Query psy14089
Match_columns 333
No_of_seqs 70 out of 72
Neff 2.8
Searched_HMMs 29240
Date Fri Aug 16 19:15:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3plt_A Sphingolipid long chain 87.2 15 0.00053 33.8 14.0 40 204-251 175-215 (234)
2 1ykh_B RNA polymerase II holoe 81.3 17 0.00056 30.3 10.6 34 173-206 91-125 (132)
3 2pih_A Protein YMCA; regulate 80.9 14 0.00048 30.9 10.1 86 116-201 7-110 (151)
4 1yke_B RNA polymerase II holoe 77.8 13 0.00045 31.8 9.1 34 173-206 91-125 (151)
5 2oeq_A Protein of unknown func 72.9 20 0.00068 28.7 8.5 87 115-201 5-108 (122)
6 4fla_A Regulation of nuclear P 70.0 49 0.0017 28.2 10.8 87 111-203 23-126 (152)
7 2iaz_A Hypothetical protein SP 61.5 45 0.0016 25.8 8.3 84 117-200 4-104 (113)
8 3us6_A Histidine-containing ph 60.3 18 0.00062 30.1 6.1 55 172-226 23-84 (153)
9 3etw_A Adhesin A; antiparallel 57.9 67 0.0023 26.9 9.0 71 136-206 5-104 (119)
10 2oee_A UPF0342 protein YHEA; M 52.9 40 0.0014 26.3 6.6 84 117-200 4-104 (117)
11 2v2g_A Peroxiredoxin 6; oxidor 51.5 12 0.0004 32.7 3.7 41 212-252 152-196 (233)
12 2r25_A Phosphorelay intermedia 49.1 27 0.00093 30.5 5.5 51 176-226 14-69 (167)
13 3oja_B Anopheles plasmodium-re 48.5 1.3E+02 0.0045 28.5 10.7 22 191-212 565-586 (597)
14 3oja_B Anopheles plasmodium-re 46.4 1.6E+02 0.0054 28.0 10.8 27 177-203 537-563 (597)
15 1xcc_A 1-Cys peroxiredoxin; un 45.0 17 0.00057 31.1 3.5 39 212-250 153-195 (220)
16 1wle_A Seryl-tRNA synthetase; 42.4 1.8E+02 0.006 29.0 10.8 59 91-157 27-87 (501)
17 2dq0_A Seryl-tRNA synthetase; 40.0 1.9E+02 0.0065 28.1 10.5 54 120-179 9-64 (455)
18 1prx_A HORF6; peroxiredoxin, h 39.2 21 0.00072 30.6 3.3 40 212-251 156-199 (224)
19 2zhy_A ATP:COB(I)alamin adenos 36.7 2.1E+02 0.0073 24.9 12.4 114 108-225 28-157 (183)
20 1ses_A Seryl-tRNA synthetase; 34.4 2.1E+02 0.0073 27.4 9.7 36 120-157 9-45 (421)
21 1yvi_A Histidine-containing ph 33.0 79 0.0027 25.7 5.7 41 186-226 44-85 (149)
22 2fzt_A Hypothetical protein TM 32.7 1.1E+02 0.0039 24.2 6.2 70 119-190 4-78 (79)
23 1woz_A 177AA long conserved hy 32.2 2.5E+02 0.0085 24.3 13.7 113 108-225 20-151 (177)
24 3qne_A Seryl-tRNA synthetase, 32.1 2.9E+02 0.01 27.5 10.5 37 121-157 14-50 (485)
25 4efa_E V-type proton ATPase su 31.3 1.8E+02 0.0062 25.2 8.0 23 182-204 89-111 (233)
26 3mq9_A Bone marrow stromal ant 30.3 1.9E+02 0.0065 26.9 8.4 35 169-203 399-448 (471)
27 1ykh_A RNA polymerase II media 29.9 2.2E+02 0.0075 23.4 7.8 44 149-200 61-106 (108)
28 1nog_A Conserved hypothetical 29.8 2.8E+02 0.0094 24.1 12.4 112 108-225 21-151 (177)
29 2l5g_B Putative uncharacterize 28.1 1E+02 0.0035 21.9 4.7 28 144-181 3-30 (42)
30 1wa7_B TIP, hypothetical 28.7 27.6 29 0.00098 22.5 1.6 12 235-246 1-12 (26)
31 3sbc_A Peroxiredoxin TSA1; alp 27.2 35 0.0012 30.3 2.7 34 212-245 168-204 (216)
32 4abx_A DNA repair protein RECN 26.9 2.3E+02 0.0078 23.6 7.6 32 194-225 125-157 (175)
33 3iqt_A Signal transduction his 26.7 71 0.0024 25.6 4.3 42 186-228 32-73 (123)
34 2nt8_A Cobalamin adenosyltrans 26.2 3.6E+02 0.012 24.3 12.0 115 108-225 58-195 (223)
35 1wvt_A Hypothetical protein ST 25.5 1.6E+02 0.0056 25.4 6.6 109 108-225 22-148 (172)
36 2dq3_A Seryl-tRNA synthetase; 25.4 1.8E+02 0.0061 28.0 7.5 38 120-157 9-47 (425)
37 3tue_A Tryparedoxin peroxidase 24.9 27 0.00092 31.0 1.6 17 225-241 187-203 (219)
38 3myf_A Sensor protein; HPT, hi 24.5 77 0.0026 25.1 4.0 41 187-228 24-64 (119)
39 2avr_X Adhesion A; antiparalle 24.5 3.1E+02 0.011 23.0 9.3 69 137-205 6-103 (119)
40 1rty_A YVQK protein; all alpha 24.5 3.6E+02 0.012 23.7 12.4 115 108-225 22-158 (193)
41 2a0b_A HPT domain; sensory tra 23.5 1.3E+02 0.0044 23.3 5.1 40 186-226 30-69 (125)
42 1m1j_B Fibrinogen beta chain; 23.3 5.5E+02 0.019 25.6 10.7 21 110-130 86-113 (464)
43 2lox_B DNA repair protein RAD2 22.7 50 0.0017 24.0 2.3 21 119-139 20-41 (52)
44 1uul_A Tryparedoxin peroxidase 22.4 52 0.0018 26.8 2.7 15 227-241 169-183 (202)
45 1deq_A Fibrinogen (alpha chain 21.7 5.3E+02 0.018 25.5 10.0 27 231-257 217-247 (390)
46 2ah6_A BH1595, unknown conserv 21.4 4.4E+02 0.015 23.5 13.2 115 108-225 34-171 (208)
No 1
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=87.16 E-value=15 Score=33.84 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=27.7
Q ss_pred HHhcCCCCChHHHHHHHHHhhccccccCCCCCC-CCCCCCCCCchHHhh
Q psy14089 204 NKANKRPVSSEELIKYAHRISSSNAVCAPLTWQ-PGDPRRPYPTDIEMR 251 (333)
Q Consensus 204 ~kAek~pVssEeLIkYAHrISasnaVsAPl~Wq-pGdPrRPyPtE~eMR 251 (333)
+.|+|..| |-.|+.+|-.- + |.+.. ||++||||.....-|
T Consensus 175 E~aEK~~i----la~~gk~Ll~l--l--dd~pv~PG~~r~~Y~g~~~t~ 215 (234)
T 3plt_A 175 ELSEKFAL----IAGYGKALLEL--L--DDSPVTPGEARPAYDGYEASR 215 (234)
T ss_dssp HHHHHHHH----HHHHHHHHHTT--S--CCCCCCSSSCCCCCCCHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHh--c--CCCCCCCCCCCCCCCChhHHH
Confidence 44666554 66778777752 2 66655 899999999877654
No 2
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=81.30 E-value=17 Score=30.30 Aligned_cols=34 Identities=6% Similarity=0.094 Sum_probs=29.1
Q ss_pred HHHHHHHHH-hhhhhHHHHHHHHHHHHhHHHHHHh
Q psy14089 173 EDAHGVWES-ASGSNKNEATAIFQAKQKLQSINKA 206 (333)
Q Consensus 173 EqkI~~Le~-LKeAE~~L~taI~QAkqKLkSI~kA 206 (333)
.++|..|++ +++++..|..+|..|+..|+.++.+
T Consensus 91 ~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 125 (132)
T 1ykh_B 91 LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 125 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888865 9999999999999999999998764
No 3
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=80.88 E-value=14 Score=30.95 Aligned_cols=86 Identities=9% Similarity=0.069 Sum_probs=52.1
Q ss_pred hhhhHHHHHHHHHHHhccCc--hhhHHHHHhcCHHHHHHHHHHH---HHHhhhhhhhh---hHHHHHHHHHHHH------
Q psy14089 116 LSLIDDIELVAKKKQEAHNH--LQKTVVYFNKNEVVKQSFRIEI---EEFTKKSKNAS---TAGFEDAHGVWES------ 181 (333)
Q Consensus 116 L~~lDDlE~lsKeLie~~~~--~qliElLl~KD~eLk~~Lk~A~---qahQe~~k~i~---Q~eIEqkI~~Le~------ 181 (333)
..++|.++.|++.|-++++. -.-.+.-+..|++++++++.-. +.|+..++-.+ -.++.++++.+.+
T Consensus 7 ~~I~d~A~eL~~aI~eseeyk~yk~A~~~i~~D~eaq~li~eF~~~Q~~~~~~q~~Gk~~~~~e~~~el~~l~~~l~~np 86 (151)
T 2pih_A 7 KDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQEELEEIP 86 (151)
T ss_dssp HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHcCH
Confidence 34667777778878777633 3444566778888888766554 33333332221 1233334444433
Q ss_pred ----hhhhhHHHHHHHHHHHHhHH
Q psy14089 182 ----ASGSNKNEATAIFQAKQKLQ 201 (333)
Q Consensus 182 ----LKeAE~~L~taI~QAkqKLk 201 (333)
+++||..|...+..-.+.+.
