BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1409
(320 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R0J7|VP37B_MOUSE Vacuolar protein sorting-associated protein 37B OS=Mus musculus
GN=Vps37b PE=2 SV=1
Length = 285
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 86/132 (65%), Gaps = 2/132 (1%)
Query: 119 EESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVEL 178
EE++T + N KEM +ASN+SLAE NL + L +K++L ++L L ++ + K
Sbjct: 36 EEAQTVQLN--KEMTLASNRSLAEGNLLYQPQLDAQKARLTQKYQELQVLFEAYQIKKTK 93
Query: 179 IKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRR 238
+ NN S +T+LALLQ ++IEE++E + E+FL+G + +D F++ + KR L H+RR
Sbjct: 94 LDKQSNNASLETLLALLQAEGAKIEEDTENMAEKFLDGELPLDSFIDVYQSKRKLAHMRR 153
Query: 239 IKADKMAEMLTK 250
+K +K+ E++ K
Sbjct: 154 VKVEKLQELVLK 165
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 5 ESLLEHLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEE 64
E+ L + +L EL+ D+ + + T + N KEM +ASN+SLAE NL +
Sbjct: 7 EARFAGLSLMQLHELLEDDAQLGDMVRGMEEAQTVQLN--KEMTLASNRSLAEGNLLYQP 64
Query: 65 ALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESE 122
L +K++L ++L L ++ + K + NN S +T+LALLQ ++IEE++E
Sbjct: 65 QLDAQKARLTQKYQELQVLFEAYQIKKTKLDKQSNNASLETLLALLQAEGAKIEEDTE 122
>sp|Q9H9H4|VP37B_HUMAN Vacuolar protein sorting-associated protein 37B OS=Homo sapiens
GN=VPS37B PE=1 SV=1
Length = 285
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 84/132 (63%), Gaps = 2/132 (1%)
Query: 119 EESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVEL 178
EE++ + N KEM +ASN+SLAE NL + L K++L ++L L ++ + K
Sbjct: 36 EETQNVQLN--KEMTLASNRSLAEGNLLYQPQLDTLKARLTQKYQELQVLFEAYQIKKTK 93
Query: 179 IKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRR 238
+ ++ S +T+LALLQ ++IEE++E + E+FL+G + +D F++ + KR L H+RR
Sbjct: 94 LDRQSSSASLETLLALLQAEGAKIEEDTENMAEKFLDGELPLDSFIDVYQSKRKLAHMRR 153
Query: 239 IKADKMAEMLTK 250
+K +K+ EM+ K
Sbjct: 154 VKIEKLQEMVLK 165
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
Query: 5 ESLLEHLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEE 64
E+ L + +L EL+ DE ++ T + N KEM +ASN+SLAE NL +
Sbjct: 7 EARFAGLSLVQLNELLEDEGQLTEMVQKMEETQNVQLN--KEMTLASNRSLAEGNLLYQP 64
Query: 65 ALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESE 122
L K++L ++L L ++ + K + ++ S +T+LALLQ ++IEE++E
Sbjct: 65 QLDTLKARLTQKYQELQVLFEAYQIKKTKLDRQSSSASLETLLALLQAEGAKIEEDTE 122
>sp|A5D8V6|VP37C_HUMAN Vacuolar protein sorting-associated protein 37C OS=Homo sapiens
GN=VPS37C PE=1 SV=2
Length = 355
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 79/132 (59%)
Query: 119 EESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVEL 178
E E + ++EM +A+N+SLAE NL + L +S L D ++L +L + + +
Sbjct: 28 ESPEVQDLQLEREMALATNRSLAERNLEFQGPLEISRSNLSDRYQELRKLVERCQEQKAK 87
Query: 179 IKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRR 238
++ + + T+L LLQ +IEEESE + E+FL G + ++ FLE F+ R+L HLRR
Sbjct: 88 LEKFSSALQPGTLLDLLQVEGMKIEEESEAMAEKFLEGEVPLETFLENFSSMRMLSHLRR 147
Query: 239 IKADKMAEMLTK 250
++ +K+ E++ K
Sbjct: 148 VRVEKLQEVVRK 159
