KKQEAHNHLQKTVVYFNKNEVVKQS 152
MSS ++ST E+LL++I+DIE+VAK +K + +H Q + K++ +K +
Sbjct: 1 MSSYHLSTRERLLAIINDIEIVAKELIENTIAPKAQKMSSTDHAQLVELLVLKDKELKAT 60
Query: 153 FRIEIEEF-TKKSKNASTAGF----EDAHGVWESASGSNKNEATAIFQAKQKLQSINKAN 207
++ E+ +K+ +A E+ + + + + AT+IFQA+QKL SI KAN
Sbjct: 61 LQLAAEQAGIEKNMDALREQVRKQDEEINQLQRQLKEAEQILATSIFQARQKLASIAKAN 120
Query: 208 KRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHL 267
KRPVSSEELIK+AHRIS+S+A+CAPLTWQ GD RRPYPTDIEMR+GFLG+ +D +NGH
Sbjct: 121 KRPVSSEELIKFAHRISASHAICAPLTWQQGDLRRPYPTDIEMRLGFLGK-SDLNINGHN 179
Query: 268 LPQ-QSLGDLHRTPSEL-----------SQQNQFSWH-SGDMHI------GNVPLDRQQQ 308
L SL ++HR S + S NQF+WH SG++H+ G+V LD +
Sbjct: 180 LQHPNSLNEMHRNASTVGAGGAGGDIPASAPNQFAWHPSGELHMSMGAGAGSVSLD-TRA 238
Query: 309 NSNRESEDVEVM 320
+ + +DVEVM
Sbjct: 239 HKDASQDDVEVM 250
>gi|442763295|gb|JAA73806.1| Putative vitamin-d-receptor, partial [Ixodes ricinus]
Length = 245
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 117/246 (47%), Positives = 145/246 (58%), Gaps = 35/246 (14%)
Query: 110 STGEKLLSLIDDIELVAK-----------KKQEAHNHLQKTVVYFNKNEVVKQSFRI-EI 157
ST EKLL+L+DDIE++AK ++ + H Q + K+E +KQ+ + E
Sbjct: 6 STREKLLTLVDDIEIIAKELFENIIAPRSQRLTSTEHAQLAELLVAKDEELKQTLVVAEQ 65
Query: 158 EEFTKKSKNASTAGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
+ +K+ NA E D H + + +TAI+QAKQKLQSI KAN R VSS
Sbjct: 66 QAEVQKTINALQEEVEKQDHDIHLLQWHLKEAEHLLSTAIYQAKQKLQSIEKANARCVSS 125
Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQS- 272
EELIKYAHRIS+SNAV AP WQ GD RRPYPTDIEMR G+LGRL+D PL+G L QQ
Sbjct: 126 EELIKYAHRISASNAVAAPHNWQQGDQRRPYPTDIEMRQGYLGRLSDLPLSGPPLQQQGN 185
Query: 273 LGDL-----HRTPSELSQQNQFSWHSGDMHIGNV-PLDRQQQNS------NRESEDVEVM 320
LGDL H + L Q FSW G G++ P NS +E+EDVEVM
Sbjct: 186 LGDLSAARGHHDQNPLGQ--SFSWQIG----GDIKPPMSSNHNSVGMDTKAKENEDVEVM 239
Query: 321 STDSSS 326
STDSSS
Sbjct: 240 STDSSS 245
>gi|157112574|ref|XP_001657572.1| mediator complex, subunit, putative [Aedes aegypti]
gi|121956246|sp|Q177A7.1|MED4_AEDAE RecName: Full=Mediator of RNA polymerase II transcription subunit
4; AltName: Full=Mediator complex subunit 4
gi|108878017|gb|EAT42242.1| AAEL006193-PA [Aedes aegypti]
Length = 263
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 105/255 (41%), Positives = 154/255 (60%), Gaps = 43/255 (16%)
Query: 104 MSSKNISTGEKLLSLIDDIELVAK-----------KKQEAHNHLQKTVVYFNKNEVVKQS 152
MSS ++ST E+LL+++DDIE+++K +K + +H Q + +K++ +K +
Sbjct: 1 MSSYHLSTKERLLAIVDDIEIISKELIENTIAPKHQKMSSADHGQLVELLVSKDKELKAT 60
Query: 153 FRIEIEEFTKKSKNASTAGF--------EDAHGVWESASGSNKNEATAIFQAKQKLQSIN 204
++ E+ + K G E+ + + + + AT+IFQ +QKL SIN
Sbjct: 61 LQLAAEQAGIEKK---MDGLREQVKEQDEEINQLQKQLKEAEHILATSIFQGRQKLSSIN 117
Query: 205 KANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLN 264
KA KRPVSSEELIK+AHRIS+SNA+CAPLTWQ GD RRPYPTDIEMR+GFLG+ +D +N
Sbjct: 118 KAVKRPVSSEELIKFAHRISASNAICAPLTWQQGDLRRPYPTDIEMRLGFLGK-SDLNIN 176
Query: 265 GHLLP-QQSLGDLHRTPSEL-----------SQQNQFSWH-SGDMHI------GNVPLDR 305
GH P Q +L ++ R + S QNQF+WH SG++H+ G+V LD
Sbjct: 177 GHNAPNQNNLNEMQRNAAGAGAGSGVADIPASAQNQFAWHPSGELHMTMGAGAGSVSLDT 236
Query: 306 QQQNSNRESEDVEVM 320
+ + + +DVEVM
Sbjct: 237 -RSHKDASQDDVEVM 250
>gi|357622257|gb|EHJ73810.1| putative mediator complex subunit [Danaus plexippus]
Length = 233
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 138/224 (61%), Gaps = 29/224 (12%)
Query: 122 IELVAK-----------KKQEAHNHLQKTVVYFNKNEVVKQSFRIEIEEFTKKSK-NAST 169
+EL+AK +K A +H Q T + +K+ +K+S + E+ + K N
Sbjct: 1 MELIAKEIIEVSIAPKTQKLSAADHAQLTDLLLSKDVELKKSLELADEQANIQQKMNELK 60
Query: 170 AGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISS 225
A + D H + + + AT+++QA+QKL SI K+ KRPV SEELIK+AHRIS+
Sbjct: 61 AEVDNKDQDIHHLQRQLKDAEQILATSLYQARQKLASIVKSRKRPVPSEELIKFAHRISA 120
Query: 226 SNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQSLGDLHRTPS---E 282
SNAV APL+WQPGDPRRPYPTD+EMR+G LGRL D PLNGH +L DLHR +
Sbjct: 121 SNAVSAPLSWQPGDPRRPYPTDLEMRLGMLGRLCDLPLNGHT--PSTLNDLHRITTGGVP 178
Query: 283 LSQQNQFSWH-SGDMHI----GN-VPLDRQQQNSNRESEDVEVM 320
S NQF+WH SG++H+ GN V +D + + N+ EDVEVM
Sbjct: 179 ASATNQFTWHPSGELHMSVGGGNSVAIDGRNKEPNQ--EDVEVM 220
>gi|427792483|gb|JAA61693.1| hypothetical protein, partial [Rhipicephalus pulchellus]
Length = 249
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 111/239 (46%), Positives = 139/239 (58%), Gaps = 34/239 (14%)
Query: 110 STGEKLLSLIDDIELVAK-----------KKQEAHNHLQKTVVYFNKNEVVKQSFRIEIE 158
ST E+LL L+DDIE++AK ++ A H Q + K+E +KQ+ I
Sbjct: 4 STREQLLRLVDDIEIIAKELFENIIAPKNQRLSAAEHGQLAELLVAKDEELKQTLVIAAG 63
Query: 159 EF-TKKSKNASTAGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
+ +K+ N+ E D H + + +TAI+QAKQKLQSI KAN R VSS
Sbjct: 64 QAEVQKTINSLQEEVEKQDHDIHLLQWQLKEAEHLLSTAIYQAKQKLQSIEKANARAVSS 123
Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLL-PQQS 272
EELIKYAHRIS+SNAV AP WQ GDPRRPYPTDIEMR G+LGRL+D PL G L PQ S
Sbjct: 124 EELIKYAHRISASNAVAAPHNWQQGDPRRPYPTDIEMRQGYLGRLSDLPLTGPTLQPQGS 183
Query: 273 LGDL----HRTPSELSQQNQFSWHSGDMHIGNV--PLDRQQQN-----SNRESEDVEVM 320
LGDL H + L Q FSW G G++ PL + ++E+EDVEVM
Sbjct: 184 LGDLNAARHLDQNPLGQ--SFSWQIG----GDIKPPLSSNHNSVGMDAKSKENEDVEVM 236
>gi|321468733|gb|EFX79717.1| hypothetical protein DAPPUDRAFT_304415 [Daphnia pulex]
Length = 258
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 137/243 (56%), Gaps = 35/243 (14%)
Query: 110 STGEKLLSLIDDIELVAK-----------KKQEAHNHLQKTVVYFNKNEVVKQSFRIEIE 158
ST E LL+ IDDIE++AK +K + H Q + K+ +K + ++ E
Sbjct: 6 STREVLLTCIDDIEIIAKELLDNLIAQKQQKPMSTEHSQLVELVLQKDTDLKATLKLAEE 65
Query: 159 EFTKKSKNASTAGFEDAHGV-----WESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
+ + K + + H V + + + ATAIFQAKQKLQSI +AN RPV+S
Sbjct: 66 QGVLQQKVVALETEVERHDVEIRNLQKQLKEAEQLLATAIFQAKQKLQSITRANNRPVNS 125
Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHL------ 267
EELIK+AHRIS+SNAVCAPL WQ GD RRPYPTDIEMR+GFLGRL + +NGH+
Sbjct: 126 EELIKFAHRISASNAVCAPLNWQQGDLRRPYPTDIEMRLGFLGRLGEMNVNGHMSFPELL 185
Query: 268 -LPQQSLGDLHRTPSELSQQNQFSWHS-GDM--------HIGNVPLDRQQQNSNRESEDV 317
P SL P+ SQ +SW S D+ H+G V +N +E+EDV
Sbjct: 186 HRPNHSLQQGSSVPN--SQAGTYSWLSQNDLQMPCLSVSHLG-VSGGMDHKNPKKENEDV 242
Query: 318 EVM 320
+VM
Sbjct: 243 DVM 245
>gi|125978863|ref|XP_001353464.1| GA21204 [Drosophila pseudoobscura pseudoobscura]
gi|195160813|ref|XP_002021268.1| GL24898 [Drosophila persimilis]
gi|54642224|gb|EAL30973.1| GA21204 [Drosophila pseudoobscura pseudoobscura]
gi|194118381|gb|EDW40424.1| GL24898 [Drosophila persimilis]
Length = 256
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 105/251 (41%), Positives = 143/251 (56%), Gaps = 45/251 (17%)
Query: 106 SKNISTGEKLLSLIDDIELVAKKK-QEAHNHLQKTVV------YFNKNEVVKQSFRI--- 155
S ++ST E+LL LIDDIE++AK+ ++AH + T + K+E ++ +
Sbjct: 2 SFHLSTKERLLLLIDDIEMIAKELIEQAHQKISSTELGDLLDLLVAKDEEFRKMLELAEE 61
Query: 156 --EIEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
++E+ K + + + +S + +TAIFQA+QKL SIN+ANKRPVSS
Sbjct: 62 QAKVEDAMDKLRAKVEVHDREIQKLQKSLKDAELILSTAIFQARQKLASINQANKRPVSS 121
Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQSL 273
EELIKYAHRISS+NAV APLTW GD RRPYPTDIEMR G LG+ +D LNG +P Q+
Sbjct: 122 EELIKYAHRISSANAVSAPLTWCIGDLRRPYPTDIEMRNGLLGK-SDQNLNGGQVPHQNS 180
Query: 274 G---DLHR---------------TPSELSQQNQFSWHSGDMHI-----GN-VPLDRQQQN 309
G D+ R PS QNQF+W+ ++H+ GN V L+
Sbjct: 181 GLTPDVQRGLSGPGGAGSGGAGEVPSAF--QNQFNWNLSELHMTMGASGNSVALE----- 233
Query: 310 SNRESEDVEVM 320
R +DVEVM
Sbjct: 234 -TRAQDDVEVM 243
>gi|195376409|ref|XP_002046989.1| GJ13182 [Drosophila virilis]
gi|194154147|gb|EDW69331.1| GJ13182 [Drosophila virilis]
Length = 261
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/248 (41%), Positives = 143/248 (57%), Gaps = 34/248 (13%)
Query: 106 SKNISTGEKLLSLIDDIELVAKKK-QEAHNHLQKTVV------YFNKNEVVKQSFRI--- 155
S ++ST E+LL LIDDIE+++K+ ++AH + T + +K+E ++ +
Sbjct: 2 SFHLSTKERLLLLIDDIEMISKELIEQAHQKISSTELADLLDLLVSKDEEFRKMLELAEE 61
Query: 156 --EIEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
++EE K + + + +S + +TAIFQA+QKL SIN+ANKRPVSS
Sbjct: 62 QAKVEEAMDKLRANVEIHDREIQKLQKSLKDAELILSTAIFQARQKLASINQANKRPVSS 121
Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQSL 273
EELIKYAHRISS+NAV APLTW GD RRPYPTDIEMR G LG+ ++ +NG L+ Q+
Sbjct: 122 EELIKYAHRISSANAVSAPLTWCIGDLRRPYPTDIEMRNGLLGK-SEQNINGGLVTHQNT 180
Query: 274 G---DLHRTPSELSQ-------------QNQFSWHSGDMHI----GN-VPLDRQQQNSNR 312
D R S QNQFSW+ G++H+ GN V L+ + +
Sbjct: 181 AIQSDAQRNLSGTGGSGSGSGNEVPNAFQNQFSWNLGELHMMGASGNSVALETRAHKESS 240
Query: 313 ESEDVEVM 320
+DVEVM
Sbjct: 241 AQDDVEVM 248
>gi|195127467|ref|XP_002008190.1| GI13352 [Drosophila mojavensis]
gi|193919799|gb|EDW18666.1| GI13352 [Drosophila mojavensis]
Length = 261
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/248 (41%), Positives = 143/248 (57%), Gaps = 34/248 (13%)
Query: 106 SKNISTGEKLLSLIDDIELVAKKK-QEAHNHLQKTVV------YFNKNEVVKQSFRI--- 155
S ++ST E+LL LIDDIE+++K+ ++AH + T + +K+E ++ +
Sbjct: 2 SFHLSTKERLLLLIDDIEMISKELIEQAHQKISSTELADLLDLLVSKDEEFRKMLELAEE 61
Query: 156 --EIEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
++EE K + + + +S + +TAIFQA+QKL SIN+ANKRPVSS
Sbjct: 62 QAKVEEAMDKLRAKVEIHDREIQKLQKSLKDAELILSTAIFQARQKLASINQANKRPVSS 121
Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQSL 273
EELIKYAHRISS+NAV APLTW GD RRPYPTDIEMR G LG+ ++ +NG L+ Q+
Sbjct: 122 EELIKYAHRISSANAVSAPLTWCIGDLRRPYPTDIEMRNGLLGK-SEQNINGGLVTHQNS 180
Query: 274 G---DLHRTPSELSQ-------------QNQFSWHSGDMHI----GN-VPLDRQQQNSNR 312
D R S QNQFSW+ G++H+ GN V L+ + +
Sbjct: 181 AIQSDAQRNLSGTGGSSAGSGNEVPNAFQNQFSWNLGELHMMGASGNSVALETRAHKESS 240
Query: 313 ESEDVEVM 320
+DVEVM
Sbjct: 241 AQDDVEVM 248
>gi|195014398|ref|XP_001984014.1| GH16206 [Drosophila grimshawi]
gi|193897496|gb|EDV96362.1| GH16206 [Drosophila grimshawi]
Length = 261
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 100/247 (40%), Positives = 144/247 (58%), Gaps = 38/247 (15%)
Query: 109 ISTGEKLLSLIDDIELVAKKK-QEAHNHLQKTVV------YFNKNEVVKQSFRI-----E 156
+ST E+LL LIDDIE+++K+ ++AH + T + +K+E ++ + +
Sbjct: 5 LSTKERLLLLIDDIEMISKELIEQAHQKISSTELSELLDLLVSKDEEFRKMLELAEEQAK 64
Query: 157 IEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSSEEL 216
+EE + + + +S + +TAIFQA+QKL SIN+ANKRPVSSEEL
Sbjct: 65 VEEAMDNLRAKVEIHDREIQKLQKSLKDAELILSTAIFQARQKLASINQANKRPVSSEEL 124
Query: 217 IKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQS---L 273
IKYAHRISS+NAV APLTW GD RRPYPTDIEMR G LG+ ++ +NG ++ Q+
Sbjct: 125 IKYAHRISSANAVSAPLTWCIGDLRRPYPTDIEMRNGLLGK-SEQNINGGIVTHQNSTIQ 183
Query: 274 GDLHRTPSELSQ---------------QNQFSWHSGDMHI----GN-VPLDRQQQNSNRE 313
D R S QNQFSW+ G++H+ GN V L+ ++++S +
Sbjct: 184 SDAQRNLSAAGGPGGGGGGGGEVPNAFQNQFSWNLGELHMMGASGNSVALETRKESSAQ- 242
Query: 314 SEDVEVM 320
+DVEVM
Sbjct: 243 -DDVEVM 248
>gi|312373782|gb|EFR21469.1| hypothetical protein AND_17007 [Anopheles darlingi]
Length = 228
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 106/152 (69%), Gaps = 23/152 (15%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
AT+IFQA+QKL SI KANKRPVSSE+LIK+AHRIS+S+A+CAPLTWQ GD RRPYPTDIE
Sbjct: 66 ATSIFQARQKLASIAKANKRPVSSEDLIKFAHRISASHAICAPLTWQQGDLRRPYPTDIE 125
Query: 250 MRVGFLGRLNDSPLNGHLLPQ-QSLGDLHRTPSE-------------LSQQNQFSWH-SG 294
MR+GFLG+ +D +NGH L SL ++HR + + QNQF+WH SG
Sbjct: 126 MRLGFLGK-SDLNINGHNLQHPSSLNEMHRNAAVAASGAAGTGGEIPVPSQNQFTWHSSG 184
Query: 295 DMHI------GNVPLDRQQQNSNRESEDVEVM 320
++H+ G+V LD + + + +DVEVM
Sbjct: 185 ELHMSMGAGGGSVSLDT-RAHKDASQDDVEVM 215
>gi|21356995|ref|NP_648094.1| mediator complex subunit 4 [Drosophila melanogaster]
gi|74948447|sp|Q9VS38.1|MED4_DROME RecName: Full=Mediator of RNA polymerase II transcription subunit
4; AltName: Full=Mediator complex subunit 4; AltName:
Full=dp34
gi|7295269|gb|AAF50591.1| mediator complex subunit 4 [Drosophila melanogaster]
gi|16769662|gb|AAL29050.1| LD46084p [Drosophila melanogaster]
gi|220944668|gb|ACL84877.1| MED4-PA [synthetic construct]
gi|220954472|gb|ACL89779.1| MED4-PA [synthetic construct]
Length = 258
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 102/255 (40%), Positives = 142/255 (55%), Gaps = 51/255 (20%)
