Query psy1409
Match_columns 320
No_of_seqs 229 out of 343
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 19:16:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07200 Mod_r: Modifier of ru 100.0 4.1E-32 9E-37 234.1 14.5 146 99-244 2-150 (150)
2 PF07200 Mod_r: Modifier of ru 99.9 2.5E-26 5.4E-31 198.1 15.7 150 8-179 1-150 (150)
3 KOG3270|consensus 99.4 5E-14 1.1E-18 129.5 3.1 158 2-245 67-233 (244)
4 KOG3270|consensus 98.6 3.2E-07 6.9E-12 84.9 11.0 166 59-250 24-189 (244)
5 KOG1924|consensus 97.7 0.01 2.2E-07 63.1 22.5 15 199-213 469-483 (1102)
6 KOG1924|consensus 96.7 0.21 4.5E-06 53.5 19.4 73 62-137 363-435 (1102)
7 PF07888 CALCOCO1: Calcium bin 96.3 0.63 1.4E-05 48.4 20.3 61 37-97 144-204 (546)
8 KOG0774|consensus 96.1 1 2.2E-05 42.7 18.6 46 202-250 217-262 (334)
9 KOG2129|consensus 95.7 2.8 6.1E-05 42.3 20.8 43 44-86 159-201 (552)
10 COG3883 Uncharacterized protei 94.6 4.3 9.3E-05 38.7 23.7 141 38-182 47-191 (265)
11 PF11802 CENP-K: Centromere-as 94.0 5.9 0.00013 37.8 19.7 135 71-229 52-186 (268)
12 KOG2391|consensus 93.8 3.7 8.1E-05 40.3 15.8 32 208-239 321-353 (365)
13 TIGR00606 rad50 rad50. This fa 93.8 16 0.00034 42.2 29.1 167 62-234 886-1063(1311)
14 PF07888 CALCOCO1: Calcium bin 93.2 12 0.00027 39.0 28.0 62 38-99 138-199 (546)
15 COG5185 HEC1 Protein involved 92.3 8.6 0.00019 39.5 16.3 144 37-185 265-425 (622)
16 PRK11637 AmiB activator; Provi 92.2 14 0.0003 37.2 33.0 30 62-91 94-123 (428)
17 TIGR02168 SMC_prok_B chromosom 91.7 25 0.00054 38.9 28.5 7 196-202 439-445 (1179)
18 KOG1923|consensus 91.2 0.66 1.4E-05 49.7 7.4 18 251-268 276-293 (830)
19 KOG2129|consensus 90.9 14 0.0003 37.5 15.9 37 130-166 160-196 (552)
20 PF10174 Cast: RIM-binding pro 90.8 29 0.00062 38.0 24.1 36 62-97 285-320 (775)
21 KOG4403|consensus 90.8 21 0.00045 36.4 18.0 99 10-113 238-344 (575)
22 KOG0996|consensus 90.6 35 0.00076 38.8 23.2 58 193-250 538-595 (1293)
23 PRK11637 AmiB activator; Provi 90.5 20 0.00044 35.9 22.7 27 65-91 90-116 (428)
24 TIGR00606 rad50 rad50. This fa 90.1 42 0.0009 38.8 29.0 68 44-113 724-791 (1311)
25 KOG0995|consensus 89.9 28 0.00061 36.5 18.3 36 147-182 351-386 (581)
26 PF08317 Spc7: Spc7 kinetochor 89.7 21 0.00045 34.7 17.2 83 14-97 156-242 (325)
27 PRK10929 putative mechanosensi 89.4 44 0.00095 38.1 21.6 35 66-100 104-138 (1109)
28 PF04108 APG17: Autophagy prot 89.4 26 0.00056 35.3 27.0 138 99-249 232-370 (412)
29 TIGR02169 SMC_prok_A chromosom 89.1 42 0.00091 37.4 28.6 14 15-28 675-688 (1164)
30 KOG2675|consensus 88.4 12 0.00025 38.2 13.3 21 220-240 156-176 (480)
31 KOG2391|consensus 88.3 1.3 2.9E-05 43.3 6.6 14 241-254 125-139 (365)
32 PF15254 CCDC14: Coiled-coil d 88.3 43 0.00093 36.5 19.0 92 68-159 391-493 (861)
33 COG1340 Uncharacterized archae 88.2 26 0.00056 33.9 26.3 12 100-111 106-117 (294)
34 KOG1029|consensus 88.1 45 0.00098 36.5 21.6 21 219-239 564-584 (1118)
35 PF06785 UPF0242: Uncharacteri 87.9 30 0.00064 34.2 16.5 52 15-71 76-127 (401)
36 KOG4451|consensus 87.7 24 0.00053 33.0 15.3 42 221-262 157-199 (286)
37 KOG0250|consensus 87.7 54 0.0012 37.0 19.3 107 66-183 223-329 (1074)
38 COG1196 Smc Chromosome segrega 87.5 59 0.0013 37.1 27.8 32 151-182 399-430 (1163)
39 PRK04778 septation ring format 87.4 41 0.00088 35.3 22.0 81 16-97 200-294 (569)
40 KOG2236|consensus 87.4 1.2 2.6E-05 45.2 5.9 12 285-296 436-447 (483)
41 KOG0980|consensus 86.8 55 0.0012 36.2 22.4 45 37-81 362-406 (980)
42 PF13949 ALIX_LYPXL_bnd: ALIX 86.8 28 0.0006 32.7 15.0 48 189-239 244-294 (296)
43 KOG3753|consensus 86.7 1.1 2.3E-05 48.8 5.3 12 220-231 714-725 (1114)
44 PF09789 DUF2353: Uncharacteri 86.5 34 0.00075 33.5 20.0 85 124-208 122-214 (319)
45 PF10146 zf-C4H2: Zinc finger- 86.3 29 0.00062 32.4 16.3 6 307-312 190-195 (230)
46 PF14662 CCDC155: Coiled-coil 86.0 27 0.00058 31.8 23.3 121 39-182 4-128 (193)
47 PF10168 Nup88: Nuclear pore c 85.9 57 0.0012 35.5 19.9 59 42-100 557-615 (717)
48 PF08614 ATG16: Autophagy prot 85.7 15 0.00033 32.9 11.6 63 123-185 118-180 (194)
49 PF12128 DUF3584: Protein of u 85.2 77 0.0017 36.4 25.0 42 170-211 750-792 (1201)
50 KOG0995|consensus 85.0 55 0.0012 34.5 20.8 115 126-242 271-393 (581)
51 TIGR03752 conj_TIGR03752 integ 84.6 4.4 9.5E-05 41.5 8.3 68 8-76 39-106 (472)
52 PHA02562 46 endonuclease subun 84.0 54 0.0012 33.6 22.3 14 168-181 356-369 (562)
53 PF02403 Seryl_tRNA_N: Seryl-t 83.6 14 0.00029 29.8 9.4 51 49-99 7-57 (108)
54 PF15066 CAGE1: Cancer-associa 83.1 60 0.0013 33.5 18.6 123 13-137 347-476 (527)
55 PF05667 DUF812: Protein of un 82.5 72 0.0016 33.9 23.2 156 40-197 332-495 (594)
56 PF05667 DUF812: Protein of un 82.4 72 0.0016 33.9 16.6 81 14-95 335-425 (594)
57 COG1196 Smc Chromosome segrega 82.2 99 0.0021 35.3 27.8 8 239-246 919-926 (1163)
58 cd09235 V_Alix Middle V-domain 82.2 52 0.0011 32.1 19.0 47 188-237 290-339 (339)
59 COG4026 Uncharacterized protei 81.8 16 0.00035 34.1 10.1 55 46-100 145-206 (290)
60 PF14662 CCDC155: Coiled-coil 81.8 41 0.00089 30.6 24.5 114 37-169 23-136 (193)
61 COG1579 Zn-ribbon protein, pos 81.7 47 0.001 31.3 19.5 33 62-94 50-82 (239)
62 PF09787 Golgin_A5: Golgin sub 81.7 65 0.0014 33.4 15.8 46 45-90 276-321 (511)
63 KOG0972|consensus 81.2 56 0.0012 31.8 14.9 157 44-209 189-354 (384)
64 PF10498 IFT57: Intra-flagella 80.7 54 0.0012 32.6 14.2 164 43-209 181-347 (359)
65 KOG0980|consensus 80.4 1E+02 0.0022 34.3 22.7 43 53-95 413-455 (980)
66 PF00038 Filament: Intermediat 80.2 54 0.0012 31.1 22.2 81 14-95 4-85 (312)
67 KOG4643|consensus 79.6 1.1E+02 0.0025 34.4 24.6 85 121-208 544-633 (1195)
68 PF12128 DUF3584: Protein of u 79.1 1.3E+02 0.0028 34.7 20.8 36 191-226 512-547 (1201)
69 PRK04863 mukB cell division pr 79.1 1.4E+02 0.0031 35.2 21.9 22 174-195 477-498 (1486)
70 PF15397 DUF4618: Domain of un 79.0 51 0.0011 31.4 12.7 43 126-168 11-53 (258)
71 PRK11281 hypothetical protein; 78.9 1.3E+02 0.0028 34.6 22.3 19 123-141 194-212 (1113)
72 PF06005 DUF904: Protein of un 78.0 29 0.00062 26.6 10.4 32 39-70 21-52 (72)
73 PF07106 TBPIP: Tat binding pr 77.3 49 0.0011 28.8 12.1 53 63-115 71-123 (169)
74 KOG1853|consensus 76.7 72 0.0016 30.5 17.3 59 16-75 26-84 (333)
75 KOG4643|consensus 76.6 1.4E+02 0.003 33.8 26.6 84 22-106 258-350 (1195)
76 KOG1984|consensus 76.1 7.6 0.00016 42.6 7.0 12 285-296 190-201 (1007)
77 PF12329 TMF_DNA_bd: TATA elem 75.4 34 0.00074 26.2 8.8 63 38-100 7-69 (74)
78 PRK09039 hypothetical protein; 75.4 87 0.0019 30.8 16.1 64 148-213 136-199 (343)
79 PRK02224 chromosome segregatio 75.4 1.3E+02 0.0028 32.9 28.3 12 198-209 385-396 (880)
80 PF15035 Rootletin: Ciliary ro 75.3 62 0.0013 29.1 14.3 56 100-155 59-115 (182)
81 PF10191 COG7: Golgi complex c 74.8 1.4E+02 0.0029 32.8 21.3 191 23-232 29-228 (766)
82 KOG1923|consensus 74.3 5.2 0.00011 43.1 5.2 24 193-217 220-243 (830)
83 PF06785 UPF0242: Uncharacteri 74.2 96 0.0021 30.8 18.0 75 139-213 138-217 (401)
84 KOG0999|consensus 74.1 1.2E+02 0.0027 32.0 24.9 154 57-212 43-216 (772)
85 PF08614 ATG16: Autophagy prot 74.1 11 0.00024 33.8 6.7 23 193-215 161-183 (194)
86 PF09304 Cortex-I_coil: Cortex 73.1 36 0.00079 28.1 8.8 56 39-94 19-74 (107)
87 PRK09039 hypothetical protein; 72.7 1E+02 0.0022 30.3 21.1 93 37-136 47-152 (343)
88 KOG1029|consensus 72.6 1.6E+02 0.0034 32.6 18.5 12 221-232 638-649 (1118)
89 PRK04863 mukB cell division pr 72.5 2.1E+02 0.0045 33.9 26.1 44 96-139 428-474 (1486)
90 KOG0161|consensus 72.3 2.4E+02 0.0051 34.4 28.9 120 42-163 1054-1174(1930)
91 PF04111 APG6: Autophagy prote 71.9 37 0.00081 33.0 10.2 75 14-90 16-90 (314)
92 PF15290 Syntaphilin: Golgi-lo 71.6 93 0.002 30.1 12.3 32 64-95 68-99 (305)
93 PF13514 AAA_27: AAA domain 71.6 1.9E+02 0.004 32.9 24.7 103 148-256 895-1000(1111)
94 KOG0250|consensus 71.6 1.9E+02 0.004 32.9 25.5 40 59-98 290-329 (1074)
95 KOG2652|consensus 71.6 41 0.00088 33.2 10.2 37 201-247 14-50 (348)
96 KOG0996|consensus 71.5 2E+02 0.0043 33.2 23.4 54 126-179 512-565 (1293)
97 PF02403 Seryl_tRNA_N: Seryl-t 71.2 22 0.00048 28.5 7.3 53 133-185 6-58 (108)
98 PRK04778 septation ring format 70.8 1.4E+02 0.0031 31.3 25.8 105 125-233 380-484 (569)
99 PF09204 Colicin_immun: Bacter 70.6 4 8.7E-05 32.5 2.6 21 208-228 7-27 (88)
100 TIGR02680 conserved hypothetic 70.3 2.2E+02 0.0048 33.3 22.8 161 6-177 212-382 (1353)
101 PRK15422 septal ring assembly 70.2 50 0.0011 25.8 9.4 44 42-89 24-67 (79)
102 COG3074 Uncharacterized protei 70.2 47 0.001 25.5 9.7 56 45-100 20-75 (79)
103 PF04156 IncA: IncA protein; 69.8 77 0.0017 27.8 14.6 31 65-95 117-147 (191)
104 TIGR02449 conserved hypothetic 69.5 46 0.001 25.1 8.5 60 38-97 2-61 (65)
105 PRK03918 chromosome segregatio 69.4 1.8E+02 0.0038 31.8 25.4 27 66-92 195-221 (880)
106 cd08915 V_Alix_like Protein-in 69.3 1.1E+02 0.0025 29.6 19.4 47 188-237 293-342 (342)
107 COG5185 HEC1 Protein involved 69.0 1.5E+02 0.0033 30.8 20.3 72 148-232 350-424 (622)
108 KOG0971|consensus 68.9 2E+02 0.0044 32.3 26.5 26 206-231 446-471 (1243)
109 KOG0161|consensus 68.7 2.8E+02 0.006 33.8 26.8 36 123-158 994-1029(1930)
110 KOG2893|consensus 68.5 22 0.00049 33.5 7.4 30 236-265 90-120 (341)
111 KOG0612|consensus 68.4 2.3E+02 0.005 32.7 27.3 59 123-181 583-641 (1317)
112 KOG4403|consensus 68.3 48 0.001 33.9 10.1 75 123-197 261-343 (575)
113 KOG1899|consensus 67.9 1.8E+02 0.0039 31.3 21.8 16 304-319 396-411 (861)
114 KOG4274|consensus 67.9 25 0.00053 37.1 8.2 81 218-303 46-132 (742)
115 KOG4673|consensus 67.8 1.9E+02 0.0041 31.5 22.2 35 41-75 451-485 (961)
116 PF10473 CENP-F_leu_zip: Leuci 67.7 81 0.0018 27.3 14.5 81 14-95 10-90 (140)
117 PF09304 Cortex-I_coil: Cortex 67.2 70 0.0015 26.5 9.2 57 39-95 33-89 (107)
118 PF00038 Filament: Intermediat 66.9 1.2E+02 0.0025 28.8 23.6 51 39-89 78-128 (312)
119 PF10018 Med4: Vitamin-D-recep 66.5 96 0.0021 27.7 12.1 22 161-182 27-48 (188)
120 PF14992 TMCO5: TMCO5 family 66.4 95 0.0021 29.9 11.4 37 19-56 47-83 (280)
121 PRK03918 chromosome segregatio 65.9 2.1E+02 0.0045 31.2 27.7 11 85-95 570-580 (880)
122 PF09730 BicD: Microtubule-ass 65.7 2.1E+02 0.0045 31.3 19.4 150 21-184 27-181 (717)
123 PF06005 DUF904: Protein of un 64.7 61 0.0013 24.8 9.8 64 29-93 5-68 (72)
124 KOG4302|consensus 64.4 2.1E+02 0.0046 30.9 17.0 97 64-179 160-263 (660)
125 KOG4672|consensus 64.3 26 0.00057 35.4 7.4 100 80-182 26-125 (487)
126 PRK13729 conjugal transfer pil 64.2 65 0.0014 33.3 10.4 13 170-182 76-88 (475)
127 KOG0976|consensus 63.9 2.4E+02 0.0053 31.4 26.3 20 220-239 349-370 (1265)
128 KOG4005|consensus 63.8 74 0.0016 30.1 9.8 38 123-160 106-143 (292)
129 PF09744 Jnk-SapK_ap_N: JNK_SA 63.3 1.1E+02 0.0023 27.0 17.6 61 121-184 89-152 (158)
130 PF10174 Cast: RIM-binding pro 63.0 2.4E+02 0.0053 31.1 24.3 58 42-99 300-357 (775)
131 KOG0976|consensus 63.0 2.5E+02 0.0055 31.3 22.9 34 149-182 176-209 (1265)
132 KOG1830|consensus 62.9 27 0.00059 35.5 7.2 18 212-229 222-239 (518)
133 PF04156 IncA: IncA protein; 62.6 1.1E+02 0.0023 26.9 15.3 31 65-95 82-112 (191)
134 PF11593 Med3: Mediator comple 62.3 34 0.00073 34.2 7.7 82 9-94 6-95 (379)
135 PF14817 HAUS5: HAUS augmin-li 62.2 2E+02 0.0044 30.9 14.0 36 62-97 302-337 (632)
136 PF09454 Vps23_core: Vps23 cor 59.9 62 0.0014 24.2 7.2 35 197-231 19-53 (65)
137 COG1340 Uncharacterized archae 59.9 1.7E+02 0.0038 28.4 23.2 18 199-216 202-219 (294)
138 COG0541 Ffh Signal recognition 59.3 18 0.00039 36.9 5.4 52 184-235 282-344 (451)
139 PF13908 Shisa: Wnt and FGF in 59.1 34 0.00074 30.1 6.7 12 304-315 168-179 (179)
140 PRK10884 SH3 domain-containing 58.9 1.5E+02 0.0032 27.2 11.0 8 133-140 137-144 (206)
141 KOG4674|consensus 58.7 4E+02 0.0088 32.2 23.6 23 124-146 181-203 (1822)
142 KOG0971|consensus 58.7 3.1E+02 0.0068 30.9 25.0 178 39-229 320-532 (1243)
143 PF03276 Gag_spuma: Spumavirus 58.7 85 0.0018 33.0 10.1 7 184-190 120-126 (582)
144 PF05622 HOOK: HOOK protein; 58.3 3.3 7.1E-05 44.5 0.0 65 149-213 576-645 (713)
145 PF12325 TMF_TATA_bd: TATA ele 58.3 1.1E+02 0.0024 25.7 14.8 34 65-98 17-50 (120)
146 PF05600 DUF773: Protein of un 58.0 99 0.0021 32.2 10.7 81 3-88 411-491 (507)
147 PF08317 Spc7: Spc7 kinetochor 57.9 1.9E+02 0.004 28.1 21.4 41 144-184 204-244 (325)
148 TIGR02894 DNA_bind_RsfA transc 56.3 1E+02 0.0022 27.3 8.9 46 48-93 102-147 (161)
149 KOG4672|consensus 55.4 31 0.00068 34.9 6.2 11 219-229 287-297 (487)
150 KOG2893|consensus 55.1 41 0.00088 31.9 6.6 17 188-204 48-64 (341)
151 cd09236 V_AnPalA_UmRIM20_like 55.0 2.2E+02 0.0047 28.0 16.3 46 189-237 305-353 (353)
152 cd07307 BAR The Bin/Amphiphysi 54.3 1.3E+02 0.0028 25.1 15.4 21 220-240 166-186 (194)
153 KOG0917|consensus 54.3 2.1E+02 0.0046 27.7 13.6 17 239-255 141-157 (338)
154 KOG4005|consensus 53.8 82 0.0018 29.8 8.3 79 6-85 59-146 (292)
155 PF05384 DegS: Sensor protein 53.6 1.6E+02 0.0034 26.0 20.1 75 39-113 9-86 (159)
156 TIGR02894 DNA_bind_RsfA transc 53.1 1.7E+02 0.0036 26.0 12.4 79 72-156 54-132 (161)
157 PF05461 ApoL: Apolipoprotein 52.6 1.1E+02 0.0024 29.8 9.5 83 11-94 2-95 (313)
158 PF10234 Cluap1: Clusterin-ass 52.4 2.2E+02 0.0048 27.3 15.1 34 84-117 141-174 (267)
159 KOG0977|consensus 52.3 3.1E+02 0.0067 29.0 20.7 41 189-229 341-384 (546)
160 KOG4674|consensus 52.1 5.1E+02 0.011 31.4 24.7 77 62-138 1262-1341(1822)
161 PF01213 CAP_N: Adenylate cycl 52.1 2.4E+02 0.0052 27.6 14.4 21 220-240 152-172 (312)
162 cd09237 V_ScBro1_like Protein- 52.1 2.4E+02 0.0052 27.6 18.8 37 66-102 196-232 (356)
163 PF08687 ASD2: Apx/Shroom doma 52.0 2.2E+02 0.0048 27.2 14.2 39 62-100 181-219 (264)
164 TIGR00959 ffh signal recogniti 51.6 38 0.00082 34.4 6.4 51 184-234 282-343 (428)
165 KOG0946|consensus 51.6 3.8E+02 0.0083 29.8 22.3 56 42-97 663-718 (970)
166 PRK09841 cryptic autophosphory 51.5 3.5E+02 0.0075 29.3 15.2 19 117-135 335-353 (726)
