Your job contains 1 sequence.
>psy14089
MLAANQNVEVENSDLSKSSIVYNNTHKGIATPNLQKTVVYCNKNEVVKQSFRIEIEVEEF
TKKSKNASIASTAGSWYLETHSHQKPSRTQIFSRYTPGYHFSNMSSKNISTGEKLLSLID
DIELVAKKKQEAHNHLQKTVVYFNKNEVVKQSFRIEIEEFTKKSKNASTAGFEDAHGVWE
SASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDP
RRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGN
VPLDRQQQNSNRESEDVEVMSTDSSSSSSSDSQ
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14089
(333 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0035754 - symbol:MED4 "Mediator complex subunit 4"... 350 9.2e-36 2
MGI|MGI:1914631 - symbol:Med4 "mediator of RNA polymerase... 340 5.0e-35 2
RGD|1306671 - symbol:Med4 "mediator complex subunit 4" sp... 340 5.0e-35 2
UNIPROTKB|F1PQ09 - symbol:MED4 "Uncharacterized protein" ... 335 1.7e-34 2
UNIPROTKB|Q9NPJ6 - symbol:MED4 "Mediator of RNA polymeras... 335 1.7e-34 2
UNIPROTKB|Q3SYZ9 - symbol:MED4 "Mediator of RNA polymeras... 334 2.1e-34 2
UNIPROTKB|F1NV91 - symbol:MED4 "Uncharacterized protein" ... 335 4.4e-34 2
ZFIN|ZDB-GENE-050417-438 - symbol:med4 "mediator complex ... 324 4.9e-33 2
UNIPROTKB|B4DX67 - symbol:MED4 "Mediator of RNA polymeras... 335 2.3e-30 1
UNIPROTKB|Q5T911 - symbol:MED4 "Mediator of RNA polymeras... 335 2.3e-30 1
UNIPROTKB|F1RK11 - symbol:MED4 "Uncharacterized protein" ... 334 3.0e-30 1
ZFIN|ZDB-GENE-051120-42 - symbol:zgc:123294 "zgc:123294" ... 275 5.3e-24 1
WB|WBGene00007012 - symbol:mdt-4 species:6239 "Caenorhabd... 196 1.2e-13 1
>FB|FBgn0035754 [details] [associations]
symbol:MED4 "Mediator complex subunit 4" species:7227
"Drosophila melanogaster" [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=ISS] [GO:0016592
"mediator complex" evidence=ISS;IDA] [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=ISS;IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0003713 "transcription
coactivator activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0007517 "muscle organ
development" evidence=IMP] [GO:0048813 "dendrite morphogenesis"
evidence=IMP] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] InterPro:IPR019258 Pfam:PF10018 GO:GO:0007095
EMBL:AE014296 GO:GO:0048813 GO:GO:0007517 GO:GO:0006367
GO:GO:0016592 GO:GO:0001104 CTD:29079 eggNOG:NOG285307
GeneTree:ENSGT00390000012063 KO:K15146 OMA:VCAPLNW EMBL:AY061502
RefSeq:NP_648094.1 UniGene:Dm.3578 DIP:DIP-18262N IntAct:Q9VS38
MINT:MINT-322705 STRING:Q9VS38 PaxDb:Q9VS38 PRIDE:Q9VS38
EnsemblMetazoa:FBtr0076889 GeneID:38799 KEGG:dme:Dmel_CG8609
FlyBase:FBgn0035754 InParanoid:Q9VS38 OrthoDB:EOG4DFN4H
PhylomeDB:Q9VS38 GenomeRNAi:38799 NextBio:810434 Bgee:Q9VS38
Uniprot:Q9VS38
Length = 258
Score = 350 (128.3 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
Identities = 96/201 (47%), Positives = 125/201 (62%)
Query: 106 SKNISTGEKLLSLIDDIELVAKKK-QEAHNHLQKT-VVYFNKNEVVK-QSFR--IEIEEF 160
S ++ST E+LL LIDDIE++AK+ ++AH + T +V V K + FR +E+ E
Sbjct: 2 SFHLSTKERLLLLIDDIEMIAKELIEQAHQKISSTELVDLLDLLVAKDEEFRKMLELAEE 61
Query: 161 TKKSKNAST---AGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
K + A A E + + +S + +TAIFQA+QKL SIN+ANKRPVSS
Sbjct: 62 QAKVEEAMDQLRAKVEVHDREIQKLQKSLKDAELILSTAIFQARQKLASINQANKRPVSS 121
Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQSL 273
EELIKYAHRISS+NAV APLTW GD RRPYPTDIEMR G LG+ ++ +NG + Q+
Sbjct: 122 EELIKYAHRISSANAVSAPLTWCIGDLRRPYPTDIEMRNGLLGK-SEQNINGGTVTHQNS 180
Query: 274 GDLHRTPSELSQQNQFSWHSG 294
G PSE QQ S +G
Sbjct: 181 G----MPSE--QQRTLSGSAG 195
Score = 52 (23.4 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