Query: 106 SKNISTGEKLLSLIDDIELVAKKK-QEAHNHLQKT------VVYFNKNEVVKQSFRI--- 155
S ++ST E+LL LIDDIE++AK+ ++AH + T + K+E ++ +
Sbjct: 2 SFHLSTKERLLLLIDDIEMIAKELIEQAHQKISSTELVDLLDLLVAKDEEFRKMLELAEE 61
Query: 156 --EIEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
++EE + + + + +S + +TAIFQA+QKL SIN+ANKRPVSS
Sbjct: 62 QAKVEEAMDQLRAKVEVHDREIQKLQKSLKDAELILSTAIFQARQKLASINQANKRPVSS 121
Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQSL 273
EELIKYAHRISS+NAV APLTW GD RRPYPTDIEMR G LG+ ++ +NG + Q+
Sbjct: 122 EELIKYAHRISSANAVSAPLTWCIGDLRRPYPTDIEMRNGLLGK-SEQNINGGTVTHQNS 180
Query: 274 GDLHRTPSELSQ----------------------QNQFSWHSGDMHI-----GN-VPLDR 305
G PSE + QNQF+W+ G++H+ GN V L+
Sbjct: 181 G----MPSEQQRTLSGSAGSGSGSGAGGEVPNAFQNQFNWNLGELHMTMGASGNTVALE- 235
Query: 306 QQQNSNRESEDVEVM 320
R +DVEVM
Sbjct: 236 -----TRAQDDVEVM 245
>gi|195492493|ref|XP_002094015.1| GE20432 [Drosophila yakuba]
gi|194180116|gb|EDW93727.1| GE20432 [Drosophila yakuba]
Length = 258
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 103/255 (40%), Positives = 142/255 (55%), Gaps = 51/255 (20%)
Query: 106 SKNISTGEKLLSLIDDIELVAKKK-QEAHNHLQKT------VVYFNKNEVVKQSFRI--- 155
S ++ST E+LL LIDDIE++AK+ ++AH + T + K+E ++ +
Sbjct: 2 SFHLSTKERLLLLIDDIEMIAKELIEQAHQKISSTELVDLLDLLVAKDEEFRKMLELAEE 61
Query: 156 --EIEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
++EE K + + + +S + +TAIFQA+QKL SIN+ANKRPVSS
Sbjct: 62 QAKVEEAMDKLRAKVEVHDREIQKLQKSLKDAELILSTAIFQARQKLASINQANKRPVSS 121
Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQSL 273
EELIKYAHRISS+NAV APLTW GD RRPYPTDIEMR G LG+ ++ +NG + Q+
Sbjct: 122 EELIKYAHRISSANAVSAPLTWCIGDLRRPYPTDIEMRNGLLGK-SEQNINGGPVTHQNS 180
Query: 274 GDLHRTPSELSQ----------------------QNQFSWHSGDMHI-----GN-VPLDR 305
G PSE + QNQF+W+ G++H+ GN V L+
Sbjct: 181 G----MPSEQQRTLSGSAGSGSGSGAGGEVPNAFQNQFNWNLGELHMTMGASGNTVALE- 235
Query: 306 QQQNSNRESEDVEVM 320
R +DVEVM
Sbjct: 236 -----TRAQDDVEVM 245
>gi|194865536|ref|XP_001971478.1| GG14986 [Drosophila erecta]
gi|190653261|gb|EDV50504.1| GG14986 [Drosophila erecta]
Length = 258
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 103/255 (40%), Positives = 142/255 (55%), Gaps = 51/255 (20%)
Query: 106 SKNISTGEKLLSLIDDIELVAKKK-QEAHNHLQKT------VVYFNKNEVVKQSFRI--- 155
S ++ST E+LL LIDDIE++AK+ ++AH + T + K+E ++ +
Sbjct: 2 SFHLSTKERLLLLIDDIEMIAKELIEQAHQKISSTELVDLLDLLVAKDEEFRKMLELADE 61
Query: 156 --EIEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
++EE K + + + +S + +TAIFQA+QKL SIN+ANKRPVSS
Sbjct: 62 QAKVEEAMDKLRAKVEVHDREIQKLQKSLKDAELILSTAIFQARQKLASINQANKRPVSS 121
Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQSL 273
EELIKYAHRISS+NAV APLTW GD RRPYPTDIEMR G LG+ ++ +NG + Q+
Sbjct: 122 EELIKYAHRISSANAVSAPLTWCIGDLRRPYPTDIEMRNGLLGK-SEQNINGGPVTHQNS 180
Query: 274 GDLHRTPSELSQ----------------------QNQFSWHSGDMHI-----GN-VPLDR 305
G PSE + QNQF+W+ G++H+ GN V L+
Sbjct: 181 G----MPSEQQRTLSGSAGSGSGSGAGGEVPNAFQNQFNWNLGELHMTMGASGNTVALE- 235
Query: 306 QQQNSNRESEDVEVM 320
R +DVEVM
Sbjct: 236 -----TRAQDDVEVM 245
>gi|195338119|ref|XP_002035673.1| GM13780 [Drosophila sechellia]
gi|195588410|ref|XP_002083951.1| GD13079 [Drosophila simulans]
gi|194128766|gb|EDW50809.1| GM13780 [Drosophila sechellia]
gi|194195960|gb|EDX09536.1| GD13079 [Drosophila simulans]
Length = 258
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 102/255 (40%), Positives = 142/255 (55%), Gaps = 51/255 (20%)
Query: 106 SKNISTGEKLLSLIDDIELVAKKK-QEAHNHLQKT------VVYFNKNEVVKQSFRI--- 155
S ++ST E+LL LIDDIE++AK+ ++AH + T + K+E ++ +
Sbjct: 2 SFHLSTKERLLLLIDDIEMIAKELIEQAHQKISSTELVDLLDLLVAKDEEFRKMLELAEE 61
Query: 156 --EIEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
++EE + + + + +S + +TAIFQA+QKL SIN+ANKRPVSS
Sbjct: 62 QAKVEEAMDQLRAKVEVHDREIQKLQKSLKDAELILSTAIFQARQKLASINQANKRPVSS 121
Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQSL 273
EELIKYAHRISS+NAV APLTW GD RRPYPTDIEMR G LG+ ++ +NG + Q+
Sbjct: 122 EELIKYAHRISSANAVSAPLTWCIGDLRRPYPTDIEMRNGLLGK-SEQNINGGPVTHQNS 180
Query: 274 GDLHRTPSELSQ----------------------QNQFSWHSGDMHI-----GN-VPLDR 305
G PSE + QNQF+W+ G++H+ GN V L+
Sbjct: 181 G----MPSEQQRTLSGSAGSGSGSGAGGEVPNAFQNQFNWNLGELHMTMGASGNTVALE- 235
Query: 306 QQQNSNRESEDVEVM 320
R +DVEVM
Sbjct: 236 -----TRAQDDVEVM 245
>gi|194750881|ref|XP_001957758.1| GF23865 [Drosophila ananassae]
gi|190625040|gb|EDV40564.1| GF23865 [Drosophila ananassae]
Length = 257
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/247 (39%), Positives = 140/247 (56%), Gaps = 42/247 (17%)
Query: 109 ISTGEKLLSLIDDIELVAKKK-QEAHNHLQKTVVY------FNKNEVVKQSFRI-----E 156
+ST E+LL L+DD+E+++K+ ++AH + T + K+E +++ + +
Sbjct: 5 LSTKERLLLLVDDMEMISKELIEQAHQKISSTDLADLLDLLVAKDEELRKMLELADEQAK 64
Query: 157 IEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSSEEL 216
+E+ K + + + +S + +TAIFQA+QKL SIN+ANKRPVSSEEL
Sbjct: 65 VEDAMDKLRAKVEVHDREIQKLQKSLKDAESILSTAIFQARQKLASINQANKRPVSSEEL 124
Query: 217 IKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQSLG-- 274
IKYAHRISS+NAV APLTW GD RRPYPTDIEMR G LG+ ++ LNG + Q+ G
Sbjct: 125 IKYAHRISSANAVSAPLTWCIGDLRRPYPTDIEMRNGLLGK-SEQNLNGGPVTHQNSGMA 183
Query: 275 -DLHRTPSEL--------------SQQNQFSWHSGDMHI-----GN-VPLDRQQQNSNRE 313
D R + QNQF+W+ G++H+ GN V L+ R
Sbjct: 184 SDQQRNLGGSGSSSGAGASGEVPNAYQNQFNWNLGELHMTMGASGNTVALE------TRA 237
Query: 314 SEDVEVM 320
+DVEVM
Sbjct: 238 QDDVEVM 244
>gi|58332132|ref|NP_001011218.1| mediator of RNA polymerase II transcription subunit 4 [Xenopus
(Silurana) tropicalis]
gi|82179512|sp|Q5M8Y7.1|MED4_XENTR RecName: Full=Mediator of RNA polymerase II transcription subunit
4; AltName: Full=Mediator complex subunit 4
gi|56556323|gb|AAH87778.1| hypothetical LOC496653 [Xenopus (Silurana) tropicalis]
Length = 252
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 143/245 (58%), Gaps = 33/245 (13%)
Query: 104 MSSKNISTGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRIEIEEFT 161
M+ ST E+L+S +DD+E+++++ E A + QK +N++++ + + EF
Sbjct: 1 MAVPEKSTKERLMSFLDDLEVLSRELIEMLALSRNQKLSQPGEENQILELLIQKD-GEFQ 59
Query: 162 KKSKNASTAG--------FE--------DAHGVWESASGSNKNEATAIFQAKQKLQSINK 205
+ K A + G E D + + + ATA++QAK+KL+SI+K
Sbjct: 60 ELMKVALSQGKIHQEMQVLEKEVEKRDSDIQQLQKQLKEAEHILATAVYQAKEKLKSIDK 119
Query: 206 ANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSP--- 262
A K +SSEELIKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++++ P
Sbjct: 120 ARKGAISSEELIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMSNLPTNG 179
Query: 263 LNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDRQQQ------NSNRES-E 315
+NGH LP +L R P L+ Q+ W S DM + +P + + N+E+ E
Sbjct: 180 VNGH-LPGDALAA-GRLPDVLAP--QYPWQSNDMSMNMLPPNHSNEFLMESLGPNKENEE 235
Query: 316 DVEVM 320
DVEVM
Sbjct: 236 DVEVM 240
>gi|395521042|ref|XP_003764630.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
[Sarcophilus harrisii]
Length = 271
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 140/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST EKLLS+++D+E+++++ E A + QK + +N++++ E +E K +
Sbjct: 26 STREKLLSVLEDLEVLSRELIENLAISRSQKLLQPGEENQIIELLIHRDGEFQELMKLAL 85
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
E D + + + + ATA++QAK+KL+SI+KA K +S
Sbjct: 86 EQGKVHHEMQLLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIDKARKGAIS 145
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 146 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LP 204
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVEVM
Sbjct: 205 GDALA-AGRLPDVLAP--QYPWQSSDMSVNMLPPNHSNDFMLEPPGHNKENEDDVEVM 259
>gi|74216864|dbj|BAE26554.1| unnamed protein product [Mus musculus]
Length = 279
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRIE--IEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ + +E K +
Sbjct: 34 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQLEEENQVLELLIHRDGDFQELMKLAL 93
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 94 NQGKVHHEMQALEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 153
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ S +NGH LP
Sbjct: 154 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTSGVNGH-LP 212
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVEVM
Sbjct: 213 GDALAA-GRLPDVLAP--QYPWQSNDMSVNMLPPNHSSDFLLEPPGHNKENEDDVEVM 267
>gi|149049946|gb|EDM02270.1| mediator of RNA polymerase II transcription, subunit 4 homolog
(yeast) [Rattus norvegicus]
Length = 279
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRIE--IEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ + +E K +
Sbjct: 34 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQLEEENQVLELLIHRDGDFQELMKLAL 93
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 94 NQGKVHHEMQALEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 153
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ S +NGH LP
Sbjct: 154 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTSGVNGH-LP 212
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVEVM
Sbjct: 213 GDALAA-GRLPDVLAP--QYPWQSNDMSVNMLPPNHSTDFLLEPPGHNKENEDDVEVM 267
>gi|66730397|ref|NP_001019427.1| mediator of RNA polymerase II transcription subunit 4 [Rattus
norvegicus]
gi|81888002|sp|Q561Q8.1|MED4_RAT RecName: Full=Mediator of RNA polymerase II transcription subunit
4; AltName: Full=Mediator complex subunit 4
gi|62531225|gb|AAH93402.1| Mediator complex subunit 4 [Rattus norvegicus]
Length = 270
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRIE--IEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ + +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQLEEENQVLELLIHRDGDFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKVHHEMQALEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ S +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTSGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVEVM
Sbjct: 204 GDALAA-GRLPDVLAP--QYPWQSNDMSVNMLPPNHSTDFLLEPPGHNKENEDDVEVM 258
>gi|13385626|ref|NP_080395.1| mediator of RNA polymerase II transcription subunit 4 [Mus
musculus]
gi|62900597|sp|Q9CQA5.1|MED4_MOUSE RecName: Full=Mediator of RNA polymerase II transcription subunit
4; AltName: Full=Mediator complex subunit 4
gi|12845586|dbj|BAB26809.1| unnamed protein product [Mus musculus]
gi|12846310|dbj|BAB27118.1| unnamed protein product [Mus musculus]
gi|19354324|gb|AAH24950.1| Mediator of RNA polymerase II transcription, subunit 4 homolog
(yeast) [Mus musculus]
gi|148703908|gb|EDL35855.1| mediator of RNA polymerase II transcription, subunit 4 homolog
(yeast), isoform CRA_a [Mus musculus]
Length = 270
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRIE--IEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ + +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQLEEENQVLELLIHRDGDFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKVHHEMQALEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ S +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTSGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVEVM
Sbjct: 204 GDALAA-GRLPDVLAP--QYPWQSNDMSVNMLPPNHSSDFLLEPPGHNKENEDDVEVM 258
>gi|147907120|ref|NP_001088367.1| mediator of RNA polymerase II transcription subunit 4 [Xenopus
laevis]
gi|82180224|sp|Q5XG48.1|MED4_XENLA RecName: Full=Mediator of RNA polymerase II transcription subunit
4; AltName: Full=Mediator complex subunit 4
gi|54038749|gb|AAH84617.1| LOC495214 protein [Xenopus laevis]
Length = 252
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 143/245 (58%), Gaps = 33/245 (13%)
Query: 104 MSSKNISTGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRIEIEEFT 161
M+ ST E+L SL+DD+E+++++ E A + QK +N++++ + + EF
Sbjct: 1 MAVPKKSTKERLESLLDDLEVLSREVIETLALSRSQKLSQPGEENQILELLIQKD-GEFQ 59
Query: 162 KKSKNASTAG--------FE--------DAHGVWESASGSNKNEATAIFQAKQKLQSINK 205
+ K A + G E D + + + ATA++QAK+KL+SI+K
Sbjct: 60 ELMKVAFSQGKTHQEMQVLEKEVEKRDSDIQQLQKQLKEAEHILATAVYQAKEKLKSIDK 119
Query: 206 ANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSP--- 262
A K +SSEELIKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++++ P
Sbjct: 120 ARKGVISSEELIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMSNLPTNG 179