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 13 ISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQ 72
+ EL+EL ND E + E+ + ++EM +A+N+SLAE NL + L +S
Sbjct: 9 LQELEELQNDSEAIDQLALESPEV--QDLQLEREMALATNRSLAERNLEFQGPLEISRSN 66
Query: 73 LLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESET 123
L D ++L +L + + + ++ + + T+L LLQ +IEEESE
Sbjct: 67 LSDRYQELRKLVERCQEQKAKLEKFSSALQPGTLLDLLQVEGMKIEEESEA 117
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 276 YPPVPVPPMGPGYPVSGGGMPLP-HIQMTPYP 306
YP P+ GPGYP+ GG P P + Q +PYP
Sbjct: 272 YPGTPMGASGPGYPLRGGRAPSPGYPQQSPYP 303
>sp|Q8R105|VP37C_MOUSE Vacuolar protein sorting-associated protein 37C OS=Mus musculus
GN=Vps37c PE=2 SV=1
Length = 352
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 81/136 (59%)
Query: 119 EESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVEL 178
E E + ++EM +A+N+SLAE NL + L +S L D ++L +L + + +
Sbjct: 28 ESPEVQDLQLEREMALATNRSLAEQNLEFQGPLEISRSNLSDKYQELRKLVERCQEQKAK 87
Query: 179 IKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRR 238
++ + + T+L LLQ +IEEESE + E+FL G + ++ FLE+F+ R L+HLRR
Sbjct: 88 LEKFSSALQPGTLLDLLQIEGMKIEEESEAMAEKFLEGEVPLETFLESFSSMRTLLHLRR 147
Query: 239 IKADKMAEMLTKRNSF 254
++ +K+ +++ + +
Sbjct: 148 VRVEKLQDVVRRPRAL 163
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 14/117 (11%)
Query: 13 ISELKELVNDEETFNNFTKEATATLTTESNE------QKEMLIASNKSLAEYNLSQEEAL 66
+ EL+E+ ND EA A L ES E ++EM +A+N+SLAE NL + L
Sbjct: 9 LQELEEMQND--------PEAIARLALESPEVQDLQLEREMALATNRSLAEQNLEFQGPL 60
Query: 67 LEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESET 123
+S L D ++L +L + + + ++ + + T+L LLQ +IEEESE
Sbjct: 61 EISRSNLSDKYQELRKLVERCQEQKAKLEKFSSALQPGTLLDLLQIEGMKIEEESEA 117
>sp|Q5R9T2|VP37C_PONAB Vacuolar protein sorting-associated protein 37C OS=Pongo abelii
GN=VPS37C PE=2 SV=1
Length = 355
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 78/132 (59%)
Query: 119 EESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVEL 178
E E + ++EM +A+N+SLAE NL + L +S L D ++L +L + + +
Sbjct: 28 ESPEVQDLQLEREMALATNRSLAERNLEFQGPLEISRSNLSDKYQELRKLVERCQEQKAK 87
Query: 179 IKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRR 238
++ + + T+L LLQ +IE ESE + E+FL G + ++ FLE F+ R+L HLRR
Sbjct: 88 LEKFSSALQPGTLLDLLQVEGMKIEGESEAMAEKFLEGEVPLETFLENFSSMRMLSHLRR 147
Query: 239 IKADKMAEMLTK 250
++ +K+ E++ K
Sbjct: 148 VRVEKLQEVVRK 159
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Query: 13 ISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQ 72
+ EL+EL ND E + E+ + ++EM +A+N+SLAE NL + L +S
Sbjct: 9 LQELEELQNDSEAIDQLALESPEV--QDLQLEREMALATNRSLAERNLEFQGPLEISRSN 66
Query: 73 LLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESET 123
L D ++L +L + + + ++ + + T+L LLQ +IE ESE
Sbjct: 67 LSDKYQELRKLVERCQEQKAKLEKFSSALQPGTLLDLLQVEGMKIEGESEA 117
>sp|Q8NEZ2|VP37A_HUMAN Vacuolar protein sorting-associated protein 37A OS=Homo sapiens
GN=VPS37A PE=1 SV=1
Length = 397
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 72/128 (56%)
Query: 130 KEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTD 189
K+ L+ S + LA NL E +L K+ +LD E LTQ+ + E K++ + S
