BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14089
(333 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7QH62|MED4_ANOGA Mediator of RNA polymerase II transcription subunit 4 OS=Anopheles
gambiae GN=MED4 PE=3 SV=3
Length = 263
Score = 171 bits (432), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 108/252 (42%), Positives = 156/252 (61%), Gaps = 37/252 (14%)
Query: 104 MSSKNISTGEKLLSLIDDIELVAK-----------KKQEAHNHLQKTVVYFNKNEVVKQS 152
MSS ++ST E+LL++I+DIE+VAK +K + +H Q + K++ +K +
Sbjct: 1 MSSYHLSTRERLLAIINDIEIVAKELIENTIAPKAQKMSSTDHAQLVELLVLKDKELKAT 60
Query: 153 FRIEIEEF-TKKSKNASTAGF----EDAHGVWESASGSNKNEATAIFQAKQKLQSINKAN 207
++ E+ +K+ +A E+ + + + + AT+IFQA+QKL SI KAN
Sbjct: 61 LQLAAEQAGIEKNMDALREQVRKQDEEINQLQRQLKEAEQILATSIFQARQKLASIAKAN 120
Query: 208 KRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHL 267
KRPVSSEELIK+AHRIS+S+A+CAPLTWQ GD RRPYPTDIEMR+GFLG+ +D +NGH
Sbjct: 121 KRPVSSEELIKFAHRISASHAICAPLTWQQGDLRRPYPTDIEMRLGFLGK-SDLNINGHN 179
Query: 268 LPQ-QSLGDLHRTPSEL-----------SQQNQFSWH-SGDMHI------GNVPLDRQQQ 308
L SL ++HR S + S NQF+WH SG++H+ G+V LD +
Sbjct: 180 LQHPNSLNEMHRNASTVGAGGAGGDIPASAPNQFAWHPSGELHMSMGAGAGSVSLD-TRA 238
Query: 309 NSNRESEDVEVM 320
+ + +DVEVM
Sbjct: 239 HKDASQDDVEVM 250
>sp|Q177A7|MED4_AEDAE Mediator of RNA polymerase II transcription subunit 4 OS=Aedes
aegypti GN=MED4 PE=3 SV=1
Length = 263
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/255 (41%), Positives = 154/255 (60%), Gaps = 43/255 (16%)
Query: 104 MSSKNISTGEKLLSLIDDIELVAK-----------KKQEAHNHLQKTVVYFNKNEVVKQS 152
MSS ++ST E+LL+++DDIE+++K +K + +H Q + +K++ +K +
Sbjct: 1 MSSYHLSTKERLLAIVDDIEIISKELIENTIAPKHQKMSSADHGQLVELLVSKDKELKAT 60
Query: 153 FRIEIEEFTKKSKNASTAGF--------EDAHGVWESASGSNKNEATAIFQAKQKLQSIN 204
++ E+ + K G E+ + + + + AT+IFQ +QKL SIN
Sbjct: 61 LQLAAEQAGIEKK---MDGLREQVKEQDEEINQLQKQLKEAEHILATSIFQGRQKLSSIN 117
Query: 205 KANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLN 264
KA KRPVSSEELIK+AHRIS+SNA+CAPLTWQ GD RRPYPTDIEMR+GFLG+ +D +N
Sbjct: 118 KAVKRPVSSEELIKFAHRISASNAICAPLTWQQGDLRRPYPTDIEMRLGFLGK-SDLNIN 176
Query: 265 GHLLP-QQSLGDLHRTPSEL-----------SQQNQFSWH-SGDMHI------GNVPLDR 305
GH P Q +L ++ R + S QNQF+WH SG++H+ G+V LD
Sbjct: 177 GHNAPNQNNLNEMQRNAAGAGAGSGVADIPASAQNQFAWHPSGELHMTMGAGAGSVSLDT 236
Query: 306 QQQNSNRESEDVEVM 320
+ + + +DVEVM
Sbjct: 237 -RSHKDASQDDVEVM 250
>sp|Q9VS38|MED4_DROME Mediator of RNA polymerase II transcription subunit 4 OS=Drosophila
melanogaster GN=MED4 PE=1 SV=1
Length = 258
Score = 148 bits (374), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 102/255 (40%), Positives = 142/255 (55%), Gaps = 51/255 (20%)
Query: 106 SKNISTGEKLLSLIDDIELVAKKK-QEAHNHLQKT------VVYFNKNEVVKQSFRI--- 155
S ++ST E+LL LIDDIE++AK+ ++AH + T + K+E ++ +
Sbjct: 2 SFHLSTKERLLLLIDDIEMIAKELIEQAHQKISSTELVDLLDLLVAKDEEFRKMLELAEE 61
Query: 156 --EIEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