Identities = 7/13 (53%), Positives = 12/13 (92%)
Query: 286 QNQFSWHSGDMHI 298
QNQF+W+ G++H+
Sbjct: 211 QNQFNWNLGELHM 223
>MGI|MGI:1914631 [details] [associations]
symbol:Med4 "mediator of RNA polymerase II transcription,
subunit 4 homolog (yeast)" species:10090 "Mus musculus" [GO:0001104
"RNA polymerase II transcription cofactor activity" evidence=ISO]
[GO:0003712 "transcription cofactor activity" evidence=ISO]
[GO:0004872 "receptor activity" evidence=ISO] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISO] [GO:0016592 "mediator complex" evidence=ISO;ISA;IDA]
[GO:0030518 "intracellular steroid hormone receptor signaling
pathway" evidence=ISO] [GO:0030521 "androgen receptor signaling
pathway" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0046966 "thyroid
hormone receptor binding" evidence=ISO] InterPro:IPR019258
Pfam:PF10018 MGI:MGI:1914631 GO:GO:0045893 GO:GO:0030521
GO:GO:0004872 Reactome:REACT_127416 GO:GO:0006367
Reactome:REACT_27166 GO:GO:0016592 GO:GO:0001104 CTD:29079
eggNOG:NOG285307 GeneTree:ENSGT00390000012063 HOGENOM:HOG000043883
HOVERGEN:HBG052450 KO:K15146 OMA:VCAPLNW OrthoDB:EOG408N8T
EMBL:AK010270 EMBL:AK010686 EMBL:AK078288 EMBL:AK145636
EMBL:BC024950 IPI:IPI00132328 IPI:IPI00857481 RefSeq:NP_080395.1
UniGene:Mm.282888 IntAct:Q9CQA5 STRING:Q9CQA5 PhosphoSite:Q9CQA5
PaxDb:Q9CQA5 PRIDE:Q9CQA5 Ensembl:ENSMUST00000022705 GeneID:67381
KEGG:mmu:67381 UCSC:uc007upu.1 InParanoid:Q9CQA5 NextBio:324404
Bgee:Q9CQA5 Genevestigator:Q9CQA5 GermOnline:ENSMUSG00000022109
Uniprot:Q9CQA5
Length = 270
Score = 340 (124.7 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 69/116 (59%), Positives = 86/116 (74%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI KA K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct: 122 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 181
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP 302
MR G LG++N+ S +NGHL P +L R P L+ Q + W S DM + +P
Sbjct: 182 MRSGLLGQMNNPSTSGVNGHL-PGDALA-AGRLPDVLAPQ--YPWQSNDMSVNMLP 233
Score = 55 (24.4 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVK 150
ST E+LLS ++D+E+++++ E A + QK + +N+V++
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQLEEENQVLE 67
>RGD|1306671 [details] [associations]
symbol:Med4 "mediator complex subunit 4" species:10116 "Rattus
norvegicus" [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0004872 "receptor activity"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=IEA;ISO] [GO:0016592 "mediator complex"
evidence=IEA;ISO] [GO:0030518 "intracellular steroid hormone
receptor signaling pathway" evidence=ISO] [GO:0030521 "androgen
receptor signaling pathway" evidence=IEA;ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA;ISO]
[GO:0046966 "thyroid hormone receptor binding" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR019258
Pfam:PF10018 RGD:1306671 GO:GO:0045893 GO:GO:0030521 GO:GO:0004872
GO:GO:0006367 GO:GO:0016592 GO:GO:0001104 CTD:29079
eggNOG:NOG285307 GeneTree:ENSGT00390000012063 HOGENOM:HOG000043883
HOVERGEN:HBG052450 KO:K15146 OrthoDB:EOG408N8T EMBL:BC093402
IPI:IPI00373294 RefSeq:NP_001019427.1 UniGene:Rn.114469
STRING:Q561Q8 Ensembl:ENSRNOT00000023195 GeneID:306030
KEGG:rno:306030 UCSC:RGD:1306671 InParanoid:Q561Q8 NextBio:655435
Genevestigator:Q561Q8 Uniprot:Q561Q8
Length = 270
Score = 340 (124.7 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 69/116 (59%), Positives = 86/116 (74%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI KA K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct: 122 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 181
