BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14089
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|6XIA|A Chain A, Refinement Of Glucose Isomerase From Streptomyces Albus At
1.65 Angstroms With Data From An Imaging Plate
Length = 387
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 173 EDAHGVWESASGSNKN-----EATAIFQAKQKLQSINKANK-----RPVSSEEL 216
ED GVW SA+G +N E A F+A ++Q +A++ RP +++ L
Sbjct: 293 EDFDGVWASAAGCMRNYLILKERAAAFRADPEVQEALRASRLDELARPTAADGL 346
>pdb|3KCO|A Chain A, Room Temperature Neutron Structure Of D-Xylose Isomerase
In Complex With Two Ni2+ Cations And D12-D-Glucose In
The Linear Form (Refined Jointly With X-Ray Structure
3kbn)
pdb|3KCJ|A Chain A, Room Temperature Neutron Structure Of Apo-D-Xylose
Isomerase (Refined Jointly With X-Ray Structure 3kbj)
Length = 388
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 173 EDAHGVWESASGSNKN-----EATAIFQAKQKLQSINKANK-----RPVSSEEL 216
ED GVW SA+G +N E A F+A ++Q +A++ RP +++ L
Sbjct: 294 EDFDGVWASAAGCMRNYLILKERAAAFRADPEVQEALRASRLDELARPTAADGL 347
>pdb|1O1H|A Chain A, Structure Of Glucose Isomerase Derivatized With Kr.
pdb|1O1H|B Chain B, Structure Of Glucose Isomerase Derivatized With Kr.
pdb|2G4J|A Chain A, Anomalous Substructure Of Glucose Isomerase
pdb|1XIS|A Chain A, A Metal-Mediated Hydride Shift Mechanism For Xylose
Isomerase Based On The 1.6 Angstroms Streptomyces
Rubiginosus Structures With Xylitol And D-Xylose
pdb|2XIS|A Chain A, A Metal-Mediated Hydride Shift Mechanism For Xylose
Isomerase Based On The 1.6 Angstroms Streptomyces
Rubiginosus Structures With Xylitol And D-Xylose
pdb|3XIS|A Chain A, A Metal-Mediated Hydride Shift Mechanism For Xylose
Isomerase Based On The 1.6 Angstroms Streptomyces
Rubiginosus Structures With Xylitol And D-Xylose
pdb|4XIS|A Chain A, A Metal-Mediated Hydride Shift Mechanism For Xylose
Isomerase Based On The 1.6 Angstroms Streptomyces
Rubiginosus Structures With Xylitol And D-Xylose
pdb|3N4A|A Chain A, Crystal Structure Of D-Xylose Isomerase In Complex With
S-1,2- Propandiol
Length = 387
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 173 EDAHGVWESASGSNKN-----EATAIFQAKQKLQSINKANK-----RPVSSEEL 216
ED GVW SA+G +N E A F+A ++Q +A++ RP +++ L
Sbjct: 293 EDFDGVWASAAGCMRNYLILKERAAAFRADPEVQEALRASRLDELARPTAADGL 346
>pdb|1GW9|A Chain A, Tri-Iodide Derivative Of Xylose Isomerase From
Streptomyces Rubiginosus
pdb|1XIB|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|1XIC|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|1XID|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|1XIE|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|1XIF|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|1XIG|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-xylose Isomerase
pdb|1XIH|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-xylose Isomerase
pdb|1XII|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|1XIJ|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|8XIA|A Chain A, X-Ray Analysis Of D-Xylose Isomerase At 1.9 Angstroms:
Native Enzyme In Complex With Substrate And With A
Mechanism-Designed Inactivator
pdb|9XIA|A Chain A, X-Ray Analysis Of D-Xylose Isomerase At 1.9 Angstroms:
Native Enzyme In Complex With Substrate And With A
Mechanism-Designed Inactivator
Length = 388
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 173 EDAHGVWESASGSNKN-----EATAIFQAKQKLQSINKANK-----RPVSSEEL 216
ED GVW SA+G +N E A F+A ++Q +A++ RP +++ L
Sbjct: 294 EDFDGVWASAAGCMRNYLILKERAAAFRADPEVQEALRASRLDELARPTAADGL 347
>pdb|1MNZ|A Chain A, Atomic Structure Of Glucose Isomerase
pdb|2GLK|A Chain A, High-Resolution Study Of D-Xylose Isomerase, 0.94a
Resolution.