T Consensus 87 ~V~~y~~Ae~~l~~LL~~I~~iI~ 110 (151)
T 2pih_A 87 VIQEFRDSQMEVNDLLQLVAHTIS 110 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899988888877776553
No 4
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=77.81 E-value=13 Score=31.76 Aligned_cols=34 Identities=9% Similarity=0.100 Sum_probs=29.2
Q ss_pred HHHHHHHHH-hhhhhHHHHHHHHHHHHhHHHHHHh
Q psy14089 173 EDAHGVWES-ASGSNKNEATAIFQAKQKLQSINKA 206 (333)
Q Consensus 173 EqkI~~Le~-LKeAE~~L~taI~QAkqKLkSI~kA 206 (333)
.++|..|++ +++++..|..+|..|+..|+.++.+
T Consensus 91 ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~ 125 (151)
T 1yke_B 91 LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSL 125 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888865 9999999999999999999998764
No 5
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=72.87 E-value=20 Score=28.67 Aligned_cols=87 Identities=8% Similarity=-0.048 Sum_probs=52.7
Q ss_pred hhhhhHHHHHHHHHHHhccCchhh--HHHHHhcCHHHHHHHHHHH---HHHhhhhhhhh--hHHHHHHHHHHHH------
Q psy14089 115 LLSLIDDIELVAKKKQEAHNHLQK--TVVYFNKNEVVKQSFRIEI---EEFTKKSKNAS--TAGFEDAHGVWES------ 181 (333)
Q Consensus 115 LL~~lDDlE~lsKeLie~~~~~ql--iElLl~KD~eLk~~Lk~A~---qahQe~~k~i~--Q~eIEqkI~~Le~------ 181 (333)
...++|-...|++.|-++++...+ ...-+..|++.+++++.-. +.|+..+...+ -.+..++++.+.+
T Consensus 5 ~~~I~d~A~eL~~~I~~seEy~~~k~A~~~l~~D~ea~~li~~F~~~q~~~q~~q~~G~~~~~e~~~~l~~l~~~l~~n~ 84 (122)
T 2oeq_A 5 SEPLHALARQLEQAIRASEPFQQLKRAYEDVRRDETAYRMFANVRDIQLRLHEKQMRGAAILPDEIEQAQKAMALAQQNE 84 (122)
T ss_dssp -CTTHHHHHHHHHHHHHSHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCH
Confidence 346788888899989888644333 3355677777777765444 33333332221 0123344555543
Q ss_pred ----hhhhhHHHHHHHHHHHHhHH
Q psy14089 182 ----ASGSNKNEATAIFQAKQKLQ 201 (333)
Q Consensus 182 ----LKeAE~~L~taI~QAkqKLk 201 (333)
+.+||..|...+..-.+.+.
T Consensus 85 ~v~~~~~Ae~~l~~ll~~I~~iI~ 108 (122)
T 2oeq_A 85 KLARLMALEQQMSITIAEVQQIAM 108 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999988887766543
No 6
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=70.00 E-value=49 Score=28.23 Aligned_cols=87 Identities=15% Similarity=0.203 Sum_probs=53.5
Q ss_pred hHHHhhhhhHHHHHH------HHHHHhc-c---CchhhHHHHHhcCHH-HHHHHHHHHH------HHhhhhhhhhhHHHH
Q psy14089 111 TGEKLLSLIDDIELV------AKKKQEA-H---NHLQKTVVYFNKNEV-VKQSFRIEIE------EFTKKSKNASTAGFE 173 (333)
Q Consensus 111 ~re~LL~~lDDlE~l------sKeLie~-~---~~~qliElLl~KD~e-Lk~~Lk~A~q------ahQe~~k~i~Q~eIE 173 (333)
..+.|+..|.|||.- .|+-|.+ | ....+++-+ +|++ ..++.+.+.+ +|+.+ =.++++
T Consensus 23 ~~~elik~L~~le~sassDa~vrq~Ia~LP~eVsd~s~l~kl--kDk~~~e~l~~~veeA~~~L~eYn~r----L~~E~~ 96 (152)
T 4fla_A 23 LTEELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKI--TDKEAAERLSKTVDEACLLLAEYNGR----LAAELE 96 (152)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGTCGGGGGGC--CSHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred CHHHHHHHHHHhhccccchHHHHHHHHcCCccccCHHHHHHc--ccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 458899999999864 4555655 4 222344433 3443 4444444442 44441 145666
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhHHHH
Q psy14089 174 DAHGVWESASGSNKNEATAIFQAKQKLQSI 203 (333)
Q Consensus 174 qkI~~Le~LKeAE~~L~taI~QAkqKLkSI 203 (333)
.+.+.++.|.++.......+.+++++|+.-
T Consensus 97 dR~~L~~~L~~~~~~~~~~l~e~e~~leey 126 (152)
T 4fla_A 97 DRRQLARMLVEYTQNQKDVLSEKEKKLEEY 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666668888888888888888877654
No 7
>2iaz_A Hypothetical protein SP1372; structural genomics, PSI-2, protei structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: a.281.1.2
Probab=61.46 E-value=45 Score=25.80 Aligned_cols=84 Identities=10% Similarity=0.093 Sum_probs=51.4
Q ss_pred hhhHHHHHHHHHHHhccCc--hhhHHHHHhcCHHHHHHHHHHH---HHHhhhhhhhh--hHHHHHHHHHHHH--------
Q psy14089 117 SLIDDIELVAKKKQEAHNH--LQKTVVYFNKNEVVKQSFRIEI---EEFTKKSKNAS--TAGFEDAHGVWES-------- 181 (333)
Q Consensus 117 ~~lDDlE~lsKeLie~~~~--~qliElLl~KD~eLk~~Lk~A~---qahQe~~k~i~--Q~eIEqkI~~Le~-------- 181 (333)
.++|-...|++.|-++++. -.-.+.-+..|++++++++.-. +.++..+...+ -.+..++++.+.+
T Consensus 4 ~I~d~A~eL~~~I~~s~ey~~~~~a~~~i~~d~ea~~l~~~f~~~q~~~~~~q~~G~~~~~e~~~~~~~l~~~i~~~p~v 83 (113)
T 2iaz_A 4 NIYDSANELSRGLRGLPEYKAVKAAKDAIAADAEASKIFTDYLAFQEEIQKLAQTGQMPDASFQAKMEGFGKQIQGNSLL 83 (113)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGTTTTCC----CCHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCHHH
Confidence 4667777888888877643 3445567888999998877666 22222221111 0123334555543
Q ss_pred --hhhhhHHHHHHHHHHHHhH
Q psy14089 182 --ASGSNKNEATAIFQAKQKL 200 (333)
Q Consensus 182 --LKeAE~~L~taI~QAkqKL 200 (333)
+++||..|...+..-.+.+
T Consensus 84 ~~y~~Ae~~l~~ll~~I~~~I 104 (113)
T 2iaz_A 84 SEFFTKQQQLAIYLSDIEKIV 104 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 8889998888887766654
No 8
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=60.35 E-value=18 Score=30.15 Aligned_cols=55 Identities=7% Similarity=0.047 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhh------hhHHHHHHHHHHHHhHHHHHHhcCC-CCChHHHHHHHHHhhcc
Q psy14089 172 FEDAHGVWESASG------SNKNEATAIFQAKQKLQSINKANKR-PVSSEELIKYAHRISSS 226 (333)
Q Consensus 172 IEqkI~~Le~LKe------AE~~L~taI~QAkqKLkSI~kAek~-pVssEeLIkYAHrISas 226 (333)
|.....+|..|.+ ....|..-+.++.+.|..+++|-.. +++.+.|-++||+|=++
T Consensus 23 LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGs 84 (153)
T 3us6_A 23 LDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQFKGS 84 (153)
T ss_dssp CCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 3333556666643 3678889999999999999999655 78999999999999875
No 9
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=57.85 E-value=67 Score=26.90 Aligned_cols=71 Identities=10% Similarity=0.025 Sum_probs=43.6
Q ss_pred hhhHHHHHhcCHHHHHHHHHHHHHHhhhhhhhhh------------HHHHHHHHHHHH-----------------hhhhh
Q psy14089 136 LQKTVVYFNKNEVVKQSFRIEIEEFTKKSKNAST------------AGFEDAHGVWES-----------------ASGSN 186 (333)
Q Consensus 136 ~qliElLl~KD~eLk~~Lk~A~qahQe~~k~i~Q------------~eIEqkI~~Le~-----------------LKeAE 186 (333)
+.++.-|-.-+.+|+.+.+.-.+.|++++..++- .+|+.++..+.. ++...