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP 302
MR G LG++N+ S +NGHL P +L R P L+ Q + W S DM + +P
Sbjct: 182 MRSGLLGQMNNPSTSGVNGHL-PGDALA-AGRLPDVLAPQ--YPWQSNDMSVNMLP 233
Score = 55 (24.4 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVK 150
ST E+LLS ++D+E+++++ E A + QK + +N+V++
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQLEEENQVLE 67
>UNIPROTKB|F1PQ09 [details] [associations]
symbol:MED4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016592 "mediator complex" evidence=IEA]
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] InterPro:IPR019258 Pfam:PF10018 GO:GO:0016592
GO:GO:0001104 GeneTree:ENSGT00390000012063 OMA:VCAPLNW
EMBL:AAEX03013121 Ensembl:ENSCAFT00000007168 Uniprot:F1PQ09
Length = 271
Score = 335 (123.0 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 68/116 (58%), Positives = 86/116 (74%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI KA K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct: 123 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 182
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP 302
MR G LG++N+ + +NGHL P +L R P L+ Q + W S DM + +P
Sbjct: 183 MRSGLLGQMNNPSTNGVNGHL-PGDALA-AGRLPDVLAPQ--YPWQSNDMSMNMLP 234
Score = 55 (24.4 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 97 PGYHFSNMSSKNISTGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFR 154
PG + + N ST E+LLS ++D+E+++++ E A + QK + +N+V++
Sbjct: 14 PGGGGAGAAGGN-STRERLLSALEDLEVLSRELIEMLAISRNQKLLPPDEENQVLELLIH 72
Query: 155 I--EIEEFTKKSKN 166
E +E K + N
Sbjct: 73 RDGEFQELMKLALN 86
>UNIPROTKB|Q9NPJ6 [details] [associations]
symbol:MED4 "Mediator of RNA polymerase II transcription
subunit 4" species:9606 "Homo sapiens" [GO:0030521 "androgen
receptor signaling pathway" evidence=IDA] [GO:0046966 "thyroid
hormone receptor binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0004872 "receptor activity" evidence=IDA]
[GO:0030518 "intracellular steroid hormone receptor signaling
pathway" evidence=IDA] [GO:0003712 "transcription cofactor
activity" evidence=IDA] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=IDA;TAS] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=NAS] [GO:0042809 "vitamin D receptor binding"
evidence=NAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IDA] [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR019258 Pfam:PF10018
Reactome:REACT_111045 GO:GO:0045893 GO:GO:0030521 GO:GO:0004872
GO:GO:0006367 GO:GO:0046966 GO:GO:0030374 GO:GO:0016592
GO:GO:0001104 GO:GO:0042809 CTD:29079 eggNOG:NOG285307
HOVERGEN:HBG052450 KO:K15146 OMA:VCAPLNW OrthoDB:EOG408N8T
EMBL:AF300618 EMBL:AF230381 EMBL:AF161475 EMBL:AK001934
EMBL:CR457276 EMBL:CR541830 EMBL:AK222713 EMBL:AK223017
EMBL:AL158196 EMBL:BC005189 IPI:IPI00556494 RefSeq:NP_001257558.1
RefSeq:NP_054885.1 UniGene:Hs.181112 UniGene:Hs.741275
ProteinModelPortal:Q9NPJ6 IntAct:Q9NPJ6 MINT:MINT-1196457
STRING:Q9NPJ6 PhosphoSite:Q9NPJ6 DMDM:29840770 PaxDb:Q9NPJ6
PRIDE:Q9NPJ6 DNASU:29079 Ensembl:ENST00000258648 GeneID:29079
KEGG:hsa:29079 UCSC:uc001vby.1 GeneCards:GC13M048627
HGNC:HGNC:17903 HPA:HPA006232 MIM:605718 neXtProt:NX_Q9NPJ6
PharmGKB:PA134877001 InParanoid:Q9NPJ6 PhylomeDB:Q9NPJ6
ChiTaRS:MED4 GenomeRNAi:29079 NextBio:52046 ArrayExpress:Q9NPJ6
Bgee:Q9NPJ6 CleanEx:HS_MED4 Genevestigator:Q9NPJ6
GermOnline:ENSG00000136146 Uniprot:Q9NPJ6
Length = 270