pdb|2GUB|A Chain A, Crystal Structure Of Metal Free D-Xylose Isomerase.
pdb|2GVE|A Chain A, Time-Of-Flight Neutron Diffraction Structure Of D-Xylose
Isomerase
pdb|3CWH|A Chain A, D-Xylose Isomerase In Complex With Linear Product,
Per-Deuterated Xylulose
pdb|3KBM|A Chain A, Room Temperature X-Ray Structure Of D-Xylose Isomerase
Complexed With 2cd(2+) Co-Factors And
D12-D-Alpha-Glucose In The Cyclic Form
pdb|3KBN|A Chain A, Room Temperature Structure Of D-Xylose Isomerase In
Complex With 2ni(2+) Co-Factors And D12-D-Glucose In The
Linear Form
pdb|3KBS|A Chain A, Room Temperature X-Ray Structure Of D-Xylose Isomerase In
Complex With 2cd(2+) Co-Factors
pdb|3KBV|A Chain A, Room Temperature Structure Of D-Xylose Isomerase In
Complex With 2ni(2+) Co-Factors
pdb|3KBW|A Chain A, Room Temperature X-Ray Mixed-Metal Structure Of D-Xylose
Isomerase In Complex With Ni(2+) And Mg(2+) Co-Factors
pdb|3KBJ|A Chain A, Room Temperature X-Ray Structure Of Apo-D-Xylose Isomerase
pdb|3QYS|A Chain A, Room Temperature X-Ray Structure Of D-Xylose Isomerase In
Complex With 0.6ni2+ Cation Bound In M2 Metal Binding
Site At Ph5.8
pdb|3QZA|A Chain A, Joint Neutron And X-Ray Structure Of Apo-D-Xylose
Isomerase At Ph5.9
pdb|3U3H|A Chain A, X-Ray Crystallographic Analysis Of D-Xylose
Isomerase-Catalyzed Isomerization Of (R)-Glyceraldehyde
pdb|4A8I|A Chain A, Protein Crystallization And Microgravity: Glucose
Isomerase Crystals Grown During The Pcdf-Protein Mission
pdb|4A8L|A Chain A, Protein Crystallization And Microgravity: Glucose
Isomerase Crystals Grown During The Pcdf-Protein Mission
pdb|4A8R|A Chain A, Protein Crystallization And Microgravity: Glucose
Isomerase Crystals Grown During The Pcdf-Protein Mission
pdb|4A8N|A Chain A, Protein Crystallization And Microgravity: Glucose
Isomerase Crystals Grown During The Pcdf-Protein Mission
pdb|3KCL|A Chain A, Room Temperature Neutron Structure Of D-Xylose Isomerase
In Complex With Two Cd2+ Cations And D12-D-Alpha-Glucose
In The Ring Form (Refined Jointly With X-Ray Structure
3kbm)
pdb|4E3V|A Chain A, Crystal Structure Of Xylose Isomerase From Streptomyces
Rubiginosus Cryoprotected In Proline
pdb|4DUO|A Chain A, Room-Temperature X-Ray Structure Of D-Xylose Isomerase In
Complex With 2mg2+ Ions And Xylitol At Ph 7.7
pdb|4DVO|A Chain A, Room-Temperature Joint X-RayNEUTRON STRUCTURE OF D-Xylose
Isomerase In Complex With 2ni2+ And Per-Deuterated
D-Sorbitol At Ph 5.9
Length = 388
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 173 EDAHGVWESASGSNKN-----EATAIFQAKQKLQSINKANK-----RPVSSEEL 216
ED GVW SA+G +N E A F+A ++Q +A++ RP +++ L
Sbjct: 294 EDFDGVWASAAGCMRNYLILKERAAAFRADPEVQEALRASRLDELARPTAADGL 347
>pdb|3GNX|A Chain A, Structure Of Dehydrated D-Xylose Isomerase From
Streptomyces Rubiginosus
pdb|3GNX|E Chain E, Structure Of Dehydrated D-Xylose Isomerase From
Streptomyces Rubiginosus
Length = 387
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 173 EDAHGVWESASGSNKN-----EATAIFQAKQKLQSINKANK-----RPVSSEEL 216
ED GVW SA+G +N E A F+A ++Q +A++ RP +++ L
Sbjct: 293 EDFDGVWASAAGCMRNYLILKERAAAFRADPEVQEALRASRLDELARPTAADGL 346
>pdb|1OAD|A Chain A, Glucose Isomerase From Streptomyces Rubiginosus In P21212