T Consensus 5 ~~i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~ 84 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDAL 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 4455566667777777777777777776654441 233333333332 67777
Q ss_pred HHHHHHHHHHHHhHHHHHHh
Q psy14089 187 KNEATAIFQAKQKLQSINKA 206 (333)
Q Consensus 187 ~~L~taI~QAkqKLkSI~kA 206 (333)
..|..-|-.=.++++.++++
T Consensus 85 keLd~~ik~qekiIdnFE~i 104 (119)
T 3etw_A 85 KKLEAEMEQQKAVISDFEKI 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776666554
No 10
>2oee_A UPF0342 protein YHEA; MCSG, structural genomics, PSI-2, protein structure in midwest center for structural genomics, unknown function; HET: MSE; 1.96A {Bacillus subtilis} SCOP: a.281.1.2
Probab=52.89 E-value=40 Score=26.27 Aligned_cols=84 Identities=11% Similarity=-0.001 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHHHHhccCc--hhhHHHHHhcCHHHHHHHHHHH---HHHhhhhhhhh--hHHHHHHHHHHHH--------
Q psy14089 117 SLIDDIELVAKKKQEAHNH--LQKTVVYFNKNEVVKQSFRIEI---EEFTKKSKNAS--TAGFEDAHGVWES-------- 181 (333)
Q Consensus 117 ~~lDDlE~lsKeLie~~~~--~qliElLl~KD~eLk~~Lk~A~---qahQe~~k~i~--Q~eIEqkI~~Le~-------- 181 (333)
.++|-...|++.|-++++. -.-.+.-+..|++++++++.-. +.|+..+...+ -.+..++++.+.+
T Consensus 4 ~I~d~A~eL~~~I~~s~ey~~~~~a~~~i~~d~ea~~l~~~f~~~q~~~~~~q~~G~~~~~e~~~~~~~l~~~i~~~p~v 83 (117)
T 2oee_A 4 NFYDVAYDLENALRGSEEFTRLKNLYDEVNADESAKRMFENFRDVQLRLQQKQMAGEEITQEEVTQAQKTVALVQQHEKI 83 (117)
T ss_dssp CHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHSHHHHHHHHHHHHHCC------------------CHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCHHH
Confidence 3567777888888877633 3444566788888888876555 12222111111 0012222444432
Q ss_pred --hhhhhHHHHHHHHHHHHhH
Q psy14089 182 --ASGSNKNEATAIFQAKQKL 200 (333)
Q Consensus 182 --LKeAE~~L~taI~QAkqKL 200 (333)
+++||..|...+..-.+.+
T Consensus 84 ~~y~~Ae~~l~~ll~~I~~~I 104 (117)
T 2oee_A 84 SQLMEAEQRMSMLIGELNKII 104 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887766554
No 11
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=51.52 E-value=12 Score=32.74 Aligned_cols=41 Identities=24% Similarity=0.494 Sum_probs=27.9
Q ss_pred ChHHHHHHHHHhh--ccccccCCCCCCCCCCC--CCCCchHHhhh
Q psy14089 212 SSEELIKYAHRIS--SSNAVCAPLTWQPGDPR--RPYPTDIEMRV 252 (333)
Q Consensus 212 ssEeLIkYAHrIS--asnaVsAPl~WqpGdPr--RPyPtE~eMR~ 252 (333)
+.+||++.-..+- ..+.+..|-+|+||++- +|.-++++.+.
T Consensus 152 ~~~eilr~l~~Lq~~~~~~~~~p~~W~~g~~~~~~p~~~~~~~~~ 196 (233)
T 2v2g_A 152 NFSEILRVIDSLQLTAQKKVATPADWQPGDRCMVVPGVSAEEAKT 196 (233)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEBCTTCCTTSCEEECTTSCHHHHHH
T ss_pred CHHHHHHHHHHHHhhccCCccCCCCcCcCCceEeCCCCCHHHHHH
Confidence 3455555444333 23578999999999996 78777777644
No 12
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=49.07 E-value=27 Score=30.47 Aligned_cols=51 Identities=16% Similarity=0.041 Sum_probs=42.6
Q ss_pred HHHHHHhhhh-----hHHHHHHHHHHHHhHHHHHHhcCCCCChHHHHHHHHHhhcc
Q psy14089 176 HGVWESASGS-----NKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSS 226 (333)
Q Consensus 176 I~~Le~LKeA-----E~~L~taI~QAkqKLkSI~kAek~pVssEeLIkYAHrISas 226 (333)
..+|..|.+. +.++..-+.++.+.+..|++|-..+.+.+.|-.+||.+=++
T Consensus 14 f~qL~el~dd~p~Fv~elV~~F~edse~~l~~L~~AL~~~~D~~~L~~~aH~LKGS 69 (167)
T 2r25_A 14 LNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGS 69 (167)
T ss_dssp HHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCchHHHHHHHHHHHhHHHHHHHHHHHHhcccCHHHHHHHHHhhhhh
Confidence 3445556554 47889999999999999999987789999999999999874
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=48.54 E-value=1.3e+02 Score=28.54 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=9.0
Q ss_pred HHHHHHHHhHHHHHHhcCCCCC
Q psy14089 191 TAIFQAKQKLQSINKANKRPVS 212 (333)
Q Consensus 191 taI~QAkqKLkSI~kAek~pVs 212 (333)
.-+...+++++...+.-.+.-+
T Consensus 565 ~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 565 QETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHhcCCCc
Confidence 3344445556655554444443
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=46.40 E-value=1.6e+02 Score=27.99 Aligned_cols=27 Identities=11% Similarity=0.000 Sum_probs=12.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhHHHH
Q psy14089 177 GVWESASGSNKNEATAIFQAKQKLQSI 203 (333)
Q Consensus 177 ~~Le~LKeAE~~L~taI~QAkqKLkSI 203 (333)
..+++|+.-...|+..+...+++++.+
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l 563 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAEL 563 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHH
Confidence 333334444444555555555554444
No 15
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=44.97 E-value=17 Score=31.14 Aligned_cols=39 Identities=23% Similarity=0.523 Sum_probs=24.4
Q ss_pred ChHHHHHHHHHhh--ccccccCCCCCCCCCCC--CCCCchHHh
Q psy14089 212 SSEELIKYAHRIS--SSNAVCAPLTWQPGDPR--RPYPTDIEM 250 (333)
Q Consensus 212 ssEeLIkYAHrIS--asnaVsAPl~WqpGdPr--RPyPtE~eM 250 (333)
+.+||++.-..+- ..+.+..|-+|+||++- +|.-++++.