++EE + + + + +S + +TAIFQA+QKL SIN+ANKRPVSS
Sbjct: 62 QAKVEEAMDQLRAKVEVHDREIQKLQKSLKDAELILSTAIFQARQKLASINQANKRPVSS 121
Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQSL 273
EELIKYAHRISS+NAV APLTW GD RRPYPTDIEMR G LG+ ++ +NG + Q+
Sbjct: 122 EELIKYAHRISSANAVSAPLTWCIGDLRRPYPTDIEMRNGLLGK-SEQNINGGTVTHQNS 180
Query: 274 GDLHRTPSELSQ----------------------QNQFSWHSGDMHI-----GN-VPLDR 305
G PSE + QNQF+W+ G++H+ GN V L+
Sbjct: 181 G----MPSEQQRTLSGSAGSGSGSGAGGEVPNAFQNQFNWNLGELHMTMGASGNTVALE- 235
Query: 306 QQQNSNRESEDVEVM 320
R +DVEVM
Sbjct: 236 -----TRAQDDVEVM 245
>sp|Q5M8Y7|MED4_XENTR Mediator of RNA polymerase II transcription subunit 4 OS=Xenopus
tropicalis GN=med4 PE=2 SV=1
Length = 252
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 143/245 (58%), Gaps = 33/245 (13%)
Query: 104 MSSKNISTGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRIEIEEFT 161
M+ ST E+L+S +DD+E+++++ E A + QK +N++++ + + EF
Sbjct: 1 MAVPEKSTKERLMSFLDDLEVLSRELIEMLALSRNQKLSQPGEENQILELLIQKD-GEFQ 59
Query: 162 KKSKNASTAG--------FE--------DAHGVWESASGSNKNEATAIFQAKQKLQSINK 205
+ K A + G E D + + + ATA++QAK+KL+SI+K
Sbjct: 60 ELMKVALSQGKIHQEMQVLEKEVEKRDSDIQQLQKQLKEAEHILATAVYQAKEKLKSIDK 119
Query: 206 ANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSP--- 262
A K +SSEELIKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++++ P
Sbjct: 120 ARKGAISSEELIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMSNLPTNG 179
Query: 263 LNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDRQQQ------NSNRES-E 315
+NGH LP +L R P L+ Q+ W S DM + +P + + N+E+ E
Sbjct: 180 VNGH-LPGDALAA-GRLPDVLAP--QYPWQSNDMSMNMLPPNHSNEFLMESLGPNKENEE 235
Query: 316 DVEVM 320
DVEVM
Sbjct: 236 DVEVM 240
>sp|Q561Q8|MED4_RAT Mediator of RNA polymerase II transcription subunit 4 OS=Rattus
norvegicus GN=Med4 PE=2 SV=1
Length = 270
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRIE--IEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ + +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQLEEENQVLELLIHRDGDFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKVHHEMQALEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ S +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTSGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVEVM
Sbjct: 204 GDALAA-GRLPDVLAP--QYPWQSNDMSVNMLPPNHSTDFLLEPPGHNKENEDDVEVM 258
>sp|Q9CQA5|MED4_MOUSE Mediator of RNA polymerase II transcription subunit 4 OS=Mus
musculus GN=Med4 PE=2 SV=1
Length = 270
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRIE--IEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ + +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQLEEENQVLELLIHRDGDFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKVHHEMQALEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ S +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTSGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVEVM
Sbjct: 204 GDALAA-GRLPDVLAP--QYPWQSNDMSVNMLPPNHSSDFLLEPPGHNKENEDDVEVM 258
>sp|Q5XG48|MED4_XENLA Mediator of RNA polymerase II transcription subunit 4 OS=Xenopus
laevis GN=med4 PE=2 SV=1
Length = 252
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 143/245 (58%), Gaps = 33/245 (13%)
Query: 104 MSSKNISTGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRIEIEEFT 161
M+ ST E+L SL+DD+E+++++ E A + QK +N++++ + + EF
Sbjct: 1 MAVPKKSTKERLESLLDDLEVLSREVIETLALSRSQKLSQPGEENQILELLIQKD-GEFQ 59
Query: 162 KKSKNASTAG--------FE--------DAHGVWESASGSNKNEATAIFQAKQKLQSINK 205
+ K A + G E D + + + ATA++QAK+KL+SI+K
Sbjct: 60 ELMKVAFSQGKTHQEMQVLEKEVEKRDSDIQQLQKQLKEAEHILATAVYQAKEKLKSIDK 119
Query: 206 ANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSP--- 262
A K +SSEELIKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++++ P
Sbjct: 120 ARKGVISSEELIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMSNLPTNG 179
Query: 263 LNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDRQQQ------NSNRES-E 315
+NGH LP +L R P L+ Q+ W S DM + +P + + N+E+ E
Sbjct: 180 VNGH-LPGDALAA-GRLPDVLA--PQYPWQSSDMSMNMLPPNHSNEFLMESLGPNKENEE 235
Query: 316 DVEVM 320
DVEVM
Sbjct: 236 DVEVM 240
>sp|Q9NPJ6|MED4_HUMAN Mediator of RNA polymerase II transcription subunit 4 OS=Homo
sapiens GN=MED4 PE=1 SV=1
Length = 270
Score = 144 bits (363), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQAGEENQVLELLIHRDGEFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVE+M
Sbjct: 204 GDALA-AGRLPDVLAP--QYPWQSNDMSMNMLPPNHSSDFLLEPPGHNKENEDDVEIM 258
>sp|Q3SYZ9|MED4_BOVIN Mediator of RNA polymerase II transcription subunit 4 OS=Bos taurus
GN=MED4 PE=2 SV=1
Length = 270
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 139/238 (58%), Gaps = 31/238 (13%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQSGEENQVLELLIHRDGEFQELMKLAL 84
Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
N E D + + + + ATA++QAK+KL+SI KA K +S
Sbjct: 85 NQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144
Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+ + +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LP 203
Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
+L R P L+ Q+ W S DM + +P + + N+E+E DVEVM
Sbjct: 204 GDALA-AGRLPDVLAP--QYPWQSNDMAMNMLPPNHSHDFLLEPPGHNKENEDDVEVM 258
>sp|Q561X3|MED4_DANRE Mediator of RNA polymerase II transcription subunit 4 OS=Danio
rerio GN=med4 PE=2 SV=1
Length = 254
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 96/141 (68%), Gaps = 14/141 (9%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI+KA K +SS+E+IKYAHRIS+SNAVCAPL W PGDPRRPYPTD+E
Sbjct: 106 ATAVYQAKEKLKSIDKARKGSISSKEIIKYAHRISASNAVCAPLNWVPGDPRRPYPTDLE 165
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP---- 302
MR G LG +++ + +NGH LP +L R P L+ Q+ W S D+ +G +P
Sbjct: 166 MRSGMLGNMSNMSTNGVNGH-LPGDALA-AGRLPDVLTP--QYPWQSTDVSMGILPPHHG 221
Query: 303 --LDRQQQNSNRESE-DVEVM 320
+ N+E+E DVE M