Crystal Form
pdb|1OAD|B Chain B, Glucose Isomerase From Streptomyces Rubiginosus In P21212
Crystal Form
Length = 388
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 173 EDAHGVWESASGSNKN-----EATAIFQAKQKLQSINKANK-----RPVSSEEL 216
ED GVW SA+G +N E A F+A ++Q +A++ RP +++ L
Sbjct: 294 EDFDGVWASAAGCMRNYLILKERAAAFRADPEVQEALRASRLDELARPTAADGL 347
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 71 STAGSWYLETHSHQKPSRTQIFSRYTPGYHFSNMS--SKNISTGEKL 115
ST ++Y + S K T+I+ PG +SN+S +K++ GE+
Sbjct: 809 STVRTYYSDFESDIKSPNTEIYQHEMPGGQYSNLSQQAKSLGLGERF 855
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 71 STAGSWYLETHSHQKPSRTQIFSRYTPGYHFSNMS--SKNISTGEKL 115
ST ++Y + S K T+I+ PG +SN+S +K++ GE+
Sbjct: 809 STVRTYYSDFESDIKSPNTEIYQHEMPGGQYSNLSQQAKSLGLGERF 855
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 71 STAGSWYLETHSHQKPSRTQIFSRYTPGYHFSNMS--SKNISTGEKL 115
ST ++Y + S K T+I+ PG +SN+S +K++ GE+
Sbjct: 809 STVRTYYSDFESDIKSPNTEIYQHEMPGGQYSNLSQQAKSLGLGERF 855
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 71 STAGSWYLETHSHQKPSRTQIFSRYTPGYHFSNMS--SKNISTGEKL 115
ST ++Y + S K T+I+ PG +SN+S +K++ GE+
Sbjct: 832 STVRTYYSDFESDIKSPNTEIYQHEMPGGQYSNLSQQAKSLGLGERF 878
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 71 STAGSWYLETHSHQKPSRTQIFSRYTPGYHFSNMS--SKNISTGEKL 115
ST ++Y + S K T+I+ PG +SN+S +K++ GE+
Sbjct: 832 STVRTYYSDFESDIKSPNTEIYQHEMPGGQYSNLSQQAKSLGLGERF 878
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 71 STAGSWYLETHSHQKPSRTQIFSRYTPGYHFSNMS--SKNISTGEKL 115
ST ++Y + S K T+I+ PG +SN+S +K++ GE+
Sbjct: 832 STVRTYYSDFESDIKSPNTEIYQHEMPGGQYSNLSQQAKSLGLGERF 878
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 71 STAGSWYLETHSHQKPSRTQIFSRYTPGYHFSNMS--SKNISTGEKL 115
ST ++Y + S K T+I+ PG +SN+S +K++ GE+
Sbjct: 832 STVRTYYSDFESDIKSPNTEIYQHEMPGGQYSNLSQQAKSLGLGERF 878
>pdb|1WHD|A Chain A, Solution Structure Of The Pdz Domain Of Rgs3
Length = 100
Score = 29.3 bits (64), Expect = 3.4, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 198 QKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDP 240
Q+L ++ + N+RPV + ++ AH I S + L W+ P
Sbjct: 55 QQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVSGP 97
>pdb|2F5Y|A Chain A, Crystal Structure Of The Pdz Domain From Human Rgs-3
pdb|2F5Y|B Chain B, Crystal Structure Of The Pdz Domain From Human Rgs-3
Length = 91
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 198 QKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYP 245
Q+L ++ + N+RPV + ++ AH I S + L W+ +P P
Sbjct: 43 QQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRMVPQVKPGP 90
>pdb|1S5N|A Chain A, Xylose Isomerase In Substrate And Inhibitor Michaelis
States: Atomic Resolution Studies Of A Metal-Mediated
Hydride Shift
Length = 386
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 173 EDAHGVWESASGSNKN-----EATAIFQAKQKLQSINKANK 208
ED GVW SA+G +N E A F+A ++Q +A++
Sbjct: 293 EDIDGVWASAAGCMRNYLILKERAAAFRADPEVQEALRASR 333
>pdb|1XYL|A Chain A, The Role Of The Divalent Metal Ion In Sugar Binding, Ring
Opening, And Isomerization By D-Xylose Isomerase:
Replacement Of A Catalytic Metal By An Amino-Acid
