RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14089
         (333 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 40.8 bits (95), Expect = 6e-04
 Identities = 46/272 (16%), Positives = 94/272 (34%), Gaps = 93/272 (34%)

Query: 67  ASIASTAGSW---------YLE------THSHQKPSRTQIFSRYTPGYHFSNMSSKNIST 111
           A   +   SW          +          ++    T +     P     ++   ++  
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL----PP-----SILEDSLEN 330

Query: 112 GEK----LLSLIDDIELVAKKKQEAHNHLQKTVVYFNKNEVVKQSFRIEIEEFTKKS-KN 166
            E     +LS+ +       ++Q     +Q  V   N +  +    ++EI      S  N
Sbjct: 331 NEGVPSPMLSISN-----LTQEQ-----VQDYVNKTNSH--LPAGKQVEI------SLVN 372

Query: 167 AST----AGF-EDAHGVW----ESASGSNKNEATAIFQAKQKLQSINKANKR--PVS--- 212
            +     +G  +  +G+     ++ + S  +++   F +++KL    K + R  PV+   
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF-SERKL----KFSNRFLPVASPF 427

Query: 213 -SEELIKYAHRISSSNAVCAPLTWQPGDPRRP-YPT----DI-EMRVGFLGRLND----S 261
            S  L+  +  I + + V   +++   D + P Y T    D+  +      R+ D     
Sbjct: 428 HSHLLVPASDLI-NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL 486

Query: 262 PLN---------GHLL---P--QQSLGDL-HR 278
           P+           H+L   P     LG L HR
Sbjct: 487 PVKWETTTQFKATHILDFGPGGASGLGVLTHR 518


>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4
           glycosyltransferase, rossmann fold, complex; HET: GDP;
           2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
          Length = 406

 Score = 31.9 bits (73), Expect = 0.26
 Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 4/37 (10%)

Query: 234 TWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNG--HLL 268
           ++        YP +    V FLGR  D P  G   LL
Sbjct: 194 SFADAPLLDGYPRE-GRTVLFLGRY-DEPRKGMAVLL 228


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 31.4 bits (70), Expect = 0.58
 Identities = 30/192 (15%), Positives = 48/192 (25%), Gaps = 75/192 (39%)

Query: 53  IEIEVEEFTKKSKNASIA------STAG--SWYLETHSHQKPSRT---QIFSRYTP---- 97
           I+ +V     K    S+       ST    S YLE     +        I   Y      
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459

Query: 98  ------------------GYHFSN-------------------MSSKNISTG------EK 114
                             G+H  N                   +  K             
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519

Query: 115 LLSLIDDIELVAKKKQEAHNHLQKTVVYFNKNEVVKQSFRIEIEEFTKKSK--------- 165
           +L+ +  ++       +     ++ V     N ++   F  +IEE    SK         
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLV-----NAILD--FLPKIEENLICSKYTDLLRIAL 572

Query: 166 -NASTAGFEDAH 176
                A FE+AH
Sbjct: 573 MAEDEAIFEEAH 584


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 27.4 bits (60), Expect = 4.6
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 7/56 (12%)

Query: 113 EKLLSLIDDIELVAKKKQE----AHNHLQK-TVVYFNKNEVVKQSFRIEIEEFTKK 163
            K L  +D        +QE    A   L++       + E  K + RI  + F ++
Sbjct: 95  RKRLQELDAAS--KVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQ 148


>2kjq_A DNAA-related protein; solution structure, NESG, structural
           genomics, PSI-2, protei structure initiative; NMR
           {Neisseria meningitidis serogroup B}
          Length = 149

 Score = 26.8 bits (60), Expect = 6.6
 Identities = 3/15 (20%), Positives = 8/15 (53%)

Query: 118 LIDDIELVAKKKQEA 132
            +D +E +  ++Q  
Sbjct: 88  AVDQVEKLGNEEQAL 102


>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
           baeyer-villiger oxidation green CH monooxygenase,
           oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
           PDB: 3gwd_A* 3ucl_A*
          Length = 540

 Score = 27.5 bits (62), Expect = 8.0
 Identities = 6/35 (17%), Positives = 11/35 (31%)

Query: 66  NASIASTAGSWYLETHSHQKPSRTQIFSRYTPGYH 100
           NA++ +   SW    +   K      +      Y 
Sbjct: 482 NATLFTKGDSWIFGANIPGKKPSVLFYLGGLRNYR 516


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.309    0.123    0.343 

Gapped
Lambda     K      H
   0.267   0.0501    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,538,357
Number of extensions: 249195
Number of successful extensions: 365
Number of sequences better than 10.0: 1
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 8
Length of query: 333
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 239
Effective length of database: 4,077,219
Effective search space: 974455341
Effective search space used: 974455341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.3 bits)