Sbjct: 222 NDFGLEPPGHNKENEDDVEAM 242
>sp|Q23523|MED4_CAEEL Mediator of RNA polymerase II transcription subunit 4
OS=Caenorhabditis elegans GN=mdt-4 PE=3 SV=2
Length = 334
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 45/64 (70%)
Query: 192 AIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMR 251
+ F A QKL+ + +A RPV+SE LIK AH+IS N+V APLTWQ GDP RP+P + E R
Sbjct: 108 SCFHANQKLKQMKEAELRPVNSEMLIKLAHQISKHNSVSAPLTWQMGDPSRPFPQEHEFR 167
Query: 252 VGFL 255
G L
Sbjct: 168 AGHL 171
>sp|Q621Z7|MED4_CAEBR Mediator of RNA polymerase II transcription subunit 4
OS=Caenorhabditis briggsae GN=mdt-4 PE=3 SV=3
Length = 334
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 46/64 (71%)
Query: 192 AIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMR 251
+ F A QK++ +N+A RPV+SE LIK +H+IS N+V APLTWQ GDP RP+P + E R
Sbjct: 108 SCFHANQKVKKMNEAALRPVNSETLIKLSHQISKHNSVSAPLTWQIGDPSRPFPQEHEFR 167
Query: 252 VGFL 255
G L
Sbjct: 168 TGQL 171
>sp|Q54D00|MED4_DICDI Putative mediator of RNA polymerase II transcription subunit 4
OS=Dictyostelium discoideum GN=med4 PE=3 SV=1
Length = 343
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 57/148 (38%), Gaps = 35/148 (23%)
Query: 128 KKQEAHNHLQKTVVYFNKNEVVKQSFRIEIEEFTKKSKNASTAGF--EDAHGVWES---- 181
KK E H +QK + K EIEE K K ST +D E+
Sbjct: 87 KKLEKHQKIQKEITEIQK----------EIEE---KDKLISTLALNLKDIESFLENELSQ 133
Query: 182 ---------ASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAP 232
AS NE + S++ R VS E+LI YAH+IS + + AP
Sbjct: 134 DNVNINNGNASDGIVNEVLIDLKQPDDAASMDNIVNREVSPEDLISYAHKISGTTS--AP 191
Query: 233 LTWQPGDP-----RRPYPTDIEMRVGFL 255
+QP P + P P D MR L
Sbjct: 192 FGYQPNAPLASLFKPPAPQDEMMRSSVL 219
>sp|P0CO72|MED4_CRYNJ Mediator of RNA polymerase II transcription subunit 4
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=MED4 PE=3 SV=1
Length = 234
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 165 KNASTAGFE-DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRI 223
K AG E G+ + K I Q ++ L+ I K+ + PV ++ L+ +A +
Sbjct: 81 KKNEVAGLEMRVRGLVKRLEEGRKELEGMIDQGERSLEDIEKSEREPVPAKTLMAHAQSL 140
Query: 224 SSSNAVCAPLTWQPGDPRR--PYPTDIEMRVGFLGRLNDS 261
S ++ P D + P+PT++ MR+G L +L S
Sbjct: 141 SKHSSAPVSSLLAPVDKAQYAPWPTEMSMRMGLLFQLEGS 180
>sp|P0CO73|MED4_CRYNB Mediator of RNA polymerase II transcription subunit 4
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=MED4 PE=3 SV=1
Length = 234
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 165 KNASTAGFE-DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRI 223
K AG E G+ + K I Q ++ L+ I K+ + PV ++ L+ +A +
Sbjct: 81 KKNEVAGLEMRVRGLVKRLEEGRKELEGMIDQGERSLEDIQKSEREPVPAKTLMAHAQSL 140
Query: 224 SSSNAVCAPLTWQPGDPRR--PYPTDIEMRVGFLGRLNDS 261
S ++ P D + P+PT++ MR+G L +L S
Sbjct: 141 SKHSSAPVSSLLAPVDKAQYAPWPTEMSMRMGLLFQLEGS 180
>sp|B3MSG8|RTEL1_DROAN Regulator of telomere elongation helicase 1 homolog OS=Drosophila
ananassae GN=GF20802 PE=3 SV=1