pdb|1XYL|B Chain B, The Role Of The Divalent Metal Ion In Sugar Binding, Ring
Opening, And Isomerization By D-Xylose Isomerase:
Replacement Of A Catalytic Metal By An Amino-Acid
pdb|1XYM|A Chain A, The Role Of The Divalent Metal Ion In Sugar Binding, Ring
Opening, And Isomerization By D-Xylose Isomerase:
Replacement Of A Catalytic Metal By An Amino-Acid
pdb|1XYM|B Chain B, The Role Of The Divalent Metal Ion In Sugar Binding, Ring
Opening, And Isomerization By D-Xylose Isomerase:
Replacement Of A Catalytic Metal By An Amino-Acid
Length = 386
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 173 EDAHGVWESASGSNKN-----EATAIFQAKQKLQSINKANK 208
ED GVW SA+G +N E A F+A ++Q +A++
Sbjct: 293 EDIDGVWASAAGCMRNYLILKERAAAFRADPEVQEALRASR 333
>pdb|1S5M|A Chain A, Xylose Isomerase In Substrate And Inhibitor Michaelis
States: Atomic Resolution Studies Of A Metal-Mediated
Hydride Shift
pdb|1MUW|A Chain A, The 0.86 Angstrom Structure Of Xylose Isomerase
Length = 386
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 173 EDAHGVWESASGSNKN-----EATAIFQAKQKLQSINKANK 208
ED GVW SA+G +N E A F+A ++Q +A++
Sbjct: 293 EDIDGVWASAAGCMRNYLILKERAAAFRADPEVQEALRASR 333
>pdb|1XYA|A Chain A, X-Ray Crystallographic Structures Of D-Xylose
Isomerase-Substrate Complexes Position The Substrate And
Provide Evidence For Metal Movement During Catalysis
pdb|1XYA|B Chain B, X-Ray Crystallographic Structures Of D-Xylose
Isomerase-Substrate Complexes Position The Substrate And
Provide Evidence For Metal Movement During Catalysis
pdb|1XYB|A Chain A, X-Ray Crystallographic Structures Of D-Xylose
Isomerase-Substrate Complexes Position The Substrate And
Provide Evidence For Metal Movement During Catalysis
pdb|1XYB|B Chain B, X-Ray Crystallographic Structures Of D-Xylose
Isomerase-Substrate Complexes Position The Substrate And
Provide Evidence For Metal Movement During Catalysis
pdb|1XYC|A Chain A, X-Ray Crystallographic Structures Of D-Xylose
Isomerase-Substrate Complexes Position The Substrate And
Provide Evidence For Metal Movement During Catalysis
pdb|1XYC|B Chain B, X-Ray Crystallographic Structures Of D-Xylose
Isomerase-Substrate Complexes Position The Substrate And
Provide Evidence For Metal Movement During Catalysis
pdb|2GYI|A Chain A, Design, Synthesis, And Characterization Of A Potent Xylose
Isomerase Inhibitor, D-Threonohydroxamic Acid, And
High-Resolution X-Ray Crystallographic Structure Of The
Enzyme-Inhibitor Complex
pdb|2GYI|B Chain B, Design, Synthesis, And Characterization Of A Potent Xylose
Isomerase Inhibitor, D-Threonohydroxamic Acid, And
High-Resolution X-Ray Crystallographic Structure Of The
Enzyme-Inhibitor Complex
Length = 386
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 173 EDAHGVWESASGSNKN-----EATAIFQAKQKLQSINKANK 208
ED GVW SA+G +N E A F+A ++Q +A++
Sbjct: 293 EDIDGVWASAAGCMRNYLILKERAAAFRADPEVQEALRASR 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.125 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,963,885
Number of Sequences: 62578
Number of extensions: 351088
Number of successful extensions: 723
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 29
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)