Score = 335 (123.0 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 68/116 (58%), Positives = 86/116 (74%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI KA K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct: 122 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 181
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP 302
MR G LG++N+ + +NGHL P +L R P L+ Q + W S DM + +P
Sbjct: 182 MRSGLLGQMNNPSTNGVNGHL-PGDALA-AGRLPDVLAPQ--YPWQSNDMSMNMLP 233
Score = 55 (24.4 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 18/61 (29%), Positives = 35/61 (57%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQAGEENQVLELLIHRDGEFQELMKLAL 84
Query: 166 N 166
N
Sbjct: 85 N 85
>UNIPROTKB|Q3SYZ9 [details] [associations]
symbol:MED4 "Mediator of RNA polymerase II transcription
subunit 4" species:9913 "Bos taurus" [GO:0046966 "thyroid hormone
receptor binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030521 "androgen
receptor signaling pathway" evidence=IEA] [GO:0016592 "mediator
complex" evidence=IEA] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=IEA] [GO:0004872 "receptor
activity" evidence=IEA] [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=IEA] InterPro:IPR019258
Pfam:PF10018 GO:GO:0045893 GO:GO:0030521 GO:GO:0004872
GO:GO:0006367 GO:GO:0016592 GO:GO:0001104 EMBL:BC103312
IPI:IPI00689096 RefSeq:NP_001029658.1 UniGene:Bt.48975
STRING:Q3SYZ9 PRIDE:Q3SYZ9 Ensembl:ENSBTAT00000025979 GeneID:515299
KEGG:bta:515299 CTD:29079 eggNOG:NOG285307
GeneTree:ENSGT00390000012063 HOGENOM:HOG000043883
HOVERGEN:HBG052450 InParanoid:Q3SYZ9 KO:K15146 OMA:VCAPLNW
OrthoDB:EOG408N8T NextBio:20871753 Uniprot:Q3SYZ9
Length = 270
Score = 334 (122.6 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 68/116 (58%), Positives = 86/116 (74%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI KA K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct: 122 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 181
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP 302
MR G LG++N+ + +NGHL P +L R P L+ Q + W S DM + +P
Sbjct: 182 MRSGLLGQMNNPSTNGVNGHL-PGDALA-AGRLPDVLAPQ--YPWQSNDMAMNMLP 233
Score = 55 (24.4 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 18/61 (29%), Positives = 35/61 (57%)
Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
ST E+LLS ++D+E+++++ E A + QK + +N+V++ E +E K +
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKLLQSGEENQVLELLIHRDGEFQELMKLAL 84
Query: 166 N 166
N
Sbjct: 85 N 85
>UNIPROTKB|F1NV91 [details] [associations]
symbol:MED4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA] [GO:0004872 "receptor activity"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0016592 "mediator
complex" evidence=IEA] [GO:0030521 "androgen receptor signaling
pathway" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0046966 "thyroid
hormone receptor binding" evidence=IEA] InterPro:IPR019258
Pfam:PF10018 GO:GO:0045893 GO:GO:0030521 GO:GO:0004872
GO:GO:0006367 GO:GO:0016592 GO:GO:0001104
GeneTree:ENSGT00390000012063 OMA:VCAPLNW EMBL:AADN02005412
IPI:IPI00577080 Ensembl:ENSGALT00000027455 Uniprot:F1NV91
Length = 283
Score = 335 (123.0 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 68/116 (58%), Positives = 86/116 (74%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI KA K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct: 135 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 194
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP 302
MR G LG++N+ + +NGHL P +L R P L+ Q + W S DM + +P
Sbjct: 195 MRSGLLGQMNNPSTNGVNGHL-PGDALA-AGRLPDVLAPQ--YPWQSSDMSMNMLP 246