Sbjct: 269 KDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHELSESCSAS 328
Query: 190 TVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRIKADKMAEMLT 249
+ A L+ AA E EEES+ + E+FL G +++D FL +F KR + H RR K +K+ + +
Sbjct: 329 ALQARLKVAAHEAEEESDNIAEDFLEGKMEIDDFLSSFMEKRTICHCRRAKEEKLQQAIA 388
Query: 250 KRNSFGSP 257
+ F +P
Sbjct: 389 MHSQFHAP 396
Score = 38.9 bits (89), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 45 KEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTD 104
K+ L+ S + LA NL E +L K+ +LD E LTQ+ + E K++ + S
Sbjct: 269 KDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHELSESCSAS 328
Query: 105 TVLALLQTAASEIEEESE 122
+ A L+ AA E EEES+
Sbjct: 329 ALQARLKVAAHEAEEESD 346
>sp|Q8CHS8|VP37A_MOUSE Vacuolar protein sorting-associated protein 37A OS=Mus musculus
GN=Vps37a PE=2 SV=1
Length = 397
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 71/128 (55%)
Query: 130 KEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTD 189
KE L+ + + LA NL E +L K+ +LD E L Q+ + E K++ + S
Sbjct: 269 KEDLVKNIEELARKNLLLEHSLEGKRQTVLDKYELLLQMKSTFEKKMQRQHELSESCSAS 328
Query: 190 TVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRIKADKMAEMLT 249
+ A L+ AA E EEES+ + E+FL G ++D FL +F KR + H RR K +K+ +++
Sbjct: 329 ALQARLKVAAHEAEEESDNIAEDFLEGKTEIDDFLNSFKEKRTICHCRRAKEEKLHQVIA 388
Query: 250 KRNSFGSP 257
+ F +P
Sbjct: 389 MHSQFHAP 396
>sp|Q86XT2|VP37D_HUMAN Vacuolar protein sorting-associated protein 37D OS=Homo sapiens
GN=VPS37D PE=1 SV=2
Length = 251
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 25/203 (12%)
Query: 129 QKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVST 188
++E +ASN +LA+ NL+ L ++ L ++L +++++ K++ ++ + S
Sbjct: 53 EREACLASNYALAKENLALRPRLEMGRAALAIKYQELREVAENCADKLQRLEESMHRWSP 112
Query: 189 DTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRIKADKMAEML 248
L LQ E E+E+E+ E+ L G ++ FL F R L HLRR +A+K+ E+L
Sbjct: 113 HCALGWLQAELEEAEQEAEEQMEQLLLGEQSLEAFLPAFQRGRALAHLRRTQAEKLQELL 172
Query: 249 TKRNSFGSPTHNGVG--------------GHNGGSSSFGGMYPPV---PVPPM--GPGYP 289
+R P G G + PP+ PVPP+ PG P
Sbjct: 173 RRRERSAQPAPTSAADPPKSFPAAAVLPTGAARGPPAVPRSLPPLDSRPVPPLKGSPGCP 232
Query: 290 VSGGGMPLPHIQMTPYPQLPQMP 312
+ G PL ++P P P+ P
Sbjct: 233 L--GPAPL----LSPRPSQPEPP 249
>sp|Q810I0|VP37D_MOUSE Vacuolar protein sorting-associated protein 37D OS=Mus musculus
GN=Vps37d PE=2 SV=2
Length = 261
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 67/123 (54%)
Query: 129 QKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVST 188
+++ +ASN +LA+ NL+ L ++ L ++L +++++ K++ ++ + S
Sbjct: 53 ERDACLASNYALAKENLALRPRLEMGRTALAIKYQELREVAENCADKLQRLEKSMHRWSP 112
Query: 189 DTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRIKADKMAEML 248
L LQ E E+E+E E+ L G ++ FL F R L HLRR +A+K+ E+L
Sbjct: 113 QCALGWLQAELEEAEQEAEVQMEQLLLGEQSLEAFLPAFQRGRALAHLRRTQAEKLQEVL 172
Query: 249 TKR 251
+R
Sbjct: 173 RRR 175
>sp|Q9SCP9|VP371_ARATH Vacuolar protein-sorting-associated protein 37 homolog 1
OS=Arabidopsis thaliana GN=VPS37-1 PE=1 SV=1
Length = 217
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 15/106 (14%)