167 PF14193 DUF4315: Domain of un 51.3 84 0.0018 24.8 6.9 17 98-114 45-61 (83)
168 cd09238 V_Alix_like_1 Protein- 51.3 2.4E+02 0.0053 27.5 15.8 45 190-237 292-339 (339)
169 PRK00771 signal recognition pa 51.2 31 0.00068 35.1 5.7 51 184-234 275-336 (437)
170 PF05557 MAD: Mitotic checkpoi 50.9 81 0.0018 34.0 9.1 120 63-182 502-639 (722)
171 PF06160 EzrA: Septation ring 50.8 3.2E+02 0.0069 28.7 23.8 27 222-248 397-423 (560)
172 PF09728 Taxilin: Myosin-like 50.8 2.4E+02 0.0053 27.3 25.5 19 45-63 31-49 (309)
173 PRK14127 cell division protein 50.4 56 0.0012 27.0 6.1 45 22-74 24-68 (109)
174 KOG4302|consensus 50.4 3.6E+02 0.0078 29.2 15.0 33 63-95 109-141 (660)
175 PF12238 MSA-2c: Merozoite sur 50.3 2.1E+02 0.0045 26.4 13.2 28 241-268 128-156 (205)
176 PRK05431 seryl-tRNA synthetase 50.2 1.3E+02 0.0028 30.5 9.9 31 71-101 28-58 (425)
177 COG2433 Uncharacterized conser 50.1 3.5E+02 0.0077 29.0 17.1 155 56-213 330-504 (652)
178 smart00787 Spc7 Spc7 kinetocho 49.5 2.6E+02 0.0056 27.2 21.2 72 19-95 94-171 (312)
179 TIGR03752 conj_TIGR03752 integ 48.8 87 0.0019 32.4 8.3 41 122-162 67-107 (472)
180 PF15070 GOLGA2L5: Putative go 48.7 3.7E+02 0.008 28.8 24.5 25 131-155 104-128 (617)
181 PF04124 Dor1: Dor1-like famil 48.4 2.7E+02 0.0058 27.1 18.9 86 7-99 3-88 (338)
182 PF09726 Macoilin: Transmembra 48.1 4E+02 0.0087 29.0 18.6 28 195-223 592-621 (697)
183 PF06156 DUF972: Protein of un 48.0 85 0.0018 25.8 6.8 39 37-75 16-54 (107)
184 TIGR01628 PABP-1234 polyadenyl 47.9 52 0.0011 34.0 6.9 12 100-111 189-200 (562)
185 TIGR00414 serS seryl-tRNA synt 47.7 2.1E+02 0.0045 28.9 10.9 31 70-100 29-59 (418)
186 KOG0132|consensus 47.6 56 0.0012 35.7 7.0 8 299-306 626-633 (894)
187 PF10186 Atg14: UV radiation r 47.5 2.3E+02 0.005 26.1 17.3 11 285-295 218-228 (302)
188 PF07464 ApoLp-III: Apolipopho 47.4 1.4E+02 0.0031 26.1 8.5 22 192-213 94-115 (155)
189 KOG0964|consensus 46.9 4.9E+02 0.011 29.7 23.4 14 285-298 588-601 (1200)
190 PRK10328 DNA binding protein, 46.9 90 0.002 26.7 7.0 53 3-58 13-67 (134)
191 KOG2751|consensus 46.7 2.4E+02 0.0053 28.8 11.0 59 11-72 147-205 (447)
192 PF02609 Exonuc_VII_S: Exonucl 46.5 89 0.0019 22.0 5.9 41 205-245 7-47 (53)
193 PF10241 KxDL: Uncharacterized 45.4 1.5E+02 0.0032 23.3 9.2 56 44-99 23-78 (88)
194 PF09738 DUF2051: Double stran 45.3 3E+02 0.0065 26.8 11.4 56 39-94 87-142 (302)
195 KOG1853|consensus 45.0 2.9E+02 0.0063 26.5 17.8 56 39-94 27-82 (333)
196 KOG4196|consensus 44.8 2E+02 0.0044 24.7 9.8 38 54-91 78-115 (135)
197 PRK05431 seryl-tRNA synthetase 44.7 1.3E+02 0.0028 30.5 8.9 52 134-186 7-58 (425)
198 PRK11281 hypothetical protein; 44.6 5.5E+02 0.012 29.6 22.1 51 130-180 280-330 (1113)
199 PF10234 Cluap1: Clusterin-ass 44.5 2.4E+02 0.0052 27.0 10.2 22 54-75 187-208 (267)
200 COG5244 NIP100 Dynactin comple 44.2 1.7E+02 0.0036 30.6 9.4 56 42-97 190-248 (669)
201 KOG4460|consensus 44.0 3.9E+02 0.0085 28.5 12.1 115 61-196 585-700 (741)
202 PLN02939 transferase, transfer 43.8 5.4E+02 0.012 29.3 22.2 27 50-76 226-252 (977)
203 PLN02320 seryl-tRNA synthetase 43.7 1.5E+02 0.0033 30.9 9.3 31 71-101 93-123 (502)
204 KOG0307|consensus 43.6 73 0.0016 35.9 7.3 68 251-319 769-842 (1049)
205 KOG0249|consensus 43.2 4.9E+02 0.011 28.7 17.4 16 58-73 113-128 (916)
206 KOG0946|consensus 43.2 5.1E+02 0.011 28.9 21.9 43 12-55 648-690 (970)
207 PF12329 TMF_DNA_bd: TATA elem 43.0 1.5E+02 0.0032 22.6 8.2 56 130-185 14-69 (74)
208 PF04849 HAP1_N: HAP1 N-termin 42.9 3.3E+02 0.0072 26.6 23.7 69 10-80 51-120 (306)
209 PF11567 PfUIS3: Plasmodium fa 42.9 48 0.001 26.6 4.3 31 5-35 36-66 (101)
210 PF12718 Tropomyosin_1: Tropom 42.3 2.2E+02 0.0048 24.4 16.2 34 50-83 21-54 (143)
211 COG1579 Zn-ribbon protein, pos 42.2 3E+02 0.0065 25.9 20.9 21 190-210 142-162 (239)
212 PRK10361 DNA recombination pro 42.2 4.2E+02 0.009 27.5 18.8 158 13-191 32-189 (475)
213 PF04849 HAP1_N: HAP1 N-termin 42.1 3.4E+02 0.0074 26.5 14.4 17 220-236 278-294 (306)
214 TIGR01425 SRP54_euk signal rec 41.9 62 0.0013 33.0 6.2 51 184-234 282-343 (429)
215 TIGR03007 pepcterm_ChnLen poly 41.7 3.9E+02 0.0084 27.1 22.5 20 140-159 266-285 (498)
216 PF15397 DUF4618: Domain of un 41.4 3.2E+02 0.007 26.0 19.6 76 10-85 34-109 (258)
217 PF09738 DUF2051: Double stran 41.2 2.6E+02 0.0057 27.2 10.0 83 12-99 78-161 (302)
218 PRK10803 tol-pal system protei 41.0 1.3E+02 0.0029 28.3 7.9 43 58-100 55-97 (263)
219 PF09726 Macoilin: Transmembra 41.0 5.1E+02 0.011 28.2 19.5 85 125-209 549-638 (697)
220 COG1256 FlgK Flagellar hook-as 40.9 3.4E+02 0.0073 28.7 11.5 84 13-97 94-189 (552)
221 KOG2675|consensus 40.7 82 0.0018 32.2 6.6 12 158-169 114-125 (480)
222 PF07795 DUF1635: Protein of u 39.9 2.1E+02 0.0046 26.5 8.7 57 151-212 3-59 (214)
223 KOG0612|consensus 39.8 6.7E+02 0.015 29.2 24.7 17 194-210 718-734 (1317)
224 PF07303 Occludin_ELL: Occludi 39.8 2E+02 0.0044 23.2 8.5 85 153-249 12-97 (101)
225 PF12325 TMF_TATA_bd: TATA ele 39.7 2.3E+02 0.0049 23.8 10.5 72 104-181 15-86 (120)
226 PF05218 DUF713: Protein of un 39.7 2.8E+02 0.0061 24.8 17.1 127 65-213 2-131 (182)
227 PF15035 Rootletin: Ciliary ro 39.7 2.8E+02 0.0061 24.8 9.4 56 126-181 65-120 (182)
228 PRK10698 phage shock protein P 39.2 3.1E+02 0.0067 25.2 14.5 34 176-209 149-185 (222)
229 KOG3841|consensus 39.1 2.3E+02 0.0049 28.7 9.2 19 284-302 207-225 (455)
230 cd07620 BAR_SH3BP1 The Bin/Amp 39.0 3.5E+02 0.0076 25.8 20.9 89 162-250 127-239 (257)
231 PF05529 Bap31: B-cell recepto 38.9 2.1E+02 0.0046 25.3 8.5 37 58-94 155-191 (192)
232 PRK10867 signal recognition pa 38.8 50 0.0011 33.6 5.0 51 184-234 283-344 (433)
233 PF07106 TBPIP: Tat binding pr 38.8 2.6E+02 0.0056 24.2 12.5 87 148-238 71-165 (169)
234 PF09849 DUF2076: Uncharacteri 38.7 1.9E+02 0.0042 27.3 8.5 10 241-250 64-73 (247)
235 KOG2398|consensus 38.7 5.2E+02 0.011 27.7 19.1 84 148-231 145-236 (611)
236 KOG3671|consensus 38.4 94 0.002 32.4 6.7 7 223-229 291-297 (569)
237 KOG1984|consensus 38.3 78 0.0017 35.1 6.4 13 295-307 221-234 (1007)
238 COG3028 Uncharacterized protei 37.8 3.1E+02 0.0067 24.8 10.7 99 128-230 37-144 (187)
239 cd07596 BAR_SNX The Bin/Amphip 37.6 2.7E+02 0.006 24.1 21.8 27 219-247 189-215 (218)
240 PF08429 PLU-1: PLU-1-like pro 37.4 3.8E+02 0.0081 25.7 13.5 42 10-53 82-123 (335)
241 PF05911 DUF869: Plant protein 37.1 6.1E+02 0.013 28.0 20.7 203 4-211 514-744 (769)
242 TIGR03545 conserved hypothetic 37.0 5.3E+02 0.011 27.2 12.7 53 56-108 156-216 (555)
243 KOG4761|consensus 36.6 1.5E+02 0.0032 28.2 7.2 23 286-308 222-244 (266)
244 PF09730 BicD: Microtubule-ass 36.5 6.1E+02 0.013 27.8 23.7 47 171-219 420-471 (717)
245 PF06156 DUF972: Protein of un 36.4 1.7E+02 0.0036 24.1 6.8 35 37-71 23-57 (107)
246 COG4372 Uncharacterized protei 35.8 4.9E+02 0.011 26.5 22.6 35 64-98 123-157 (499)
247 KOG3647|consensus 35.8 4.2E+02 0.0091 25.7 13.7 50 58-107 40-89 (338)
248 KOG1830|consensus 35.7 1.2E+02 0.0026 31.0 6.9 20 247-266 299-318 (518)
249 KOG1962|consensus 34.9 3.8E+02 0.0082 24.9 10.3 47 140-186 149-195 (216)
250 cd00176 SPEC Spectrin repeats, 34.7 2.8E+02 0.006 23.3 17.8 39 150-188 140-178 (213)
251 KOG0964|consensus 34.3 7.6E+02 0.016 28.3 20.6 35 63-97 719-753 (1200)
252 PF07889 DUF1664: Protein of u 34.2 2.9E+02 0.0063 23.4 10.9 32 151-182 91-122 (126)
253 PRK11032 hypothetical protein; 34.1 3.3E+02 0.0072 24.0 8.9 37 210-248 51-91 (160)
254 TIGR03545 conserved hypothetic 33.9 5.9E+02 0.013 26.9 12.9 23 78-100 164-186 (555)
255 PHA03190 UL14 tegument protein 33.9 3.7E+02 0.008 24.5 14.6 29 240-268 145-175 (196)
256 PHA02562 46 endonuclease subun 33.8 5.3E+02 0.012 26.3 26.9 32 147-178 342-373 (562)
257 PF07558 Shugoshin_N: Shugoshi 33.7 52 0.0011 22.9 2.9 41 46-86 3-43 (46)
258 KOG2264|consensus 33.5 2.9E+02 0.0063 29.6 9.3 59 39-104 96-154 (907)
259 KOG2199|consensus 33.4 5.4E+02 0.012 26.3 12.5 14 125-138 168-181 (462)
260 PF04977 DivIC: Septum formati 32.8 2E+02 0.0043 21.1 6.7 40 66-107 19-58 (80)
261 COG2433 Uncharacterized conser 32.4 6.6E+02 0.014 27.0 19.3 54 197-250 570-644 (652)
262 PF06818 Fez1: Fez1; InterPro 32.4 4E+02 0.0087 24.5 14.7 50 200-249 134-183 (202)
263 PRK15459 flagella synthesis ch 32.3 3.3E+02 0.0071 23.4 9.1 93 1-94 1-102 (140)
264 PF14197 Cep57_CLD_2: Centroso 32.0 2.2E+02 0.0049 21.4 8.6 22 158-179 42-63 (69)
265 KOG4182|consensus 32.0 6.4E+02 0.014 26.7 20.7 154 20-178 30-233 (828)
266 PLN02678 seryl-tRNA synthetase 31.8 4.4E+02 0.0095 27.1 10.4 32 70-101 32-63 (448)
267 PF02601 Exonuc_VII_L: Exonucl 31.5 4.6E+02 0.01 24.9 16.0 21 173-193 260-280 (319)
268 KOG4603|consensus 31.4 4E+02 0.0086 24.1 11.8 103 65-187 80-183 (201)
269 cd05030 calgranulins Calgranul 31.2 2.4E+02 0.0053 21.6 8.8 52 185-236 26-86 (88)
270 cd05022 S-100A13 S-100A13: S-1 31.1 2.5E+02 0.0055 22.0 6.9 72 162-238 7-84 (89)
271 PF13514 AAA_27: AAA domain 31.1 8.4E+02 0.018 27.8 26.9 156 64-227 680-850 (1111)
272 KOG0977|consensus 31.1 6.6E+02 0.014 26.6 22.8 24 187-210 239-262 (546)
273 PF06248 Zw10: Centromere/kine 31.0 6.4E+02 0.014 26.4 12.3 122 129-250 8-140 (593)
274 PRK13169 DNA replication intia 30.9 2.3E+02 0.0051 23.4 6.8 62 17-79 4-81 (110)
275 KOG0978|consensus 30.5 7.5E+02 0.016 27.0 25.6 12 42-53 366-377 (698)
276 KOG0993|consensus 30.3 4E+02 0.0087 27.4 9.4 47 77-123 106-152 (542)
277 TIGR00414 serS seryl-tRNA synt 30.3 3.8E+02 0.0081 27.1 9.6 53 134-186 7-60 (418)
278 cd07593 BAR_MUG137_fungi The B 30.2 4.4E+02 0.0095 24.3 21.0 59 190-250 146-207 (215)
279 PF15070 GOLGA2L5: Putative go 30.1 7.2E+02 0.016 26.7 29.0 94 119-214 158-261 (617)
280 PRK10869 recombination and rep 30.0 6.7E+02 0.014 26.3 17.6 148 13-165 210-378 (553)
281 PF15079 DUF4546: Domain of un 29.9 1.2E+02 0.0026 27.3 5.2 37 62-98 52-88 (205)
282 PF05377 FlaC_arch: Flagella a 29.9 2E+02 0.0043 21.0 5.5 38 66-103 16-53 (55)
283 KOG4592|consensus 29.9 1.2E+02 0.0025 32.6 5.8 10 309-318 239-251 (728)
284 PF07765 KIP1: KIP1-like prote 29.8 1.5E+02 0.0033 22.9 5.1 58 26-87 16-73 (74)
285 KOG4592|consensus 29.6 1.1E+02 0.0025 32.6 5.8 14 285-298 219-232 (728)
286 KOG0978|consensus 29.6 7.7E+02 0.017 26.9 23.8 30 192-221 568-597 (698)
287 PF06637 PV-1: PV-1 protein (P 29.6 6.1E+02 0.013 25.7 15.9 131 19-153 261-392 (442)
288 KOG4796|consensus 29.5 1.8E+02 0.0038 30.7 7.0 88 153-250 505-592 (604)
289 cd00179 SynN Syntaxin N-termin 29.4 3.3E+02 0.0072 22.6 15.2 25 151-175 90-114 (151)
290 COG3851 UhpB Signal transducti 29.4 2.1E+02 0.0046 29.0 7.3 80 123-212 274-354 (497)
291 PRK00461 rpmC 50S ribosomal pr 29.3 2.9E+02 0.0063 21.9 7.4 59 5-84 2-60 (87)
292 COG0419 SbcC ATPase involved i 29.0 8.3E+02 0.018 27.1 20.8 27 129-155 390-416 (908)
293 PRK10803 tol-pal system protei 28.9 4.1E+02 0.0089 25.0 9.1 46 54-99 58-103 (263)
294 PF05377 FlaC_arch: Flagella a 28.8 2.3E+02 0.0051 20.7 5.9 41 148-188 13-53 (55)
295 TIGR02449 conserved hypothetic 28.7 2.6E+02 0.0056 21.1 8.4 57 125-181 4-60 (65)
296 cd09238 V_Alix_like_1 Protein- 28.6 5.6E+02 0.012 25.0 18.7 29 38-67 204-232 (339)
297 PF06160 EzrA: Septation ring 28.6 7.1E+02 0.015 26.1 24.9 78 148-229 399-476 (560)
298 PF05529 Bap31: B-cell recepto 28.5 3.5E+02 0.0076 23.9 8.2 37 143-179 155-191 (192)
299 PF14197 Cep57_CLD_2: Centroso 28.2 2.6E+02 0.0057 21.1 7.8 38 121-158 26-63 (69)
300 PF09888 DUF2115: Uncharacteri 28.1 32 0.00068 30.4 1.3 12 289-300 117-128 (163)
301 PF04380 BMFP: Membrane fusoge 28.0 2.8E+02 0.0061 21.3 8.6 68 24-92 6-78 (79)
302 PLN02320 seryl-tRNA synthetase 28.0 2.8E+02 0.006 29.0 8.3 52 134-186 72-123 (502)
303 PF07820 TraC: TraC-like prote 27.9 78 0.0017 25.5 3.4 21 194-214 13-34 (92)
304 PLN03079 Uncharacterized prote 27.9 1.4E+02 0.0031 24.0 4.8 40 210-253 34-76 (91)
305 PF04859 DUF641: Plant protein 27.8 3.9E+02 0.0084 22.9 13.5 60 67-130 8-67 (131)
306 COG1722 XseB Exonuclease VII s 27.8 3E+02 0.0064 21.5 6.7 46 204-249 17-62 (81)
307 PF05103 DivIVA: DivIVA protei 27.7 61 0.0013 26.5 2.9 43 22-72 19-61 (131)
308 KOG1937|consensus 27.4 7.2E+02 0.016 25.8 20.5 70 37-106 266-342 (521)
309 PF00427 PBS_linker_poly: Phyc 27.4 1.8E+02 0.004 24.8 5.8 23 206-228 33-55 (131)
310 KOG0288|consensus 27.3 6.9E+02 0.015 25.6 14.1 43 45-91 12-54 (459)
311 PRK10929 putative mechanosensi 27.0 1E+03 0.022 27.5 19.3 54 126-179 256-309 (1109)
312 PF10164 DUF2367: Uncharacteri 26.9 72 0.0016 26.0 3.0 11 286-296 14-24 (98)
313 PF12718 Tropomyosin_1: Tropom 26.9 4E+02 0.0087 22.8 16.8 30 38-67 23-52 (143)
314 PF03153 TFIIA: Transcription 26.8 96 0.0021 30.4 4.6 37 201-247 6-42 (375)
315 PF07795 DUF1635: Protein of u 26.8 4.8E+02 0.01 24.2 8.8 58 126-183 3-60 (214)
316 KOG1676|consensus 26.8 1.4E+02 0.0031 31.6 5.9 33 219-252 363-395 (600)
317 TIGR00859 ENaC sodium channel 26.6 2.2E+02 0.0047 30.2 7.4 6 285-290 573-578 (595)
318 PF14775 NYD-SP28_assoc: Sperm 26.4 2.1E+02 0.0046 21.0 5.3 27 40-66 30-56 (60)
319 KOG3571|consensus 26.4 70 0.0015 33.4 3.5 23 285-307 504-528 (626)
320 PF10241 KxDL: Uncharacterized 26.3 3.2E+02 0.0069 21.4 9.6 52 133-184 27-78 (88)
321 PRK01022 hypothetical protein; 26.0 37 0.00079 30.2 1.3 12 289-300 119-130 (167)
322 PRK10947 global DNA-binding tr 26.0 3.4E+02 0.0073 23.3 7.2 17 18-34 6-22 (135)
323 PF15450 DUF4631: Domain of un 26.0 7.9E+02 0.017 25.9 16.7 54 37-90 21-74 (531)
324 PHA02669 hypothetical protein; 25.6 1.4E+02 0.0031 26.6 4.9 32 257-290 125-156 (210)
325 TIGR00996 Mtu_fam_mce virulenc 25.5 5.5E+02 0.012 23.9 15.1 83 87-175 132-214 (291)
326 COG4942 Membrane-bound metallo 25.3 7.5E+02 0.016 25.3 30.5 7 285-291 298-304 (420)
327 PF03131 bZIP_Maf: bZIP Maf tr 25.2 3.1 6.8E-05 33.0 -5.1 30 6-45 4-33 (92)
328 KOG0933|consensus 25.2 1.1E+03 0.024 27.2 27.6 36 146-181 840-875 (1174)
329 cd07592 BAR_Endophilin_A The B 25.0 5.5E+02 0.012 23.7 21.4 142 104-249 67-217 (223)