Query: 263 LNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDRQQQ------NSNRES-E 315
+NGH LP +L R P L+ Q+ W S DM + +P + + N+E+ E
Sbjct: 180 VNGH-LPGDALAA-GRLPDVLA--PQYPWQSSDMSMNMLPPNHSNEFLMESLGPNKENEE 235
Query: 316 DVEVM 320
DVEVM
Sbjct: 236 DVEVM 240
>gi|344241030|gb|EGV97133.1| Mediator of RNA polymerase II transcription subunit 4 [Cricetulus
griseus]
Length = 270
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRIE--IEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ + +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQLDEENQVLELLIHRDGDFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKVHHEMQALEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ S +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTSGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVEVM
Sbjct: 204 GDALA-AGRLPDVLAP--QYPWQSNDMSVNMLPPNHSSDFLLEPPGHNKENEDDVEVM 258
>gi|354492638|ref|XP_003508454.1| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Cricetulus griseus]
Length = 279
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRIE--IEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ + +E K +
Sbjct: 34 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQLDEENQVLELLIHRDGDFQELMKLAL 93
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 94 NQGKVHHEMQALEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 153
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ S +NGH LP
Sbjct: 154 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTSGVNGH-LP 212
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVEVM
Sbjct: 213 GDALAA-GRLPDVLAP--QYPWQSNDMSVNMLPPNHSSDFLLEPPGHNKENEDDVEVM 267
>gi|49456617|emb|CAG46629.1| VDRIP [Homo sapiens]
Length = 270
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQAGEENQVLELLIHRDGEFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQTLATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVE+M
Sbjct: 204 GDALA-AGRLPDVLAP--QYPWQSNDMSMNMLPPNHSSDFLLEPPGHNKENEDDVEIM 258
>gi|402901978|ref|XP_003913908.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
isoform 1 [Papio anubis]
Length = 270
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 143/245 (58%), Gaps = 32/245 (13%)
Query: 103 NMSSKNISTGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIE 158
M+S N ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +
Sbjct: 19 GMASGN-STRERLLSALEDLEVLSRELIEMLAISRNQKLLQAGEENQVLELLIHRDGEFQ 77
Query: 159 EFTKKSKNASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINK 205
E K + N E D + + + + ATA++QAK+KL+SI K
Sbjct: 78 ELMKLALNQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEK 137
Query: 206 ANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SP 262
A K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ +
Sbjct: 138 ARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNG 197
Query: 263 LNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE- 315
+NGH LP +L R P L+ Q+ W S DM + +P + + N+E+E
Sbjct: 198 VNGH-LPGDALAA-GRLPDVLAP--QYPWQSNDMSMNMLPPNHSSDFLLEPPGHNKENED 253
Query: 316 DVEVM 320
DVE+M
Sbjct: 254 DVEIM 258
>gi|417398136|gb|JAA46101.1| Putative mediator of rna polymerase ii transcription subunit 4-like
protein [Desmodus rotundus]
Length = 270
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 140/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQAGEENQVLELLIHRDGEFQELMKLAF 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
+ E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 DQGRVHHEMQLLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSANGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W SGDM + +P + + N+E+E DVEVM
Sbjct: 204 GDALA-AGRLPDVLAP--QYPWQSGDMAMNMLPPNHSSDFLLEPPGHNKENEDDVEVM 258
>gi|62896985|dbj|BAD96433.1| mediator of RNA polymerase II transcription, subunit 4 homolog
[Homo sapiens]
Length = 270
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 140/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQAGEENQVLELLIHRDGEFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ +Q+ W S DM + +P + + N+E+E DVE+M
Sbjct: 204 GDALA-AGRLPDVLA--SQYPWQSNDMSMNMLPPNHSSDFLLEPPGHNKENEDDVEIM 258
>gi|395848162|ref|XP_003796728.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
[Otolemur garnettii]
Length = 270
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQTGEENQVLELLIHRDGEFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKIHHEMQVLEKEVEKRDNDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVEVM
Sbjct: 204 GDALA-AGRLPDVLAP--QYPWQSNDMSMNMLPPNHSNDFLLEPPGHNKENEDDVEVM 258
>gi|440895013|gb|ELR47314.1| Mediator of RNA polymerase II transcription subunit 4, partial [Bos
grunniens mutus]
Length = 279
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 139/239 (58%), Gaps = 33/239 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 34 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQSGEENQVLELLIHRDGEFQELMKLAL 93
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 94 NQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 153
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSP----LNGHLL 268
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N SP +NGH L
Sbjct: 154 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMN-SPSTNGVNGH-L 211
Query: 269 PQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
P +L R P L+ Q+ W S DM + +P + + N+E+E DVEVM
Sbjct: 212 PGDALAA-GRLPDVLAP--QYPWQSNDMAMNMLPPNHSHDFLLEPPGHNKENEDDVEVM 267
>gi|7661788|ref|NP_054885.1| mediator of RNA polymerase II transcription subunit 4 isoform 1
[Homo sapiens]
gi|114649587|ref|XP_509775.2| PREDICTED: mediator of RNA polymerase II transcription subunit 4
isoform 3 [Pan troglodytes]
gi|297694038|ref|XP_002824305.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
isoform 1 [Pongo abelii]
gi|397480391|ref|XP_003811468.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
isoform 1 [Pan paniscus]
gi|426375427|ref|XP_004054541.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
isoform 1 [Gorilla gorilla gorilla]
gi|29840770|sp|Q9NPJ6.1|MED4_HUMAN RecName: Full=Mediator of RNA polymerase II transcription subunit
4; AltName: Full=Activator-recruited cofactor 36 kDa
component; Short=ARC36; AltName: Full=Mediator complex
subunit 4; AltName: Full=TRAP/SMCC/PC2 subunit p36
subunit; AltName: Full=Vitamin D3 receptor-interacting
protein complex 36 kDa component; Short=DRIP36
gi|6841474|gb|AAF29090.1|AF161475_1 HSPC126 [Homo sapiens]
gi|10732795|gb|AAG22542.1|AF300618_1 vitamin D receptor-interacting protein complex component DRIP36
[Homo sapiens]
gi|7023507|dbj|BAA91987.1| unnamed protein product [Homo sapiens]
gi|119629189|gb|EAX08784.1| mediator of RNA polymerase II transcription, subunit 4 homolog
(yeast), isoform CRA_b [Homo sapiens]
gi|119629190|gb|EAX08785.1| mediator of RNA polymerase II transcription, subunit 4 homolog
(yeast), isoform CRA_b [Homo sapiens]
Length = 270
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQAGEENQVLELLIHRDGEFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVE+M
Sbjct: 204 GDALA-AGRLPDVLAP--QYPWQSNDMSMNMLPPNHSSDFLLEPPGHNKENEDDVEIM 258
>gi|332241889|ref|XP_003270117.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
isoform 1 [Nomascus leucogenys]
Length = 270
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQAGEENQVLELLIHRDGEFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVE+M
Sbjct: 204 GDALAA-GRLPDVLAP--QYPWQSNDMSMNMLPPNHSSDFLLEPPGHNKENEDDVEIM 258
>gi|355754691|gb|EHH58592.1| Mediator complex subunit 4 [Macaca fascicularis]
Length = 270
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQAGEENQVLELLIHRDGEFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVE+M
Sbjct: 204 GDALAA-GRLPDVLAP--QYPWQSNDMSMNMLPPNHSSDFLLEPPGHNKENEDDVEIM 258
>gi|388453072|ref|NP_001252711.1| mediator of RNA polymerase II transcription subunit 4 [Macaca
mulatta]
gi|355700989|gb|EHH29010.1| Mediator complex subunit 4 [Macaca mulatta]
gi|387539622|gb|AFJ70438.1| mediator of RNA polymerase II transcription subunit 4 [Macaca
mulatta]
Length = 270
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQAGEENQVLELLIHRDGEFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVE+M
Sbjct: 204 GDALAA-GRLPDVLAP--QYPWQSNDMSMNMLPPNHSSDFLLEPPGHNKENEDDVEIM 258
>gi|410947374|ref|XP_003980424.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
[Felis catus]
Length = 270
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLPPDEENQVLELLIHRDGEFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVEVM
Sbjct: 204 GDALA-AGRLPDVLAP--QYPWQSNDMSMNMLPPNHSNDFLLEPPGHNKENEDDVEVM 258
>gi|355702051|gb|AES01803.1| Mediator complex subunit 4 [Mustela putorius furo]
Length = 269
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLPPDEENQVLELLIHRDGEFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVEVM
Sbjct: 204 GDALA-AGRLPDVLAP--QYPWQSNDMSMNMLPPNHSNDFLLEPPGHNKENEDDVEVM 258
>gi|291408938|ref|XP_002720767.1| PREDICTED: mediator complex subunit 4 [Oryctolagus cuniculus]
Length = 270
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQPGEENQVLELLIHRDGEFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSANGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVEVM
Sbjct: 204 GDALAA-GRLPDVLAP--QYPWQSNDMSMNMLPPNHSNDFLLEPPGHNKENEDDVEVM 258
>gi|77735923|ref|NP_001029658.1| mediator of RNA polymerase II transcription subunit 4 [Bos taurus]
gi|122140151|sp|Q3SYZ9.1|MED4_BOVIN RecName: Full=Mediator of RNA polymerase II transcription subunit
4; AltName: Full=Mediator complex subunit 4
gi|74267919|gb|AAI03313.1| Mediator complex subunit 4 [Bos taurus]
gi|296481815|tpg|DAA23930.1| TPA: mediator of RNA polymerase II transcription subunit 4 [Bos
taurus]
Length = 270
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQSGEENQVLELLIHRDGEFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVEVM
Sbjct: 204 GDALA-AGRLPDVLAP--QYPWQSNDMAMNMLPPNHSHDFLLEPPGHNKENEDDVEVM 258
>gi|195440899|ref|XP_002068273.1| GK13126 [Drosophila willistoni]
gi|194164358|gb|EDW79259.1| GK13126 [Drosophila willistoni]
Length = 267
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 143/259 (55%), Gaps = 50/259 (19%)
Query: 106 SKNISTGEKLLSLIDDIELVAKKK-QEAHNHL------QKTVVYFNKNEVVKQSFRI--- 155
S ++ST E+LL LIDDIE++AK+ ++AH + + +K+E ++ +
Sbjct: 2 SFHLSTKERLLLLIDDIEMIAKELIEQAHQKISSNELVDLLDLLVSKDEEFRKMLELAEE 61
Query: 156 --EIEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
++EE K + + + +S + +TAIFQA+QKL SIN+ANKRPVSS
Sbjct: 62 QAKVEESMDKLRAKVEVHDREIQKLQKSLKDAELILSTAIFQARQKLASINQANKRPVSS 121
Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGR----LNDS-PL----N 264
EELIKYAHRISS+NAV APLTW GD RRPYPTDIEMR G LG+ LN S P+ +
Sbjct: 122 EELIKYAHRISSANAVSAPLTWCIGDLRRPYPTDIEMRNGLLGKSEQNLNGSGPMTHQNS 181
Query: 265 GHLLPQQSLGDLHRTPSELSQ------------------QNQFSWHSGDMHI-----GNV 301
G Q+SLG + S QNQF+W+ G++H+ G+V
Sbjct: 182 GLTTDQRSLGSGSGSGSGSGGGGGGSSGGGGSGEVPNAFQNQFNWNLGELHMMGASGGSV 241
Query: 302 PLDRQQQNSNRESEDVEVM 320
L+ R +DVEVM
Sbjct: 242 ALE------TRAQDDVEVM 254
>gi|403303279|ref|XP_003942264.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
isoform 1 [Saimiri boliviensis boliviensis]
Length = 270
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQAGEENQVLELLIHRDGEFQELMKLAV 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVE+M
Sbjct: 204 GDALAA-GRLPDVLAP--QYPWQSNDMSMNMLPPNHSSDFLLEPPGHNKENEDDVEIM 258
>gi|296189294|ref|XP_002742719.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
[Callithrix jacchus]
Length = 283
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 38 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQAGEENQVLELLIHRDGEFQELMKLAV 97
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 98 NQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 157
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 158 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LP 216
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVE+M
Sbjct: 217 GDALAA-GRLPDVLAP--QYPWQSNDMAMNMLPPNHSSDFLLEPPGHNKENEDDVEIM 271
>gi|13528774|gb|AAH05189.1| Mediator complex subunit 4 [Homo sapiens]
gi|123992800|gb|ABM84002.1| mediator of RNA polymerase II transcription, subunit 4 homolog (S.