T Consensus 153 ~~~ell~~i~~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~~ 195 (220)
T 1xcc_A 153 NAHEILRVLKSLQLTYTTPVATPVNWNEGDKCCVIPTLQDDEI 195 (220)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEBCTTCCTTSCEEECTTCCGGGH
T ss_pred CHHHHHHHHHHHHhhhcCCcccCCCcCcCCceEeCCCCCHHHH
Confidence 4455554433332 23478999999999995 666444444
No 16
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=42.35 E-value=1.8e+02 Score=28.98 Aligned_cols=59 Identities=10% Similarity=-0.049 Sum_probs=39.8
Q ss_pred cccccCCCccccccccCccchHHHhhhhhHHHHHHHHHHHhcc-Cc-hhhHHHHHhcCHHHHHHHHHHH
Q psy14089 91 IFSRYTPGYHFSNMSSKNISTGEKLLSLIDDIELVAKKKQEAH-NH-LQKTVVYFNKNEVVKQSFRIEI 157 (333)
Q Consensus 91 ~~~~~~~~~~~~~Mas~~~S~re~LL~~lDDlE~lsKeLie~~-~~-~qliElLl~KD~eLk~~Lk~A~ 157 (333)
++.--.|+|..-.|=+ -+-+ .++.|.+.+.|-.-. +. ...++.+++.|++.+++...++
T Consensus 27 ~~~~~~~~~~~~pmlD-~~~i-------r~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~ 87 (501)
T 1wle_A 27 LYEHAREGYSALPLLD-MESL-------CAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIR 87 (501)
T ss_dssp HHHHHHTTSSCCCCCC-HHHH-------HHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCcCCCCCccC-HHHH-------HhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 3333367887777776 2222 256777766665544 22 4568999999999999988887
No 17
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=40.05 E-value=1.9e+02 Score=28.14 Aligned_cols=54 Identities=7% Similarity=0.022 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhccC-c-hhhHHHHHhcCHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q psy14089 120 DDIELVAKKKQEAHN-H-LQKTVVYFNKNEVVKQSFRIEIEEFTKKSKNASTAGFEDAHGVW 179 (333)
Q Consensus 120 DDlE~lsKeLie~~~-~-~qliElLl~KD~eLk~~Lk~A~qahQe~~k~i~Q~eIEqkI~~L 179 (333)
++.|.+.+.|-.-.- . ..+++.+++.|++.+++...++ .-+. ++..+.++|..+
T Consensus 9 ~n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~-~l~~-----~~n~~sk~i~~~ 64 (455)
T 2dq0_A 9 ENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEIN-RLRH-----ERNKIAVEIGKR 64 (455)
T ss_dssp HCHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHH-HHHH-----HHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH-HHHH-----HHHHHHHHHHHh
Confidence 456666554443333 3 4568999999999999998888 2232 444455555443
No 18
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=39.20 E-value=21 Score=30.56 Aligned_cols=40 Identities=20% Similarity=0.493 Sum_probs=26.8
Q ss_pred ChHHHHHHHHHhh--ccccccCCCCCCCCCCC--CCCCchHHhh
Q psy14089 212 SSEELIKYAHRIS--SSNAVCAPLTWQPGDPR--RPYPTDIEMR 251 (333)
Q Consensus 212 ssEeLIkYAHrIS--asnaVsAPl~WqpGdPr--RPyPtE~eMR 251 (333)
+.+||++.-..+- ..+.+..|-+|+||++- +|.-++++.+
T Consensus 156 ~~~eil~~i~~l~~~~~~~~~~p~~W~~g~~~~~~p~~~~~~~~ 199 (224)
T 1prx_A 156 NFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAK 199 (224)
T ss_dssp CHHHHHHHHHHHHHHHHHCEEBCTTCCTTSCEEECTTSCHHHHH
T ss_pred CHHHHHHHHHHHHhhccCCcCCCCCCCCCCceEeCCCCCHHHHH
Confidence 4556655444433 23568899999999995 7776666653
No 19
>2zhy_A ATP:COB(I)alamin adenosyltransferase, putative; helix bundle; 1.80A {Burkholderia thailandensis} PDB: 2zhz_A*
Probab=36.67 E-value=2.1e+02 Score=24.88 Aligned_cols=114 Identities=8% Similarity=0.007 Sum_probs=66.0
Q ss_pred ccchHHHhhhhhHHHHHHHHHHHhccCchhhHHHHHhcCHHHHHHHHHHH-HHHhhhhhhhhhHHHHHHHHHHHH-----
Q psy14089 108 NISTGEKLLSLIDDIELVAKKKQEAHNHLQKTVVYFNKNEVVKQSFRIEI-EEFTKKSKNASTAGFEDAHGVWES----- 181 (333)
Q Consensus 108 ~~S~re~LL~~lDDlE~lsKeLie~~~~~qliElLl~KD~eLk~~Lk~A~-qahQe~~k~i~Q~eIEqkI~~Le~----- 181 (333)
.-+.|=.....+|++....=..........+.+.|..-+..|-.+--... ..|. +.....-..+|+.|+.+.+
T Consensus 28 K~~~riea~G~vDElns~iGla~~~~~~~~~~~~L~~IQ~~Lf~lga~la~~~~~-~i~~~~v~~LE~~id~~~~~l~pl 106 (183)
T 2zhy_A 28 KDDARIAAIGDVDELNSQIGVLLAEPLPDDVRAALSAIQHDLFDLGGELCIPGHA-AITDAHLARLDGWLAHYNGQLPPL 106 (183)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHSTTCC-CCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHHHHHhhCCCC
Confidence 45688888899999988755333222223344455554444444422221 0010 0111123456677887765
Q ss_pred ----------hhhhhHHHHHHHHHHHHhHHHHHHhcCCCCChHHHHHHHHHhhc
Q psy14089 182 ----------ASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISS 225 (333)
Q Consensus 182 ----------LKeAE~~L~taI~QAkqKLkSI~kAek~pVssEeLIkYAHrISa 225 (333)
.-..=....++++.|...+-.+.+. .+| .+++++|-.|+|.
T Consensus 107 ~~FILPgg~~~aA~Lh~aRtv~RRAER~~v~l~~~--~~v-~~~~~~yLNRLSD 157 (183)
T 2zhy_A 107 EEFILPGGARGAALAHVCRTVCRRAERSIVALGAS--EPL-NAAPRRYVNRLSD 157 (183)
T ss_dssp CSCCBSCSSHHHHHHHHHHHHHHHHHHHHHHHHHH--SCC-CSHHHHHHHHHHH
T ss_pred cceeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh--cCC-CHHHHHHHHHHHH
Confidence 3334455667888888887777664 556 5789999999996
No 20
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=34.41 E-value=2.1e+02 Score=27.43 Aligned_cols=36 Identities=8% Similarity=0.020 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcc-CchhhHHHHHhcCHHHHHHHHHHH
Q psy14089 120 DDIELVAKKKQEAH-NHLQKTVVYFNKNEVVKQSFRIEI 157 (333)
Q Consensus 120 DDlE~lsKeLie~~-~~~qliElLl~KD~eLk~~Lk~A~ 157 (333)
++.|.+.+.|-.-. +. . ++.+++.|++.+++...++
T Consensus 9 ~~~~~~~~~~~~r~~~~-~-~~~~~~~~~~~r~~~~~~~ 45 (421)
T 1ses_A 9 QEPEVFHRAIREKGVAL-D-LEALLALDREVQELKKRLQ 45 (421)
T ss_dssp HCHHHHHHHHHHHTCCC-C-HHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHhCCCc-C-HHHHHHHHHHHHHHHHHHH
Confidence 46666655444333 33 3 8899999999999988888
No 21
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=33.01 E-value=79 Score=25.73 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHhHHHHHHhcCC-CCChHHHHHHHHHhhcc
Q psy14089 186 NKNEATAIFQAKQKLQSINKANKR-PVSSEELIKYAHRISSS 226 (333)
Q Consensus 186 E~~L~taI~QAkqKLkSI~kAek~-pVssEeLIkYAHrISas 226 (333)
+.++..-+.++.+.+..|++|-.. +++.+.|-.+||+|=++
T Consensus 44 ~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGs 85 (149)
T 1yvi_A 44 SEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLKGS 85 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhH
Confidence 467778888999999999998665 58999999999999764
No 22
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=32.73 E-value=1.1e+02 Score=24.20 Aligned_cols=70 Identities=14% Similarity=0.048 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHhccCchhhHHHHHhcCHHHHHHHHH-HHHHHhhhhhhhhhHHHHHHHHHHHH----hhhhhHHHH
Q psy14089 119 IDDIELVAKKKQEAHNHLQKTVVYFNKNEVVKQSFRI-EIEEFTKKSKNASTAGFEDAHGVWES----ASGSNKNEA 190 (333)
Q Consensus 119 lDDlE~lsKeLie~~~~~qliElLl~KD~eLk~~Lk~-A~qahQe~~k~i~Q~eIEqkI~~Le~----LKeAE~~L~ 190 (333)
++++|.-.-+.||..+..-+..||-.+.+-|+.+=+. +.+.|-+=++ ++..|++.+.+|.. ++.|+..|.