330 PHA02682 ORF080 virion core pr 25.0 2.1E+02 0.0046 26.4 6.0 75 115-197 201-276 (280)
331 KOG3671|consensus 24.7 2.3E+02 0.0051 29.6 6.9 16 38-53 37-52 (569)
332 PRK14475 F0F1 ATP synthase sub 24.7 4.6E+02 0.01 22.7 14.1 32 66-97 39-70 (167)
333 PF07195 FliD_C: Flagellar hoo 24.5 3.9E+02 0.0084 24.5 8.0 14 19-32 145-158 (239)
334 cd05026 S-100Z S-100Z: S-100Z 24.5 1.4E+02 0.0031 23.2 4.4 51 186-236 29-88 (93)
335 PF07412 Geminin: Geminin; In 24.5 2.2E+02 0.0048 26.1 6.0 55 126-184 116-170 (200)
336 cd05025 S-100A1 S-100A1: S-100 24.4 3.2E+02 0.007 20.8 8.7 51 186-236 28-87 (92)
337 KOG2220|consensus 24.4 9.5E+02 0.021 26.2 20.4 57 189-248 638-698 (714)
338 PF05622 HOOK: HOOK protein; 24.2 25 0.00055 37.8 0.0 43 13-56 178-220 (713)
339 KOG1365|consensus 24.1 6.4E+02 0.014 25.8 9.5 16 216-231 321-336 (508)
340 TIGR01843 type_I_hlyD type I s 24.0 6.6E+02 0.014 24.3 18.8 21 66-86 146-166 (423)
341 KOG0804|consensus 23.9 8.3E+02 0.018 25.4 15.4 121 17-162 328-448 (493)
342 COG0172 SerS Seryl-tRNA synthe 23.8 7.4E+02 0.016 25.4 10.3 32 152-183 71-102 (429)
343 PF07989 Microtub_assoc: Micro 23.7 2E+02 0.0043 22.1 4.9 37 50-86 36-72 (75)
344 PRK00409 recombination and DNA 23.7 1E+03 0.022 26.2 12.3 63 152-215 533-595 (782)
345 PRK09343 prefoldin subunit bet 23.7 4.2E+02 0.0092 21.9 14.5 61 126-188 57-117 (121)
346 PRK14070 exodeoxyribonuclease 23.5 3.3E+02 0.0072 20.6 6.0 37 206-242 4-40 (69)
347 COG5244 NIP100 Dynactin comple 23.4 8.8E+02 0.019 25.5 12.4 127 52-184 110-250 (669)
348 PF15619 Lebercilin: Ciliary p 23.3 5.6E+02 0.012 23.2 18.2 19 38-56 21-39 (194)
349 KOG3161|consensus 23.3 1.8E+02 0.0038 31.5 5.8 21 188-208 315-335 (861)
350 PRK15422 septal ring assembly 23.1 3.7E+02 0.0081 21.1 10.3 72 29-101 5-76 (79)
351 PF05701 WEMBL: Weak chloropla 23.0 8.6E+02 0.019 25.2 21.7 17 187-203 408-424 (522)
352 PF09371 Tex_N: Tex-like prote 23.0 5.2E+02 0.011 23.3 8.3 37 95-138 33-69 (193)
353 PLN02939 transferase, transfer 23.0 1.2E+03 0.025 26.7 20.8 37 166-203 327-364 (977)
354 PF02183 HALZ: Homeobox associ 22.9 2.6E+02 0.0056 19.3 4.9 33 41-73 10-42 (45)
355 PF05483 SCP-1: Synaptonemal c 22.9 1E+03 0.022 26.1 25.6 25 53-77 394-418 (786)
356 PRK14064 exodeoxyribonuclease 22.8 3.6E+02 0.0077 20.7 7.0 41 204-244 13-53 (75)
357 PF05600 DUF773: Protein of un 22.6 8.9E+02 0.019 25.2 15.0 20 15-34 342-361 (507)
358 COG2960 Uncharacterized protei 22.6 4.4E+02 0.0095 21.7 8.0 76 21-96 11-91 (103)
359 PRK14950 DNA polymerase III su 22.6 9.1E+02 0.02 25.4 15.3 28 177-205 313-340 (585)
360 PF00831 Ribosomal_L29: Riboso 22.5 3E+02 0.0065 19.8 6.4 55 6-81 2-56 (58)
361 PRK14154 heat shock protein Gr 22.5 5.2E+02 0.011 23.8 8.1 97 121-229 52-149 (208)
362 PLN02678 seryl-tRNA synthetase 22.4 5.1E+02 0.011 26.6 9.0 32 155-186 32-63 (448)
363 KOG1962|consensus 22.4 3.8E+02 0.0082 24.9 7.3 38 60-97 154-191 (216)
364 PRK14959 DNA polymerase III su 22.4 9.9E+02 0.021 25.7 16.5 23 175-197 312-334 (624)
365 COG3352 FlaC Putative archaeal 22.4 5.1E+02 0.011 22.9 7.6 42 62-103 63-104 (157)
366 PRK10698 phage shock protein P 22.4 6.1E+02 0.013 23.3 23.1 16 18-33 20-36 (222)
367 PHA03369 capsid maturational p 22.2 1E+03 0.022 25.7 12.9 13 216-228 320-332 (663)
368 KOG2295|consensus 21.7 1E+03 0.022 25.5 11.7 40 191-232 463-502 (648)
369 KOG2264|consensus 21.7 8.1E+02 0.018 26.4 10.1 41 150-190 115-155 (907)
370 TIGR02231 conserved hypothetic 21.5 8.9E+02 0.019 24.9 12.0 33 62-94 69-101 (525)
371 KOG2010|consensus 21.4 2.7E+02 0.0058 27.7 6.2 25 38-62 121-147 (405)
372 CHL00154 rpl29 ribosomal prote 21.2 3.6E+02 0.0079 20.2 7.7 38 45-82 25-62 (67)
373 KOG2115|consensus 21.2 1.2E+03 0.026 26.3 12.8 69 20-95 209-278 (951)
374 PF10018 Med4: Vitamin-D-recep 21.2 4.7E+02 0.01 23.2 7.6 18 129-146 82-99 (188)
375 KOG0046|consensus 21.0 1.7E+02 0.0037 30.9 5.1 68 163-234 16-90 (627)
376 cd07595 BAR_RhoGAP_Rich-like T 21.0 6.9E+02 0.015 23.3 20.1 60 190-249 162-225 (244)
377 PF14179 YppG: YppG-like prote 20.9 1.2E+02 0.0026 25.3 3.4 22 287-308 36-57 (112)
378 PF01496 V_ATPase_I: V-type AT 20.9 4.7E+02 0.01 28.4 8.8 92 6-99 2-102 (759)
379 PRK06231 F0F1 ATP synthase sub 20.8 6.3E+02 0.014 22.8 13.9 30 66-95 77-106 (205)
380 PF10167 NEP: Uncharacterised 20.7 2.1E+02 0.0045 24.0 4.8 50 64-113 44-94 (118)
381 TIGR00634 recN DNA repair prot 20.6 9.7E+02 0.021 24.9 21.3 204 3-212 148-368 (563)
382 PF09325 Vps5: Vps5 C terminal 20.6 6.1E+02 0.013 22.6 22.1 19 219-237 207-225 (236)
383 KOG0993|consensus 20.5 9.5E+02 0.021 24.8 21.8 22 232-253 507-528 (542)
384 smart00340 HALZ homeobox assoc 20.4 1.9E+02 0.0042 20.0 3.7 28 44-71 6-33 (44)
385 cd07627 BAR_Vps5p The Bin/Amph 20.4 6.4E+02 0.014 22.7 19.4 22 161-182 113-134 (216)
386 PF13851 GAS: Growth-arrest sp 20.2 6.5E+02 0.014 22.7 18.9 156 81-248 1-159 (201)
387 PRK14153 heat shock protein Gr 20.2 6.6E+02 0.014 22.8 8.7 37 119-155 31-67 (194)
388 KOG1772|consensus 20.1 5.1E+02 0.011 21.5 11.3 92 106-197 8-102 (108)
389 PRK08032 fliD flagellar cappin 20.1 3.6E+02 0.0078 27.5 7.4 16 16-31 362-378 (462)
No 1
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=99.98 E-value=4.1e-32 Score=234.14 Aligned_cols=146 Identities=43% Similarity=0.585 Sum_probs=129.6
Q ss_pred hcCCHHHHHHHHHHHH---HHHHhhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 99 NNVSTDTVLALLQTAA---SEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESK 175 (320)
Q Consensus 99 ~~~Sp~~Ll~lLq~a~---~~~eeesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k 175 (320)
..+|.+.|..+|++.. .++...++++.+...+++++++|++||+.||+++|+|+++|+++..+|.+++.|+.+|+.|
T Consensus 2 ~~lS~~eL~~Ll~d~~~l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k 81 (150)
T PF07200_consen 2 QDLSTEELQELLSDEEKLDAFVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEK 81 (150)
T ss_dssp GS-TTHHHHHHHHH-HHHHHHGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHcCHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999996 7788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCHHHHHHHhhHHHHHHHHhHHHHHHH
Q psy1409 176 VELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRIKADKM 244 (320)
Q Consensus 176 ~~kl~~~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~FL~G~idv~~Fl~~f~~~R~~~h~Rk~K~e~l 244 (320)
+++++.++.+|||++|+++|++++.++|++||.||++|++|++||++||++|+++|++||.|++|.|||
T Consensus 82 ~~~~~~l~~~~s~~~l~~~L~~~~~e~eeeSe~lae~fl~g~~d~~~Fl~~f~~~R~~yH~R~~K~EkL 150 (150)
T PF07200_consen 82 EQQQDELSSNYSPDALLARLQAAASEAEEESEELAEEFLDGEIDVDDFLKQFKEKRKLYHLRRAKEEKL 150 (150)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC-S-SSSHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999997
No 2
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=99.94 E-value=2.5e-26 Score=198.12 Aligned_cols=150 Identities=38% Similarity=0.419 Sum_probs=133.1
Q ss_pred hccCCHHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 8 LEHLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSV 87 (320)
Q Consensus 8 L~~lS~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~ 87 (320)
|.+||.+||++|++|++++++||.++| +|+.+...+++++++|++||+.||+++|+|+++|++|.+++.+++.|+.+|
T Consensus 1 L~~lS~~eL~~Ll~d~~~l~~~v~~l~--~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~ 78 (150)
T PF07200_consen 1 LQDLSTEELQELLSDEEKLDAFVKSLP--QVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEY 78 (150)
T ss_dssp GGS-TTHHHHHHHHH-HHHHHHGGGGS----HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHcCHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999998 699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q psy1409 88 ESKVELIKSHKNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQ 167 (320)
Q Consensus 88 ~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~ 167 (320)
..+.++++.++..|||++|+++|++++..+|++|+. ||+.+++++.++++|. ..|.+.|+
T Consensus 79 ~~k~~~~~~l~~~~s~~~l~~~L~~~~~e~eeeSe~----------------lae~fl~g~~d~~~Fl----~~f~~~R~ 138 (150)
T PF07200_consen 79 QEKEQQQDELSSNYSPDALLARLQAAASEAEEESEE----------------LAEEFLDGEIDVDDFL----KQFKEKRK 138 (150)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH----------------HC-S-SSSHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH----------------HHHHHhCCCCCHHHHH----HHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999999887 88888999
Q ss_pred HHHHHHHHHHHH
Q psy1409 168 LSKSVESKVELI 179 (320)
Q Consensus 168 L~~~~~~k~~kl 179 (320)
++|.++.|..++
T Consensus 139 ~yH~R~~K~EkL 150 (150)
T PF07200_consen 139 LYHLRRAKEEKL 150 (150)
T ss_dssp HHHHHH---HHH
T ss_pred HHHHHHhhhccC
Confidence 999999887764
No 3
>KOG3270|consensus
Probab=99.43 E-value=5e-14 Score=129.50 Aligned_cols=158 Identities=30% Similarity=0.366 Sum_probs=132.7
Q ss_pred ccHHHHhccC-CHHHHHhhhc--CHHHHHHHHHhccHHHHHHHH------HHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy1409 2 ENLESLLEHL-DISELKELVN--DEETFNNFTKEATATLTTESN------EQKEMLIASNKSLAEYNLSQEEALLEKKSQ 72 (320)
Q Consensus 2 ~~~~~~L~~l-S~eEL~~Ll~--d~d~l~~f~~~l~~~~vk~~~------~~re~ll~~N~~LAe~NL~~ep~L~elr~~ 72 (320)
++|...|++. |++||++++. |.|....|+..++ ||+.++ ..+|+|..+.+.||+.||.++|.|.++|+.
T Consensus 67 ~~~~~~L~~~~sv~El~~l~a~r~~d~~~Q~i~lld--Qv~~l~~l~~~~~~~e~L~~~~e~l~r~nl~~~p~l~el~~~ 144 (244)
T KOG3270|consen 67 DGLLALLKDKKSVDELNELLAERDKDAEEQFIELLD--QVQKLNGLEVARKIQEKLVKSVEKLARENLEKEPALVELRNQ 144 (244)
T ss_pred hhHHHHhhhhhhhHHHHHhhhhhchhhhHHHHHHHH--HHHHhhccchhHHHHHHHHHHHHHhcccchhhccchHHHHhh
Confidence 4678888888 9999999999 9999999999986 899888 789999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHH
Q psy1409 73 LLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALL 152 (320)
Q Consensus 73 l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Le 152 (320)
+.+.++.+.+.+ +. +.
T Consensus 145 ~~~~~t~~~~~~--------------------------------~s----------------------------~~---- 160 (244)
T KOG3270|consen 145 ASDIFTQLENGE--------------------------------IS----------------------------KE---- 160 (244)
T ss_pred hhhhhhhhhccc--------------------------------cc----------------------------cc----
Confidence 888777665321 00 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCHHHHHHHhhHHHH
Q psy1409 153 EKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRI 232 (320)
Q Consensus 153 elr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~FL~G~idv~~Fl~~f~~~R~ 232 (320)
..+.++....+..|++..++++|++|+.+++++|+...+.|+.|.++|+.|+..|...|+
T Consensus 161 --------------------~~l~~~~~~~~~~~~~~~~l~rL~~aa~~~~~~s~~~~~~fl~~~~~~~~f~ss~~~~~~ 220 (244)
T KOG3270|consen 161 --------------------DELKKFKDKKSKPYSPKIILARLKAAAMEADEESDRQGEQFLPGPPAVGGFPSSGFMPRT 220 (244)
T ss_pred --------------------hHHHhhhcccccccchHHHHHHHHHHHHhhcccccccccCCCCCCcccccccccccccCc
Confidence 111233456778999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHH
Q psy1409 233 LMHLRRIKADKMA 245 (320)
Q Consensus 233 ~~h~Rk~K~e~l~ 245 (320)
.||.|+.|.+++.
T Consensus 221 ~~~~r~~~~~~l~ 233 (244)
T KOG3270|consen 221 GSHQRGPKEERLP 233 (244)
T ss_pred ccCCCCcccccCC
Confidence 9999988876653
No 4
>KOG3270|consensus
Probab=98.61 E-value=3.2e-07 Score=84.86 Aligned_cols=166 Identities=19% Similarity=0.192 Sum_probs=119.1
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhH
Q psy1409 59 NLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNK 138 (320)
Q Consensus 59 NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~ 138 (320)
|....|.+. .+....++.....+...+.-+.-..+.-+..-+++.++.+|++. +.++|..+.
T Consensus 24 ~p~y~ps~~--~s~~~~q~q~~~~~~~~~~lk~i~~d~~~~~~~~~~~~~~L~~~-~sv~El~~l--------------- 85 (244)
T KOG3270|consen 24 DPWYSPSLA--TSRSLAQPQATSSGQISALLKSIIVDDQQSPGEADGLLALLKDK-KSVDELNEL--------------- 85 (244)
T ss_pred CCCcChhhh--hchhhcccccccchhhhhhhhccccccccCccchhhHHHHhhhh-hhhHHHHHh---------------
Confidence 666666432 33334444444444444444455555566777899999999999 888888888
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCC
Q psy1409 139 SLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTI 218 (320)
Q Consensus 139 ~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~FL~G~i 218 (320)
+|+++.+.++.+.++++++ ..++.+.+.+ ....++.+...+-+- .=..+.-++-++.+.+..+-..|..|++
T Consensus 86 -~a~r~~d~~~Q~i~lldQv----~~l~~l~~~~-~~~e~L~~~~e~l~r--~nl~~~p~l~el~~~~~~~~t~~~~~~~ 157 (244)
T KOG3270|consen 86 -LAERDKDAEEQFIELLDQV----QKLNGLEVAR-KIQEKLVKSVEKLAR--ENLEKEPALVELRNQASDIFTQLENGEI 157 (244)
T ss_pred -hhhhchhhhHHHHHHHHHH----HHhhccchhH-HHHHHHHHHHHHhcc--cchhhccchHHHHhhhhhhhhhhhcccc
Confidence 9999999999999999555 4467666666 444444333222221 1233455666777777888889999999
Q ss_pred CHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc
Q psy1409 219 DVDKFLETFTPKRILMHLRRIKADKMAEMLTK 250 (320)
Q Consensus 219 dv~~Fl~~f~~~R~~~h~Rk~K~e~l~~~~~~ 250 (320)
+..+|+.+|+.+....|.|+++.++++....+
T Consensus 158 s~~~~l~~~~~~~~~~~~~~~~l~rL~~aa~~ 189 (244)
T KOG3270|consen 158 SKEDELKKFKDKKSKPYSPKIILARLKAAAME 189 (244)
T ss_pred ccchHHHhhhcccccccchHHHHHHHHHHHHh
Confidence 99999999999999999999999999988876
No 5
>KOG1924|consensus
Probab=97.70 E-value=0.01 Score=63.07 Aligned_cols=15 Identities=27% Similarity=0.532 Sum_probs=6.9
Q ss_pred HHHHHHHHhHHHHHH
Q psy1409 199 ASEIEEESEKVPEEF 213 (320)
Q Consensus 199 ~~eaEeeSE~lae~F 213 (320)
+.+.++++.++..+|
T Consensus 469 ~eeseqkA~e~~kk~ 483 (1102)
T KOG1924|consen 469 AEESEQKAAELEKKF 483 (1102)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444544444
No 6
>KOG1924|consensus
Probab=96.67 E-value=0.21 Score=53.53 Aligned_cols=73 Identities=16% Similarity=0.128 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhh
Q psy1409 62 QEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASN 137 (320)
Q Consensus 62 ~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N 137 (320)
++..|+++...|.+..-|.-.+.+-|+-+....++ .-+-.-++..||.-.-.-++-.-.......+|.++.+.