Query: 140 LAEYNLSQEEALLEKKSQ--------LLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTV 191
LA NL +E ++E ++Q L E+L +L + E E++K + S ++
Sbjct: 107 LARDNLEKEPQIMELRNQCRIIRTTELATAQEKLNELERQKE---EILKFY----SPGSL 159
Query: 192 LALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLR 237
L LQ A ++++EESE + E+FL ID F++ + R H R
Sbjct: 160 LHKLQEAMNQVDEESEALQEKFLEKEIDTAAFVQKYKKLRTTYHRR 205
>sp|Q3EBL9|VP372_ARATH Vacuolar protein-sorting-associated protein 37 homolog 2
OS=Arabidopsis thaliana GN=VPS37-2 PE=1 SV=1
Length = 218
Score = 35.8 bits (81), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 15/124 (12%)
Query: 122 ETTESNEQKEMLIASNKSLAEYNLSQEEALLE--------KKSQLLDLNEQLTQLSKSVE 173
+ T N +E L LA NL +E ++E + S+L E+L +L E
Sbjct: 89 QVTIQNNIREELRKETLHLARENLEKEPQIVELRNQCRIIRTSELATAQEKLNELENQRE 148
Query: 174 SKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRIL 233
E++K + S ++L LQ A ++++EESE++ ++F+ ID F++ + R
Sbjct: 149 ---EILKFY----SPGSLLHRLQDAMNQVDEESEELQQKFMEKDIDTAAFVQKYKKLRSK 201
Query: 234 MHLR 237
H R
Sbjct: 202 YHRR 205
>sp|A8AVU9|RNY_STRGC Ribonuclease Y OS=Streptococcus gordonii (strain Challis / ATCC
35105 / CH1 / DL1 / V288) GN=rny PE=3 SV=1
Length = 535
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 31/173 (17%)
Query: 73 LLDLNEQLTQLSKSVESKVELI-KSHKNNVSTDTVLALLQTA--ASEIEEESETTESNEQ 129
LL+ ++ T L E + ++I K K ++ ALL+ A + EE E +E+
Sbjct: 37 LLNAEQEATNLRGQAEREADIILKDAKRETNSLKKEALLEAKEEARKYREEVEAEFKSER 96
Query: 130 KEM------LIASNKSL--AEYNLSQEEALLEKKSQLL--------DLNEQLTQLSKSVE 173
+E+ L SL + NL+ +E LLE+K Q L + EQL +L K E
Sbjct: 97 QELKQTESRLTERAASLDRKDDNLTNKEKLLEQKEQSLSDKTKYIDEREEQLAELEKQKE 156
Query: 174 SKVELIKSHKNNVSTDTVLA------------LLQTAASEIEEESEKVPEEFL 214
+++E + S N + D +LA ++ A E++E S+K+ ++ L
Sbjct: 157 AELERVASLSQNEARDLILAQTEEKLTKEIAMRIREAEQEVKERSDKMAKDIL 209
>sp|Q96YR5|RAD50_SULTO DNA double-strand break repair Rad50 ATPase OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=rad50 PE=3 SV=2
Length = 879
Score = 31.6 bits (70), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 162 NEQLTQLSKSVESKVELIKSHKNNVS-TDTVLALLQTAASEI---EEESEKVPEEFLNGT 217
N LTQ + +E +++ IK +N + DT+LA ++TA +I EEE +K+ +E
Sbjct: 593 NTDLTQKIRDIEKRIQEIKGKENKLRELDTLLAKIETAKQKIKQNEEEIKKLTDELQLLN 652
Query: 218 IDVDKFLETFTPKRIL 233
D ++F + K +L
Sbjct: 653 FDPNRFQQIKREKEVL 668
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.305 0.124 0.327
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,127,029
Number of Sequences: 539616
Number of extensions: 5009198
Number of successful extensions: 27278
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 1530
Number of HSP's that attempted gapping in prelim test: 24614
Number of HSP's gapped (non-prelim): 3553
length of query: 320
length of database: 191,569,459
effective HSP length: 117
effective length of query: 203
effective length of database: 128,434,387
effective search space: 26072180561
effective search space used: 26072180561
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 61 (28.1 bits)