T Consensus 4 I~EIEk~ID~aIE~edyE~L~~LL~kREkLlk~L~~e~l~~i~EkDk~--R~~~Ik~~~~~L~q~a~~~rna~sslq 78 (79)
T 2fzt_A 4 IDEIERKIDEAIEKEDYETLLSLLNKRKELMEGLPKDKLSEILEKDRK--RLEIIEKRKTALFQEINVIREARSSLQ 78 (79)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455555555555555555555555554444322111 1111111111 45566666666643 777776664
No 23
>1woz_A 177AA long conserved hypothetical protein (ST1454; structural genomics, unknown function; 1.94A {Sulfolobus tokodaii}
Probab=32.25 E-value=2.5e+02 Score=24.33 Aligned_cols=113 Identities=12% Similarity=-0.000 Sum_probs=67.6
Q ss_pred ccchHHHhhhhhHHHHHHHHHHHhccCchhhHHHHHhcCHHHHHHHHHHHHHHhhhh-hhhh---hHHHHHHHHHHHH--
Q psy14089 108 NISTGEKLLSLIDDIELVAKKKQEAHNHLQKTVVYFNKNEVVKQSFRIEIEEFTKKS-KNAS---TAGFEDAHGVWES-- 181 (333)
Q Consensus 108 ~~S~re~LL~~lDDlE~lsKeLie~~~~~qliElLl~KD~eLk~~Lk~A~qahQe~~-k~i~---Q~eIEqkI~~Le~-- 181 (333)
.-+.|=.....+|++....=..........+.+.|..-+..|-.+--... .... .++. -..+|+.|+.+.+
T Consensus 20 K~~~riea~GtvDElns~iGla~~~~~~~~~~~~L~~IQ~~Lf~lga~la---~~~~~~~i~~~~v~~LE~~id~~~~~l 96 (177)
T 1woz_A 20 KDSPLVNFLGDLDELNSFIGFAISKIPWEDMKKDLERVQVELFEIGEDLS---TQSSKKKIDEKYVKWLEERTVEYRKES 96 (177)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH---TTTSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhhhhccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHc---CCccccCCCHHHHHHHHHHHHHHHhhC
Confidence 45678888899999988754333222223344455554444444422222 1000 1122 3345677777764
Q ss_pred -------------hhhhhHHHHHHHHHHHHhHHHHHHhcCCCCChHHHHHHHHHhhc
Q psy14089 182 -------------ASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISS 225 (333)
Q Consensus 182 -------------LKeAE~~L~taI~QAkqKLkSI~kAek~pVssEeLIkYAHrISa 225 (333)
.-.+=....++++.|...+-.+.+.. .+| .+++++|-.|+|.
T Consensus 97 ~~l~~FILPGg~~~aA~LH~aRtv~RRAER~~v~l~~~~-~~v-~~~~~~yLNRLSD 151 (177)
T 1woz_A 97 GPVKLFVIPGGSEEASVLHVTRSVARRVERNAVKYTKEL-PEI-NRMIIVYLNRLSS 151 (177)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTS-CHHHHHHHHHHHH
T ss_pred CCCCceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-CHHHHHHHHHHHH
Confidence 33344556788888888888876654 667 5689999999996
No 24
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=32.14 E-value=2.9e+02 Score=27.53 Aligned_cols=37 Identities=5% Similarity=-0.095 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhccCchhhHHHHHhcCHHHHHHHHHHH
Q psy14089 121 DIELVAKKKQEAHNHLQKTVVYFNKNEVVKQSFRIEI 157 (333)
Q Consensus 121 DlE~lsKeLie~~~~~qliElLl~KD~eLk~~Lk~A~ 157 (333)
+.|.+...|-.-.-...+++.|++-|++.+++...++
T Consensus 14 n~~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~ 50 (485)
T 3qne_A 14 DPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLD 50 (485)
T ss_dssp CHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544333323334468889999999999888887
No 25
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=31.34 E-value=1.8e+02 Score=25.16 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.7
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHH
Q psy14089 182 ASGSNKNEATAIFQAKQKLQSIN 204 (333)
Q Consensus 182 LKeAE~~L~taI~QAkqKLkSI~ 204 (333)
|+.=+..|..++..|+++|..+.
T Consensus 89 L~ar~e~i~~v~~~a~~~L~~~~ 111 (233)
T 4efa_E 89 LSAREQSLDGIFEETKEKLSGIA 111 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888999999999999999883
No 26
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=30.31 E-value=1.9e+02 Score=26.90 Aligned_cols=35 Identities=9% Similarity=0.027 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHH-hhhhh--------------HHHHHHHHHHHHhHHHH
Q psy14089 169 TAGFEDAHGVWES-ASGSN--------------KNEATAIFQAKQKLQSI 203 (333)
Q Consensus 169 Q~eIEqkI~~Le~-LKeAE--------------~~L~taI~QAkqKLkSI 203 (333)
++.|++++.++++ |..+| ..|+.-+.|+.+|++..
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (471)
T 3mq9_A 399 THLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEEL 448 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666654 33222 34556666766665554
No 27
>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A
Probab=29.90 E-value=2.2e+02 Score=23.35 Aligned_cols=44 Identities=11% Similarity=0.042 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhhhhhhh--hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhH
Q psy14089 149 VKQSFRIEIEEFTKKSKNAS--TAGFEDAHGVWESASGSNKNEATAIFQAKQKL 200 (333)
Q Consensus 149 Lk~~Lk~A~qahQe~~k~i~--Q~eIEqkI~~Le~LKeAE~~L~taI~QAkqKL 200 (333)
+-.++..-+ -||.++..+. +.+++++-..++ .+...+.+++.+|
T Consensus 61 mHhLlNeyR-PhQARetL~~~le~Qi~~kr~e~~-------~i~~~~~~~~~~L 106 (108)
T 1ykh_A 61 IHHLLNEYR-PHQSRESLIMLLEEQLEYKRGEIR-------EIEQVCKQVHDKL 106 (108)
T ss_dssp HHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 444455444 5666665444 344444333322 3444555555544
No 28
>1nog_A Conserved hypothetical protein TA0546; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics; 1.55A {Thermoplasma acidophilum} SCOP: a.25.2.2
Probab=29.82 E-value=2.8e+02 Score=24.10 Aligned_cols=112 Identities=13% Similarity=0.030 Sum_probs=64.2
Q ss_pred ccchHHHhhhhhHHHHHHHHHHHhccCchhhHHHHHhcCHHHHHHHHHHHHHHhhh-hhhh---hhHHHHHHHHHHHH--
Q psy14089 108 NISTGEKLLSLIDDIELVAKKKQEAHNHLQKTVVYFNKNEVVKQSFRIEIEEFTKK-SKNA---STAGFEDAHGVWES-- 181 (333)
Q Consensus 108 ~~S~re~LL~~lDDlE~lsKeLie~~~~~qliElLl~KD~eLk~~Lk~A~qahQe~-~k~i---~Q~eIEqkI~~Le~-- 181 (333)
.-+.|=.....+|++....=..........+.+.|..-+..|-.+--... ... ..++ .-..+|+.|+.+.+
T Consensus 21 K~~~riea~GtvDElns~iGla~~~~~~~~~~~~L~~IQ~~Lf~lga~la---~~~~~~~i~~~~v~~LE~~id~~~~~l 97 (177)
T 1nog_A 21 KDSPVVEVQGTIDELNSFIGYALVLSRWDDIRNDLFRIQNDLFVLGEDVS---TGGKGRTVTREMIDYLEARVKEMKAEI 97 (177)
T ss_dssp --CCSHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH---TTTSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCChhheeeehHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHc---CCCcccCCCHHHHHHHHHHHHHHHhhC
Confidence 44577788888998888754333222223344445444444444322222 000 0012 23456677777765
Q ss_pred -------------hhhhhHHHHHHHHHHHHhHHHHHHhcCCCCChHHHHHHHHHhhc
Q psy14089 182 -------------ASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISS 225 (333)
Q Consensus 182 -------------LKeAE~~L~taI~QAkqKLkSI~kAek~pVssEeLIkYAHrISa 225 (333)
.-.+=....++++.|...+-.+.+. .+| .+++++|-.|+|.