T Consensus 363 ~e~Dl~el~~rledir~emDd~~~~f~lL~n~vkd---T~aE~yfLSILQhlllirnDy~~rpqYykLIEecISqI 435 (1102)
T KOG1924|consen 363 KEDDLEELSGRLEDIRAEMDDANEVFELLANTVKD---TGAEPYFLSILQHLLLIRNDYYIRPQYYKLIEECISQI 435 (1102)
T ss_pred hhhhHHHHHhHHHhhhhhhccHHHHHHHHHHhhhh---ccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 44555555555555555555554444444333322 11222344455544433333333344455555555443
No 7
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.33 E-value=0.63 Score=48.37 Aligned_cols=61 Identities=21% Similarity=0.212 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1409 37 LTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSH 97 (320)
Q Consensus 37 ~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~ 97 (320)
++..+..++++|+..|..|-+.+-.++-++..++.+|....++...|...+.++....+.+
T Consensus 144 qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l 204 (546)
T PF07888_consen 144 QLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEEL 204 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777777777777777777777777777777766666666666666555554443
No 8
>KOG0774|consensus
Probab=96.09 E-value=1 Score=42.67 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=34.3
Q ss_pred HHHHHhHHHHHHhcCCCCHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc
Q psy1409 202 IEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRIKADKMAEMLTK 250 (320)
Q Consensus 202 aEeeSE~lae~FL~G~idv~~Fl~~f~~~R~~~h~Rk~K~e~l~~~~~~ 250 (320)
+|++-++||.+ .+|.|.+.-.-|..+|..|-.--.|..-...+-..
T Consensus 217 See~K~eLAkq---CnItvsQvsnwfgnkrIrykK~~~k~~ee~~l~~~ 262 (334)
T KOG0774|consen 217 SEEAKEELAKQ---CNITVSQVSNWFGNKRIRYKKNMGKNQEEANLYAA 262 (334)
T ss_pred cHHHHHHHHHH---cCceehhhccccccceeehhhhhhhhhhhhhhHhh
Confidence 56677777776 68899988888999988887766676666665544
No 9
>KOG2129|consensus
Probab=95.66 E-value=2.8 Score=42.26 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 44 QKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKS 86 (320)
Q Consensus 44 ~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~ 86 (320)
-+..++..++.|--..|.++..|+.||.+..+....+.+=++.
T Consensus 159 ~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEa 201 (552)
T KOG2129|consen 159 FVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEA 201 (552)
T ss_pred HHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHH
Confidence 4667889999998889999999999999888777666655443
No 10
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.61 E-value=4.3 Score=38.65 Aligned_cols=141 Identities=13% Similarity=0.200 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhcCCHHHHHHHHHHH
Q psy1409 38 TTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVES----KVELIKSHKNNVSTDTVLALLQTA 113 (320)
Q Consensus 38 vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~----~~~~~~~~~~~~Sp~~Ll~lLq~a 113 (320)
+++++.+.+.|.....++-..=-+.+.++.+.+.++...-.++..++++..+ +.+|.+.++.+=+-..-++.|=.+
T Consensus 47 ~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~S 126 (265)
T COG3883 47 KKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVILNS 126 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHcc
Confidence 5667777777777777776655556666666666666666666666555433 444555555544444444444334
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 114 ASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSH 182 (320)
Q Consensus 114 ~~~~eeesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~ 182 (320)
-++.| +..--+..-.++..+..|.+..-..+-.|++....+...+.++..+...++.....++.-
T Consensus 127 kSfsD----~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~q 191 (265)
T COG3883 127 KSFSD----LISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQ 191 (265)
T ss_pred CcHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443 333336677788889999999999999999999999999999999999999988888763
No 11
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=93.99 E-value=5.9 Score=37.77 Aligned_cols=135 Identities=22% Similarity=0.240 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHH
Q psy1409 71 SQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEA 150 (320)
Q Consensus 71 ~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~ 150 (320)
.++....-.++.|...+.+-+++.-++.. .+++-|..+.... .+.+..+.++++..+.+ +|-..+..
T Consensus 52 ~ql~ll~~~~k~L~aE~~qwqk~~peii~-~n~~VL~~lgkee---------lqkl~~eLe~vLs~~q~---KnekLke~ 118 (268)
T PF11802_consen 52 AQLSLLMMRVKCLTAELEQWQKRTPEIIP-LNPEVLLTLGKEE---------LQKLISELEMVLSTVQS---KNEKLKED 118 (268)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCcCC-CCHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 44444555556666666666666665544 3477777665554 34445556666655544 34444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCHHHHHHHhhH
Q psy1409 151 LLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTP 229 (320)
Q Consensus 151 Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~FL~G~idv~~Fl~~f~~ 229 (320)
++.-+ .-..+..++........+++......+|...+...|...+..+.+..+.+-.. +++||..+-.
T Consensus 119 LerEq----~wL~Eqqql~~sL~~r~~elk~~~~~~se~rv~~el~~K~~~~k~~~e~Ll~~-------LgeFLeeHfP 186 (268)
T PF11802_consen 119 LEREQ----QWLDEQQQLLESLNKRHEELKNQVETFSESRVFQELKTKIEKIKEYKEKLLSF-------LGEFLEEHFP 186 (268)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhcCC
Confidence 44433 44566677777777778888888889999999999999999999888887654 4666666543
No 12
>KOG2391|consensus
Probab=93.84 E-value=3.7 Score=40.31 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCCHHHHHHHhhHH-HHHHHHhHH
Q psy1409 208 KVPEEFLNGTIDVDKFLETFTPK-RILMHLRRI 239 (320)
Q Consensus 208 ~lae~FL~G~idv~~Fl~~f~~~-R~~~h~Rk~ 239 (320)
.|-+.|-+|.|++++||+..+-. |..++.|.+
T Consensus 321 ~L~~~~r~G~i~l~~yLr~VR~lsReQF~~rat 353 (365)
T KOG2391|consen 321 SLGKSLRDGVIDLDQYLRHVRLLSREQFILRAT 353 (365)
T ss_pred HHHHHHhcCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999988764 577777665
No 13
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.83 E-value=16 Score=42.15 Aligned_cols=167 Identities=16% Similarity=0.231 Sum_probs=74.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHH
Q psy1409 62 QEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLA 141 (320)
Q Consensus 62 ~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~~LA 141 (320)
.+++|+++..++.....++..+......+...+..+...+ +.+....+.. ......++..+......+..-|..+=
T Consensus 886 le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~ 961 (1311)
T TIGR00606 886 FEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEK--EELISSKETS--NKKAQDKVNDIKEKVKNIHGYMKDIE 961 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH--HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544444444443332221 1111111111 11122223344444444444444444
Q ss_pred HHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH--------HHHHHH--HHHHHHHHHHHHhHHH
Q psy1409 142 EYNLSQEEA-LLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVST--------DTVLAL--LQTAASEIEEESEKVP 210 (320)
Q Consensus 142 e~NL~~ep~-Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp--------~~l~~~--Lq~a~~eaEeeSE~la 210 (320)
...-.+.+. |..+..++...-..+..+......+..++..+....+- ..-+.. ++..+.+.+.+.+.|.
T Consensus 962 ~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~ 1041 (1311)
T TIGR00606 962 NKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHL 1041 (1311)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433333333 44444444333333333333333333333332222211 111122 3566666666666666
Q ss_pred HHHhcCCCCHHHHHHHhhHHHHHH
Q psy1409 211 EEFLNGTIDVDKFLETFTPKRILM 234 (320)
Q Consensus 211 e~FL~G~idv~~Fl~~f~~~R~~~ 234 (320)
.+. |+++...|-..+...+..+
T Consensus 1042 ~~~--~~~~~~~~~~e~~~l~~~~ 1063 (1311)
T TIGR00606 1042 KEM--GQMQVLQMKQEHQKLEENI 1063 (1311)
T ss_pred HHH--hhccHHHHHHHHHHHHHHH
Confidence 664 6778888888888777433
No 14
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.19 E-value=12 Score=39.04 Aligned_cols=62 Identities=18% Similarity=0.123 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1409 38 TTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKN 99 (320)
Q Consensus 38 vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~ 99 (320)
..-++...+.+..++..|=+.|..++.....++.++...-.++...++.++.+..+.+++..
T Consensus 138 a~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~ 199 (546)
T PF07888_consen 138 AQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTE 199 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345566666666666666666666666666666666666666666666666666665544
No 15
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.33 E-value=8.6 Score=39.51 Aligned_cols=144 Identities=16% Similarity=0.097 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Q psy1409 37 LTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASE 116 (320)
Q Consensus 37 ~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~ 116 (320)
+++.++.+.+.+..+|+.|-+. +.---+|.+.+..|.+++.+++.=--.|+.-.+..+..++.|. .++..|+.+.-.
T Consensus 265 ~~~~i~~~i~~lk~~n~~l~e~-i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~--g~l~kl~~eie~ 341 (622)
T COG5185 265 FVHIINTDIANLKTQNDNLYEK-IQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWP--GKLEKLKSEIEL 341 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHH
Confidence 4667777788888888877653 3444567777777777777776666666665555555555442 233344443211
Q ss_pred HHhhhhhhhhHHHHHHHH----------------HhhHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 117 IEEESETTESNEQKEMLI----------------ASNKSLAEYNLS-QEEALLEKKSQLLDLNEQLTQLSKSVESKVELI 179 (320)
Q Consensus 117 ~eeesE~k~l~~~~e~ll----------------~~N~~LAe~NL~-~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl 179 (320)
.+++.+.|+..++.|- .+-+.--.++|. ..+..+.++..+...-.+++....+.+.+..++
T Consensus 342 --kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~ 419 (622)
T COG5185 342 --KEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQY 419 (622)
T ss_pred --HHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 1222333333333322 222222234454 377788888888877777777777777777777
Q ss_pred HHHhhc
Q psy1409 180 KSHKNN 185 (320)
Q Consensus 180 ~~~~~~ 185 (320)
+.+...
T Consensus 420 ~sl~~~ 425 (622)
T COG5185 420 DSLIQN 425 (622)
T ss_pred HHHHHH
Confidence 775443
No 16
>PRK11637 AmiB activator; Provisional
Probab=92.25 E-value=14 Score=37.16 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=15.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 62 QEEALLEKKSQLLDLNEQLTQLSKSVESKV 91 (320)
Q Consensus 62 ~ep~L~elr~~l~~~~~el~~l~~~~~~~~ 91 (320)
.+-.|..+..++...-.++..++...+...
T Consensus 94 ~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 94 TQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555444433
No 17
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=91.69 E-value=25 Score=38.95 Aligned_cols=7 Identities=29% Similarity=0.416 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy1409 196 QTAASEI 202 (320)
Q Consensus 196 q~a~~ea 202 (320)
+....+.
T Consensus 439 ~~~~~~~ 445 (1179)
T TIGR02168 439 QAELEEL 445 (1179)
T ss_pred HHHHHHH
Confidence 3333333
No 18
>KOG1923|consensus
Probab=91.17 E-value=0.66 Score=49.67 Aligned_cols=18 Identities=17% Similarity=0.034 Sum_probs=10.8
Q ss_pred cCCCCCCCCCCCCCCCCC
Q psy1409 251 RNSFGSPTHNGVGGHNGG 268 (320)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~ 268 (320)
+.+++.|+|.+|..|+..
T Consensus 276 ~~S~s~ppppap~p~~~~ 293 (830)
T KOG1923|consen 276 PGSGSGPPPPAPLPHTAQ 293 (830)
T ss_pred CCCCCCCCCCCCCCCccc
Confidence 445556666666666554
No 19
>KOG2129|consensus
Probab=90.91 E-value=14 Score=37.51 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=25.6
Q ss_pred HHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q psy1409 130 KEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLT 166 (320)
Q Consensus 130 ~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~ 166 (320)
+..+|...+.|-...+.++..|+.+|.+.++....+.
T Consensus 160 vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlE 196 (552)
T KOG2129|consen 160 VNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLE 196 (552)
T ss_pred HHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHH
Confidence 3457777777777777888888888777665544443
No 20
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=90.81 E-value=29 Score=38.03 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=23.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1409 62 QEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSH 97 (320)
Q Consensus 62 ~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~ 97 (320)
+..+++.++.+|..+-.|+..+..+++.+.....+.
T Consensus 285 mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~ 320 (775)
T PF10174_consen 285 MKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDM 320 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 444577777777777767777766666666555544
No 21
>KOG4403|consensus
Probab=90.79 E-value=21 Score=36.42 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=74.2
Q ss_pred cCCHHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhcc------HHHHHHHHHHHHH--HHHHHH
Q psy1409 10 HLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQ------EEALLEKKSQLLD--LNEQLT 81 (320)
Q Consensus 10 ~lS~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~------ep~L~elr~~l~~--~~~el~ 81 (320)
-.+.+-+++|..|=+-|...=.+ +.+++...+....++|..|-.-+.+ -|+|.++|.-+.. ...|+.
T Consensus 238 k~akehv~km~kdle~Lq~aEqs-----l~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE 312 (575)
T KOG4403|consen 238 KKAKEHVNKMMKDLEGLQRAEQS-----LEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELE 312 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHH
Confidence 34667788888888877766444 4667777888888888888444443 3556677765433 346899
Q ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q psy1409 82 QLSKSVESKVELIKSHKNNVSTDTVLALLQTA 113 (320)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a 113 (320)
++....++-.++++.-+.-.-|.+|..+||--
T Consensus 313 ~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T 344 (575)
T KOG4403|consen 313 QLRVALEKAEKELEANSSWSAPLALQKWLQLT 344 (575)
T ss_pred HHHHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 99999999999999999888899999999865
No 22
>KOG0996|consensus
Probab=90.64 E-value=35 Score=38.78 Aligned_cols=58 Identities=12% Similarity=0.152 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhcCCCCHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc
Q psy1409 193 ALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRIKADKMAEMLTK 250 (320)
Q Consensus 193 ~~Lq~a~~eaEeeSE~lae~FL~G~idv~~Fl~~f~~~R~~~h~Rk~K~e~l~~~~~~ 250 (320)
...++++....++-..+-..|-+++-+++.....-...+..+|.++.|.+=++..++.
T Consensus 538 ~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~ 595 (1293)
T KOG0996|consen 538 KEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSS 595 (1293)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555555555666666677788888888888888999988888876665
No 23
>PRK11637 AmiB activator; Provisional
Probab=90.55 E-value=20 Score=35.93 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 65 ALLEKKSQLLDLNEQLTQLSKSVESKV 91 (320)
Q Consensus 65 ~L~elr~~l~~~~~el~~l~~~~~~~~ 91 (320)
.|..+..++...-.++..+......+.
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 24
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.10 E-value=42 Score=38.79 Aligned_cols=68 Identities=12% Similarity=0.216 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q psy1409 44 QKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTA 113 (320)
Q Consensus 44 ~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a 113 (320)
..+.+..-+-..+..+=.....+-.++.++...-.++..+...+++....+..+-. +.+.+..++++.
T Consensus 724 ~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~--~~~~~esL~~~v 791 (1311)
T TIGR00606 724 RRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMP--EEESAKVCLTDV 791 (1311)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHH
Confidence 33333333333344433334556666666666666666666666666665554422 334444444444
No 25
>KOG0995|consensus
Probab=89.87 E-value=28 Score=36.52 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 147 QEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSH 182 (320)
Q Consensus 147 ~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~ 182 (320)
.+++++.+...+-+.-.+++.-.++.+.+..+++.+
T Consensus 351 i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l 386 (581)
T KOG0995|consen 351 IQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSL 386 (581)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544444444444444444444444443
No 26
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.67 E-value=21 Score=34.69 Aligned_cols=83 Identities=18% Similarity=0.211 Sum_probs=45.6
Q ss_pred HHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH----HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 14 SELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSL----AEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVES 89 (320)
Q Consensus 14 eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~L----Ae~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~ 89 (320)
+.+..|.+|...+.+....+.. .+..+...++.|..+...| ++-...-+..|..+|.+|.....++...+....+
T Consensus 156 ~~~~~L~~D~~~L~~~~~~l~~-~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~e 234 (325)
T PF08317_consen 156 ENLELLQEDYAKLDKQLEQLDE-LLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAE 234 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666665555555432 3444444444444444333 2244455666777777777666666666666666
Q ss_pred HHHHHHHh
Q psy1409 90 KVELIKSH 97 (320)
Q Consensus 90 ~~~~~~~~ 97 (320)
+..++.++
T Consensus 235 l~~el~~l 242 (325)
T PF08317_consen 235 LQEELEEL 242 (325)
T ss_pred HHHHHHHH
Confidence 66665544
No 27
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=89.44 E-value=44 Score=38.10 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1409 66 LLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNN 100 (320)
Q Consensus 66 L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~ 100 (320)
+.++-+++...+.++.++++.....+.+..+++..
T Consensus 104 ~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~ 138 (1109)
T PRK10929 104 TDALEQEILQVSSQLLEKSRQAQQEQDRAREISDS 138 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 46666667777777777777777666666554443
No 28
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=89.35 E-value=26 Score=35.31 Aligned_cols=138 Identities=17% Similarity=0.227 Sum_probs=69.1
Q ss_pred hcCCHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 99 NNVSTDTVLALLQTAASEIEEESET-TESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVE 177 (320)
Q Consensus 99 ~~~Sp~~Ll~lLq~a~~~~eeesE~-k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~ 177 (320)
+..+.++...+|++-..-+.|.++| ++++...+.+...-....+--.+....+......+...+..+...+.....-..
T Consensus 232 ~~~~~~e~~e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~yl~ 311 (412)
T PF04108_consen 232 EPMSEEERQEMLEVLENDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGERLPSYLA 311 (412)
T ss_pred CCCChHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788777778888777667777776 444444444332222212223344555555555555555555555553333333
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCHHHHHHHhhHHHHHHHHhHHHHHHHHHHHh
Q psy1409 178 LIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRIKADKMAEMLT 249 (320)
Q Consensus 178 kl~~~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~FL~G~idv~~Fl~~f~~~R~~~h~Rk~K~e~l~~~~~ 249 (320)
....+...|. ..+..+..-+.+.+ .+..- -+.|+..|...-.-.|.||.-.+++..+++
T Consensus 312 ~~~~~~~~~~--~~~~~i~~~~~~l~----~L~~~-------Y~~F~~aY~~LL~Ev~RRr~~~~k~~~i~~ 370 (412)
T PF04108_consen 312 AFHDFEERWE--EEKESIQAYIDELE----QLCEF-------YEGFLSAYDSLLLEVERRRAVRDKMKKIIR 370 (412)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333221 11112222222222 22221 356777777766666777766666665553
No 29
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=89.07 E-value=42 Score=37.35 Aligned_cols=14 Identities=29% Similarity=0.356 Sum_probs=5.5
Q ss_pred HHHhhhcCHHHHHH
Q psy1409 15 ELKELVNDEETFNN 28 (320)
Q Consensus 15 EL~~Ll~d~d~l~~ 28 (320)
++..|...-+.+..
T Consensus 675 ~l~~l~~~l~~l~~ 688 (1164)
T TIGR02169 675 ELQRLRERLEGLKR 688 (1164)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444433333333
No 30
>KOG2675|consensus
Probab=88.44 E-value=12 Score=38.17 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=15.8
Q ss_pred HHHHHHHhhHHHHHHHHhHHH
Q psy1409 220 VDKFLETFTPKRILMHLRRIK 240 (320)
Q Consensus 220 v~~Fl~~f~~~R~~~h~Rk~K 240 (320)
-..|++.|...-.+|--|-.|
T Consensus 156 P~p~vke~~daa~FY~NrvLk 176 (480)
T KOG2675|consen 156 PAPYVKEFKDAAQFYTNRVLK 176 (480)
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 457888888888888777655
No 31
>KOG2391|consensus
Probab=88.33 E-value=1.3 Score=43.33 Aligned_cols=14 Identities=7% Similarity=0.173 Sum_probs=6.8
Q ss_pred HHHHHHHHhc-cCCC
Q psy1409 241 ADKMAEMLTK-RNSF 254 (320)
Q Consensus 241 ~e~l~~~~~~-~~~~ 254 (320)
...+++++.. ++.|
T Consensus 125 v~Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 125 VGLIQELIAAFSEDP 139 (365)
T ss_pred HHHHHHHHHHhcCCC
Confidence 3445555554 4433
No 32
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=88.28 E-value=43 Score=36.52 Aligned_cols=92 Identities=21% Similarity=0.173 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhcCCHHHHHHHHHHHHHHHHhhh-----hhhhhHHHHHHHHHh
Q psy1409 68 EKKSQLLDLNEQLTQLSKSVESKVELIKS------HKNNVSTDTVLALLQTAASEIEEES-----ETTESNEQKEMLIAS 136 (320)
Q Consensus 68 elr~~l~~~~~el~~l~~~~~~~~~~~~~------~~~~~Sp~~Ll~lLq~a~~~~eees-----E~k~l~~~~e~ll~~ 136 (320)
-||++-+..+..|+-|..++.+..+-.+. -.+-+|+..|...||.-..+.-..- -..+|-...|....+
T Consensus 391 plrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~E 470 (861)
T PF15254_consen 391 PLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEE 470 (861)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Confidence 46777777777777777777665554432 1233466666677776653332221 123455556666677
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHH
Q psy1409 137 NKSLAEYNLSQEEALLEKKSQLL 159 (320)
Q Consensus 137 N~~LAe~NL~~ep~Leelr~ql~ 159 (320)
|..+++.+.+++..|-+.|.++.