cerevisiae) [synthetic construct]
gi|123999576|gb|ABM87332.1| mediator of RNA polymerase II transcription, subunit 4 homolog (S.
cerevisiae) [synthetic construct]
Length = 270
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 138/238 (57%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQAGEENQVLELLIHRDGEFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKIHHEMQVLEKEVEKRDGDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E E DVE+M
Sbjct: 204 GDALA-AGRLPDVLAP--QYPWQSNDMSMNMLPPNHSSDFLLEPPGHNKEDEDDVEIM 258
>gi|426236319|ref|XP_004012117.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
[Ovis aries]
Length = 270
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQSGEENQVLELLIHRDGEFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W + DM + +P + + N+E+E DVEVM
Sbjct: 204 GDALA-AGRLPDVLAP--QYPWQASDMAMSMLPPNHSHDFLLEPPGHNKENEDDVEVM 258
>gi|7141320|gb|AAF37289.1|AF230381_1 p36 TRAP/SMCC/PC2 subunit [Homo sapiens]
Length = 270
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQAGEENQVLELLIHRDGEFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EM+ G LG++N+ + +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMKSGLLGQMNNPSTNGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVE+M
Sbjct: 204 GDALA-AGRLPDVLAP--QYPWQSNDMSMNMLPPNHSSDFLLEPPGHNKENEDDVEIM 258
>gi|149730230|ref|XP_001489954.1| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Equus caballus]
Length = 270
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQAGEENQVLELLIHRDGEFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S +M + +P + + N+E+E DVEVM
Sbjct: 204 GDALAA-GRLPDVLAP--QYPWQSNEMSMNMLPPNHSNDFLLEPPGHNKENEDDVEVM 258
>gi|301767488|ref|XP_002919159.1| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Ailuropoda melanoleuca]
gi|281349740|gb|EFB25324.1| hypothetical protein PANDA_007756 [Ailuropoda melanoleuca]
Length = 270
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 140/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRIE--IEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ + +E K ++
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLPPDEENQVLELLIHRDGGFQERMKLAR 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NRGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVEVM
Sbjct: 204 GDALA-AGRLPDVLAP--QYPWQSNDMSMNMLPPNHSNDFLLEPPGHNKENEDDVEVM 258
>gi|62897595|dbj|BAD96737.1| mediator of RNA polymerase II transcription, subunit 4 homolog
[Homo sapiens]
Length = 270
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQAGEENQVLELLIHRDGEFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA+++AK+KL+SI KA K +S
Sbjct: 85 NQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYRAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVE+M
Sbjct: 204 GDALA-AGRLPDVLAP--QYPWQSNDMSMNMLPPNHSSDFLLEPPGHNKENEDDVEIM 258
>gi|344281802|ref|XP_003412666.1| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Loxodonta africana]
Length = 270
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N++++ E ++ K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQAEEENQILELLIHRDGEFQDLMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVEVM
Sbjct: 204 GDALA-AGRLPDVLAP--QYPWQSNDMSMNMLPPNHSNDFLLEPPGHNKENEDDVEVM 258
>gi|48146669|emb|CAG33557.1| VDRIP [Homo sapiens]
Length = 270
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 138/238 (57%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQAGEENQVLELLIHRDGEFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKY HRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 145 SEEIIKYPHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVE+M
Sbjct: 204 GDALA-AGRLPDVLAP--QYPWQSNDMSMNMLPPNHSSDFLLEPPGHNKENEDDVEIM 258
>gi|348583537|ref|XP_003477529.1| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Cavia porcellus]
Length = 270
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 137/237 (57%), Gaps = 31/237 (13%)
Query: 111 TGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSKN 166
T E+LLS ++D+E+++++ E A + QK +N+V++ E +E K + N
Sbjct: 26 TRERLLSALEDLEVLSRELIEMLAISRNQKLSQAGEENQVLELLIHRDGEFQELMKLALN 85
Query: 167 ASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
E D + + + + ATA++QAK+KL+SI KA K +SS
Sbjct: 86 QGKVHHEMQVLEKEVEKRDNDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAISS 145
Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLPQ 270
EE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 146 EEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LPG 204
Query: 271 QSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVEVM
Sbjct: 205 DALA-AGRLPDVLAP--QYPWQSNDMSMNMLPPNHSNDFLLEPPGHNKENEDDVEVM 258
>gi|431902375|gb|ELK08876.1| Mediator of RNA polymerase II transcription subunit 4 [Pteropus
alecto]
Length = 332
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 98/141 (69%), Gaps = 14/141 (9%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI KA K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct: 184 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 243
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR- 305
MR G LG++N+ + +NGH LP +L R P L+ Q+ W S DM + +P +
Sbjct: 244 MRSGLLGQMNNPSTNGVNGH-LPGDALAA-GRLPDVLAP--QYPWQSNDMAMNMLPPNHS 299
Query: 306 -----QQQNSNRESE-DVEVM 320
+ N+E+E DVEVM
Sbjct: 300 NDFLLEPPGHNKENEDDVEVM 320
>gi|405960272|gb|EKC26211.1| Mediator of RNA polymerase II transcription subunit 4 [Crassostrea
gigas]
Length = 255
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 109/181 (60%), Gaps = 17/181 (9%)
Query: 108 NISTGEKLLSLIDDIELVAK------------KKQEAHNHLQKTVVYFNKNEVVKQSFRI 155
+IST +KL SLI+D+EL++K +K +A + + + K++ +K++ ++
Sbjct: 3 DISTKQKLYSLIEDVELISKELFEVAATPKSQQKPDAMDSITLVELVTMKDKEIKETLKL 62
Query: 156 EIEEFTKKSKNASTAGFEDAHGVWESASGSNKNEA-----TAIFQAKQKLQSINKANKRP 210
E+ + D N EA TAI+QAKQKL +IN+AN R
Sbjct: 63 AAEQAEIQKTIDELRTEVDKRDAEIKHLQKNLKEAETILSTAIYQAKQKLTAINQANNRK 122
Query: 211 VSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQ 270
+SSEELIK+AHRIS+SNAV +P TW PGDPRRPYPTD EMR+GFLG++ D PLN +L
Sbjct: 123 ISSEELIKFAHRISASNAVASPPTWMPGDPRRPYPTDFEMRLGFLGKVGDLPLNTPVLQS 182
Query: 271 Q 271
Q
Sbjct: 183 Q 183
>gi|327261147|ref|XP_003215393.1| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Anolis carolinensis]
Length = 256
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 98/141 (69%), Gaps = 14/141 (9%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+S+ KA K VSSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct: 108 ATAVYQAKEKLKSVEKARKGAVSSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 167
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR- 305
MR G LG++N+ + +NGH LP +L R P L+ Q+ W S DM + +P +
Sbjct: 168 MRSGLLGQMNNPSANGVNGH-LPGDALA-AGRLPDVLAP--QYPWQSSDMSMNMLPPNHS 223
Query: 306 -----QQQNSNRESE-DVEVM 320
+ N+E+E DVEVM
Sbjct: 224 NDFMLEPPGHNKENEDDVEVM 244
>gi|387016902|gb|AFJ50569.1| Mediator of RNA polymerase II transcription subunit 4-like
[Crotalus adamanteus]
Length = 256
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 98/141 (69%), Gaps = 14/141 (9%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI KA K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct: 108 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 167
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR- 305
MR G LG++N+ + +NGH LP +L R P L+ Q+ W S DM + +P +
Sbjct: 168 MRSGLLGQMNNPSANGVNGH-LPGDALA-AGRLPDVLAP--QYPWQSSDMSMNMLPPNHS 223
Query: 306 -----QQQNSNRESE-DVEVM 320
+ N+E+E DVEVM
Sbjct: 224 NDFILEPPGHNKENEDDVEVM 244
>gi|350589865|ref|XP_003131021.3| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Sus scrofa]
Length = 335
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 98/141 (69%), Gaps = 14/141 (9%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI KA K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct: 187 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 246
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR- 305
MR G LG++N+ + +NGH LP +L R P L+ Q+ W S DM + +P +
Sbjct: 247 MRSGLLGQMNNPSTNGVNGH-LPGDALAA-GRLPDVLAP--QYPWQSNDMAMNMLPPNHS 302
Query: 306 -----QQQNSNRESE-DVEVM 320
+ N+E+E DVEVM
Sbjct: 303 NDFLLEPPGHNKENEDDVEVM 323
>gi|50730867|ref|XP_417054.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
[Gallus gallus]
Length = 261
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 98/141 (69%), Gaps = 14/141 (9%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI KA K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct: 113 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 172
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR- 305
MR G LG++N+ + +NGH LP +L R P L+ Q+ W S DM + +P +
Sbjct: 173 MRSGLLGQMNNPSTNGVNGH-LPGDALA-AGRLPDVLAP--QYPWQSSDMSMNMLPPNHS 228
Query: 306 -----QQQNSNRESE-DVEVM 320
+ N+E+E DVEVM
Sbjct: 229 NDFMLEPPGHNKENEDDVEVM 249
>gi|444732062|gb|ELW72385.1| Mediator of RNA polymerase II transcription subunit 4 [Tupaia
chinensis]
Length = 224
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 98/141 (69%), Gaps = 14/141 (9%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI KA K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct: 76 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 135
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR- 305
MR G LG++N+ + +NGH LP +L R P L+ Q+ W S DM + +P +
Sbjct: 136 MRSGLLGQMNNPSTNGVNGH-LPGDALA-AGRLPDVLAP--QYPWQSNDMSMNMLPPNHS 191
Query: 306 -----QQQNSNRESE-DVEVM 320
+ N+E+E DVEVM
Sbjct: 192 NDFLLEPPGHNKENEDDVEVM 212
>gi|403303281|ref|XP_003942265.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
isoform 2 [Saimiri boliviensis boliviensis]
Length = 224
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/141 (53%), Positives = 98/141 (69%), Gaps = 14/141 (9%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI KA K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct: 76 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 135
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR- 305
MR G LG++N+ + +NGH LP +L R P L+ Q+ W S DM + +P +
Sbjct: 136 MRSGLLGQMNNPSTNGVNGH-LPGDALA-AGRLPDVLAP--QYPWQSNDMSMNMLPPNHS 191
Query: 306 -----QQQNSNRESE-DVEVM 320
+ N+E+E DVE+M
Sbjct: 192 SDFLLEPPGHNKENEDDVEIM 212
>gi|225716556|gb|ACO14124.1| Mediator of RNA polymerase II transcription subunit 4 [Esox lucius]
Length = 256
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/141 (52%), Positives = 96/141 (68%), Gaps = 14/141 (9%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI+KA K +SSEE+IKYAHRIS+SNAVCAPL W PGDPRRPYPTD+E
Sbjct: 108 ATAVYQAKEKLKSIDKARKGSISSEEIIKYAHRISASNAVCAPLNWVPGDPRRPYPTDLE 167
Query: 250 MRVGFLGRLNDSP---LNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP---- 302
MR G LG +++ P +NGH LP +L R P L+ Q+ W S D+ +G +P
Sbjct: 168 MRSGMLGHMSNLPTNGVNGH-LPGDALA-AGRLPDVLT--PQYPWQSSDVSVGMLPPHHG 223
Query: 303 --LDRQQQNSNRESE-DVEVM 320
+ N+E+E DVE M
Sbjct: 224 NDFGLEPPGHNKENEDDVEAM 244
>gi|397739073|ref|NP_001257558.1| mediator of RNA polymerase II transcription subunit 4 isoform 2
[Homo sapiens]
gi|114649592|ref|XP_001151473.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
isoform 2 [Pan troglodytes]
gi|297694040|ref|XP_002824306.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
isoform 2 [Pongo abelii]
gi|332241891|ref|XP_003270118.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
isoform 2 [Nomascus leucogenys]
gi|397480393|ref|XP_003811469.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
isoform 2 [Pan paniscus]
gi|402901980|ref|XP_003913909.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
isoform 2 [Papio anubis]
gi|426375429|ref|XP_004054542.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
isoform 2 [Gorilla gorilla gorilla]
gi|426375431|ref|XP_004054543.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
isoform 3 [Gorilla gorilla gorilla]
gi|194377832|dbj|BAG63279.1| unnamed protein product [Homo sapiens]
gi|208966732|dbj|BAG73380.1| mediator complex subunit 4 [synthetic construct]
Length = 224