T Consensus 98 ~~l~~FILPGg~~~aA~LH~aRtv~RRAER~~v~l~~~--~~v-~~~~~~yLNRLSD 151 (177)
T 1nog_A 98 GKIELFVVPGGSVESASLHMARAVSRRLERRIVAASKL--TEI-NKNVLIYANRLSS 151 (177)
T ss_dssp CCCCSCBCSCSSHHHHHHHHHHHHHHHHHHHHHHHHTT--SCC-CHHHHHHHHHHHH
T ss_pred CCCCceeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh--cCC-CHHHHHHHHHHHH
Confidence 3333455667888888887777653 667 6679999999996
No 29
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.13 E-value=1e+02 Score=21.94 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=16.1
Q ss_pred hcCHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q psy14089 144 NKNEVVKQSFRIEIEEFTKKSKNASTAGFEDAHGVWES 181 (333)
Q Consensus 144 ~KD~eLk~~Lk~A~qahQe~~k~i~Q~eIEqkI~~Le~ 181 (333)
.||.-|++.=++-+ +-++.|++|..|.+
T Consensus 3 tk~~l~qkI~kVdr----------EI~Kte~kI~~lqk 30 (42)
T 2l5g_B 3 SKEELIQNMDRVDR----------EITMVEQQISKLKK 30 (42)
T ss_dssp SSSHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 45666666555555 44556666666653
No 30
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=27.62 E-value=29 Score=22.53 Aligned_cols=12 Identities=50% Similarity=1.334 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCc
Q psy14089 235 WQPGDPRRPYPT 246 (333)
Q Consensus 235 WqpGdPrRPyPt 246 (333)
|.||.|.|+.|-
T Consensus 1 w~PG~P~P~LPp 12 (26)
T 1wa7_B 1 WDPGMPTPPLPP 12 (26)
T ss_dssp CCCCCCCCCCCC
T ss_pred CCCCCCCCCCCC
Confidence 889999877664
No 31
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=27.19 E-value=35 Score=30.25 Aligned_cols=34 Identities=21% Similarity=0.558 Sum_probs=20.4
Q ss_pred ChHHHHHHH--HHhhccccccCCCCCCCCCCC-CCCC
Q psy14089 212 SSEELIKYA--HRISSSNAVCAPLTWQPGDPR-RPYP 245 (333)
Q Consensus 212 ssEeLIkYA--HrISasnaVsAPl~WqpGdPr-RPyP 245 (333)
+.+|+++.- -+....+.+.-|-+|+||+.- -|-|
T Consensus 168 n~dEiLr~l~AlQ~~~~~~~~~Pa~W~~G~~~i~p~~ 204 (216)
T 3sbc_A 168 NVDEALRLVEAFQWTDKNGTVLPCNWTPGAATIKPTV 204 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHCCBBCTTCCTTSCCBCCST
T ss_pred CHHHHHHHHHHhhhHhhcCCCcCCCCCCCCceecCCH
Confidence 445555442 223334467779999999974 4433
No 32
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=26.94 E-value=2.3e+02 Score=23.63 Aligned_cols=32 Identities=16% Similarity=0.345 Sum_probs=21.0
Q ss_pred HHHHHhHHHHHH-hcCCCCChHHHHHHHHHhhc
Q psy14089 194 FQAKQKLQSINK-ANKRPVSSEELIKYAHRISS 225 (333)
Q Consensus 194 ~QAkqKLkSI~k-Aek~pVssEeLIkYAHrISa 225 (333)
.+-.++|..+.+ ++|--+++++|+.|...+..
T Consensus 125 ~~ie~RL~~l~~L~RKyg~~~eell~~~~~~~~ 157 (175)
T 4abx_A 125 DRVEARLSALSKLKNKYGPTLEDVVEFGAQAAE 157 (175)
T ss_dssp HHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344445555544 34555899999999887754
No 33
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=26.73 E-value=71 Score=25.64 Aligned_cols=42 Identities=10% Similarity=0.071 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHhHHHHHHhcCCCCChHHHHHHHHHhhcccc
Q psy14089 186 NKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNA 228 (333)
Q Consensus 186 E~~L~taI~QAkqKLkSI~kAek~pVssEeLIkYAHrISasna 228 (333)
...|...+..-.+-+..+++|-... +.++|...||||-++.+
T Consensus 32 ~elL~~fl~~~~~~~~~l~~a~~~~-d~~~l~~~aHkLkGaa~ 73 (123)
T 3iqt_A 32 RDMLQMLLDFLPEVRNKVEEQLVGE-NPEGLVDLIHKLHGSCG 73 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-CCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Confidence 3455555666666677777766544 57899999999988644
No 34
>2nt8_A Cobalamin adenosyltransferase; ATP binding; HET: ATP; 1.68A {Lactobacillus reuteri}
Probab=26.21 E-value=3.6e+02 Score=24.32 Aligned_cols=115 Identities=6% Similarity=0.038 Sum_probs=68.5
Q ss_pred ccchHHHhhhhhHHHHHHHHHHHhcc--CchhhHHHHHhcCHHHHHHHHHHHHHHhhhhh---hhh---hHHHHHHHHHH
Q psy14089 108 NISTGEKLLSLIDDIELVAKKKQEAH--NHLQKTVVYFNKNEVVKQSFRIEIEEFTKKSK---NAS---TAGFEDAHGVW 179 (333)
Q Consensus 108 ~~S~re~LL~~lDDlE~lsKeLie~~--~~~qliElLl~KD~eLk~~Lk~A~qahQe~~k---~i~---Q~eIEqkI~~L 179 (333)
.-+.|=.....+|++....=...... ....+.+.|..-+..|-.+--...-.-.+... ++. -..+|+.|+.+
T Consensus 58 Kdd~RIeayGtvDELnS~IGla~~~~~~~~~~~~~~L~~IQ~~Lfdlga~Latp~~~~~~~~~~i~~~~v~~LE~~Id~~ 137 (223)
T 2nt8_A 58 KNDPRVAAYGEVDELNSWVGYTKSLINSHTQVLSNELEEIQQLLFDCGHDLATPADDERHSFKFKQEQPTVWLEEKIDNY 137 (223)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGHHHHHHHHHHHHHHHHHHTSCTTCSSCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCChhheeeehHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcCCcccccccccCCCHHHHHHHHHHHHHH
Confidence 45688889999999998755333322 22345556665555555543222200000000 122 34566778777
Q ss_pred HH---------------hhhhhHHHHHHHHHHHHhHHHHHHhcCCCCChHHHHHHHHHhhc
Q psy14089 180 ES---------------ASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISS 225 (333)
Q Consensus 180 e~---------------LKeAE~~L~taI~QAkqKLkSI~kAek~pVssEeLIkYAHrISa 225 (333)
.+ .-.+=....++++.|...+-.+.+. .+| .+++++|-.|+|.