T Consensus 471 nk~~~~~~~ekd~~l~~~kq~~d 493 (861)
T PF15254_consen 471 NKRLRKMFQEKDQELLENKQQFD 493 (861)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Confidence 88888888888888887776654
No 33
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=88.20 E-value=26 Score=33.92 Aligned_cols=12 Identities=8% Similarity=0.061 Sum_probs=5.1
Q ss_pred cCCHHHHHHHHH
Q psy1409 100 NVSTDTVLALLQ 111 (320)
Q Consensus 100 ~~Sp~~Ll~lLq 111 (320)
.-++..|...++
T Consensus 106 ~~~~~~ler~i~ 117 (294)
T COG1340 106 GRSIKSLEREIE 117 (294)
T ss_pred CCCHHHHHHHHH
Confidence 334444444333
No 34
>KOG1029|consensus
Probab=88.09 E-value=45 Score=36.53 Aligned_cols=21 Identities=10% Similarity=0.245 Sum_probs=12.0
Q ss_pred CHHHHHHHhhHHHHHHHHhHH
Q psy1409 219 DVDKFLETFTPKRILMHLRRI 239 (320)
Q Consensus 219 dv~~Fl~~f~~~R~~~h~Rk~ 239 (320)
+++.|-.+-.+.|..+...-+
T Consensus 564 eidi~n~qlkelk~~~~~q~l 584 (1118)
T KOG1029|consen 564 EIDIFNNQLKELKEDVNSQQL 584 (1118)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 466676666666654444333
No 35
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=87.90 E-value=30 Score=34.21 Aligned_cols=52 Identities=15% Similarity=0.357 Sum_probs=28.8
Q ss_pred HHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy1409 15 ELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKS 71 (320)
Q Consensus 15 EL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~ 71 (320)
-.+++.++++-+..+-.++ ++-+.+-+.|..+|..|-.+=+--+.-+...++
T Consensus 76 kirk~~e~~eglr~i~es~-----~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~ 127 (401)
T PF06785_consen 76 KIRKITEKDEGLRKIRESV-----EERQQESEQLQSQNQKLKNQLFHVREVFMKTKG 127 (401)
T ss_pred HHHHHHhccHHHHHHHHHH-----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 4566777777777776664 344556666666666665443333333333333
No 36
>KOG4451|consensus
Probab=87.71 E-value=24 Score=33.03 Aligned_cols=42 Identities=12% Similarity=0.193 Sum_probs=22.0
Q ss_pred HHHHHHhhHHHHHHHHhHH-HHHHHHHHHhccCCCCCCCCCCC
Q psy1409 221 DKFLETFTPKRILMHLRRI-KADKMAEMLTKRNSFGSPTHNGV 262 (320)
Q Consensus 221 ~~Fl~~f~~~R~~~h~Rk~-K~e~l~~~~~~~~~~~~~~~~~~ 262 (320)
..|+..-.+.-.+-|+|-. -.|-+-..+..+.+.-+|+|++|
T Consensus 157 ~~~~~~~~~sm~~~ha~~~~epee~~~~~~a~~t~~PP~Ps~~ 199 (286)
T KOG4451|consen 157 RGFINENLESMNIIHALETSEPEELFKVTCARQTTDPPTPSVP 199 (286)
T ss_pred HHHHHhhhhhhhhhhhccccChHHHhhhccccccCCCCCCCcc
Confidence 3444444555556676665 34445555555555445555433
No 37
>KOG0250|consensus
Probab=87.68 E-value=54 Score=36.98 Aligned_cols=107 Identities=13% Similarity=0.080 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHhh
Q psy1409 66 LLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYNL 145 (320)
Q Consensus 66 L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~~LAe~NL 145 (320)
++..++.|..+-+++..++..+.+...+++.+-+.-...+.+..|.+...|+.=-+-+++++.. -+.+.
T Consensus 223 ~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~-----------~~~i~ 291 (1074)
T KOG0250|consen 223 LDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQ-----------EEEIK 291 (1074)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH
Confidence 3444444555555555555555555555544433333344445555565555432222222221 22344
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1409 146 SQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHK 183 (320)
Q Consensus 146 ~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~ 183 (320)
.++..+..+...+...+.....+...+.+++.+.+++.
T Consensus 292 ~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~ 329 (1074)
T KOG0250|consen 292 KKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELK 329 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 45555555555555566666665555555555554443
No 38
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=87.46 E-value=59 Score=37.14 Aligned_cols=32 Identities=34% Similarity=0.394 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 151 LLEKKSQLLDLNEQLTQLSKSVESKVELIKSH 182 (320)
Q Consensus 151 Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~ 182 (320)
+..++.++...-..+..+......+..++..+
T Consensus 399 l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 430 (1163)
T COG1196 399 LEELKREIESLEERLERLSERLEDLKEELKEL 430 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444443
No 39
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=87.44 E-value=41 Score=35.28 Aligned_cols=81 Identities=22% Similarity=0.221 Sum_probs=41.1
Q ss_pred HHhhhcCHHHHHHHHHhccHHHHHHH----HHHHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHHHHHHH-----H
Q psy1409 16 LKELVNDEETFNNFTKEATATLTTES----NEQKEMLIASNKSLAEYN-----LSQEEALLEKKSQLLDLNEQL-----T 81 (320)
Q Consensus 16 L~~Ll~d~d~l~~f~~~l~~~~vk~~----~~~re~ll~~N~~LAe~N-----L~~ep~L~elr~~l~~~~~el-----~ 81 (320)
|..|-.+-+.|...+..+|. .+.++ ....++|....+.|-+++ +....+|..++.++......+ .
T Consensus 200 l~~l~~~~~~l~~~~~~iP~-l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~ 278 (569)
T PRK04778 200 LDQLEEELAALEQIMEEIPE-LLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLD 278 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChH
Confidence 33344444444444444442 23333 234556666666666544 456777888888877743333 3
Q ss_pred HHHHHHHHHHHHHHHh
Q psy1409 82 QLSKSVESKVELIKSH 97 (320)
Q Consensus 82 ~l~~~~~~~~~~~~~~ 97 (320)
...+..+.+..+.+.+
T Consensus 279 ~~~~~~~~i~~~Id~L 294 (569)
T PRK04778 279 EAEEKNEEIQERIDQL 294 (569)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 40
>KOG2236|consensus
Probab=87.44 E-value=1.2 Score=45.19 Aligned_cols=12 Identities=17% Similarity=0.047 Sum_probs=7.2
Q ss_pred CCCCCCCCCCCC
Q psy1409 285 GPGYPVSGGGMP 296 (320)
Q Consensus 285 ~~pyp~~~~~mp 296 (320)
+.||+..+++||
T Consensus 436 ~~p~~~~g~~~P 447 (483)
T KOG2236|consen 436 SNPPANFGQANP 447 (483)
T ss_pred CCCcccccccCc
Confidence 555556666666
No 41
>KOG0980|consensus
Probab=86.79 E-value=55 Score=36.19 Aligned_cols=45 Identities=22% Similarity=0.126 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Q psy1409 37 LTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLT 81 (320)
Q Consensus 37 ~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~ 81 (320)
|.+....+.++-+.+++.+|.+|+.-+.+|...-.++.....++.
T Consensus 362 q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~e 406 (980)
T KOG0980|consen 362 QYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLE 406 (980)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556678888999999999999888766555444444333333
No 42
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=86.77 E-value=28 Score=32.69 Aligned_cols=48 Identities=27% Similarity=0.355 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH--HHhcCCCCHHHHHHHhhHHH-HHHHHhHH
Q psy1409 189 DTVLALLQTAASEIEEESEKVPE--EFLNGTIDVDKFLETFTPKR-ILMHLRRI 239 (320)
Q Consensus 189 ~~l~~~Lq~a~~eaEeeSE~lae--~FL~G~idv~~Fl~~f~~~R-~~~h~Rk~ 239 (320)
+.++..|..|...-.+-+..|.+ .|.+ ++...+..+.... ++|+.|+.
T Consensus 244 ~~~~~~l~~a~~~y~el~~~l~eG~~FY~---~L~~~~~~l~~~~~~f~~~R~~ 294 (296)
T PF13949_consen 244 ESALQRLEAAYDAYKELSSNLEEGLKFYN---DLLEILNKLQQKVEDFCNARRE 294 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHc
Confidence 44667888888888888888866 6766 3777777777766 78888875
No 43
>KOG3753|consensus
Probab=86.70 E-value=1.1 Score=48.81 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=9.7
Q ss_pred HHHHHHHhhHHH
Q psy1409 220 VDKFLETFTPKR 231 (320)
Q Consensus 220 v~~Fl~~f~~~R 231 (320)
-.-||++|+++|
T Consensus 714 Eq~~l~kfre~r 725 (1114)
T KOG3753|consen 714 EQFFLKKFRESR 725 (1114)
T ss_pred HHHHHHHHHHhh
Confidence 356899999988
No 44
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=86.47 E-value=34 Score=33.49 Aligned_cols=85 Identities=15% Similarity=0.106 Sum_probs=54.4
Q ss_pred hhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CHHHHH---HHH
Q psy1409 124 TESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNV-----STDTVL---ALL 195 (320)
Q Consensus 124 k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~-----sp~~l~---~~L 195 (320)
.....++++++.+-+.+-+.+-..+-++.....+..+...+.-..+.....+...+.-+.+.. +-|+++ .-|
T Consensus 122 ~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL 201 (319)
T PF09789_consen 122 RHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYL 201 (319)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Confidence 333378888888888888888888888887776666666666666666666666666654442 244444 234
Q ss_pred HHHHHHHHHHHhH
Q psy1409 196 QTAASEIEEESEK 208 (320)
Q Consensus 196 q~a~~eaEeeSE~ 208 (320)
+..+..+++|.+-
T Consensus 202 ~erl~q~qeE~~l 214 (319)
T PF09789_consen 202 KERLKQLQEEKEL 214 (319)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555443
No 45
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=86.34 E-value=29 Score=32.42 Aligned_cols=6 Identities=50% Similarity=0.639 Sum_probs=3.0
Q ss_pred CCCCCC
Q psy1409 307 QLPQMP 312 (320)
Q Consensus 307 ~~~~~~ 312 (320)
+.|||=
T Consensus 190 Q~PPMK 195 (230)
T PF10146_consen 190 QPPPMK 195 (230)
T ss_pred cCCCcc
Confidence 346653
No 46
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=86.01 E-value=27 Score=31.80 Aligned_cols=121 Identities=20% Similarity=0.140 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH
Q psy1409 39 TESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIE 118 (320)
Q Consensus 39 k~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~~e 118 (320)
.++..-.++|-.+|+.|+..|-..+-.++..-..-+....++..| .++.+.+ ...|+.+-+.-+
T Consensus 4 ~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L-------~~q~~s~---------Qqal~~aK~l~e 67 (193)
T PF14662_consen 4 SDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDL-------RKQLKSL---------QQALQKAKALEE 67 (193)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH---------HHHHHHHHHHHH
Confidence 345556777888888888888777666655444433334444444 4444322 123333322222
Q ss_pred hhhh----hhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 119 EESE----TTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSH 182 (320)
Q Consensus 119 eesE----~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~ 182 (320)
|.-+ .+.+....-.|+++++.+=+.|-.....|..|..+... +....+.+.++..++
T Consensus 68 EledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~k-------l~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 68 ELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGK-------LLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHhhhhHHHHHHHH
Confidence 2222 23444444556666666666665555555555544444 444444444444444
No 47
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.94 E-value=57 Score=35.46 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1409 42 NEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNN 100 (320)
Q Consensus 42 ~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~ 100 (320)
...++++-.-...|...=-..--+|.+++++.....+....|.++|++...+|+.+..+
T Consensus 557 ~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R 615 (717)
T PF10168_consen 557 DLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKR 615 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444332222333455555555555555666666777777777666554
No 48
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=85.67 E-value=15 Score=32.92 Aligned_cols=63 Identities=19% Similarity=0.077 Sum_probs=40.3
Q ss_pred hhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy1409 123 TTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNN 185 (320)
Q Consensus 123 ~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~ 185 (320)
+..+..++..+-..+..+.+..-.+.-.++.+++++...-.++..+...++.++..-+++..+
T Consensus 118 l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 118 LAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666666666666666777666666666666777776666666666444
No 49
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=85.25 E-value=77 Score=36.38 Aligned_cols=42 Identities=12% Similarity=0.222 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHHHhHHHH
Q psy1409 170 KSVESKVELIKSHKNNVSTDT-VLALLQTAASEIEEESEKVPE 211 (320)
Q Consensus 170 ~~~~~k~~kl~~~~~~~sp~~-l~~~Lq~a~~eaEeeSE~lae 211 (320)
.+...+.+.++.-...-+.|+ .+..|+..+..++.+-+.|.+
T Consensus 750 ~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~ 792 (1201)
T PF12128_consen 750 EQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEE 792 (1201)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444544233345555 777888888888888777655
No 50
>KOG0995|consensus
Probab=84.96 E-value=55 Score=34.46 Aligned_cols=115 Identities=19% Similarity=0.286 Sum_probs=77.1
Q ss_pred hHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH------HHHHHHH
Q psy1409 126 SNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVL------ALLQTAA 199 (320)
Q Consensus 126 l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~------~~Lq~a~ 199 (320)
|+.+..+..+.-..+-..+-...-.|+.++.++..+-.+...++...+.+..+.... ++|+..+- ..|+..+
T Consensus 271 L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q--~iS~~dve~mn~Er~~l~r~l 348 (581)
T KOG0995|consen 271 LQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ--GISGEDVERMNLERNKLKREL 348 (581)
T ss_pred HHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHH
Confidence 444444444444455666777788888999999999999999999999998888765 78877664 4566667
Q ss_pred HHHHHHHhHHHHHHhcCCCCHHHHHHHhhHHHHHHH--HhHHHHH
Q psy1409 200 SEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMH--LRRIKAD 242 (320)
Q Consensus 200 ~eaEeeSE~lae~FL~G~idv~~Fl~~f~~~R~~~h--~Rk~K~e 242 (320)
.++.-+.|.+-...-+-+..+.+|.+.-..+=.-|| +|+++..
T Consensus 349 ~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 349 NKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777766654444445666555555443344 3444444
No 51
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=84.64 E-value=4.4 Score=41.52 Aligned_cols=68 Identities=22% Similarity=0.173 Sum_probs=56.6
Q ss_pred hccCCHHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q psy1409 8 LEHLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDL 76 (320)
Q Consensus 8 L~~lS~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~ 76 (320)
+.++|.+|++.|=-+-|-..+=+.+|.- +++++..+...++.+|+.|.++|-.++.+......++...
T Consensus 39 ~~~ltpee~kalGiegDTP~DTlrTlva-~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~a 106 (472)
T TIGR03752 39 LAELSPEELKALGIEGDTPADTLRTLVA-EVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQA 106 (472)
T ss_pred cccCCcchhHhcCCCCCCccchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4579999999998898888888888874 7999999999999999999999987766666665555554
No 52
>PHA02562 46 endonuclease subunit; Provisional
Probab=83.98 E-value=54 Score=33.61 Aligned_cols=14 Identities=14% Similarity=0.140 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q psy1409 168 LSKSVESKVELIKS 181 (320)
Q Consensus 168 L~~~~~~k~~kl~~ 181 (320)
+......++.+..+
T Consensus 356 ~~~~~~~l~~ei~~ 369 (562)
T PHA02562 356 LVDKAKKVKAAIEE 369 (562)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 53
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=83.58 E-value=14 Score=29.76 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1409 49 IASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKN 99 (320)
Q Consensus 49 l~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~ 99 (320)
+.+|-..-+.||.+.......=.++...+.+.+.+...++.+..+...++.
T Consensus 7 ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk 57 (108)
T PF02403_consen 7 IRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSK 57 (108)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 444666666666665444455567777788888888888888887776654
No 54
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=83.11 E-value=60 Score=33.46 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=53.7
Q ss_pred HHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhh-------ccHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 13 ISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNL-------SQEEALLEKKSQLLDLNEQLTQLSK 85 (320)
Q Consensus 13 ~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL-------~~ep~L~elr~~l~~~~~el~~l~~ 85 (320)
+.||+-=......|-+||..|-+ .|-++..++=.++-+--.+-+-+= .-+-+|.+.|.+=....-+++.++.
T Consensus 347 vkeLQ~k~~kQqvfvDiinkLk~-niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~ 425 (527)
T PF15066_consen 347 VKELQMKITKQQVFVDIINKLKE-NIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKA 425 (527)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHH-HHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 45555555555666667666643 455555544333322222222111 1233444444443334444555555
Q ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhh
Q psy1409 86 SVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASN 137 (320)
Q Consensus 86 ~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N 137 (320)
.|--++.++-.-++.-+ -.+-..|.-...-...+-++..|+..+-.+-...
T Consensus 426 nyv~LQEry~~eiQqKn-ksvsqclEmdk~LskKeeeverLQ~lkgelEkat 476 (527)
T PF15066_consen 426 NYVHLQERYMTEIQQKN-KSVSQCLEMDKTLSKKEEEVERLQQLKGELEKAT 476 (527)
T ss_pred hHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 55444444432111110 1111223333333444555666666665554433
No 55
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=82.52 E-value=72 Score=33.93 Aligned_cols=156 Identities=13% Similarity=0.166 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHH
Q psy1409 40 ESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNN-VSTDTVLALLQTAASEIE 118 (320)
Q Consensus 40 ~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~-~Sp~~Ll~lLq~a~~~~e 118 (320)
+++...+.+..+.+.+...--...-.+..+..++.....+...+.+.+.-+.+-..=+-+. -....|..+++.......
T Consensus 332 ~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~ 411 (594)
T PF05667_consen 332 ELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLV 411 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333444444444444444444444444444333222211111 233444444444444444
Q ss_pred hhhhhhhhHHHHHHHHHhhHHHHHHhh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHH
Q psy1409 119 EESETTESNEQKEMLIASNKSLAEYNL-------SQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTV 191 (320)
Q Consensus 119 eesE~k~l~~~~e~ll~~N~~LAe~NL-------~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l 191 (320)
+.. ..+...+.-|+..-+.|-...- .+-.+|..+|.++.....+++.-.+.+..+...+..+-...+-.+-
T Consensus 412 ~L~--~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Y 489 (594)
T PF05667_consen 412 ELA--QQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAY 489 (594)
T ss_pred HHH--HHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 332 2344455555555555554433 3344555666666666666666666666666777776666555554
Q ss_pred HHHHHH
Q psy1409 192 LALLQT 197 (320)
Q Consensus 192 ~~~Lq~ 197 (320)
..++-.
T Consensus 490 t~RIlE 495 (594)
T PF05667_consen 490 TRRILE 495 (594)
T ss_pred HHHHHH
Confidence 444433
No 56
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=82.43 E-value=72 Score=33.90 Aligned_cols=81 Identities=20% Similarity=0.154 Sum_probs=41.2
Q ss_pred HHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhc----------cHHHHHHHHHHHHHHHHHHHHH
Q psy1409 14 SELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLS----------QEEALLEKKSQLLDLNEQLTQL 83 (320)
Q Consensus 14 eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~----------~ep~L~elr~~l~~~~~el~~l 83 (320)
++|.+|..+-+.+..-+..+. ..++++..+.+....++..+.+..-- .+..|..|..-+...-+.+..|
T Consensus 335 ~~l~~l~~~i~~~~~~~~~l~-~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L 413 (594)
T PF05667_consen 335 EQLDELESQIEELEAEIKMLK-SSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVEL 413 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555543 23555555555555555555432211 2334445555555555566666
Q ss_pred HHHHHHHHHHHH
Q psy1409 84 SKSVESKVELIK 95 (320)
Q Consensus 84 ~~~~~~~~~~~~ 95 (320)
...|+....-+.