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/141 (53%), Positives = 98/141 (69%), Gaps = 14/141 (9%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI KA K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct: 76 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 135
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR- 305
MR G LG++N+ + +NGH LP +L R P L+ Q+ W S DM + +P +
Sbjct: 136 MRSGLLGQMNNPSTNGVNGH-LPGDALA-AGRLPDVLAP--QYPWQSNDMSMNMLPPNHS 191
Query: 306 -----QQQNSNRESE-DVEVM 320
+ N+E+E DVE+M
Sbjct: 192 SDFLLEPPGHNKENEDDVEIM 212
>gi|345788760|ref|XP_534120.3| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Canis lupus familiaris]
Length = 224
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 98/141 (69%), Gaps = 14/141 (9%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI KA K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct: 76 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 135
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR- 305
MR G LG++N+ + +NGH LP +L R P L+ Q+ W S DM + +P +
Sbjct: 136 MRSGLLGQMNNPSTNGVNGH-LPGDALA-AGRLPDVLAP--QYPWQSNDMSMNMLPPNHS 191
Query: 306 -----QQQNSNRESE-DVEVM 320
+ N+E+E DVEVM
Sbjct: 192 NDFLLEPPGHNKENEDDVEVM 212
>gi|326914168|ref|XP_003203399.1| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Meleagris gallopavo]
Length = 254
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 98/141 (69%), Gaps = 14/141 (9%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI KA K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct: 106 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 165
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR- 305
MR G LG++N+ + +NGH LP +L R P L+ Q+ W S DM + +P +
Sbjct: 166 MRSGLLGQMNNPSTNGVNGH-LPGDALAA-GRLPDVLAP--QYPWQSSDMSMNMLPPNHS 221
Query: 306 -----QQQNSNRESE-DVEVM 320
+ N+E+E DVEVM
Sbjct: 222 NDFMLEPPGHNKENEDDVEVM 242
>gi|410926535|ref|XP_003976734.1| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Takifugu rubripes]
Length = 253
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 93/142 (65%), Gaps = 16/142 (11%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI+KA K +SSEE+IKYAHRIS+SNAVCAPL W PGDPRRPYPTD+E
Sbjct: 105 ATAVYQAKEKLKSIDKARKGNISSEEIIKYAHRISASNAVCAPLNWVPGDPRRPYPTDLE 164
Query: 250 MRVGFLGRLNDSP---LNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP---- 302
MR G LG + + P +NGH LP +L R P L+ + W S DM +G +P
Sbjct: 165 MRSGLLGHMANLPSNGMNGH-LPGDALA-AGRLPDVLTP--HYPWQSSDMSVGILPPHHG 220
Query: 303 ----LDRQQQNSNRESEDVEVM 320
LD N E +DVE M
Sbjct: 221 NDFGLDPPGHNKENE-DDVEAM 241
>gi|334330598|ref|XP_001368858.2| PREDICTED: hypothetical protein LOC100022682 [Monodelphis
domestica]
Length = 535
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 98/141 (69%), Gaps = 14/141 (9%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI+KA K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct: 387 ATAVYQAKEKLKSIDKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 446
Query: 250 MRVGFLGRLNDS---PLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR- 305
MR G LG++N+ +NGH LP +L R P L+ Q+ W S DM + +P +
Sbjct: 447 MRSGLLGQMNNPSTNGVNGH-LPGDALAA-GRLPDVLAP--QYPWQSSDMSVNMLPPNHS 502
Query: 306 -----QQQNSNRESE-DVEVM 320
+ N+E+E DVEVM
Sbjct: 503 NDFMLEPPGHNKENEDDVEVM 523
>gi|410047743|ref|XP_003952439.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
[Pan troglodytes]
Length = 248
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/141 (53%), Positives = 98/141 (69%), Gaps = 14/141 (9%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI KA K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct: 100 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 159
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR- 305
MR G LG++N+ + +NGH LP +L R P L+ Q+ W S DM + +P +
Sbjct: 160 MRSGLLGQMNNPSTNGVNGH-LPGDALAA-GRLPDVLAP--QYPWQSNDMSMNMLPPNHS 215
Query: 306 -----QQQNSNRESE-DVEVM 320
+ N+E+E DVE+M
Sbjct: 216 SDFLLEPPGHNKENEDDVEIM 236
>gi|351709747|gb|EHB12666.1| Mediator of RNA polymerase II transcription subunit 4
[Heterocephalus glaber]
Length = 226
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/141 (52%), Positives = 96/141 (68%), Gaps = 13/141 (9%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
AT ++QAK+KL+SI KA K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRR YPTD+E
Sbjct: 77 ATTVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRLYPTDLE 136
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR- 305
MR G LG++N+ + +NGH LP +L R P L+ Q+ W S DM + +P +
Sbjct: 137 MRSGLLGQMNNPSTNGVNGH-LPGDALAAAGRLPDVLAP--QYPWQSNDMSMNMLPPNHS 193
Query: 306 -----QQQNSNRESE-DVEVM 320
+ N+E+E DVEVM
Sbjct: 194 NDFLLEPPGHNKENEDDVEVM 214
>gi|119629191|gb|EAX08786.1| mediator of RNA polymerase II transcription, subunit 4 homolog
(yeast), isoform CRA_c [Homo sapiens]
Length = 193
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/116 (58%), Positives = 86/116 (74%), Gaps = 7/116 (6%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI KA K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct: 76 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 135
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP 302
MR G LG++N+ + +NGH LP +L R P L+ Q+ W S DM + +P
Sbjct: 136 MRSGLLGQMNNPSTNGVNGH-LPGDALAA-GRLPDVLAP--QYPWQSNDMSMNMLP 187
>gi|224043386|ref|XP_002195662.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
[Taeniopygia guttata]
Length = 306
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 98/141 (69%), Gaps = 14/141 (9%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI KA K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct: 158 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 217
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR- 305
MR G LG++N+ + +NGH LP +L R P L+ Q+ W S DM + +P +
Sbjct: 218 MRSGLLGQMNNPSTNGVNGH-LPGDALA-AGRLPDVLAP--QYPWQSSDMSMNMLPPNHS 273
Query: 306 -----QQQNSNRESE-DVEVM 320
+ N+E+E DVEVM
Sbjct: 274 NDFMLEPPGHNKENEDDVEVM 294
>gi|345325117|ref|XP_001514128.2| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Ornithorhynchus anatinus]
Length = 290
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/141 (52%), Positives = 99/141 (70%), Gaps = 14/141 (9%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI+KA K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct: 142 ATAVYQAKEKLKSIDKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 201
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR- 305
MR G LG++++ + +NGH LP +L R P L+ Q+ W S D+ + +P +
Sbjct: 202 MRSGLLGQMSNPSTNGVNGH-LPGDALAA-GRLPDVLAP--QYPWQSNDLSLNMLPPNHS 257
Query: 306 -----QQQNSNRESE-DVEVM 320
+ N+E+E DVEVM
Sbjct: 258 NDFMLEPPGHNKENEDDVEVM 278
>gi|47208439|emb|CAF91289.1| unnamed protein product [Tetraodon nigroviridis]
Length = 245
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 93/142 (65%), Gaps = 16/142 (11%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI+KA K +SSEE+IKYAHRIS+SNAVCAPL W PGDPRRPYPTD+E
Sbjct: 97 ATAVYQAKEKLRSIDKARKGNISSEEIIKYAHRISASNAVCAPLNWVPGDPRRPYPTDLE 156
Query: 250 MRVGFLGRLNDSP---LNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP---- 302
MR G LG + + P +NGH LP +L R P L+ + W + DM +G +P
Sbjct: 157 MRSGLLGHMANLPSNGMNGH-LPGDALA-AGRLPDVLTP--HYPWQTSDMSVGILPPHHG 212
Query: 303 ----LDRQQQNSNRESEDVEVM 320
LD N E +DVE M
Sbjct: 213 NDFGLDPPGHNKENE-DDVEAM 233
>gi|348524074|ref|XP_003449548.1| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Oreochromis niloticus]
Length = 252
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 138/248 (55%), Gaps = 39/248 (15%)
Query: 104 MSSKNISTGEKLLSLIDDIELVAKKKQEA--------------HNHLQKTVVYFNKN--- 146
M++ ST E+LLS++DD+E+++++ E + + +V +K
Sbjct: 1 MAAAEKSTKERLLSVLDDLEVLSRELIEMLALSRSQKMPQPGEDTQILELLVQRDKEFQE 60
Query: 147 --EVVKQSFRI--EIEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQAKQKLQS 202
EV +Q ++ E++ K+ + + D + + + ATA++QAK+KL+S
Sbjct: 61 LMEVAQQQGKVHQEMQLLEKEVEKRDS----DIQQLQKQLKEAEHILATAVYQAKEKLKS 116
Query: 203 INKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGR---LN 259
I +A K +SSEE+IKYAHRIS+SNAVCAPL W PGDPRRPYPTD+EMR G LG L+
Sbjct: 117 IERARKGSISSEEIIKYAHRISASNAVCAPLNWVPGDPRRPYPTDLEMRSGMLGHMANLS 176
Query: 260 DSPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP------LDRQQQNSNRE 313
+ +NGH LP +L R P L+ + W S D+ +G +P + N+E
Sbjct: 177 TNGVNGH-LPGDALA-AGRLPDVLT--PHYPWQSSDVSVGMLPPHHGNDFGLEPPGHNKE 232
Query: 314 SE-DVEVM 320
+E DVE M
Sbjct: 233 NEDDVEAM 240
>gi|432931619|ref|XP_004081703.1| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Oryzias latipes]
Length = 353
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 133/242 (54%), Gaps = 39/242 (16%)
Query: 110 STGEKLLSLIDDIELVAKKKQE----AHNH---------------LQKTVVYFNKNEVVK 150
ST E+LLS++DD+E+++++ E A N +Q+ + EV +
Sbjct: 108 STKERLLSVLDDLEVLSRELIEMLALARNQKVPQPGEDTQILELLVQRDKEFQELMEVAQ 167
Query: 151 QSFRI--EIEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQAKQKLQSINKANK 208
Q +I E++ K+ + + D + + + ATA++QAK+KL SI KA K
Sbjct: 168 QQGKIHQEMQLLEKEVEKRDS----DIQQLQKQLKEAEHILATAVYQAKEKLASIEKAKK 223
Query: 209 RPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSP---LNG 265
VSSEE+IKYAHRIS+SNAVCAPL W PGDPRRPYPTD+EMR G LG + + P +NG
Sbjct: 224 GSVSSEEIIKYAHRISASNAVCAPLNWVPGDPRRPYPTDLEMRSGILGHMANLPSNGVNG 283
Query: 266 HLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP------LDRQQQNSNRESE-DVE 318
H LP +L R P L+ + W S D+ G +P + N+E+E DVE
Sbjct: 284 H-LPGDALA-AGRLPDILT--PHYPWQSSDVSAGMLPPHHGNDFSLEPPGHNKENEDDVE 339
Query: 319 VM 320
M
Sbjct: 340 AM 341
>gi|308321993|gb|ADO28134.1| mediator of RNA polymerase II transcription subunit 4 [Ictalurus
furcatus]
Length = 252
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 128/240 (53%), Gaps = 34/240 (14%)
Query: 110 STGEKLLSLIDDIELVAK------------KKQEAHNHLQKTVVYFNKNEVVKQSFRIEI 157
ST EKLLS ++DIE++++ K + Q + +++ ++ R +
Sbjct: 6 STKEKLLSALNDIEVLSRELVEMLALSRSQKLPQPGEDTQVLELLVQRDKEFQELMRTAL 65
Query: 158 ------EEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPV 211
EE K K D + + + ATA++QAK+KL+SI KA K +
Sbjct: 66 RQGRTHEEMQKLEKEVEKRDG-DIQLLQKQLKEAEHILATAVYQAKEKLKSIEKARKGSI 124
Query: 212 SSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSP---LNGHLL 268
SSEE+IKYAHRIS+SNAVCAPL W PGDPRRPYPTD+EMR G LG + + P +NGH L
Sbjct: 125 SSEEIIKYAHRISASNAVCAPLNWVPGDPRRPYPTDLEMRSGMLGHMCNLPTNGVNGH-L 183
Query: 269 PQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP-------LDRQQQNSNRESE-DVEVM 320
P +L R P L+ Q+ W S D+ + P L + N+E+E DVE M
Sbjct: 184 PGDALA-AGRLPDVLAP--QYPWQSADVAMAMPPPSHHGNDLGLELPGHNKENEDDVEAM 240
>gi|156550424|ref|XP_001600352.1| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Nasonia vitripennis]
Length = 251
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 137/243 (56%), Gaps = 41/243 (16%)
Query: 110 STGEKLLSLIDDIELVAKKKQE-------------AHNHLQKTVVYFNK---NEVVKQSF 153
ST + LLS++DDIE+++K+ E H +L + ++Y +K + +VK
Sbjct: 5 STRDVLLSIVDDIEMISKELIENIIAEKHSKLSTADHTNLIELLMYKDKELKSVLVKADE 64
Query: 154 RIEIEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
+ +I + + K + + + + ATAI+Q+KQKL+SI ANKRPVSS
Sbjct: 65 QAKINQKMEALKAEVDYQDQVIQQLQRQLKETEQILATAIYQSKQKLRSIATANKRPVSS 124
Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQSL 273
EELIK+A +S++NA+CAPLTWQ GDPRRPYP +IEMR+G+L +L L L +Q
Sbjct: 125 EELIKFA--LSTTNAMCAPLTWQQGDPRRPYPIEIEMRMGWLQQLE---LYNTSLTRQMF 179
Query: 274 G-------DLHRT--PSELSQQNQFSWH-SGDMHIG------NVPLDRQQQNSNRESEDV 317
G DLH P + F+WH SGD+H+ +VP+ + R+SED+
Sbjct: 180 GLQSSFSSDLHMPTEPPVAQASSHFAWHPSGDLHMSVGAGQRSVPITAHK----RKSEDI 235
Query: 318 EVM 320
E+M
Sbjct: 236 EMM 238
>gi|62955741|ref|NP_001017883.1| mediator of RNA polymerase II transcription subunit 4 [Danio rerio]
gi|82177981|sp|Q561X3.1|MED4_DANRE RecName: Full=Mediator of RNA polymerase II transcription subunit
4; AltName: Full=Mediator complex subunit 4
gi|62531177|gb|AAH92965.1| Mediator complex subunit 4 [Danio rerio]
gi|182890428|gb|AAI64333.1| Med4 protein [Danio rerio]
Length = 254