T Consensus 138 ~~~lppl~~FILPGGs~~aA~LHvaRTv~RRAER~~v~L~~~--~~v-~~~~l~YLNRLSD 195 (223)
T 2nt8_A 138 TQVVPAVKKFILPGGTQLASALHVARTITRRAERQIVQLMRE--EQI-NQDVLIFINRLSD 195 (223)
T ss_dssp HHHSCCCSSCEESCSSHHHHHHHHHHHHHHHHHHHHHHHHTT--SCC-CHHHHHHHHHHHH
T ss_pred HhhCCCCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh--cCC-CHHHHHHHHHHHH
Confidence 65 3334455667888888887777553 667 5789999999996
No 35
>1wvt_A Hypothetical protein ST2180; structural genomics, unknown function; 2.30A {Sulfolobus tokodaii}
Probab=25.47 E-value=1.6e+02 Score=25.41 Aligned_cols=109 Identities=17% Similarity=0.057 Sum_probs=61.6
Q ss_pred ccchHHHhhhhhHHHHHHHHHHHhccCchhhHHHHHhcCHHHHHHHHHHHHHHhhhhhhh---hhHHHHHHHHHHHH---
Q psy14089 108 NISTGEKLLSLIDDIELVAKKKQEAHNHLQKTVVYFNKNEVVKQSFRIEIEEFTKKSKNA---STAGFEDAHGVWES--- 181 (333)
Q Consensus 108 ~~S~re~LL~~lDDlE~lsKeLie~~~~~qliElLl~KD~eLk~~Lk~A~qahQe~~k~i---~Q~eIEqkI~~Le~--- 181 (333)
.-+.|=.....+|++....=..... ...+-+.|..-+..|-.+--... -+ ..++ .-..+|+.|..+.+
T Consensus 22 K~~~riea~G~vDElns~iGla~~~--~~~~~~~L~~IQ~~Lf~lga~la---~~-~~~i~~~~v~~LE~~id~~~~~l~ 95 (172)
T 1wvt_A 22 KDSEIVKALGDLDELNSVLGVVSSL--YPELSEVIQKLQNDIFSISSEIA---GF-DMNFSDEKVKGIEELITNYSKELE 95 (172)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHT---TC-CCCCCTHHHHHHHHHHHHHHTTSC
T ss_pred CCChhheehhhHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHhc---CC-CCCCCHHHHHHHHHHHHHHHhhCC
Confidence 4567778888888888765433221 12233333333333222211111 00 0111 23456677877765
Q ss_pred ------------hhhhhHHHHHHHHHHHHhHHHHHHhcCCCCChHHHHHHHHHhhc
Q psy14089 182 ------------ASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISS 225 (333)
Q Consensus 182 ------------LKeAE~~L~taI~QAkqKLkSI~kAek~pVssEeLIkYAHrISa 225 (333)
.-..=....++++.|...+-.+.+. .+| .+++++|-.|+|.
T Consensus 96 pl~~FILPgg~~~aA~Lh~aRtv~RRAER~~v~l~~~--~~v-~~~~~~yLNRLSD 148 (172)
T 1wvt_A 96 PLRNFVLPGGHIASSFLHLARAVCRRAERSVVTLLKE--SKA-KEVHAKYLNRLSS 148 (172)
T ss_dssp CCCSCEESCSSHHHHHHHHHHHHHHHHHHHHHHHHGG--GSS-CHHHHHHHHHHHH
T ss_pred CCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc--cCC-CHHHHHHHHHHHH
Confidence 3334455667888888887777654 567 5689999999996
No 36
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=25.44 E-value=1.8e+02 Score=27.96 Aligned_cols=38 Identities=3% Similarity=0.017 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhccCc-hhhHHHHHhcCHHHHHHHHHHH
Q psy14089 120 DDIELVAKKKQEAHNH-LQKTVVYFNKNEVVKQSFRIEI 157 (333)
Q Consensus 120 DDlE~lsKeLie~~~~-~qliElLl~KD~eLk~~Lk~A~ 157 (333)
++.|.+.+.|-.-... ..+++.+++.|++.+++...++
T Consensus 9 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~~ 47 (425)
T 2dq3_A 9 EKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLE 47 (425)
T ss_dssp HCHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 3556665444333322 4568999999999999988888
No 37
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=24.95 E-value=27 Score=31.03 Aligned_cols=17 Identities=29% Similarity=0.794 Sum_probs=1.2
Q ss_pred ccccccCCCCCCCCCCC
Q psy14089 225 SSNAVCAPLTWQPGDPR 241 (333)
Q Consensus 225 asnaVsAPl~WqpGdPr 241 (333)
..+.+.-|-+|+||++-
T Consensus 187 ~~~~~~~Pa~W~~G~~~ 203 (219)
T 3tue_A 187 EKHGEVCPANWKKGDPG 203 (219)
T ss_dssp HHC--------------
T ss_pred HhcCCCcCCCCCCCCcc
Confidence 34467779999999984
No 38
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=24.49 E-value=77 Score=25.09 Aligned_cols=41 Identities=7% Similarity=0.145 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhcCCCCChHHHHHHHHHhhcccc
Q psy14089 187 KNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNA 228 (333)
Q Consensus 187 ~~L~taI~QAkqKLkSI~kAek~pVssEeLIkYAHrISasna 228 (333)
..|...+..-.+-+..+++|-... +.+.|..+||||-++.+
T Consensus 24 ~lL~~fl~~~~~~~~~l~~a~~~~-d~~~l~~~aHkLkGaa~ 64 (119)
T 3myf_A 24 EMLKMLLDSLPETVEKIQTALGQN-DQATMLSTIHKLHGASC 64 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Confidence 345555555555566666655433 58999999999988544
No 39
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=24.48 E-value=3.1e+02 Score=22.96 Aligned_cols=69 Identities=10% Similarity=0.023 Sum_probs=36.7
Q ss_pred hhHHHHHhcCHHHHHHHHHHHHHHhhhhhhhh------------hHHHHHHHHHHHH-----------------hhhhhH
Q psy14089 137 QKTVVYFNKNEVVKQSFRIEIEEFTKKSKNAS------------TAGFEDAHGVWES-----------------ASGSNK 187 (333)
Q Consensus 137 qliElLl~KD~eLk~~Lk~A~qahQe~~k~i~------------Q~eIEqkI~~Le~-----------------LKeAE~ 187 (333)
.++.-|-.-..+|+.+++.-.+.|++++..++ +.+|+.++..+.. -+++-.
T Consensus 6 ~V~s~l~~LEaeyq~L~~kE~qrynqeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~~~~ 85 (119)
T 2avr_X 6 SLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALK 85 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666554332 3344444444432 445555
Q ss_pred HHHHHHHHHHHhHHHHHH
Q psy14089 188 NEATAIFQAKQKLQSINK 205 (333)
Q Consensus 188 ~L~taI~QAkqKLkSI~k 205 (333)
.|+.-|..=.+.+..+++
T Consensus 86 ~Ld~eI~~qe~iI~nFe~ 103 (119)
T 2avr_X 86 KLEAEMEQQKAVISDFEK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666555555555443
No 40
>1rty_A YVQK protein; all alpha-helical trimeric protein, structural genomics, PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: a.25.2.2
Probab=24.46 E-value=3.6e+02 Score=23.66 Aligned_cols=115 Identities=11% Similarity=0.068 Sum_probs=65.4
Q ss_pred ccchHHHhhhhhHHHHHHHHHHHhcc----CchhhHHHHHhcCHHHHHHHHHHHHHHhhhhhhhh---hHHHHHHHHHHH
Q psy14089 108 NISTGEKLLSLIDDIELVAKKKQEAH----NHLQKTVVYFNKNEVVKQSFRIEIEEFTKKSKNAS---TAGFEDAHGVWE 180 (333)
Q Consensus 108 ~~S~re~LL~~lDDlE~lsKeLie~~----~~~qliElLl~KD~eLk~~Lk~A~qahQe~~k~i~---Q~eIEqkI~~Le 180 (333)
.-+.|=.....+|++....=...... ....+.+.|..-+..|-.+--...-.-.+...++. -..+|+.|+.+.