T Consensus 414 ~~qWe~~R~pL~ 425 (594)
T PF05667_consen 414 AQQWEKHRAPLI 425 (594)
T ss_pred HHHHHHHHhHHH
Confidence 666665544433
No 57
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=82.21 E-value=99 Score=35.33 Aligned_cols=8 Identities=13% Similarity=0.314 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q psy1409 239 IKADKMAE 246 (320)
Q Consensus 239 ~K~e~l~~ 246 (320)
.+...+..
T Consensus 919 ~~~~~~~~ 926 (1163)
T COG1196 919 AKLERLEV 926 (1163)
T ss_pred HHHHHHHH
Confidence 34444443
No 58
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=82.18 E-value=52 Score=32.11 Aligned_cols=47 Identities=28% Similarity=0.360 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH--HHhcCCCCHHHHHHHhhHHH-HHHHHh
Q psy1409 188 TDTVLALLQTAASEIEEESEKVPE--EFLNGTIDVDKFLETFTPKR-ILMHLR 237 (320)
Q Consensus 188 p~~l~~~Lq~a~~eaEeeSE~lae--~FL~G~idv~~Fl~~f~~~R-~~~h~R 237 (320)
-+..+..|..|...-.+-...|.+ +|-+ |+...+..|+... ++++.|
T Consensus 290 re~~lq~L~~Ay~~y~el~~nl~eG~kFY~---dL~~~~~~~~~~~~~fv~~R 339 (339)
T cd09235 290 REEVLKDLAAAYDAFMELTANLKEGTKFYN---DLTEILVKFQNKCSDFVFAR 339 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHhcC
Confidence 357888888888888888888754 7877 4788888888877 777765
No 59
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=81.83 E-value=16 Score=34.11 Aligned_cols=55 Identities=16% Similarity=0.073 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhc
Q psy1409 46 EMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSK-------SVESKVELIKSHKNN 100 (320)
Q Consensus 46 e~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~-------~~~~~~~~~~~~~~~ 100 (320)
+++.++|+.|-+.|-.++..+++++..|...--+...|.+ .+..+.++..++-..
T Consensus 145 ~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 145 EELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 3444445555555555555555555555544444444443 444455555554433
No 60
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=81.82 E-value=41 Score=30.64 Aligned_cols=114 Identities=18% Similarity=0.105 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Q psy1409 37 LTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASE 116 (320)
Q Consensus 37 ~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~ 116 (320)
....++...+.+-..|..|++.+.+....+..+..- .+.++.+.+..+++..-...+ +.-...|...+
T Consensus 23 en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqa----l~~aK~l~eEledLk~~~~~l------EE~~~~L~aq~-- 90 (193)
T PF14662_consen 23 ENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQA----LQKAKALEEELEDLKTLAKSL------EEENRSLLAQA-- 90 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH--
Confidence 355566677777778888888777777777666432 333334444333333322211 11122222222
Q ss_pred HHhhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy1409 117 IEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLS 169 (320)
Q Consensus 117 ~eeesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~ 169 (320)
+.+..+...|.+....|=+.|-......+.++.+..+.+.+...|+
T Consensus 91 -------rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq 136 (193)
T PF14662_consen 91 -------RQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQ 136 (193)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHH
Confidence 2333344445555555555565555566666655444444444443
No 61
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=81.73 E-value=47 Score=31.26 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=17.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 62 QEEALLEKKSQLLDLNEQLTQLSKSVESKVELI 94 (320)
Q Consensus 62 ~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~ 94 (320)
++-.++.++.++...-.+++.+.++.+....++
T Consensus 50 ~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 50 LEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555554444444433
No 62
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=81.72 E-value=65 Score=33.36 Aligned_cols=46 Identities=24% Similarity=0.206 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 45 KEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESK 90 (320)
Q Consensus 45 re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~ 90 (320)
.+.+..+...+-+.+-..+-.|..++.++.+.-.++..-.+.+.+.
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~ 321 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQ 321 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444445555555555555566666666666555554444444443
No 63
>KOG0972|consensus
Probab=81.16 E-value=56 Score=31.82 Aligned_cols=157 Identities=20% Similarity=0.242 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Q psy1409 44 QKEMLIASNKSLAEYNLSQEEALLEKKSQLLDL-------NEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASE 116 (320)
Q Consensus 44 ~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~-------~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~ 116 (320)
..+.++.+|-.-+++-|+.+--|=.||--+..- .++...++...+++...-.. -+..|-.+..+
T Consensus 189 ~~~~vl~s~tDa~eW~lEvERVlPQLKVt~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~---------~Ldklh~eit~ 259 (384)
T KOG0972|consen 189 PLQSVLQSNTDAIEWKLEVERVLPQLKVTLKQDAKDWRLHLEQMNSMHKNIEQKVGNVGP---------YLDKLHKEITK 259 (384)
T ss_pred hHHHHHhhcchHHHHHHHHHHhhhhheehhccccHHHHHHHHHHHHHHHHHHHhhcchhH---------HHHHHHHHHHH
Confidence 345599999999999999998887777655432 23333333333333332222 23333333221
Q ss_pred -HH-hhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Q psy1409 117 -IE-EESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLAL 194 (320)
Q Consensus 117 -~e-eesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~ 194 (320)
.| -.|-.+.++.+...|+..-+.+...--..+..-..+..-+..+...+.+.-...+.+.++..+--.+.|..+-+..
T Consensus 260 ~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvk 339 (384)
T KOG0972|consen 260 ALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVK 339 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHH
Confidence 11 1344577888888888777765544444444444444445567777778888888888888888888888888889
Q ss_pred HHHHHHHHHHHHhHH
Q psy1409 195 LQTAASEIEEESEKV 209 (320)
Q Consensus 195 Lq~a~~eaEeeSE~l 209 (320)
++.|+++..++.-.+
T Consensus 340 IkqavsKLk~et~~m 354 (384)
T KOG0972|consen 340 IKQAVSKLKEETQTM 354 (384)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998887664
No 64
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=80.70 E-value=54 Score=32.58 Aligned_cols=164 Identities=20% Similarity=0.242 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHH-HHh-
Q psy1409 43 EQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNV-STDTVLALLQTAASE-IEE- 119 (320)
Q Consensus 43 ~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~-Sp~~Ll~lLq~a~~~-~ee- 119 (320)
.....++.++-.-++++|+.+--+=.||-.+.... +.=...+++..+-...+...+ ....-+..|...... .|.
T Consensus 181 ~~~~~i~es~vd~~eWklEvERV~PqLKv~~~~d~---kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI 257 (359)
T PF10498_consen 181 QKPEEIIESKVDPAEWKLEVERVLPQLKVTIRADA---KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKI 257 (359)
T ss_pred cchhhcccccCCHHHHHHHHHHHhhhheeeccCCc---chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888999999998877776654333221 222222333233223232222 112233344444322 221
Q ss_pred hhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q psy1409 120 ESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAA 199 (320)
Q Consensus 120 esE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~ 199 (320)
.+-.+.++...+.++..=++.....-+.+....+.-..+.++..++..+.++.+...++.++-..+.+..+=+.+++.|+
T Consensus 258 ~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl 337 (359)
T PF10498_consen 258 ESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQAL 337 (359)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 22346788888888888666666666667777777777888888999999999999999999888888888888888888
Q ss_pred HHHHHHHhHH
Q psy1409 200 SEIEEESEKV 209 (320)
Q Consensus 200 ~eaEeeSE~l 209 (320)
.+.-.|--.|
T Consensus 338 ~kLk~EI~qM 347 (359)
T PF10498_consen 338 TKLKQEIKQM 347 (359)
T ss_pred HHHHHHHHHh
Confidence 8887776554
No 65
>KOG0980|consensus
Probab=80.43 E-value=1e+02 Score=34.27 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=29.6
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 53 KSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIK 95 (320)
Q Consensus 53 ~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~ 95 (320)
+++=+.++..+.+.+.++......+.+=..|..+|++..+++.
T Consensus 413 ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle 455 (980)
T KOG0980|consen 413 EEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLE 455 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555667777777777777777777777777777777666654
No 66
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=80.23 E-value=54 Score=31.05 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=35.1
Q ss_pred HHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 14 SELKELVNDEETFNNFTKEATATLTTESNEQKEMLIAS-NKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVE 92 (320)
Q Consensus 14 eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~-N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~ 92 (320)
++|..|++-=..|-+-|+.|. .+.+.+......+... -.......-.++..|..+|..|.....+-..+.-..+.+..
T Consensus 4 ~eL~~LNdRla~YIekVr~LE-~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~ 82 (312)
T PF00038_consen 4 EELQSLNDRLASYIEKVRFLE-QENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKE 82 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence 456655543333333333432 1233333333333333 12223334446777777777766665555555444444333
Q ss_pred HHH
Q psy1409 93 LIK 95 (320)
Q Consensus 93 ~~~ 95 (320)
..+
T Consensus 83 e~~ 85 (312)
T PF00038_consen 83 ELE 85 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 67
>KOG4643|consensus
Probab=79.62 E-value=1.1e+02 Score=34.42 Aligned_cols=85 Identities=19% Similarity=0.219 Sum_probs=44.7
Q ss_pred hhhhhhHHHHHHHHH--hhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcCCHHHHHHHH
Q psy1409 121 SETTESNEQKEMLIA--SNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELI---KSHKNNVSTDTVLALL 195 (320)
Q Consensus 121 sE~k~l~~~~e~ll~--~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl---~~~~~~~sp~~l~~~L 195 (320)
.|...|...+..|.. +|..+-+.|......+..-..+++ ..+..+....+.++.+. .-.+...-+.--..+|
T Consensus 544 ~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~i---daL~alrrhke~LE~e~mnQql~~d~~~~kr~ie~L 620 (1195)
T KOG4643|consen 544 EENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYI---DALNALRRHKEKLEEEIMNQQLFEDPIPLKRDIEWL 620 (1195)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhcCCchhhhHHHH
Confidence 344455555555555 666666666655444443333333 44455555555555443 2244454666777777
Q ss_pred HHHHHHHHHHHhH
Q psy1409 196 QTAASEIEEESEK 208 (320)
Q Consensus 196 q~a~~eaEeeSE~ 208 (320)
..++.+.=.....
T Consensus 621 r~~~~kll~~Kkd 633 (1195)
T KOG4643|consen 621 RRKESKLLKEKKD 633 (1195)
T ss_pred HHHHHhhcchhHH
Confidence 7775544444333
No 68
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=79.12 E-value=1.3e+02 Score=34.65 Aligned_cols=36 Identities=11% Similarity=0.125 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcCCCCHHHHHHH
Q psy1409 191 VLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLET 226 (320)
Q Consensus 191 l~~~Lq~a~~eaEeeSE~lae~FL~G~idv~~Fl~~ 226 (320)
-+..++..+.++.+..+.|-...--+.=++-.||..
T Consensus 512 ~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~ 547 (1201)
T PF12128_consen 512 ELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRK 547 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHh
Confidence 344555666666667777655532233356777754
No 69
>PRK04863 mukB cell division protein MukB; Provisional
Probab=79.07 E-value=1.4e+02 Score=35.22 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=10.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHH
Q psy1409 174 SKVELIKSHKNNVSTDTVLALL 195 (320)
Q Consensus 174 ~k~~kl~~~~~~~sp~~l~~~L 195 (320)
.....+..+.++.++.....+-
T Consensus 477 ~~~~~l~~~~Gkv~~~~a~~~~ 498 (1486)
T PRK04863 477 QAYQLVRKIAGEVSRSEAWDVA 498 (1486)
T ss_pred HHHHHHHHHcCCcCHHHHHHHH
Confidence 3333333444555555555433
No 70
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=78.95 E-value=51 Score=31.39 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy1409 126 SNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQL 168 (320)
Q Consensus 126 l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L 168 (320)
+....+.|...|..|+....+.+..--.....+..+|+.+...
T Consensus 11 l~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~ 53 (258)
T PF15397_consen 11 LKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTA 53 (258)
T ss_pred HHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555444444444444444444433
No 71
>PRK11281 hypothetical protein; Provisional
Probab=78.95 E-value=1.3e+02 Score=34.55 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=10.0
Q ss_pred hhhhHHHHHHHHHhhHHHH
Q psy1409 123 TTESNEQKEMLIASNKSLA 141 (320)
Q Consensus 123 ~k~l~~~~e~ll~~N~~LA 141 (320)
...++.+...+-++|.-.-
T Consensus 194 ~~~l~ae~~~l~~~~~~~~ 212 (1113)
T PRK11281 194 RVLLQAEQALLNAQNDLQR 212 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566666655554433
No 72
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=77.96 E-value=29 Score=26.57 Aligned_cols=32 Identities=25% Similarity=0.119 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Q psy1409 39 TESNEQKEMLIASNKSLAEYNLSQEEALLEKK 70 (320)
Q Consensus 39 k~~~~~re~ll~~N~~LAe~NL~~ep~L~elr 70 (320)
.-++.+.+.|...|.+|.+.|-.++.....+|
T Consensus 21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 21 ALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34455566666666666554444444444333
No 73
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=77.27 E-value=49 Score=28.83 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q psy1409 63 EEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAAS 115 (320)
Q Consensus 63 ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~ 115 (320)
...|..+..++.+..+++..++..+..+...+..+....+.+.|...+..-..
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~ 123 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEE 123 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 45688888889999999999999999999999999999999988865544433
No 74
>KOG1853|consensus
Probab=76.69 E-value=72 Score=30.50 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=26.2
Q ss_pred HHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q psy1409 16 LKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLD 75 (320)
Q Consensus 16 L~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~ 75 (320)
++..++--+.|.+|-...-+ --.++....+.+-..|+.|--.|--+.-.++..|.....
T Consensus 26 kq~f~~~reEl~EFQegSrE-~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~ 84 (333)
T KOG1853|consen 26 KQHFLQMREELNEFQEGSRE-IEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQED 84 (333)
T ss_pred HHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443321 123334444555555555555554444444444444333
No 75
>KOG4643|consensus
Probab=76.60 E-value=1.4e+02 Score=33.78 Aligned_cols=84 Identities=15% Similarity=0.177 Sum_probs=49.7
Q ss_pred CHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q psy1409 22 DEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYN--LSQEEALLEKKSQLLDLNEQL-------TQLSKSVESKVE 92 (320)
Q Consensus 22 d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~N--L~~ep~L~elr~~l~~~~~el-------~~l~~~~~~~~~ 92 (320)
|-|.+.+-+.++-+| -.-+..+++||-.+.+.+-.+| ..++..|..+++++...-.+. .+|.+....++-
T Consensus 258 Ds~fykdRveelked-N~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~ 336 (1195)
T KOG4643|consen 258 DSDFYKDRVEELKED-NRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQV 336 (1195)
T ss_pred hhHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 445555555555432 3445667888888888877777 677777777777666654444 444444444455
Q ss_pred HHHHhhhcCCHHHH
Q psy1409 93 LIKSHKNNVSTDTV 106 (320)
Q Consensus 93 ~~~~~~~~~Sp~~L 106 (320)
+...+-..|+...+
T Consensus 337 q~eqL~~~~ellq~ 350 (1195)
T KOG4643|consen 337 QKEQLDGQMELLQI 350 (1195)
T ss_pred HHHHhhhhhhHhhh
Confidence 55555555554444
No 76
>KOG1984|consensus
Probab=76.06 E-value=7.6 Score=42.56 Aligned_cols=12 Identities=8% Similarity=-0.280 Sum_probs=6.2
Q ss_pred CCCCCCCCCCCC
Q psy1409 285 GPGYPVSGGGMP 296 (320)
Q Consensus 285 ~~pyp~~~~~mp 296 (320)
+.||..+.++||
T Consensus 190 a~pp~a~~~~p~ 201 (1007)
T KOG1984|consen 190 AFPPGAQMQPPP 201 (1007)
T ss_pred CCCCccCCCCCC
Confidence 445555555553
No 77
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=75.44 E-value=34 Score=26.15 Aligned_cols=63 Identities=19% Similarity=0.334 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1409 38 TTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNN 100 (320)
Q Consensus 38 vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~ 100 (320)
+.+=...+..|+.+=+.|+...+.....|..||.++.+.-..+..++.+.+...+....+...
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456678889999999999999999999999999999999999988888887777765543
No 78
>PRK09039 hypothetical protein; Validated
Probab=75.42 E-value=87 Score=30.81 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy1409 148 EEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEF 213 (320)
Q Consensus 148 ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~F 213 (320)
.+++..++.++...-..+..|....+..+.+..+...+ -+.+-..|+.++.+-..+-..+..+|
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~--i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAK--IADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34444444444444444555555555554444433222 23345666666555333444445555
No 79
>PRK02224 chromosome segregation protein; Provisional
Probab=75.37 E-value=1.3e+02 Score=32.85 Aligned_cols=12 Identities=42% Similarity=0.595 Sum_probs=4.5
Q ss_pred HHHHHHHHHhHH
Q psy1409 198 AASEIEEESEKV 209 (320)
Q Consensus 198 a~~eaEeeSE~l 209 (320)
.+...+.+-+.+
T Consensus 385 ~l~~l~~el~el 396 (880)
T PRK02224 385 EIEELEEEIEEL 396 (880)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 80
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=75.30 E-value=62 Score=29.07 Aligned_cols=56 Identities=18% Similarity=0.102 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHH
Q psy1409 100 NVSTDTVLALLQTAASEIEEESET-TESNEQKEMLIASNKSLAEYNLSQEEALLEKK 155 (320)
Q Consensus 100 ~~Sp~~Ll~lLq~a~~~~eeesE~-k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr 155 (320)
..+.+.++..|.++-...+++++| --+....|.....|..|++.+-....++..++
T Consensus 59 s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~ 115 (182)
T PF15035_consen 59 SPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLR 115 (182)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999998888888888 22333444444555555444444444444333
No 81
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=74.78 E-value=1.4e+02 Score=32.76 Aligned_cols=191 Identities=12% Similarity=0.112 Sum_probs=84.7
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Q psy1409 23 EETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEA----LLEKKSQLLDLNEQLTQLSKSVESKVE-LIKSH 97 (320)
Q Consensus 23 ~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~----L~elr~~l~~~~~el~~l~~~~~~~~~-~~~~~ 97 (320)
.++++.|+.++. -.++.-.+++-.+.++...+=+..=|+ +..+|.+.....+.+..+++....... .-..+
T Consensus 29 ~~~~d~~ls~l~----~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~~s~ 104 (766)
T PF10191_consen 29 LEKADAHLSSLV----MKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTAQSM 104 (766)
T ss_pred hhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 456777777763 333444444444444444433333333 333333333333333333333222111 00111
Q ss_pred hhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhh--HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 98 KNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASN--KSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESK 175 (320)
Q Consensus 98 ~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N--~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k 175 (320)
..=...+.+..+|+.+..-..|-..--.+-.+.++++.++ ..+|.+.-+.+..|..+. ..-++..-+...+.+
T Consensus 105 ~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~l~-----~~pd~~~r~~~le~l 179 (766)
T PF10191_consen 105 AQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRSLAVLQ-----DVPDYEERRQQLEAL 179 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc-----CCCchhHHHHHHHHH
Confidence 1112245666666666544444444555666677777664 234444444444444332 111223333344444
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHH-HHHhHHHHHHhcCCCC-HHHHHHHhhHHHH
Q psy1409 176 VELIKSHKNNVSTDTVLALLQTAASEIE-EESEKVPEEFLNGTID-VDKFLETFTPKRI 232 (320)
Q Consensus 176 ~~kl~~~~~~~sp~~l~~~Lq~a~~eaE-eeSE~lae~FL~G~id-v~~Fl~~f~~~R~ 232 (320)
+.+++.+. +| .|..|....+ +.+..++.=|- .|+ ..+|..-|...|+
T Consensus 180 ~nrLEa~v---sp-----~Lv~al~~~~~~~~~~~~~if~--~i~R~~~l~~~Y~~~r~ 228 (766)
T PF10191_consen 180 KNRLEALV---SP-----QLVQALNSRDVDAAKEYVKIFS--SIGREPQLEQYYCKCRK 228 (766)
T ss_pred HHHHHHHh---hH-----HHHHHHHhcCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH
Confidence 45555542 22 2222333222 33444444442 222 6778887777665
No 82
>KOG1923|consensus
Probab=74.29 E-value=5.2 Score=43.14 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhcCC
Q psy1409 193 ALLQTAASEIEEESEKVPEEFLNGT 217 (320)
Q Consensus 193 ~~Lq~a~~eaEeeSE~lae~FL~G~ 217 (320)
..|+.-+.+.|+.-+.++.. ++|+
T Consensus 220 s~m~k~~~~~e~~lk~~~~~-l~~k 243 (830)
T KOG1923|consen 220 SCMQKLSIEKERSLKAIARL-LETK 243 (830)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccCC
Confidence 34555555666655555444 4543
No 83
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=74.16 E-value=96 Score=30.76 Aligned_cols=75 Identities=13% Similarity=0.134 Sum_probs=53.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----C-HHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy1409 139 SLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNV----S-TDTVLALLQTAASEIEEESEKVPEEF 213 (320)
Q Consensus 139 ~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~----s-p~~l~~~Lq~a~~eaEeeSE~lae~F 213 (320)
.+-+.|-..+-.|+++..+..++-++..+|..+..+-...++.+.+-| . +..++..=|+.+.+.|..-+.+--.|
T Consensus 138 ~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~Ei 217 (401)
T PF06785_consen 138 HLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEI 217 (401)
T ss_pred HHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 366788888999999998888888888888777776666665555444 2 34567777788888777766654433
No 84
>KOG0999|consensus
Probab=74.11 E-value=1.2e+02 Score=32.03 Aligned_cols=154 Identities=18% Similarity=0.126 Sum_probs=98.6
Q ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHH--------HHHHhhhhhhhhHH
Q psy1409 57 EYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAA--------SEIEEESETTESNE 128 (320)
Q Consensus 57 e~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~--------~~~eeesE~k~l~~ 128 (320)
+.-..++.+++++.........|+..+++.|-+-...++ .+..-..+.=-.||+..+ ..++-+.|.+.+..