Score = 51 (23.0 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 9/19 (47%), Positives = 17/19 (89%)
Query: 110 STGEKLLSLIDDIELVAKK 128
ST E+LL+ ++D+EL+A++
Sbjct: 38 STRERLLAALEDLELLARE 56
>ZFIN|ZDB-GENE-050417-438 [details] [associations]
symbol:med4 "mediator complex subunit 4"
species:7955 "Danio rerio" [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR019258
Pfam:PF10018 ZFIN:ZDB-GENE-050417-438 GO:GO:0016592 GO:GO:0001104
GeneTree:ENSGT00390000012063 EMBL:BX571777 IPI:IPI00512276
Ensembl:ENSDART00000128197 ArrayExpress:F1QW37 Bgee:F1QW37
Uniprot:F1QW37
Length = 262
Score = 324 (119.1 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 66/116 (56%), Positives = 86/116 (74%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI+KA K +SSEE+IKYAHRIS+SNAVCAPL W PGDPRRPYPTD+E
Sbjct: 114 ATAVYQAKEKLKSIDKARKGSISSEEIIKYAHRISASNAVCAPLNWVPGDPRRPYPTDLE 173
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP 302
MR G LG +++ + +NGHL P +L R P L+ Q + W S D+ +G +P
Sbjct: 174 MRSGMLGNMSNMSTNGVNGHL-PGDALA-AGRLPDVLTPQ--YPWQSTDVSMGILP 225
Score = 52 (23.4 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 9/19 (47%), Positives = 17/19 (89%)
Query: 110 STGEKLLSLIDDIELVAKK 128
ST E+LLS +DD+E+++++
Sbjct: 17 STKERLLSTLDDLEVLSRE 35
>UNIPROTKB|B4DX67 [details] [associations]
symbol:MED4 "Mediator of RNA polymerase II transcription
subunit 4" species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] InterPro:IPR019258 Pfam:PF10018
GO:GO:0016592 GO:GO:0001104 CTD:29079 HOGENOM:HOG000043883
HOVERGEN:HBG052450 KO:K15146 EMBL:AL158196 RefSeq:NP_001257558.1
UniGene:Hs.181112 UniGene:Hs.741275 GeneID:29079 KEGG:hsa:29079
HGNC:HGNC:17903 ChiTaRS:MED4 EMBL:AK301835 IPI:IPI00646646
STRING:B4DX67 Ensembl:ENST00000378586 Uniprot:B4DX67
Length = 224
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 68/116 (58%), Positives = 86/116 (74%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI KA K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct: 76 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 135
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP 302
MR G LG++N+ + +NGHL P +L R P L+ Q + W S DM + +P
Sbjct: 136 MRSGLLGQMNNPSTNGVNGHL-PGDALA-AGRLPDVLAPQ--YPWQSNDMSMNMLP 187
>UNIPROTKB|Q5T911 [details] [associations]
symbol:MED4 "Mediator of RNA polymerase II transcription
subunit 4" species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] InterPro:IPR019258 Pfam:PF10018
GO:GO:0016592 GO:GO:0001104 HOGENOM:HOG000043883 HOVERGEN:HBG052450
EMBL:AL158196 UniGene:Hs.181112 UniGene:Hs.741275 HGNC:HGNC:17903
ChiTaRS:MED4 IPI:IPI00033546 Ensembl:ENST00000417167 Uniprot:Q5T911
Length = 238
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 68/116 (58%), Positives = 86/116 (74%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI KA K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct: 100 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 159
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP 302
MR G LG++N+ + +NGHL P +L R P L+ Q + W S DM + +P
Sbjct: 160 MRSGLLGQMNNPSTNGVNGHL-PGDALA-AGRLPDVLAPQ--YPWQSNDMSMNMLP 211
>UNIPROTKB|F1RK11 [details] [associations]
symbol:MED4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0030521 "androgen receptor
signaling pathway" evidence=IEA] [GO:0016592 "mediator complex"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0004872 "receptor
activity" evidence=IEA] [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=IEA] InterPro:IPR019258
Pfam:PF10018 GO:GO:0045893 GO:GO:0030521 GO:GO:0004872