T Consensus 22 K~~~rieayGtvDElns~iGla~~~~~~~~~~~~~~~~L~~IQ~~Lf~lga~la~p~~~~~~~i~~~~v~~LE~~Id~~~ 101 (193)
T 1rty_A 22 KDSLRVESYGTIDELNSFIGLALAELSGQPGFEDLTAELLTIQHELFDCGGDLAIVTERKDYKLTEESVSFLETRIDAYT 101 (193)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHH
T ss_pred CCChhhheeccHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHHHHH
Confidence 45678888889999887644322211 12234444544444444432222200000001122 345566777776
Q ss_pred H---------------hhhhhHHHHHHHHHHHHhHHHHHHhcCCCCChHHHHHHHHHhhc
Q psy14089 181 S---------------ASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISS 225 (333)
Q Consensus 181 ~---------------LKeAE~~L~taI~QAkqKLkSI~kAek~pVssEeLIkYAHrISa 225 (333)
+ .-.+=....++++.|...+-.+.+. .+| .+++++|-.|+|.
T Consensus 102 ~~l~pl~~FILPGG~~~aA~LH~aRtv~RRAER~~v~l~~~--~~v-~~~~~~yLNRLSD 158 (193)
T 1rty_A 102 AEAPELKKFILPGGSKCASLLHIARTITRRAERRVVALMKS--EEI-HETVLRYLNRLSD 158 (193)
T ss_dssp HHSCCCCSCBCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHH--SCC-CHHHHHHHHHHHH
T ss_pred hhCCCCCceeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh--cCC-CHHHHHHHHHHHH
Confidence 5 3334455667888888887777664 567 6789999999996
No 41
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=23.51 E-value=1.3e+02 Score=23.26 Aligned_cols=40 Identities=8% Similarity=0.071 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHhcCCCCChHHHHHHHHHhhcc
Q psy14089 186 NKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSS 226 (333)
Q Consensus 186 E~~L~taI~QAkqKLkSI~kAek~pVssEeLIkYAHrISas 226 (333)
...|..-+.++.+.|..+++|-... +.+.+-+.||+|-++
T Consensus 30 ~~ll~~F~~e~~~~l~~L~~a~~~~-d~~~~~~~aH~LKGs 69 (125)
T 2a0b_A 30 TDGLAVFEKMMPGYVSVLESNLTAQ-DKKGIVEEGHKIKGA 69 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 4567777778888888888876543 788999999999774
No 42
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=23.33 E-value=5.5e+02 Score=25.60 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=12.1
Q ss_pred chHHHhhhh-------hHHHHHHHHHHH
Q psy14089 110 STGEKLLSL-------IDDIELVAKKKQ 130 (333)
Q Consensus 110 S~re~LL~~-------lDDlE~lsKeLi 130 (333)
=+.+-|+.. |+||+....+|-
T Consensus 86 ~l~D~L~k~q~~V~~~LqeLe~~l~~ls 113 (464)
T 1m1j_B 86 ELQTTLLKQEKTVKPVLRDLKDRVAKFS 113 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHhHHHHHHHHHHHHh
Confidence 345555554 666666666553
No 43
>2lox_B DNA repair protein RAD2; transcription-hydrolase complex; HET: DNA; NMR {Saccharomyces cerevisiae}
Probab=22.74 E-value=50 Score=24.04 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHhc-cCchhhH
Q psy14089 119 IDDIELVAKKKQEA-HNHLQKT 139 (333)
Q Consensus 119 lDDlE~lsKeLie~-~~~~qli 139 (333)
=||||+|+.+||+. |.-.|+-
T Consensus 20 dddlevlseelfedvptksqis 41 (52)
T 2lox_B 20 DDDLEVLSEELFEDVPTKSQIS 41 (52)
T ss_pred chhHHHHHHHHHhhcccHhhhh
Confidence 37999999999998 5555543
No 44
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=22.41 E-value=52 Score=26.78 Aligned_cols=15 Identities=33% Similarity=0.911 Sum_probs=12.7
Q ss_pred ccccCCCCCCCCCCC
Q psy14089 227 NAVCAPLTWQPGDPR 241 (333)
Q Consensus 227 naVsAPl~WqpGdPr 241 (333)
+.+..|.+|++|++-
T Consensus 169 ~~~~~p~~w~~g~~~ 183 (202)
T 1uul_A 169 HGEVCPANWKPGDKT 183 (202)
T ss_dssp HSCBBCTTCCTTSCC
T ss_pred cCCccCCCcCCCCce
Confidence 467889999999985
No 45
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.74 E-value=5.3e+02 Score=25.49 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=17.9
Q ss_pred CCCCCCCCCC-CCC-CCchHHhhh--hcccc
Q psy14089 231 APLTWQPGDP-RRP-YPTDIEMRV--GFLGR 257 (333)
Q Consensus 231 APl~WqpGdP-rRP-yPtE~eMR~--G~Lg~ 257 (333)
.|..|.-..+ .+| |++-.+||. +.|.+
T Consensus 217 vP~~fKsq~q~a~~Ew~al~~~~Qm~~~LE~ 247 (390)
T 1deq_A 217 VPREFKSQLQEAPLEWKALLEMQQTKMVLET 247 (390)
T ss_pred CChhhcccccccchHHHHHHhhhhheeeecc
Confidence 7778884433 355 777778877 66655
No 46
>2ah6_A BH1595, unknown conserved protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bacillus halodurans}
Probab=21.43 E-value=4.4e+02 Score=23.52 Aligned_cols=115 Identities=11% Similarity=0.022 Sum_probs=67.6
Q ss_pred ccchHHHhhhhhHHHHHHHHHHHhcc---CchhhHHHHHhcCHHHHHHHHHHHHH--Hhhhhhhhh---hHHHHHHHHHH
Q psy14089 108 NISTGEKLLSLIDDIELVAKKKQEAH---NHLQKTVVYFNKNEVVKQSFRIEIEE--FTKKSKNAS---TAGFEDAHGVW 179 (333)
Q Consensus 108 ~~S~re~LL~~lDDlE~lsKeLie~~---~~~qliElLl~KD~eLk~~Lk~A~qa--hQe~~k~i~---Q~eIEqkI~~L 179 (333)
.-+.|=.....+|++....=...... ....+.+.|..-+..|-.+--...-. -.+...++. -..+|+.|..+
T Consensus 34 Kdd~RIeayGtvDELnS~IGla~~~~~~~~~~~~~~~L~~IQ~~Lfdlga~Latp~~~~~~~~~i~~~~v~~LE~~Id~~ 113 (208)
T 2ah6_A 34 KDDTRVVAYGTTDELNSFVGSAITQLDENTFADIRGELFKIQHELFDCGGDLAMLKVKEDRPYKAKQEIVDFLEQRIDAY 113 (208)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHTSCTTTTHHHHHHHHHHHHHHHHHHHHHHCC------CCSCCHHHHHHHHHHHHHH
T ss_pred CCChhheeeccHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHcCCCcccccccCCCHHHHHHHHHHHHHH
Confidence 56788899999999998755333322 22345555555555555443222200 000001122 34556667777
Q ss_pred HH---------------hhhhhHHHHHHHHHHHHhHHHHHHhcCCCCChHHHHHHHHHhhc
Q psy14089 180 ES---------------ASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISS 225 (333)
Q Consensus 180 e~---------------LKeAE~~L~taI~QAkqKLkSI~kAek~pVssEeLIkYAHrISa 225 (333)
.+ .-..=....++++.|...+-.+.+. .+| .+++++|-.|+|.
T Consensus 114 ~~~l~pl~~FILPGG~~~aA~LHvaRTv~RRAER~~v~L~~~--~~v-~~~~l~YLNRLSD 171 (208)
T 2ah6_A 114 IKEAPELERFILPGGSEAAASLHVCRTIARRAERYVVRLQQE--GEI-NPIVLKYLNRLSD 171 (208)
T ss_dssp HHHSCCCCSCEESCSSHHHHHHHHHHHHHHHHHHHHHHHHHH--SCC-CHHHHHHHHHHHH
T ss_pred HhhCCCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh--cCC-CHHHHHHHHHHHH
Confidence 65 3334455678888888888777664 567 6789999999996
Done!