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 96/141 (68%), Gaps = 14/141 (9%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI+KA K +SS+E+IKYAHRIS+SNAVCAPL W PGDPRRPYPTD+E
Sbjct: 106 ATAVYQAKEKLKSIDKARKGSISSKEIIKYAHRISASNAVCAPLNWVPGDPRRPYPTDLE 165
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP---- 302
MR G LG +++ + +NGH LP +L R P L+ Q+ W S D+ +G +P
Sbjct: 166 MRSGMLGNMSNMSTNGVNGH-LPGDALA-AGRLPDVLTP--QYPWQSTDVSMGILPPHHG 221
Query: 303 --LDRQQQNSNRESE-DVEVM 320
+ N+E+E DVE M
Sbjct: 222 NDFGLEPPGHNKENEDDVEAM 242
>gi|391334215|ref|XP_003741502.1| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Metaseiulus occidentalis]
Length = 248
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 129/235 (54%), Gaps = 28/235 (11%)
Query: 110 STGEKLLSLIDDIELVAK---------KKQEA----HNHLQKTVVYFNK--NEVVKQSFR 154
T KLL +IDD+E++AK K Q+ H HL + +V ++ ++++Q+ +
Sbjct: 5 GTKGKLLRVIDDMEIIAKELVDNFLAPKSQKLSSAEHYHLGEILVAKDQEFKDLLQQARQ 64
Query: 155 IE-IEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
E +EE + + +D H + + + ATAIFQAKQKL+SI KA + VSS
Sbjct: 65 QEKVEEVIEALQEEVDRQDKDIHTLQSNLKEAENLLATAIFQAKQKLESIKKAQENQVSS 124
Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQSL 273
EELIKYAHRIS+S+AV AP WQ GD RRPYPTDIEMR G LGR+ D PL P+ L
Sbjct: 125 EELIKYAHRISASSAVAAPHNWQQGDVRRPYPTDIEMRQGSLGRMCDLPLPPAEGPRGIL 184
Query: 274 GDLHRTPSELSQQNQFSWHSGDM--------HIGNVPLDRQQQNSNRESEDVEVM 320
TP + FSW G ++ ++ L Q ++EDVEVM
Sbjct: 185 EGSLGTPVG-GPPSGFSWQLGSTLSSQDIKPNLSSLAL---QTGLETKNEDVEVM 235
>gi|213511791|ref|NP_001134632.1| mediator of RNA polymerase II transcription subunit 4 [Salmo salar]
gi|209734818|gb|ACI68278.1| Mediator of RNA polymerase II transcription subunit 4 [Salmo salar]
Length = 259
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 111/185 (60%), Gaps = 22/185 (11%)
Query: 104 MSSKNISTGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVK---QSFRIEIE 158
M+ + ST E+LLS++DD+E+++++ E A + QK ++++ Q R E +
Sbjct: 1 MAVTDKSTKERLLSVLDDLEVLSRELIEMLALSRSQKLPQGGEDTQILELLVQRDR-EFQ 59
Query: 159 EFTKKSKNASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINK 205
E ++ E D + + + ATA++QAK+KL+SI+K
Sbjct: 60 ELMGVAQEQGKVHQEMQVLEKEVEKRDCDIQQLQKQLKEAEHILATAVYQAKEKLKSIDK 119
Query: 206 ANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSP--- 262
A K +SSEE+IKYAHRIS+SNAVCAPL W PGDPRRPYPTD+EMR G LG +++ P
Sbjct: 120 ARKGSISSEEIIKYAHRISASNAVCAPLNWVPGDPRRPYPTDLEMRSGMLGHMSNLPTNG 179
Query: 263 LNGHL 267
+NGHL
Sbjct: 180 VNGHL 184
>gi|198423760|ref|XP_002127402.1| PREDICTED: similar to Mediator of RNA polymerase II transcription
subunit 4 (Mediator complex subunit 4) (Vitamin D3
receptor-interacting protein complex 36 kDa component)
(DRIP36) (Activator-recruited cofactor 36 kDa component)
(ARC36) (TRAP/SMCC/PC2 subunit... [Ciona intestinalis]
Length = 259
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 128/248 (51%), Gaps = 46/248 (18%)
Query: 109 ISTGEKLLSLIDDIELVAKK---------------------KQEAHNHL----QKTVVYF 143
+ST ++LLSL+DD++LV ++ + E +H+ Q T +
Sbjct: 5 VSTKKQLLSLVDDVDLVIRQLFDTLSQQSSQNTVVNQVGSGESETQSHVMDVGQLTDLLL 64
Query: 144 NKN-------EVVKQSFRIEIEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQA 196
KN EV Q ++E++ K ++ + + + + + TA+ QA
Sbjct: 65 QKNKKLADLTEVACQQQKLEVK--VKATRAEIAMKDTEIKCLQKHLKAAEQLLGTALHQA 122
Query: 197 KQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLG 256
K+KL+S ++ANK V SE++IKYAH+IS+S + APL W PGD RRPYP DIEMR G+LG
Sbjct: 123 KEKLKSFDQANKGSVMSEDIIKYAHKISASCSTAAPLNWTPGDQRRPYPQDIEMRCGWLG 182
Query: 257 RLNDSPLN---GHLLPQQSLG-DLHRTPSELSQQNQFSWHSGDMHIGNVPLDRQQQNSNR 312
++N+S +N L P LG D + PS S +Q W GN +D R
Sbjct: 183 QINNSDMNVKDPMLKPPAQLGTDGIQMPS-FSSNSQ--WQK-----GNQSMDMSTFTDGR 234
Query: 313 ESEDVEVM 320
+EDV+VM
Sbjct: 235 STEDVDVM 242
>gi|156398399|ref|XP_001638176.1| predicted protein [Nematostella vectensis]
gi|156225294|gb|EDO46113.1| predicted protein [Nematostella vectensis]
Length = 441
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 54/83 (65%), Positives = 62/83 (74%)
Query: 192 AIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMR 251
A+FQAK+KL +I KANK VSSEELIKYAH+ISSSNAV AP TW GDPRRPYP DIEMR
Sbjct: 277 ALFQAKKKLTAIEKANKGSVSSEELIKYAHQISSSNAVEAPTTWMAGDPRRPYPLDIEMR 336
Query: 252 VGFLGRLNDSPLNGHLLPQQSLG 274
G LGRL + +P ++G
Sbjct: 337 SGLLGRLGEGVAMETEIPTSTVG 359
>gi|443734328|gb|ELU18352.1| hypothetical protein CAPTEDRAFT_225323 [Capitella teleta]
Length = 270
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 106/177 (59%), Gaps = 14/177 (7%)
Query: 110 STGEKLLSLIDDIELVAKK--------KQEAHNHLQKTV-VYFNKNEVVKQSFRIEIEEF 160
ST ++LLS +DD+E+V+K+ Q + + + + + K++ ++ + E+
Sbjct: 5 STRQRLLSSLDDVEIVSKELLKVLTAPTQSDDSGMDQLIQLLVQKDKEIQTTLTTAKEQG 64
Query: 161 TKKSK-NASTAGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSSEE 215
+ K A A E D + +S +TAI+QAK KL+++ +AN R +SSE+
Sbjct: 65 KLQRKYEALKAEVENRDQDIRQLQKSLKDVESTLSTAIYQAKAKLKAVTQANGRKISSED 124
Query: 216 LIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQS 272
LIKYAH+IS+SNAV AP TW GDPRRPYPT+I+MR+G L +L D ++ L QQ+
Sbjct: 125 LIKYAHKISASNAVAAPSTWAIGDPRRPYPTEIDMRLGILAKLGDPTISNQALQQQA 181
>gi|82658306|ref|NP_001032512.1| uncharacterized protein LOC641496 [Danio rerio]
Length = 227
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 73/109 (66%), Gaps = 5/109 (4%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
AT ++QAKQKL+SINKA+K+PVS E+L+K AHRIS+SN VCAPL W+ GD RRPYPTD +
Sbjct: 96 ATVVYQAKQKLESINKADKKPVSFEDLVKLAHRISASNGVCAPLAWKTGDLRRPYPTDKD 155
Query: 250 MRVGFLGRLNDSPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHI 298
M+ G L R+ D N Q + + R S + + +SW S HI
Sbjct: 156 MKSGLLFRMGDYSGNSS----QGVTEFVRNDSAI-EAGTYSWFSSTPHI 199
>gi|291241531|ref|XP_002740664.1| PREDICTED: mediator complex subunit 4-like [Saccoglossus
kowalevskii]
Length = 256
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 65/79 (82%), Gaps = 2/79 (2%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATAI+QAK+KL++I +A+ + ++LIKYAH IS++N+V AP++W PGDPRRPYPTD+E
Sbjct: 101 ATAIYQAKEKLKAIEQASTHSIPVDDLIKYAHHISATNSVTAPMSWAPGDPRRPYPTDME 160
Query: 250 MRVGFLGRLNDSP--LNGH 266
MR+G LG++++ P NGH
Sbjct: 161 MRMGILGKMSNLPTVTNGH 179
>gi|90084982|dbj|BAE91232.1| unnamed protein product [Macaca fascicularis]
Length = 225
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 91/142 (64%), Gaps = 15/142 (10%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNA-VCAPLTWQPGDPRRPYPTDI 248
ATA++QAK+KL+SI KA K +SSEE+IKYAHRIS+SNA +C+ G P RPYPTD+
Sbjct: 76 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNACMCSTDPGFQGTPGRPYPTDL 135
Query: 249 EMRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR 305
EMR G LG++N+ + +NGH LP +L R P L+ Q+ W S DM + +P +
Sbjct: 136 EMRSGLLGQMNNPSTNGVNGH-LPGDALA-AGRLPDVLAP--QYPWQSNDMSMNMLPPNH 191
Query: 306 ------QQQNSNRESE-DVEVM 320
+ N+E+E DVE+M
Sbjct: 192 SSDFLLEPPGHNKENEDDVEIM 213
>gi|170052879|ref|XP_001862422.1| mediator complex [Culex quinquefasciatus]
gi|167873644|gb|EDS37027.1| mediator complex [Culex quinquefasciatus]
Length = 323
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 70/95 (73%), Gaps = 6/95 (6%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
AT+IFQA+QKL S KA K+PVSS+ELIK+A R ++SNA+CAPLTWQ GD RRPYPTD +
Sbjct: 209 ATSIFQARQKLTSFAKATKQPVSSDELIKFADRKNASNAICAPLTWQQGDQRRPYPTDRD 268
Query: 250 MRVGF---LGRLNDSPLNGHLLP--QQSLGDLHRT 279
G LG +D +NGH P Q SLG+++RT
Sbjct: 269 A-AGLPLQLGPNSDLTINGHQNPARQNSLGEINRT 302
>gi|170068204|ref|XP_001868777.1| mediator complex [Culex quinquefasciatus]
gi|167864286|gb|EDS27669.1| mediator complex [Culex quinquefasciatus]
Length = 229
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 65/90 (72%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
AT+IFQA+QKL S KA KRPVSS+ELIK+AHR ++SNA+CAPLTWQ GD RRPYPTD +
Sbjct: 131 ATSIFQARQKLTSFAKATKRPVSSDELIKFAHRKNASNAICAPLTWQQGDQRRPYPTDRD 190
Query: 250 MRVGFLGRLNDSPLNGHLLPQQSLGDLHRT 279
L D + + Q SLG+++RT
Sbjct: 191 AAGLPLQFRPDLQRDQNPATQNSLGEINRT 220
>gi|170061025|ref|XP_001866060.1| mediator complex subunit 4 [Culex quinquefasciatus]
gi|167879297|gb|EDS42680.1| mediator complex subunit 4 [Culex quinquefasciatus]
Length = 220
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 91/158 (57%), Gaps = 37/158 (23%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLT-WQPGDPRRPYPTDI 248
AT IFQA+QKL S KA KRPVSS+ELIK+AHR ++SNA+CAPLT G RR
Sbjct: 60 ATPIFQARQKLTSFAKATKRPVSSDELIKFAHRKNASNAICAPLTETSAGHTRR-----T 114
Query: 249 EMRVGFLGRLNDSPLNGHLLP--QQSLGDLHRTPSE------------------LSQQNQ 288
EMR+GFL +D +NGH P Q SL +++RT + +S QNQ
Sbjct: 115 EMRLGFLCN-SDLTINGHQNPASQNSLCEINRTGAAGGSGIIPGGSFGGIGEITVSAQNQ 173
Query: 289 FSWH-SGDMHI-----GNVPLDRQQQNSNRESEDVEVM 320
F+WH S ++H+ ++PLD + +DVEVM
Sbjct: 174 FAWHLSVELHMTMGGGSSIPLDTRAGG----QDDVEVM 207
>gi|170062576|ref|XP_001866730.1| mediator complex [Culex quinquefasciatus]
gi|167880464|gb|EDS43847.1| mediator complex [Culex quinquefasciatus]
Length = 126
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/58 (75%), Positives = 51/58 (87%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTD 247
AT+IFQA+QKL S KA KRPVSS+ELIK+AHR ++SNA+CAPLTWQ GD RRPYPTD
Sbjct: 40 ATSIFQARQKLTSFAKATKRPVSSDELIKFAHRKNASNAICAPLTWQQGDQRRPYPTD 97
>gi|170050415|ref|XP_001861301.1| mediator complex [Culex quinquefasciatus]
gi|167872035|gb|EDS35418.1| mediator complex [Culex quinquefasciatus]
Length = 274
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 64/90 (71%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
AT+IFQA+QKL S KA KRPVSS+ELIK+AHR ++SNA+CAPLTWQ GD RPYPTD +
Sbjct: 85 ATSIFQARQKLPSFAKATKRPVSSDELIKFAHRKNASNAICAPLTWQQGDQDRPYPTDRD 144
Query: 250 MRVGFLGRLNDSPLNGHLLPQQSLGDLHRT 279
L D + + Q S+G+++RT
Sbjct: 145 AAGLPLQFRPDLQRDQNPATQNSIGEINRT 174
>gi|170039060|ref|XP_001847364.1| mediator complex [Culex quinquefasciatus]
gi|167862673|gb|EDS26056.1| mediator complex [Culex quinquefasciatus]
Length = 220
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 90/157 (57%), Gaps = 38/157 (24%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLT-WQPGDPRRPYPTDI 248
AT+IFQA+QKL S KA KRPV S+ELIK+AHR +SNA+CAPLT G RR
Sbjct: 63 ATSIFQARQKLTSFAKATKRPVLSDELIKFAHRKIASNAICAPLTETSAGHTRR-----T 117
Query: 249 EMRVGFLGRLNDSPLNGHLLP--QQSLGDLHRTPSE-----------------LSQQNQF 289
EMR+GF L +S +NGH P Q + G+++RT + +S QNQF
Sbjct: 118 EMRLGF---LCNSAINGHQNPASQNNPGEINRTGAAGGSEITPGGFGGIGEITVSAQNQF 174
Query: 290 SWH-SGDMHI-----GNVPLDRQQQNSNRESEDVEVM 320
+WH S ++H+ ++PLD + +DVEVM
Sbjct: 175 AWHLSVELHMTMGGGSSIPLDTRAGG----QDDVEVM 207
>gi|449682059|ref|XP_002157377.2| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Hydra magnipapillata]
Length = 241
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 78/138 (56%), Gaps = 16/138 (11%)
Query: 122 IELVAKKKQEAHNHLQKTVVYFNKNEVVKQSFRIEIEEFTKKSKNAST--AGFEDAHGVW 179
+E + ++ + LQK + ++++VKQ EE KK + S + ++A +
Sbjct: 29 VEKLLEQDNDLQETLQKAIKQLEQHKLVKQL----QEEIKKKDQELSLFHSQLKEAENIL 84
Query: 180 ESASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGD 239
ATA+ QAK+KL + +A VS EELIK+A RISS N+V AP W PGD
Sbjct: 85 ----------ATALHQAKKKLLTAEQAKSSSVSCEELIKFAFRISSGNSVEAPPGWVPGD 134
Query: 240 PRRPYPTDIEMRVGFLGR 257
PRRPYP DIEMR G LG+
Sbjct: 135 PRRPYPLDIEMRCGALGQ 152
>gi|196010475|ref|XP_002115102.1| hypothetical protein TRIADDRAFT_58906 [Trichoplax adhaerens]
gi|190582485|gb|EDV22558.1| hypothetical protein TRIADDRAFT_58906 [Trichoplax adhaerens]
Length = 231
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 80/152 (52%), Gaps = 29/152 (19%)
Query: 121 DIELVAKKKQEAHNHL---QKTVVYFNK----NEVVKQSFRIEIEEFTKKSKNASTAGFE 173
+I+L+A K +E L Q + +NK NE V Q R+ I + K K A ++
Sbjct: 37 EIDLIANKDEEFRKALVDAQGKIEVYNKIRKCNEAVVQQDRV-IVQLMDKLKQAESSLM- 94
Query: 174 DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPL 233
+AI AK+ L R V+SE+LIKYA+ ISS++AVCAP
Sbjct: 95 -----------------SAIENAKEVLPC---EESRSVNSEDLIKYAYEISSNHAVCAPT 134
Query: 234 TWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNG 265
WQ GD RRPYP DIEMR G LG+L + +NG
Sbjct: 135 NWQQGDSRRPYPIDIEMRAGILGKLTEYNVNG 166