Length = 994
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 37 TVVYCNKNEV---VKQSFRIEIEVEEFTKKSKNASIASTAGSWY----LETHSHQKPSRT 89
T+V+ NK V V SF++ ++VEE + + A AG W L S K ++
Sbjct: 394 TIVFANKESVMGKVHASFKVHVQVEESKQPQGKQAPAKQAGGWLSKASLTNGSTGKVAKI 453
Query: 90 QIFSRYTPGYHFSNM 104
F + PG+ +
Sbjct: 454 INFWCFNPGFGMEQL 468
>sp|Q6PDH0|PHLB1_MOUSE Pleckstrin homology-like domain family B member 1 OS=Mus musculus
GN=Phldb1 PE=1 SV=1
Length = 1371
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 17/88 (19%)
Query: 245 PTDIEMRVGFLGRLNDSP--------------LNGHLLPQQSLGDLHRTPSELSQQNQFS 290
P D + +G GR SP +G L P SLG L S + Q
Sbjct: 504 PEDFSLTLGARGRRTRSPSPTLGESLAPRKGSFSGRLSPAYSLGSLTGASPRQSPRAQRK 563
Query: 291 WHSGDMHIGNVPLDRQQQNSNRESEDVE 318
SGD+ VP+ R+++NS E D E
Sbjct: 564 LSSGDL---RVPIPRERKNSITEISDNE 588
>sp|Q8WZL6|MED4_YARLI Mediator of RNA polymerase II transcription subunit 4 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=MED4 PE=3 SV=1
Length = 336
Score = 31.6 bits (70), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 204 NKANKRPVSSEELIKYAHRISSSNAVCAPLTWQ--PGDPRRPYPTDIEMRVGFLGRL 258
N N+ +SS +L+ YA RI+ N AP ++ P + P+P + EMR G L +
Sbjct: 194 NNENQSTLSSADLLTYATRIA--NFTTAPPYFRERPEHSKLPWPIEDEMRKGLLALM 248
>sp|P46213|SYI_THEMA Isoleucine--tRNA ligase OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=ileS PE=3 SV=2
Length = 919
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 80 THSHQKPSRTQ-IFSRYTPGYHFSNMSSKNISTGEKLLSLIDDI--ELVAKKKQEAHNH- 135
+H H+K + + + + Y P Y + K + EKLLS+ +D+ L K++Q+ H
Sbjct: 768 SHLHEKDRKYKTVQAEYWPEYREEFIDRKLMEDFEKLLSIREDVLKALEEKRQQDVIGHS 827
Query: 136 LQKTVVYFNKNEVVK---QSFRIEIEEFTKKSK 165
L VV KN+ +K + +R +EE SK
Sbjct: 828 LDAEVVLVPKNDTIKALLEKYRDILEELFIVSK 860
>sp|B9K8X3|SYI_THENN Isoleucine--tRNA ligase OS=Thermotoga neapolitana (strain ATCC
49049 / DSM 4359 / NS-E) GN=ileS PE=3 SV=1
Length = 918
Score = 31.6 bits (70), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 80 THSHQKPSRTQ-IFSRYTPGYHFSNMSSKNISTGEKLLSLIDDI--ELVAKKKQEAHNH- 135
+H H+K + + + + Y P Y + K + EKLLS+ +D+ L K++Q+ H
Sbjct: 767 SHLHEKDRKYKTVQAEYWPEYREDLIDKKIMEDFEKLLSIREDVLKALEEKRQQDVIGHS 826
Query: 136 LQKTVVYFNKNEVVK---QSFRIEIEEFTKKSKNASTAG 171
L V+ +N+ VK + +R +EE SK + + G
Sbjct: 827 LDAEVILVPRNDSVKALLEEYRDVLEELFIVSKVSLSDG 865
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.123 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,826,198
Number of Sequences: 539616
Number of extensions: 4812637
Number of successful extensions: 13622
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 13553
Number of HSP's gapped (non-prelim): 89
length of query: 333
length of database: 191,569,459
effective HSP length: 118
effective length of query: 215
effective length of database: 127,894,771
effective search space: 27497375765
effective search space used: 27497375765
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)