GO:GO:0006367 GO:GO:0016592 GO:GO:0001104
GeneTree:ENSGT00390000012063 OMA:VCAPLNW EMBL:FP326716
Ensembl:ENSSSCT00000010303 Uniprot:F1RK11
Length = 252
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 68/116 (58%), Positives = 86/116 (74%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
ATA++QAK+KL+SI KA K +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct: 104 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 163
Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP 302
MR G LG++N+ + +NGHL P +L R P L+ Q + W S DM + +P
Sbjct: 164 MRSGLLGQMNNPSTNGVNGHL-PGDALA-AGRLPDVLAPQ--YPWQSNDMAMNMLP 215
>ZFIN|ZDB-GENE-051120-42 [details] [associations]
symbol:zgc:123294 "zgc:123294" species:7955 "Danio
rerio" [GO:0016592 "mediator complex" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA] InterPro:IPR019258 Pfam:PF10018
ZFIN:ZDB-GENE-051120-42 GO:GO:0016592 GO:GO:0001104 KO:K15146
EMBL:BC109438 IPI:IPI00656510 RefSeq:NP_001032512.1
UniGene:Dr.93263 GeneID:641496 KEGG:dre:641496 NextBio:20901598
Uniprot:Q32LT3
Length = 227
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 60/126 (47%), Positives = 80/126 (63%)
Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
AT ++QAKQKL+SINKA+K+PVS E+L+K AHRIS+SN VCAPL W+ GD RRPYPTD +
Sbjct: 96 ATVVYQAKQKLESINKADKKPVSFEDLVKLAHRISASNGVCAPLAWKTGDLRRPYPTDKD 155
Query: 250 MRVGFLGRLNDSPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHI----GNVPLDR 305
M+ G L R+ D N Q + + R S + + +SW S HI NV + R
Sbjct: 156 MKSGLLFRMGDYSGNS----SQGVTEFVRNDSAI-EAGTYSWFSSTPHIVGGSSNV-MQR 209
Query: 306 QQQNSN 311
Q+ +
Sbjct: 210 QEDGES 215
>WB|WBGene00007012 [details] [associations]
symbol:mdt-4 species:6239 "Caenorhabditis elegans"
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016592 "mediator
complex" evidence=IEA] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR019258 Pfam:PF10018 GO:GO:0009792 GO:GO:0002009
GO:GO:0018991 GO:GO:0016592 GO:GO:0001104 EMBL:FO081669
eggNOG:NOG285307 GeneTree:ENSGT00390000012063 KO:K15146 PIR:T27901
RefSeq:NP_494905.2 ProteinModelPortal:Q23523 PaxDb:Q23523
EnsemblMetazoa:ZK546.13 GeneID:173852 KEGG:cel:CELE_ZK546.13
UCSC:ZK546.13 CTD:173852 WormBase:ZK546.13 HOGENOM:HOG000113544
InParanoid:Q23523 OMA:ATPNEKQ NextBio:881399 Uniprot:Q23523
Length = 334
Score = 196 (74.1 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 59/176 (33%), Positives = 90/176 (51%)
Query: 117 SLIDDIELVAKKKQEAHNHLQKTVVYFNKNEVVKQSFRIEIEEFTKKSKNAST--AGFED 174
+LI+ + V K E ++ K ++ +K + +K + + EF ++ + T A E
Sbjct: 30 TLINRDKSVMLKNGETVTNIIK--LFDSKQDSIKTLLK-RVPEFQEREQLIRTLEAHVEK 86
Query: 175 AHGVWESASGSNKNEATAI----FQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVC 230
V + + K+ A+ F A QKL+ + +A RPV+SE LIK AH+IS N+V
Sbjct: 87 RDEVIQQLETNLKSCEVALTRSCFHANQKLKQMKEAELRPVNSEMLIKLAHQISKHNSVS 146
Query: 231 APLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQSLGD--LHRTPSELS 284
APLTWQ GDP RP+P + E R G L LLP +++ L +PS S
Sbjct: 147 APLTWQMGDPSRPFPQEHEFRAGHLLNSKVQSTGPQLLPGKNVAQRPLITSPSASS 202
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.125 0.355 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 333 313 0.00081 116 3 11 23 0.47 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 13
No. of states in DFA: 604 (64 KB)
Total size of DFA: 217 KB (2119 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 32.92u 0.11s 33.03t Elapsed: 00:00:02
Total cpu time: 32.93u 0.11s 33.04t Elapsed: 00:00:02
Start: Thu Aug 15 16:40:13 2013 End: Thu Aug 15 16:40:15 2013