T Consensus 43 eeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hk-k~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~ 121 (772)
T KOG0999|consen 43 EEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHK-KVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQ 121 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 455556777777777777777788888888777766665 444555666667788775 45667778888888
Q ss_pred HHHHHHHhhHHHHHHhhh-------hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH----HHHHHhhcCCHHHHHHHHH
Q psy1409 129 QKEMLIASNKSLAEYNLS-------QEEALLEKKSQLLD-LNEQLTQLSKSVESKVE----LIKSHKNNVSTDTVLALLQ 196 (320)
Q Consensus 129 ~~e~ll~~N~~LAe~NL~-------~ep~Leelr~ql~~-~y~el~~L~~~~~~k~~----kl~~~~~~~sp~~l~~~Lq 196 (320)
+......+|++|+..+-. .+.+-..+|+++.+ +|.+.+-| ..|.+++. -++.++.-.+.+.=+.-|+
T Consensus 122 el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rll-seYSELEEENIsLQKqVs~LR~sQVEyEglk 200 (772)
T KOG0999|consen 122 ELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLL-SEYSELEEENISLQKQVSNLRQSQVEYEGLK 200 (772)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcchHHHHHHHHhhhhhhhhHHH
Confidence 888888888888765543 23333334444433 33333322 33444432 2333555556677778888
Q ss_pred HHHHHHHHHHhHHHHH
Q psy1409 197 TAASEIEEESEKVPEE 212 (320)
Q Consensus 197 ~a~~eaEeeSE~lae~ 212 (320)
..+...+++.+-|-.+
T Consensus 201 heikRleEe~elln~q 216 (772)
T KOG0999|consen 201 HEIKRLEEETELLNSQ 216 (772)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999998876555
No 85
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=74.08 E-value=11 Score=33.76 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhc
Q psy1409 193 ALLQTAASEIEEESEKVPEEFLN 215 (320)
Q Consensus 193 ~~Lq~a~~eaEeeSE~lae~FL~ 215 (320)
..+.......+.|-..|.++|++
T Consensus 161 ~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 161 NMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555543
No 86
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=73.14 E-value=36 Score=28.11 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 39 TESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELI 94 (320)
Q Consensus 39 k~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~ 94 (320)
..++..+|....++..|+.++-.++..+..|+.+-...+..+..|+.++.+..+.+
T Consensus 19 a~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 19 ASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555444444444444444444444444444444444433333
No 87
>PRK09039 hypothetical protein; Validated
Probab=72.72 E-value=1e+02 Score=30.35 Aligned_cols=93 Identities=11% Similarity=0.041 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCH-HHHHH
Q psy1409 37 LTTESNEQKEMLIASNKSLAE-------YNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVST-DTVLA 108 (320)
Q Consensus 37 ~vk~~~~~re~ll~~N~~LAe-------~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp-~~Ll~ 108 (320)
++.....+.+.+-+.+-.|++ .|...+..|.+++.++.. +...-..+...+....+..++ +.-..
T Consensus 47 ~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~-------a~~~r~~Le~~~~~~~~~~~~~~~~~~ 119 (343)
T PRK09039 47 EISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSA-------AEAERSRLQALLAELAGAGAAAEGRAG 119 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhhhcchHHHHHH
Confidence 456666666666666666663 334444455444444443 333333333333333332222 22222
Q ss_pred HHHHH-----HHHHHhhhhhhhhHHHHHHHHHh
Q psy1409 109 LLQTA-----ASEIEEESETTESNEQKEMLIAS 136 (320)
Q Consensus 109 lLq~a-----~~~~eeesE~k~l~~~~e~ll~~ 136 (320)
.|+.+ ....+..+++..|+.+++.|.++
T Consensus 120 ~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 120 ELAQELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 23222 13344555566666666665555
No 88
>KOG1029|consensus
Probab=72.60 E-value=1.6e+02 Score=32.56 Aligned_cols=12 Identities=8% Similarity=0.008 Sum_probs=5.6
Q ss_pred HHHHHHhhHHHH
Q psy1409 221 DKFLETFTPKRI 232 (320)
Q Consensus 221 ~~Fl~~f~~~R~ 232 (320)
..|...|.+..+
T Consensus 638 ~~k~~~~~e~~~ 649 (1118)
T KOG1029|consen 638 ANKNDAFGEFKK 649 (1118)
T ss_pred hhhhhhhccccc
Confidence 444555544443
No 89
>PRK04863 mukB cell division protein MukB; Provisional
Probab=72.53 E-value=2.1e+02 Score=33.92 Aligned_cols=44 Identities=9% Similarity=0.099 Sum_probs=25.2
Q ss_pred Hhhh--cCCHHHHHHHHHHHHHHHH-hhhhhhhhHHHHHHHHHhhHH
Q psy1409 96 SHKN--NVSTDTVLALLQTAASEIE-EESETTESNEQKEMLIASNKS 139 (320)
Q Consensus 96 ~~~~--~~Sp~~Ll~lLq~a~~~~e-eesE~k~l~~~~e~ll~~N~~ 139 (320)
.+.+ .+|.+.|...|..-....+ ...+..++....+++-+....
T Consensus 428 ~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leq 474 (1486)
T PRK04863 428 QLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQ 474 (1486)
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3454 7888999888888764443 333334445554444444433
No 90
>KOG0161|consensus
Probab=72.29 E-value=2.4e+02 Score=34.39 Aligned_cols=120 Identities=20% Similarity=0.164 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHH-HHHHhh
Q psy1409 42 NEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAA-SEIEEE 120 (320)
Q Consensus 42 ~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~-~~~eee 120 (320)
+...+.+....+.|....-.++-.|..+..++.+....+.++.....++..+..++.+.+ +.-...+..+. ...|-.
T Consensus 1054 ~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~l--e~er~~r~K~ek~r~dL~ 1131 (1930)
T KOG0161|consen 1054 QESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEEL--EAERASRAKAERQRRDLS 1131 (1930)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 333333444444455555555555555555555555555555555555555555555432 22222222222 445555
Q ss_pred hhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHH
Q psy1409 121 SETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNE 163 (320)
Q Consensus 121 sE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~ 163 (320)
.++.++..+.++...+-....+-|-.++.++..++..+.....
T Consensus 1132 ~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~ 1174 (1930)
T KOG0161|consen 1132 EELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETL 1174 (1930)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777777777777778888877776655433
No 91
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=71.90 E-value=37 Score=32.95 Aligned_cols=75 Identities=20% Similarity=0.302 Sum_probs=20.4
Q ss_pred HHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 14 SELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESK 90 (320)
Q Consensus 14 eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~ 90 (320)
.++.....+-+.+..|+..+.. ......+.+.+..+...|-+..-....+|.++..+..+.-.++..+....+.+
T Consensus 16 ~~~~~~~~E~~~Y~~fL~~l~~--~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 16 KQLEQAEKERDTYQEFLKKLEE--ESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp ----------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888888877641 12223344444444444444444444444444444444444444444433333
No 92
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=71.65 E-value=93 Score=30.08 Aligned_cols=32 Identities=9% Similarity=0.160 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 64 EALLEKKSQLLDLNEQLTQLSKSVESKVELIK 95 (320)
Q Consensus 64 p~L~elr~~l~~~~~el~~l~~~~~~~~~~~~ 95 (320)
--|..||..|.+....|..-....+++..++-
T Consensus 68 V~iRHLkakLkes~~~l~dRetEI~eLksQL~ 99 (305)
T PF15290_consen 68 VCIRHLKAKLKESENRLHDRETEIDELKSQLA 99 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444555554444444444444444444443
No 93
>PF13514 AAA_27: AAA domain
Probab=71.62 E-value=1.9e+02 Score=32.94 Aligned_cols=103 Identities=20% Similarity=0.222 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCC---CHHHHH
Q psy1409 148 EEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTI---DVDKFL 224 (320)
Q Consensus 148 ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~FL~G~i---dv~~Fl 224 (320)
+..+..+...+...-.++..+......+..++..+.+.-... .+......+..+-+.++++|+.-.+ -+..=+
T Consensus 895 ~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a----~l~~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~ 970 (1111)
T PF13514_consen 895 EAELEELEEELEELEEELEELQEERAELEQELEALEGDDDAA----ELEQEREEAEAELEELAEEWAALRLAAELLEEAI 970 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555565556666666667777777777765544333 3444444444444444555432111 133334
Q ss_pred HHhhHHHHHHHHhHHHHHHHHHHHhccCCCCC
Q psy1409 225 ETFTPKRILMHLRRIKADKMAEMLTKRNSFGS 256 (320)
Q Consensus 225 ~~f~~~R~~~h~Rk~K~e~l~~~~~~~~~~~~ 256 (320)
..|...+.=.-++ +...+-..|..++|...
T Consensus 971 ~~~r~~~~p~vl~--~As~~f~~LT~G~Y~~l 1000 (1111)
T PF13514_consen 971 ERYREERQPPVLA--RASEYFSRLTGGRYSRL 1000 (1111)
T ss_pred HHHHHHhhHHHHH--HHHHHHHHHhCCCCcee
Confidence 4444433111111 34444445555666543
No 94
>KOG0250|consensus
Probab=71.60 E-value=1.9e+02 Score=32.94 Aligned_cols=40 Identities=8% Similarity=0.062 Sum_probs=23.6
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1409 59 NLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHK 98 (320)
Q Consensus 59 NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~ 98 (320)
+.-++.++..+...+..++.....+...+.++..+..++.
T Consensus 290 i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~ 329 (1074)
T KOG0250|consen 290 IKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELK 329 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3445666666666666666666666655555555554443
No 95
>KOG2652|consensus
Probab=71.57 E-value=41 Score=33.22 Aligned_cols=37 Identities=30% Similarity=0.470 Sum_probs=24.5
Q ss_pred HHHHHHhHHHHHHhcCCCCHHHHHHHhhHHHHHHHHhHHHHHHHHHH
Q psy1409 201 EIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRIKADKMAEM 247 (320)
Q Consensus 201 eaEeeSE~lae~FL~G~idv~~Fl~~f~~~R~~~h~Rk~K~e~l~~~ 247 (320)
-+|..-..+-+.|++-.||.. .|.-+|.+++.||-.-
T Consensus 14 VIeDVI~~vRe~F~~~GiDeq----------vL~eLk~lWe~Kl~qs 50 (348)
T KOG2652|consen 14 VIEDVINNVREDFLENGIDEQ----------VLSELKNLWETKLIQS 50 (348)
T ss_pred HHHHHHHHHHHHHHhcCccHH----------HHHHHHHHHHHHHHhh
Confidence 355666667778886667744 5566777777777654
No 96
>KOG0996|consensus
Probab=71.45 E-value=2e+02 Score=33.16 Aligned_cols=54 Identities=28% Similarity=0.317 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 126 SNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELI 179 (320)
Q Consensus 126 l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl 179 (320)
|....+.++..-..+-..-+.....+.+.+..+.....++..++.++.++.+.+
T Consensus 512 L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l 565 (1293)
T KOG0996|consen 512 LLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKEL 565 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhH
Confidence 333333444444444444444344444444333333333333444443333333
No 97
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=71.21 E-value=22 Score=28.48 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=38.3
Q ss_pred HHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy1409 133 LIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNN 185 (320)
Q Consensus 133 ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~ 185 (320)
++..|......++.+.-.......++...+.+.+.+..+.+.+..+.+.++..
T Consensus 6 ~ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~ 58 (108)
T PF02403_consen 6 LIRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKE 58 (108)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 45567777777777765445555666688888888888888888887777644
No 98
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=70.84 E-value=1.4e+02 Score=31.26 Aligned_cols=105 Identities=14% Similarity=0.176 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q psy1409 125 ESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEE 204 (320)
Q Consensus 125 ~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~eaEe 204 (320)
.+....+.+...-..+-+.-.+....|..++..-...-..+..+..........+....-.--|+..+..+. .+..
T Consensus 380 el~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~----~~~~ 455 (569)
T PRK04778 380 ELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFF----EVSD 455 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH----HHHH
Confidence 334444444444444555555555556666655444444444444444444444434323335555555555 4455
Q ss_pred HHhHHHHHHhcCCCCHHHHHHHhhHHHHH
Q psy1409 205 ESEKVPEEFLNGTIDVDKFLETFTPKRIL 233 (320)
Q Consensus 205 eSE~lae~FL~G~idv~~Fl~~f~~~R~~ 233 (320)
+-+.+...+-.|.|+++.--..|......
T Consensus 456 ~i~~l~~~L~~g~VNm~ai~~e~~e~~~~ 484 (569)
T PRK04778 456 EIEALAEELEEKPINMEAVNRLLEEATED 484 (569)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 55666667667888888777677777633
No 99
>PF09204 Colicin_immun: Bacterial self-protective colicin-like immunity; InterPro: IPR015287 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). Colicin D immunity protein (ImmD) inhibits the bactericidal activity of colicin D by binding to its tRNase catalytic domain []. This entry represents the structural domain of ImmD and related klebicin and microcin immunity proteins. ; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1V74_B 1TFO_B 1TFK_B.
Probab=70.58 E-value=4 Score=32.54 Aligned_cols=21 Identities=33% Similarity=0.748 Sum_probs=18.8
Q ss_pred HHHHHHhcCCCCHHHHHHHhh
Q psy1409 208 KVPEEFLNGTIDVDKFLETFT 228 (320)
Q Consensus 208 ~lae~FL~G~idv~~Fl~~f~ 228 (320)
.+|.+|++|+|+-++|-+.|.
T Consensus 7 ~la~~Fv~~~IsA~~Fse~y~ 27 (88)
T PF09204_consen 7 ELARSFVNGEISADEFSEAYI 27 (88)
T ss_dssp HHHHHHHTTSS-HHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHH
Confidence 579999999999999999998
No 100
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=70.31 E-value=2.2e+02 Score=33.28 Aligned_cols=161 Identities=14% Similarity=0.127 Sum_probs=70.0
Q ss_pred HHhccCCHHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH--------HhhccHHHHHHHHHHHHHHH
Q psy1409 6 SLLEHLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAE--------YNLSQEEALLEKKSQLLDLN 77 (320)
Q Consensus 6 ~~L~~lS~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe--------~NL~~ep~L~elr~~l~~~~ 77 (320)
+-|-.++-.+|..|-++=+.++.+=..+. .+++-....+.+....+..++ .-+...-.+.+++.++....
T Consensus 212 ~~l~~l~~~~i~~l~e~~~~~~~~~~~le--~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (1353)
T TIGR02680 212 EALPPLDDDELTDVADALEQLDEYRDELE--RLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRAR 289 (1353)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555666666666666666666655543 233334444444443333333 33334444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHh--hhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHH
Q psy1409 78 EQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEE--ESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKK 155 (320)
Q Consensus 78 ~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~~ee--esE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr 155 (320)
.++....+..+....+...+. ..+.......++ .|+.-....+.+.+-.+.+.+++.--.+...+...+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~le---------~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a~ 360 (1353)
T TIGR02680 290 DELETAREEERELDARTEALE---------READALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAIREAE 360 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444443333322 222222222221 122222233344444455555554444554554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1409 156 SQLLDLNEQLTQLSKSVESKVE 177 (320)
Q Consensus 156 ~ql~~~y~el~~L~~~~~~k~~ 177 (320)
....+.-.++..+...+.....
T Consensus 361 ~~~e~~~~~~~~~~~r~~~~~~ 382 (1353)
T TIGR02680 361 SRLEEERRRLDEEAGRLDDAER 382 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333333
No 101
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=70.22 E-value=50 Score=25.83 Aligned_cols=44 Identities=18% Similarity=0.173 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 42 NEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVES 89 (320)
Q Consensus 42 ~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~ 89 (320)
+.+.+++...|..|++.+-. +...|..|....+.+++=...|.+
T Consensus 24 qmEieELKekn~~L~~e~~~----~~~~r~~L~~en~qLk~E~~~Wqe 67 (79)
T PRK15422 24 QMEIEELKEKNNSLSQEVQN----AQHQREELERENNHLKEQQNGWQE 67 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554322 223344455444444444444443
No 102
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.19 E-value=47 Score=25.50 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1409 45 KEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNN 100 (320)
Q Consensus 45 re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~ 100 (320)
..-|..+++.|-+.|-++.....+++......-.+-.+|++...--+.+++.+.++
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555555555444444444444444444444444433334444554444
No 103
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=69.83 E-value=77 Score=27.82 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 65 ALLEKKSQLLDLNEQLTQLSKSVESKVELIK 95 (320)
Q Consensus 65 ~L~elr~~l~~~~~el~~l~~~~~~~~~~~~ 95 (320)
.....+..+....+.+..+.+.|..+.++..
T Consensus 117 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~ 147 (191)
T PF04156_consen 117 DLQELRELLKSVEERLDSLDESIKELEKEIR 147 (191)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444433433333333
No 104
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=69.47 E-value=46 Score=25.08 Aligned_cols=60 Identities=18% Similarity=0.080 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1409 38 TTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSH 97 (320)
Q Consensus 38 vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~ 97 (320)
++.+..-.+.|+.-...|-+.|..+...+..++++-....+.......+++....+++.+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 355666778888888888888888877777777776666666666667777777766644
No 105
>PRK03918 chromosome segregation protein; Provisional
Probab=69.45 E-value=1.8e+02 Score=31.76 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 66 LLEKKSQLLDLNEQLTQLSKSVESKVE 92 (320)
Q Consensus 66 L~elr~~l~~~~~el~~l~~~~~~~~~ 92 (320)
|.+++.++...-.++..+...+..+..
T Consensus 195 l~~l~~~~~~l~~ei~~l~~e~~~l~~ 221 (880)
T PRK03918 195 IKEKEKELEEVLREINEISSELPELRE 221 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444443444444444333333333
No 106
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=69.29 E-value=1.1e+02 Score=29.55 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH--HHhcCCCCHHHHHHHhhHHH-HHHHHh
Q psy1409 188 TDTVLALLQTAASEIEEESEKVPE--EFLNGTIDVDKFLETFTPKR-ILMHLR 237 (320)
Q Consensus 188 p~~l~~~Lq~a~~eaEeeSE~lae--~FL~G~idv~~Fl~~f~~~R-~~~h~R 237 (320)
-...+..|..|...-.+-+..|.+ +|-++ +..-+..|+... ++|+.|
T Consensus 293 r~~~l~~L~~ay~~y~el~~~l~eG~~FY~d---L~~~~~~l~~~~~~f~~~R 342 (342)
T cd08915 293 REEALQDLEASYKKYLELKENLNEGSKFYND---LIEKVNRLLEECEDFVNAR 342 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHhcC
Confidence 355677778888777777777754 66663 566666666655 666655
No 107
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=69.03 E-value=1.5e+02 Score=30.84 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCHHHHH
Q psy1409 148 EEALLEKKSQLLD---LNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFL 224 (320)
Q Consensus 148 ep~Leelr~ql~~---~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~FL~G~idv~~Fl 224 (320)
+..++.++.++.. ..+++..+..++.++-+.++.+--. ...|...+...+-+...+++. |+.-+
T Consensus 350 ~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~------~~~L~k~V~~~~leaq~~~~s-------lek~~ 416 (622)
T COG5185 350 QSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQ------SDKLTKSVKSRKLEAQGIFKS-------LEKTL 416 (622)
T ss_pred HhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcch------HHHHHHHHHhHHHHHHHHHHH-------HHHHH
Confidence 3344444444433 2445555556666666666655222 345666666666666666665 44556
Q ss_pred HHhhHHHH
Q psy1409 225 ETFTPKRI 232 (320)
Q Consensus 225 ~~f~~~R~ 232 (320)
.+|...|.
