RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14089
         (333 letters)



>d2awia1 a.35.1.11 (A:2-66) PrgX {Enterococcus faecalis [TaxId:
           1351]}
          Length = 65

 Score = 26.5 bits (58), Expect = 1.1
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 205 KANKRPVSSEELIKYAHRI 223
           +A+ RP+S EEL K++ R+
Sbjct: 35  EADSRPISVEELSKFSERL 53


>d1wjxa_ b.111.1.1 (A:) Small protein B (SmpB) {Thermus thermophilus
           [TaxId: 274]}
          Length = 120

 Score = 26.6 bits (59), Expect = 2.3
 Identities = 11/79 (13%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 79  ETHSHQKPSRTQIFSRYTPGYHFSNMSSKNISTGEKLLSLIDDIELVAKKKQEAHNHLQK 138
            + +  +     + + Y   Y   + ++ +     KLL    ++  +  K ++    L  
Sbjct: 40  GSFARFEDGELYLENLYIAPYEKGSYANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLVP 99

Query: 139 TVVYFNKNEVVKQSFRIEI 157
             +YFN+    K    + +
Sbjct: 100 LKIYFNERGYAK----VLL 114


>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 48

 Score = 24.6 bits (54), Expect = 3.7
 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 7/43 (16%)

Query: 185 SNKNEATAI-------FQAKQKLQSINKANKRPVSSEELIKYA 220
           ++  E  A+       ++ ++  + ++K  +   SSE LI+ A
Sbjct: 1   TDDAEQEAVARLVALGYKPQEASRMVSKIARPDASSETLIREA 43


>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
           (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId:
           5691]}
          Length = 383

 Score = 25.9 bits (55), Expect = 7.2
 Identities = 9/43 (20%), Positives = 14/43 (32%)

Query: 203 INKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYP 245
            N    R  S  E+I+ A + +           + GDP     
Sbjct: 304 FNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVA 346


>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase
           {Thermobifida fusca [TaxId: 2021]}
          Length = 298

 Score = 25.9 bits (56), Expect = 8.1
 Identities = 8/45 (17%), Positives = 15/45 (33%)

Query: 56  EVEEFTKKSKNASIASTAGSWYLETHSHQKPSRTQIFSRYTPGYH 100
           E  E   +  + ++     SWY   +   KP    ++      Y 
Sbjct: 237 EWVEHVNEIADETLYPMTASWYTGANVPGKPRVFMLYVGGFHRYR 281


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.123    0.343 

Gapped
Lambda     K      H
   0.267   0.0677    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,101,891
Number of extensions: 47387
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 7
Length of query: 333
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 247
Effective length of database: 1,226,816
Effective search space: 303023552
Effective search space used: 303023552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.3 bits)