>gi|170032957|ref|XP_001844346.1| mediator complex [Culex quinquefasciatus]
gi|167873303|gb|EDS36686.1| mediator complex [Culex quinquefasciatus]
Length = 238
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/58 (72%), Positives = 49/58 (84%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTD 247
AT+IFQA+QKL S KA KRPV S+ELIK+AHR +SNA+CAPLTWQ GD R+PYPTD
Sbjct: 154 ATSIFQARQKLTSFAKATKRPVLSDELIKFAHRKIASNAICAPLTWQQGDQRQPYPTD 211
>gi|339236933|ref|XP_003380021.1| mediator of RNA polymerase II transcription subunit 4 [Trichinella
spiralis]
gi|316977235|gb|EFV60363.1| mediator of RNA polymerase II transcription subunit 4 [Trichinella
spiralis]
Length = 215
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 98/171 (57%), Gaps = 21/171 (12%)
Query: 110 STGEKLLSLIDDIELVAKKKQEAHNHLQKTVVY--FNKNEVVKQSFRIE---IEEFTKKS 164
S +LL ++DD+EL+ ++ E +++ ++ F ++++ + F+++ +EE K +
Sbjct: 12 SVRRQLLDVVDDLELICRQVSEILTVSKESRLHHDFKLSDLI-ELFKVKEDHLEELLKVA 70
Query: 165 KN-----------ASTAGFEDAHGVWESASGSNKNEAT---AIFQAKQKLQSINKANKRP 210
K S D + + + ++E+T AIFQA KL+SI ++ R
Sbjct: 71 KMQTERQRLIDALESEIAVRDEY-IERLRTCLIESESTLTNAIFQANLKLKSIAQSELRK 129
Query: 211 VSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDS 261
VS EE+I+YAHRIS++ +V AP+ WQ GD RP+P DIEMR G+L R+ S
Sbjct: 130 VSPEEVIRYAHRISAAYSVSAPMNWQVGDIERPFPLDIEMRSGWLARVTGS 180
>gi|358253274|dbj|GAA52746.1| mediator of RNA polymerase II transcription subunit 4, partial
[Clonorchis sinensis]
Length = 304
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 57/80 (71%), Gaps = 3/80 (3%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
+TA++ ++QKL ++ KA K PV +EL++++HRIS+++ V AP W GDPRRPYP E
Sbjct: 75 STALYYSRQKLDTMVKAVKNPVDVDELVRFSHRISATHGVSAPDNWVQGDPRRPYPNREE 134
Query: 250 MRVGFLGRLNDSPLNGHLLP 269
+R G+LG L+D NGH P
Sbjct: 135 IRRGYLGHLDD---NGHFRP 151
>gi|148703909|gb|EDL35856.1| mediator of RNA polymerase II transcription, subunit 4 homolog
(yeast), isoform CRA_b [Mus musculus]
Length = 185
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 86/147 (58%), Gaps = 17/147 (11%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRIE--IEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ + +E K +
Sbjct: 33 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQLEEENQVLELLIHRDGDFQELMKLAL 92
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 93 NQGKVHHEMQALEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 152
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGD 239
SEE+IKYAHRIS+SNAVCAPLTW PG+
Sbjct: 153 SEEIIKYAHRISASNAVCAPLTWVPGN 179
>gi|26347115|dbj|BAC37206.1| unnamed protein product [Mus musculus]
Length = 177
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 86/147 (58%), Gaps = 17/147 (11%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRIE--IEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ + +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQLEEENQVLELLIHRDGDFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKVHHEMQALEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGD 239
SEE+IKYAHRIS+SNAVCAPLTW PG+
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGN 171
>gi|256079864|ref|XP_002576204.1| hypothetical protein [Schistosoma mansoni]
Length = 237
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 95/170 (55%), Gaps = 14/170 (8%)
Query: 104 MSSKNISTGEKLL-------SLIDDIELVAKKKQEAHNHLQKTVVYFNKNEVVKQSFR-I 155
MSS+ +S +KL+ SL+ DI L A K+++ + K++ +K++++ I
Sbjct: 1 MSSR-VSLKQKLIGQLEDADSLLRDI-LSAASKKKSVTLFPLIELLLEKDQQLKETYKEI 58
Query: 156 EIEEFTKKSKNASTAGFEDAHGVWESASGSNKNE----ATAIFQAKQKLQSINKANKRPV 211
E+ +K + A + +S K +TA++ ++QKL S+ A K P+
Sbjct: 59 EVYNEIQKKIDLLKADCSKSDKQIQSCQLHLKKTEVILSTALYYSRQKLDSMTTAVKNPI 118
Query: 212 SSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDS 261
EEL++++HRIS+++ V AP W GDPRRPYP E+R G+LG ++D+
Sbjct: 119 DMEELVRFSHRISATHGVIAPDNWTQGDPRRPYPNKEEIRRGYLGHIDDA 168
>gi|405964733|gb|EKC30182.1| Mediator of RNA polymerase II transcription subunit 4 [Crassostrea
gigas]
Length = 205
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 84/151 (55%), Gaps = 18/151 (11%)
Query: 108 NISTGEKLLSLIDDIELVAK------------KKQEAHNHLQKTVVYFNKNEVVKQSFRI 155
+IST +KL SLI+D+EL++K +K +A + + + K++ +K++ ++
Sbjct: 3 DISTKQKLYSLIEDVELISKELFEVAATPKSQQKPDAMDSITLVELVTMKDKEIKETLKL 62
Query: 156 EIEEFTKKSKNASTAGFEDAHGVWESASGSNKNEA-----TAIFQAKQKLQSINKANKRP 210
E+ + D N EA TAI+QAKQKL +IN+AN R
Sbjct: 63 AAEQAEIQKTIDELRTEVDKRDAEIKHLQKNLKEAETILSTAIYQAKQKLTAINQANNRK 122
Query: 211 VSSEELIKYAHRISSSNAVCAPLTWQP-GDP 240
+SSEELIK+AHRIS+SNAV +P TW P G P
Sbjct: 123 ISSEELIKFAHRISASNAVASPPTWMPEGTP 153
>gi|353231007|emb|CCD77425.1| hypothetical protein Smp_048970.1 [Schistosoma mansoni]
Length = 412
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 94/169 (55%), Gaps = 12/169 (7%)
Query: 104 MSSKNISTGEKLLSLIDDIE------LVAKKKQEAHNHLQKTVVYFNKNEVVKQSFR-IE 156
MSS+ +S +KL+ ++D + L A K+++ + K++ +K++++ IE
Sbjct: 1 MSSR-VSLKQKLIGQLEDADSLLRDILSAASKKKSVTLFPLIELLLEKDQQLKETYKEIE 59
Query: 157 IEEFTKKSKNASTAGFEDAHGVWESASGSNKNE----ATAIFQAKQKLQSINKANKRPVS 212
+ +K + A + +S K +TA++ ++QKL S+ A K P+
Sbjct: 60 VYNEIQKKIDLLKADCSKSDKQIQSCQLHLKKTEVILSTALYYSRQKLDSMTTAVKNPID 119
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDS 261
EEL++++HRIS+++ V AP W GDPRRPYP E+R G+LG ++D+
Sbjct: 120 MEELVRFSHRISATHGVIAPDNWTQGDPRRPYPNKEEIRRGYLGHIDDA 168
>gi|226483341|emb|CAX73971.1| Mediator complex subunit 4 [Schistosoma japonicum]
Length = 355
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 53/72 (73%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
+TA++ ++QKL S+ A K P+ E+L++++HRIS+++ V AP W GDPRRPYP E
Sbjct: 40 STALYYSRQKLDSMTTAVKNPIDMEDLVRFSHRISATHGVIAPDNWTQGDPRRPYPNKEE 99
Query: 250 MRVGFLGRLNDS 261
+R G+LG ++D+
Sbjct: 100 IRRGYLGHIDDT 111
>gi|71998880|ref|NP_494905.2| Protein MDT-4 [Caenorhabditis elegans]
gi|74966854|sp|Q23523.2|MED4_CAEEL RecName: Full=Mediator of RNA polymerase II transcription subunit
4; AltName: Full=Mediator complex subunit 4
gi|351064737|emb|CCD73223.1| Protein MDT-4 [Caenorhabditis elegans]
Length = 334
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 45/64 (70%)
Query: 192 AIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMR 251
+ F A QKL+ + +A RPV+SE LIK AH+IS N+V APLTWQ GDP RP+P + E R
Sbjct: 108 SCFHANQKLKQMKEAELRPVNSEMLIKLAHQISKHNSVSAPLTWQMGDPSRPFPQEHEFR 167
Query: 252 VGFL 255
G L
Sbjct: 168 AGHL 171
>gi|313229300|emb|CBY23886.1| unnamed protein product [Oikopleura dioica]
Length = 245
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 89/158 (56%), Gaps = 15/158 (9%)
Query: 113 EKLLSLIDDIELV-------AKKKQEAHNHLQKTVVYFNKNEVVKQSFRI-EIEEFTKKS 164
++LL L+D++E + ++ +A N L+ + K++ + +S RI +I+ +
Sbjct: 7 DQLLQLVDEVEKLTTEVFEAVQEGNQAENLLE---LLMKKDQQLTESLRIADIQLQLHQQ 63
Query: 165 KNASTAGFEDAHG----VWESASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYA 220
A E +G + S ++ + A+ QAK++L+ I +A + +++E+++KY+
Sbjct: 64 ITDCNAQIELYNGRITRYQKKLSEASDSLLPALSQAKKRLKIIQEAEDKKINAEDIVKYS 123
Query: 221 HRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRL 258
H++ + +A AP W PGDPRRPYPT+ +MR G L L
Sbjct: 124 HKLCAHHANIAPTGWLPGDPRRPYPTEHDMRAGILHHL 161
>gi|341884942|gb|EGT40877.1| hypothetical protein CAEBREN_12102 [Caenorhabditis brenneri]
gi|341897733|gb|EGT53668.1| hypothetical protein CAEBREN_08307 [Caenorhabditis brenneri]
Length = 335
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 46/64 (71%)
Query: 192 AIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMR 251
+ F A QK++ + +A+ RPV+SE LIK AH+IS+ N++ AP TWQ GDP RP+P + E R
Sbjct: 108 SCFHANQKVKQVKEAHLRPVNSEVLIKLAHQISAHNSISAPFTWQMGDPSRPFPQETEFR 167
Query: 252 VGFL 255
G L
Sbjct: 168 AGHL 171
>gi|240990180|ref|XP_002404342.1| mediator of RNA polymerase II transcription subunit, putative
[Ixodes scapularis]
gi|215491540|gb|EEC01181.1| mediator of RNA polymerase II transcription subunit, putative
[Ixodes scapularis]
Length = 154
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 61/102 (59%), Gaps = 19/102 (18%)
Query: 238 GDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQS-LGDL-----HRTPSELSQQNQFSW 291
GD RRPYPTDIEMR G+LGRL+D PL+G L QQ LGDL H + L Q FSW
Sbjct: 44 GDQRRPYPTDIEMRQGYLGRLSDLPLSGPPLQQQGNLGDLSAARGHHDQNPLGQ--SFSW 101
Query: 292 HSGDMHIGNV-PLDRQQQNS------NRESEDVEVMSTDSSS 326
G G++ P NS +E+EDVEVMSTDSSS
Sbjct: 102 QIG----GDIKPPMSSNHNSVGMDTKAKENEDVEVMSTDSSS 139
>gi|284018162|sp|Q621Z7.3|MED4_CAEBR RecName: Full=Mediator of RNA polymerase II transcription subunit
4; AltName: Full=Mediator complex subunit 4
Length = 334
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 46/64 (71%)
Query: 192 AIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMR 251
+ F A QK++ +N+A RPV+SE LIK +H+IS N+V APLTWQ GDP RP+P + E R
Sbjct: 108 SCFHANQKVKKMNEAALRPVNSETLIKLSHQISKHNSVSAPLTWQIGDPSRPFPQEHEFR 167
Query: 252 VGFL 255
G L
Sbjct: 168 TGQL 171
>gi|268530982|ref|XP_002630617.1| C. briggsae CBR-MDT-4 protein [Caenorhabditis briggsae]
Length = 597
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 46/64 (71%)
Query: 192 AIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMR 251
+ F A QK++ +N+A RPV+SE LIK +H+IS N+V APLTWQ GDP RP+P + E R
Sbjct: 108 SCFHANQKVKKMNEAALRPVNSETLIKLSHQISKHNSVSAPLTWQIGDPSRPFPQEHEFR 167
Query: 252 VGFL 255
G L
Sbjct: 168 TGQL 171
>gi|308493721|ref|XP_003109050.1| CRE-MDT-4 protein [Caenorhabditis remanei]
gi|308247607|gb|EFO91559.1| CRE-MDT-4 protein [Caenorhabditis remanei]
Length = 335
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 84/171 (49%), Gaps = 20/171 (11%)
Query: 104 MSSKNISTGEKLLSLIDDIELVAKKKQEAHNHLQKTVVYFN-------------KNEVVK 150
M S S + LL DD+E V K + + +K+V+ N K E++K
Sbjct: 2 MRSDERSLRDLLLESADDLEHVLKMIVDTLINREKSVMLKNGESVTNIIKLFDSKQEIIK 61
Query: 151 QSFRIEIEEFTKKSKNAST--AGFEDAHGVWESASGSNKNEATAI----FQAKQKLQSIN 204
+ ++ E+ ++ T E V + + K A+ F A KL+ ++
Sbjct: 62 TLLK-KVPEYQERENLIRTLKGHVEKRDAVIQQVENNLKACEVALTRSCFHANLKLKQMS 120
Query: 205 KANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFL 255
+A RPV+SE LIK AH+IS N+V APLTWQ GDP RP+P + E R G L
Sbjct: 121 EAALRPVNSEILIKMAHQISKHNSVSAPLTWQIGDPSRPFPQEHEFRAGHL 171
>gi|324519716|gb|ADY47458.1| Mediator of RNA polymerase II transcription subunit 4 [Ascaris
suum]
Length = 302
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 50/64 (78%)
Query: 192 AIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMR 251
A++QA K++S+ +A + V+SE++I++A++IS + +V APL W+ GDP RP+PT++E+R
Sbjct: 101 AVYQAGIKIKSVRQAEAKKVNSEQVIRFANQISKTYSVAAPLFWRIGDPSRPFPTEMELR 160
Query: 252 VGFL 255
V L
Sbjct: 161 VSSL 164
>gi|443702097|gb|ELU00258.1| hypothetical protein CAPTEDRAFT_217641 [Capitella teleta]
Length = 188
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 15/83 (18%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
+TAI+QAK KL+++ +AN R +SSE+LIKYA + + RPYPT+I+
Sbjct: 112 STAIYQAKAKLKAVTQANGRKISSEDLIKYARSVLAM---------------RPYPTEID 156
Query: 250 MRVGFLGRLNDSPLNGHLLPQQS 272
MR+G L +L D ++ L QQ+
Sbjct: 157 MRLGILAKLGDPTISNQALQQQA 179
>gi|170045419|ref|XP_001850307.1| mediator complex [Culex quinquefasciatus]
gi|167868476|gb|EDS31859.1| mediator complex [Culex quinquefasciatus]
Length = 337
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 76/156 (48%), Gaps = 52/156 (33%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
AT+IFQA+QKL S KA KRPV S+ELIK G RR E
Sbjct: 196 ATSIFQARQKLTSFAKATKRPVLSDELIKET---------------SAGHTRR-----TE 235
Query: 250 MRVGFLGRLNDSPLNGHLLP--QQSLGDLHRTPSE-----------------LSQQNQFS 290
MR+GF L +S +NGH P Q + G+++RT + +S QNQF+
Sbjct: 236 MRLGF---LCNSAINGHQNPASQNNPGEINRTGAAGGSEITPGGFGGIGEITVSAQNQFA 292
Query: 291 WH-SGDMHI-----GNVPLDRQQQNSNRESEDVEVM 320
WH S ++H+ ++PLD + + DVEVM
Sbjct: 293 WHLSVELHMTMGGGSSIPLDTRAGGQD----DVEVM 324
>gi|170056777|ref|XP_001864184.1| mediator complex [Culex quinquefasciatus]
gi|167876471|gb|EDS39854.1| mediator complex [Culex quinquefasciatus]
Length = 240
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 76/156 (48%), Gaps = 52/156 (33%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
AT+IFQA+QKL S KA KRPV S+ELIK G RR E
Sbjct: 99 ATSIFQARQKLTSFAKATKRPVLSDELIKET---------------SAGHTRR-----TE 138
Query: 250 MRVGFLGRLNDSPLNGHLLP--QQSLGDLHRTPSE-----------------LSQQNQFS 290
MR+GF L +S +NGH P Q + G+++RT + +S QNQF+
Sbjct: 139 MRLGF---LCNSAINGHQNPASQNNPGEINRTGAAGGSEITPGGFGGIGEITVSAQNQFA 195
Query: 291 WH-SGDMHI-----GNVPLDRQQQNSNRESEDVEVM 320
WH S ++H+ ++PLD + +DVEVM
Sbjct: 196 WHLSVELHMTMGGGSSIPLDTRAGG----QDDVEVM 227
>gi|241998910|ref|XP_002434098.1| mediator of RNA polymerase II transcription subunit, putative
[Ixodes scapularis]
gi|215495857|gb|EEC05498.1| mediator of RNA polymerase II transcription subunit, putative
[Ixodes scapularis]
Length = 105
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 55/96 (57%), Gaps = 19/96 (19%)
Query: 238 GDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQS-LGDL-----HRTPSELSQQNQFSW 291
GD RRPYPTDIEMR G+LGRL+D PL+G L QQ LGDL H + L Q FSW
Sbjct: 3 GDQRRPYPTDIEMRQGYLGRLSDLPLSGPPLQQQGNLGDLSAARGHHDQNPLGQ--SFSW 60
Query: 292 HSGDMHIGNV-PLDRQQQNS------NRESEDVEVM 320
G G++ P NS +E+EDVEVM
Sbjct: 61 QIG----GDIKPPMSSNHNSVGMDTKAKENEDVEVM 92
>gi|312068238|ref|XP_003137120.1| hypothetical protein LOAG_01533 [Loa loa]
gi|307767710|gb|EFO26944.1| hypothetical protein LOAG_01533 [Loa loa]
Length = 309
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 45/64 (70%)
Query: 193 IFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRV 252
+FQA +K++ + ++ V+SE +I++A++IS + AV APL WQ GD RPYPT+ E+R+
Sbjct: 102 VFQADKKVKEMRQSEANRVNSETIIRFANQISRTYAVAAPLGWQLGDASRPYPTEAELRL 161
Query: 253 GFLG 256
L
Sbjct: 162 SALA 165
>gi|170575295|ref|XP_001893179.1| Mediator protein 4 [Brugia malayi]
gi|158600954|gb|EDP37995.1| Mediator protein 4, putative [Brugia malayi]
Length = 463
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 45/63 (71%)
Query: 193 IFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRV 252
+FQA +K++ + ++ V+SE +I++A++IS + AV APL WQ GD RPYPT+ E+R+
Sbjct: 102 VFQADKKVKEMRQSEANRVNSETIIRFANQISRTYAVAAPLGWQLGDTSRPYPTEAELRL 161
Query: 253 GFL 255
L
Sbjct: 162 SAL 164
>gi|402590035|gb|EJW83966.1| hypothetical protein WUBG_05119, partial [Wuchereria bancrofti]
Length = 276
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 45/63 (71%)
Query: 193 IFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRV 252
+FQA +K++ + ++ V+SE +I++A++IS + AV APL WQ GD RPYPT+ E+R+
Sbjct: 70 VFQADKKVKEMRQSEANRVNSETIIRFANQISRTYAVAAPLGWQLGDTSRPYPTEAELRL 129
Query: 253 GFL 255
L
Sbjct: 130 SAL 132
>gi|326427435|gb|EGD73005.1| hypothetical protein PTSG_04714 [Salpingoeca sp. ATCC 50818]
Length = 271
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 196 AKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFL 255
+K+KL + +A + L++YAH IS+S A AP W DPRRPYP ++E+ G L
Sbjct: 97 SKKKLAHVERAEHTNLDVGVLLRYAHLISTSYATSAPKHWNADDPRRPYPQEMELNSGIL 156
>gi|76154234|gb|AAX25726.2| SJCHGC08369 protein [Schistosoma japonicum]
Length = 143
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 34/46 (73%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTW 235
+TA++ ++QKL S+ A K P+ E+L++++HRIS+++ V AP W
Sbjct: 97 STALYYSRQKLDSMTTAVKNPIDMEDLVRFSHRISATHGVIAPDNW 142
>gi|167525839|ref|XP_001747254.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774549|gb|EDQ88178.1| predicted protein [Monosiga brevicollis MX1]
Length = 938
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 191 TAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQ-PGDPRRPYPTDIE 249
T + QA +KL+ N A + E+++ YA+R++ + ++ AP W G RP+PT+++
Sbjct: 100 TLMDQADKKLEDANHAMSAALPPEQVVDYAYRLAMARSINAPFGWNYAGRHERPFPTELQ 159
Query: 250 MRVGFLGRLNDSP 262
++ G L P
Sbjct: 160 LKAGKLVEFAGVP 172
>gi|170028369|ref|XP_001842068.1| mediator complex [Culex quinquefasciatus]
gi|167874223|gb|EDS37606.1| mediator complex [Culex quinquefasciatus]
Length = 205
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 66/158 (41%), Gaps = 71/158 (44%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
AT+IFQA+QKL S KA KRP
Sbjct: 83 ATSIFQARQKLTSFAKATKRP--------------------------------------- 103
Query: 250 MRVGFLGRLNDSPLNGHLLP--QQSLGDLHRTPSE-----------------LSQQNQFS 290
MR+GFL +S +NGH P Q + G+++RT + +S QNQF+
Sbjct: 104 MRLGFL---CNSAINGHQNPASQNNPGEINRTGAAGGSEITPGGFGGIGEITVSAQNQFA 160
Query: 291 WH-SGDMHI-----GNVPLDRQQQNSNRESEDVEVMST 322
WH S ++H+ ++PLD + + VEVMST
Sbjct: 161 WHLSVELHMTMGGGSSIPLDTRAGGQDY----VEVMST 194
>gi|66801189|ref|XP_629520.1| hypothetical protein DDB_G0292608 [Dictyostelium discoideum AX4]
gi|74850970|sp|Q54D00.1|MED4_DICDI RecName: Full=Putative mediator of RNA polymerase II transcription
subunit 4; AltName: Full=Putative mediator complex
subunit 4
gi|60462910|gb|EAL61107.1| hypothetical protein DDB_G0292608 [Dictyostelium discoideum AX4]
Length = 343
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 57/148 (38%), Gaps = 35/148 (23%)
Query: 128 KKQEAHNHLQKTVVYFNKNEVVKQSFRIEIEEFTKKSKNASTAGF--EDAHGVWES---- 181
KK E H +QK + K EIEE K K ST +D E+
Sbjct: 87 KKLEKHQKIQKEITEIQK----------EIEE---KDKLISTLALNLKDIESFLENELSQ 133
Query: 182 ---------ASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAP 232
AS NE + S++ R VS E+LI YAH+IS + + AP
Sbjct: 134 DNVNINNGNASDGIVNEVLIDLKQPDDAASMDNIVNREVSPEDLISYAHKISGTTS--AP 191
Query: 233 LTWQPGDP-----RRPYPTDIEMRVGFL 255
+QP P + P P D MR L
Sbjct: 192 FGYQPNAPLASLFKPPAPQDEMMRSSVL 219
>gi|405121356|gb|AFR96125.1| hypothetical protein CNAG_05806 [Cryptococcus neoformans var.
grubii H99]
Length = 234
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 165 KNASTAGFE-DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRI 223
K AG E G+ + K I Q ++ L+ I K+ + PV ++ L+ +A +
Sbjct: 81 KKKEVAGLEMRVRGLVKRLEEGRKELEGMIDQGERSLEDIEKSEREPVPAKTLMAHAQSL 140
Query: 224 SSSNAVCAPLTWQPGDPRR--PYPTDIEMRVGFLGRLNDS 261
S ++ P D + P+PT++ MR+G L +L S
Sbjct: 141 SKHSSAPVSSLLAPVDKAQYAPWPTEMSMRMGLLFQLEGS 180
>gi|58268716|ref|XP_571514.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|338818254|sp|P0CO72.1|MED4_CRYNJ RecName: Full=Mediator of RNA polymerase II transcription subunit
4; AltName: Full=Mediator complex subunit 4
gi|57227749|gb|AAW44207.1| expressed protein [Cryptococcus neoformans var. neoformans JEC21]
Length = 234
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 165 KNASTAGFE-DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRI 223
K AG E G+ + K I Q ++ L+ I K+ + PV ++ L+ +A +
Sbjct: 81 KKNEVAGLEMRVRGLVKRLEEGRKELEGMIDQGERSLEDIEKSEREPVPAKTLMAHAQSL 140
Query: 224 SSSNAVCAPLTWQPGDPRR--PYPTDIEMRVGFLGRLNDS 261
S ++ P D + P+PT++ MR+G L +L S
Sbjct: 141 SKHSSAPVSSLLAPVDKAQYAPWPTEMSMRMGLLFQLEGS 180
>gi|134113186|ref|XP_774618.1| hypothetical protein CNBF2980 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818253|sp|P0CO73.1|MED4_CRYNB RecName: Full=Mediator of RNA polymerase II transcription subunit
4; AltName: Full=Mediator complex subunit 4
gi|50257262|gb|EAL19971.1| hypothetical protein CNBF2980 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 234
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 165 KNASTAGFE-DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRI 223
K AG E G+ + K I Q ++ L+ I K+ + PV ++ L+ +A +
Sbjct: 81 KKNEVAGLEMRVRGLVKRLEEGRKELEGMIDQGERSLEDIQKSEREPVPAKTLMAHAQSL 140
Query: 224 SSSNAVCAPLTWQPGDPRR--PYPTDIEMRVGFLGRLNDS 261
S ++ P D + P+PT++ MR+G L +L S
Sbjct: 141 SKHSSAPVSSLLAPVDKAQYAPWPTEMSMRMGLLFQLEGS 180
>gi|117926162|ref|YP_866779.1| TP901 family phage tail tape measure protein [Magnetococcus marinus
MC-1]
gi|117609918|gb|ABK45373.1| phage tail tape measure protein, TP901 family [Magnetococcus
marinus MC-1]
Length = 1183
Score = 39.7 bits (91), Expect = 2.1, Method: Composition-based stats.
Identities = 42/209 (20%), Positives = 86/209 (41%), Gaps = 14/209 (6%)
Query: 28 GIATPNLQKTVVYCNKNEVVKQSFRIEI-EVEEFTKKSKNASIAS--TAGSWYLETHSHQ 84
G A QK V ++ + + Q I I ++E F + + +I + + G W L +
Sbjct: 721 GQAAVETQKQVA--DRLKQIGQQLGINIPDMETFNRLQREGTIIADKSTGGWRLAAQAAS 778
Query: 85 KPSRTQIFSRYTPGYHFSNMSSKNISTGEKLLSLIDDI---------ELVAKKKQEAHNH 135
+ +TQ + SN++ + S KL +L + E++ +K + A
Sbjct: 779 EAIQTQRRAAQEAANQLSNLTRQRTSAQRKLAALEQQLAEEQKRQAREVLTEKIRTAEQS 838
Query: 136 LQKTVVYFNKNEVVKQSFRIEIEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQ 195
+Q T ++ ++ +I+ +K +NA + + + E + E +
Sbjct: 839 VQATERALQQSLTAEKRLADQIQGIEEKKRNARISTEDKVRSLLERNMSDREKETSRAAA 898
Query: 196 AKQKLQSINKANKRPVSSEELIKYAHRIS 224
A QKL + + SE+ IK+A ++
Sbjct: 899 ASQKLAEAQRLLSQTTLSEQDIKWAESLA 927
>gi|321260260|ref|XP_003194850.1| hypothetical protein CGB_F4340C [Cryptococcus gattii WM276]
gi|317461322|gb|ADV23063.1| Hypothetical Protein CGB_F4340C [Cryptococcus gattii WM276]
Length = 234
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 165 KNASTAGFE-DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRI 223
K AG E G+ + K I Q ++ L+ I K+ + P+ ++ L+ +A +
Sbjct: 81 KKKEVAGLEMRVRGLVKRLEEGRKELEGMIDQGEKSLEDIEKSEREPLPAKTLMAHAQSL 140
Query: 224 SSSNAVCAPLTWQPGDPRR--PYPTDIEMRVGFLGRLNDS 261
S ++ P D + P+PT++ MR+G L +L S
Sbjct: 141 SKHSSAPVSSLLAPVDKAQYAPWPTEMSMRMGLLFQLEGS 180
>gi|380021671|ref|XP_003694683.1| PREDICTED: N-acetylneuraminate lyase-like [Apis florea]
Length = 307
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 40/229 (17%)
Query: 40 YCNKNEVVKQSFRIEI------EVEEFTKKS---KNASIASTAGSWYLETHSHQKPSRTQ 90
+ N ++ KQ I++ +V E K + K SI ++ T Q + +
Sbjct: 69 WANAVKITKQHLMIQVGGASLPDVLELAKHAESIKADSILCLPDLYFKPTTMEQLKNYLK 128
Query: 91 IFSRYTPG-----YHFSNMSSKNISTGEKLLSLIDDIELVAKKK----------QEAHNH 135
+ S P YHF M++ NI G+ L SL D+I K Q +
Sbjct: 129 LISEAAPNTPLLYYHFPRMTNVNIHMGQFLESLNDEISTFVGIKFTSSDLDEGTQAFRAN 188
Query: 136 LQKTVVYFNKNEVVKQSFRIEIEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQ 195
+K VV+ +++V + I+ F S N D+ + E +G N +A
Sbjct: 189 NKKYVVFLGNDQLVNAGCAVGIDSFITTSSNMLPEFMIDS--LREGLAG-NVMKAR---D 242
Query: 196 AKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLT-WQPGDPRRP 243
+Q+L ++ A + KY + +S+ + LT PG PR P
Sbjct: 243 TQQRLTNVVLA---------ISKYGNWVSTMKVAMSLLTDINPGPPRAP 282
>gi|11498060|ref|NP_069284.1| signal-transducing histidine kinase [Archaeoglobus fulgidus DSM
4304]
gi|2650176|gb|AAB90784.1| signal-transducing histidine kinase, putative [Archaeoglobus
fulgidus DSM 4304]
Length = 771
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 16/161 (9%)
Query: 68 SIASTAGSWYLETHSHQKPSRTQIFSRYTPGYHFSNMSSKNISTGEKLLSLIDD--IELV 125
SI W+ E P + GY ++ +S ++ EK++ IDD IE +
Sbjct: 5 SIEKIWEEWFKEVSKEFSPELRVVVKERIKGYIYALLSGED---SEKIVEQIDDELIERI 61
Query: 126 AKKKQEAHNHLQKTVVYFNKNEVVKQSFRIEIEEFTKKSKNAST---AGFEDAHGVWESA 182
+ + + +++ ++ NK E EEF K +KN + A GV+E
Sbjct: 62 IRSGSKPEDVVRRMELFANKLS--------EYEEFEKVAKNFARFVPALLRKMLGVYERI 113
Query: 183 SGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRI 223
+ +A + L +N+A R EEL+K RI
Sbjct: 114 LQEEQERRKRAERALRVLSKVNEAVTRASDEEELLKEVCRI 154
>gi|330844437|ref|XP_003294132.1| hypothetical protein DICPUDRAFT_159085 [Dictyostelium purpureum]
gi|325075457|gb|EGC29342.1| hypothetical protein DICPUDRAFT_159085 [Dictyostelium purpureum]
Length = 347
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 209 RPVSSEELIKYAHRISSSNAVCAPLTWQPGDP-----RRPYPTDIEMRVGFL 255
R V+ EELI YAH+IS + AP +QP P + P P D MR L
Sbjct: 181 REVTPEELISYAHKISGT--TFAPFGYQPHLPLISLFKPPAPQDEMMRASVL 230
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.309 0.123 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,943,712,098
Number of Sequences: 23463169
Number of extensions: 199310272
Number of successful extensions: 530298
Number of sequences better than 100.0: 223
Number of HSP's better than 100.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 529801
Number of HSP's gapped (non-prelim): 362
length of query: 333
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 190
effective length of database: 9,003,962,200
effective search space: 1710752818000
effective search space used: 1710752818000
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 77 (34.3 bits)