T Consensus 417 ~~~~sl~~ 424 (622)
T COG5185 417 RQYDSLIQ 424 (622)
T ss_pred HHHHHHHH
Confidence 66666553
No 108
>KOG0971|consensus
Probab=68.87 E-value=2e+02 Score=32.30 Aligned_cols=26 Identities=8% Similarity=0.282 Sum_probs=18.3
Q ss_pred HhHHHHHHhcCCCCHHHHHHHhhHHH
Q psy1409 206 SEKVPEEFLNGTIDVDKFLETFTPKR 231 (320)
Q Consensus 206 SE~lae~FL~G~idv~~Fl~~f~~~R 231 (320)
.|+++++.-+.++.+++=|+...+..
T Consensus 446 AE~MV~qLtdknlnlEekVklLeetv 471 (1243)
T KOG0971|consen 446 AEEMVEQLTDKNLNLEEKVKLLEETV 471 (1243)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHH
Confidence 56677776677777777777666655
No 109
>KOG0161|consensus
Probab=68.74 E-value=2.8e+02 Score=33.81 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=20.7
Q ss_pred hhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHH
Q psy1409 123 TTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQL 158 (320)
Q Consensus 123 ~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql 158 (320)
.+++.....+.-..+.++++.....+..|+++...+
T Consensus 994 ~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~l 1029 (1930)
T KOG0161|consen 994 IRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTL 1029 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555566666666666666666555444
No 110
>KOG2893|consensus
Probab=68.46 E-value=22 Score=33.54 Aligned_cols=30 Identities=20% Similarity=0.151 Sum_probs=13.8
Q ss_pred HhHHHHHHHHHHHhc-cCCCCCCCCCCCCCC
Q psy1409 236 LRRIKADKMAEMLTK-RNSFGSPTHNGVGGH 265 (320)
Q Consensus 236 ~Rk~K~e~l~~~~~~-~~~~~~~~~~~~~~~ 265 (320)
.|++-.|+-++--.+ -..+..+++.+-..|
T Consensus 90 ~r~~~de~~~ekr~~~d~~~~~~~~~p~~~~ 120 (341)
T KOG2893|consen 90 YRGAADEEPDEKRSRMDNGPPMPTPMPFPQH 120 (341)
T ss_pred hhhhhhcCchhhhhcccCCCCCCCCCCCccc
Confidence 344555555552222 344555555543334
No 111
>KOG0612|consensus
Probab=68.44 E-value=2.3e+02 Score=32.75 Aligned_cols=59 Identities=19% Similarity=0.288 Sum_probs=26.1
Q ss_pred hhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 123 TTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKS 181 (320)
Q Consensus 123 ~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~ 181 (320)
+.++..-++++..+-..+.+.|-.....++..+.+.....+....++..+..++..+.+
T Consensus 583 ~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~ 641 (1317)
T KOG0612|consen 583 NRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKA 641 (1317)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 33444444444444444444444444444444444444444444444444444444333
No 112
>KOG4403|consensus
Probab=68.30 E-value=48 Score=33.88 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=48.8
Q ss_pred hhhhHHHHHHHHHhhHHHHHHhhhh------hHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Q psy1409 123 TTESNEQKEMLIASNKSLAEYNLSQ------EEALLEKKSQLLD--LNEQLTQLSKSVESKVELIKSHKNNVSTDTVLAL 194 (320)
Q Consensus 123 ~k~l~~~~e~ll~~N~~LAe~NL~~------ep~Leelr~ql~~--~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~ 194 (320)
..+++...+....+|+..|-.-+.. .++|.++|.-+.. ...++..+....++.+.++..-+.-+.|.+|..+
T Consensus 261 l~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~kAEkele~nS~wsaP~aLQ~w 340 (575)
T KOG4403|consen 261 LEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALEKAEKELEANSSWSAPLALQKW 340 (575)
T ss_pred HHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHH
Confidence 3445555666666666555333333 3445566554432 2357888888888888899888877889999988
Q ss_pred HHH
Q psy1409 195 LQT 197 (320)
Q Consensus 195 Lq~ 197 (320)
||-
T Consensus 341 Lq~ 343 (575)
T KOG4403|consen 341 LQL 343 (575)
T ss_pred HHH
Confidence 873
No 113
>KOG1899|consensus
Probab=67.92 E-value=1.8e+02 Score=31.34 Aligned_cols=16 Identities=31% Similarity=0.758 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCCCCCC
Q psy1409 304 PYPQLPQMPTPSYPFY 319 (320)
Q Consensus 304 ~yp~~~~~~~~~~~~~ 319 (320)
||++.||.|..-+||.
T Consensus 396 pf~~lpp~~~~d~pfl 411 (861)
T KOG1899|consen 396 PFSPLPPAARQDAPFL 411 (861)
T ss_pred cCCCCCCCccccchhh
Confidence 6777777766666663
No 114
>KOG4274|consensus
Probab=67.87 E-value=25 Score=37.08 Aligned_cols=81 Identities=23% Similarity=0.333 Sum_probs=41.7
Q ss_pred CCHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCC--C--CCCCCCC
Q psy1409 218 IDVDKFLETFTPKRILMHLRRIKADKMAEMLTKRNSFGSPTHNGVGGHNGGSSSFGGMYPPVP--VPP--M--GPGYPVS 291 (320)
Q Consensus 218 idv~~Fl~~f~~~R~~~h~Rk~K~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~--~--~~pyp~~ 291 (320)
.+-|+||... .|-+.|.|.+-..+-..-..+....-.|++++|++-. .++.-||..++ .+. + +.--|++
T Consensus 46 ~tkDEYl~lv--Akli~h~~d~s~~ksq~sv~qp~q~~~pp~n~pagG~---~g~~~pPrnp~qsla~~g~~~~~~~Pm~ 120 (742)
T KOG4274|consen 46 KTKDEYLSLV--AKLIIHFRDISNKKSQASVSQPMQALQPPTNGPAGGA---AGIGMPPRNPGQSLAGMGSSGAMGQPMS 120 (742)
T ss_pred hhHHHHHHHH--HHHHHHHHhhhhhhhhhhhhcHHhccCCCCCCCCCCC---CccCCCCCCccccccccccCCCCCCCCC
Confidence 3556666543 3467888888444444444444444455556555432 33443332222 111 1 3455667
Q ss_pred CCCCCCCCCCCC
Q psy1409 292 GGGMPLPHIQMT 303 (320)
Q Consensus 292 ~~~mp~p~~~~~ 303 (320)
+.|.|.||..++
T Consensus 121 ~gG~P~Pg~sgt 132 (742)
T KOG4274|consen 121 LGGQPPPGTSGT 132 (742)
T ss_pred CCCCCCCCCCcc
Confidence 778888865443
No 115
>KOG4673|consensus
Probab=67.85 E-value=1.9e+02 Score=31.54 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q psy1409 41 SNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLD 75 (320)
Q Consensus 41 ~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~ 75 (320)
.+..+.-|+++-+.|.++-|.....|.-||++..+
T Consensus 451 kdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke 485 (961)
T KOG4673|consen 451 KDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKE 485 (961)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Confidence 33344444555555555555555555555555433
No 116
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=67.72 E-value=81 Score=27.25 Aligned_cols=81 Identities=23% Similarity=0.228 Sum_probs=49.0
Q ss_pred HHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 14 SELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVEL 93 (320)
Q Consensus 14 eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~ 93 (320)
++|++.-...|.|..=|.+|.. .+..+...++.+...++.-=+..-.++..|..+...+.....+|..+...-+.+.+.
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEr-eLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~ 88 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLER-ELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKE 88 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777742 456666666666666666555555566666665555555555555555544444444
Q ss_pred HH
Q psy1409 94 IK 95 (320)
Q Consensus 94 ~~ 95 (320)
.+
T Consensus 89 lq 90 (140)
T PF10473_consen 89 LQ 90 (140)
T ss_pred HH
Confidence 33
No 117
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=67.21 E-value=70 Score=26.47 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 39 TESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIK 95 (320)
Q Consensus 39 k~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~ 95 (320)
.++..+++.|-+.+.+|=.+|.+...++.+++.+|.+....+..-+....++..++-
T Consensus 33 ~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~ 89 (107)
T PF09304_consen 33 GELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLL 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888888888888888888888877777766665555555543
No 118
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=66.93 E-value=1.2e+02 Score=28.77 Aligned_cols=51 Identities=18% Similarity=0.090 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 39 TESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVES 89 (320)
Q Consensus 39 k~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~ 89 (320)
..+..+.+++....+.....+-..+..|..+|..+...+.....|..++..
T Consensus 78 ~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~ 128 (312)
T PF00038_consen 78 DNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQS 128 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHH
Confidence 334445555555555556666666666666666665544443333333333
No 119
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=66.48 E-value=96 Score=27.65 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1409 161 LNEQLTQLSKSVESKVELIKSH 182 (320)
Q Consensus 161 ~y~el~~L~~~~~~k~~kl~~~ 182 (320)
.+..+..|......+..+...+
T Consensus 27 ~~~~I~~L~~e~~~ld~~i~~~ 48 (188)
T PF10018_consen 27 NQARIQQLRAEIEELDEQIRDI 48 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544443
No 120
>PF14992 TMCO5: TMCO5 family
Probab=66.37 E-value=95 Score=29.92 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=19.9
Q ss_pred hhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 19 LVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLA 56 (320)
Q Consensus 19 Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LA 56 (320)
++++.|..+.|+.+-. +-++++....++|=.+|+.+.
T Consensus 47 ~~~~~e~e~~~~~~~e-~~l~~le~e~~~LE~~ne~l~ 83 (280)
T PF14992_consen 47 IADRSEEEDIISEERE-TDLQELELETAKLEKENEHLS 83 (280)
T ss_pred ccCchhHHhhhhhchH-HHHHHHHhhhHHHhhhhHhhh
Confidence 4555555555554432 235555556666666666553
No 121
>PRK03918 chromosome segregation protein; Provisional
Probab=65.87 E-value=2.1e+02 Score=31.23 Aligned_cols=11 Identities=0% Similarity=0.169 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q psy1409 85 KSVESKVELIK 95 (320)
Q Consensus 85 ~~~~~~~~~~~ 95 (320)
.+.+++.+++.
T Consensus 570 ~~~~~~~~~l~ 580 (880)
T PRK03918 570 EELAELLKELE 580 (880)
T ss_pred HHHHHHHHHHh
Confidence 33333333333
No 122
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=65.71 E-value=2.1e+02 Score=31.25 Aligned_cols=150 Identities=18% Similarity=0.117 Sum_probs=86.0
Q ss_pred cCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hh
Q psy1409 21 NDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSH-KN 99 (320)
Q Consensus 21 ~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~-~~ 99 (320)
+-+++|..-|..|.- .++.+....+...++|..|...|....-..+.+-.+......++++++.+=..+.+-+-++ -+
T Consensus 27 ~~E~~~~~~i~~l~~-elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeE 105 (717)
T PF09730_consen 27 SKEAYLQQRILELEN-ELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEE 105 (717)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 345566666777743 4788888999999999999988888777777777777777777777766555554444443 12
Q ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHH---HHHHHH-HHHHHHHHHHHHHHHH
Q psy1409 100 NVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLE---KKSQLL-DLNEQLTQLSKSVESK 175 (320)
Q Consensus 100 ~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Lee---lr~ql~-~~y~el~~L~~~~~~k 175 (320)
++|.+-....|+.. +.+-|.+-.+++.|.+.+--....+++ +|.--. +.=+.+..|+.+++.|
T Consensus 106 NislQKqvs~Lk~s-------------QvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk 172 (717)
T PF09730_consen 106 NISLQKQVSVLKQS-------------QVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQK 172 (717)
T ss_pred HHHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333 233344444444444444333333332 221111 1223456667777766
Q ss_pred HHHHHHHhh
Q psy1409 176 VELIKSHKN 184 (320)
Q Consensus 176 ~~kl~~~~~ 184 (320)
..-.++++.
T Consensus 173 ~~LrkEL~~ 181 (717)
T PF09730_consen 173 NALRKELDQ 181 (717)
T ss_pred HHHHHHHHH
Confidence 655555544
No 123
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=64.72 E-value=61 Score=24.76 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=39.2
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 29 FTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVEL 93 (320)
Q Consensus 29 f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~ 93 (320)
.|..|. .+|+..-.....|-..|+.|-+.|-+....-..|+.+......+.....++.+.+..+
T Consensus 5 ~l~~LE-~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 5 LLEQLE-EKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344453 3577777777778888888888887777666666555555555544444444444333
No 124
>KOG4302|consensus
Probab=64.36 E-value=2.1e+02 Score=30.88 Aligned_cols=97 Identities=19% Similarity=0.184 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHH------HHHHHHHHHHHhhhhhhhhHHHHHHHHHhh
Q psy1409 64 EALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVL------ALLQTAASEIEEESETTESNEQKEMLIASN 137 (320)
Q Consensus 64 p~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll------~lLq~a~~~~eeesE~k~l~~~~e~ll~~N 137 (320)
-.|+++|.+|.+...+...-.+.+..+....+.+++-++.+..- ..|-+.. . ..|
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~-------~------------~~~ 220 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHD-------G------------EQS 220 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhcc-------C------------ccc
Confidence 57888888888887777777777777777777665544433221 1111110 0 012
Q ss_pred HHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 138 KSLAEYNLSQ-EEALLEKKSQLLDLNEQLTQLSKSVESKVELI 179 (320)
Q Consensus 138 ~~LAe~NL~~-ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl 179 (320)
+.+...++++ ...+..|+.+..++.+.++.|..+...+|..+
T Consensus 221 ~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l 263 (660)
T KOG4302|consen 221 RSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLL 263 (660)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344445543 33344555555555566666666666665544
No 125
>KOG4672|consensus
Probab=64.28 E-value=26 Score=35.40 Aligned_cols=100 Identities=10% Similarity=0.075 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHH
Q psy1409 80 LTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLL 159 (320)
Q Consensus 80 l~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~ 159 (320)
.++++..-.+.++-.........++.+...+..-+ +.+=..-.++.....|.+|..-+.--+...++--+|-+. ..-
T Consensus 26 KkElKrNKK~Rq~VR~a~lk~KDp~qi~~~m~kld-em~~~p~q~~~~~lnEkvLkdkrKK~rEtfer~~rlye~--~~p 102 (487)
T KOG4672|consen 26 KKELKRNKKDRQKVRAAVLKYKDPDQITSKMEKLD-EMEYNPFQIDVLRLNEKVLKDKRKKRRETFERGKRLYEA--TEP 102 (487)
T ss_pred HHHhhhhHHHHHHHHHhhhccCCHHHHHHHHHhhc-ccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcc--cCh
Confidence 34444444445555556667778888876554432 111111112333444555544443333333332222221 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 160 DLNEQLTQLSKSVESKVELIKSH 182 (320)
Q Consensus 160 ~~y~el~~L~~~~~~k~~kl~~~ 182 (320)
..|.+|+.+..+|+.|.-+....
T Consensus 103 ~~~~~L~r~eveye~kr~~~sqY 125 (487)
T KOG4672|consen 103 VMFSHLQRREVEYEDKRPEDSQY 125 (487)
T ss_pred HHHHHHHHHhhhhhhhchhhhhh
Confidence 46778888888888887666543
No 126
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=64.17 E-value=65 Score=33.28 Aligned_cols=13 Identities=0% Similarity=-0.118 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q psy1409 170 KSVESKVELIKSH 182 (320)
Q Consensus 170 ~~~~~k~~kl~~~ 182 (320)
....+++++++.+
T Consensus 76 ~kasELEKqLaaL 88 (475)
T PRK13729 76 VTAAQMQKQYEEI 88 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 127
>KOG0976|consensus
Probab=63.93 E-value=2.4e+02 Score=31.38 Aligned_cols=20 Identities=40% Similarity=0.571 Sum_probs=9.3
Q ss_pred HHHHHHHhhHHH--HHHHHhHH
Q psy1409 220 VDKFLETFTPKR--ILMHLRRI 239 (320)
Q Consensus 220 v~~Fl~~f~~~R--~~~h~Rk~ 239 (320)
+++-+...-.+| .+...|++
T Consensus 349 fddk~~eLEKkrd~al~dvr~i 370 (1265)
T KOG0976|consen 349 FDDKLNELEKKRDMALMDVRSI 370 (1265)
T ss_pred hhHHHHHHHHHHHHHHHhHHHH
Confidence 344445544555 34444444
No 128
>KOG4005|consensus
Probab=63.82 E-value=74 Score=30.09 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=24.2
Q ss_pred hhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHH
Q psy1409 123 TTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLD 160 (320)
Q Consensus 123 ~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~ 160 (320)
.+.|+.+-+.|.+.|++|--.|-+....|+.++.+|.+
T Consensus 106 n~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~ 143 (292)
T KOG4005|consen 106 NEILQNENDSLRAINESLLAKNHELDSELELLRQELAE 143 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 34566666666666666666666666667766655543
No 129
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=63.32 E-value=1.1e+02 Score=27.02 Aligned_cols=61 Identities=21% Similarity=0.265 Sum_probs=29.6
Q ss_pred hhhhhhHHHHHHHHHhhHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1409 121 SETTESNEQKEMLIASNKSLAEYNL---SQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKN 184 (320)
Q Consensus 121 sE~k~l~~~~e~ll~~N~~LAe~NL---~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~ 184 (320)
.+.+++....+.|-..|+.|-...- ..-..+++...++ ..++..+...+.+..+.+.+..+
T Consensus 89 ~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l---~~e~~~l~er~~e~l~~~~e~ve 152 (158)
T PF09744_consen 89 QERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAEL---KKEYNRLHERERELLRKLKEHVE 152 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777777776663222 2222333333222 22344444555555555555433
No 130
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=63.00 E-value=2.4e+02 Score=31.06 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1409 42 NEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKN 99 (320)
Q Consensus 42 ~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~ 99 (320)
..+...+-+..+.+.+.+...+.+|+-+|..|..+-.+...|...++.+..++++...
T Consensus 300 ~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~ 357 (775)
T PF10174_consen 300 KSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNS 357 (775)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3355666677777777888888888888888888877777777777777777776544
No 131
>KOG0976|consensus
Probab=62.99 E-value=2.5e+02 Score=31.25 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 149 EALLEKKSQLLDLNEQLTQLSKSVESKVELIKSH 182 (320)
Q Consensus 149 p~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~ 182 (320)
..|.++..++..+..+...+......|.+++++-
T Consensus 176 ~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~ 209 (1265)
T KOG0976|consen 176 EELNEFNMEFQTKLAEANREKKALEEKLEKFKED 209 (1265)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555543
No 132
>KOG1830|consensus
Probab=62.86 E-value=27 Score=35.47 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=8.4
Q ss_pred HHhcCCCCHHHHHHHhhH
Q psy1409 212 EFLNGTIDVDKFLETFTP 229 (320)
Q Consensus 212 ~FL~G~idv~~Fl~~f~~ 229 (320)
.--.|...|-+|-..|+.
T Consensus 222 s~~~g~~~v~~~~p~~~~ 239 (518)
T KOG1830|consen 222 SVGNGPNSVFSTRPEYQS 239 (518)
T ss_pred hcccCCcccccCCccccc
Confidence 334455555555444443
No 133
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=62.57 E-value=1.1e+02 Score=26.88 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 65 ALLEKKSQLLDLNEQLTQLSKSVESKVELIK 95 (320)
Q Consensus 65 ~L~elr~~l~~~~~el~~l~~~~~~~~~~~~ 95 (320)
++.+.+..+...-.++.++.+...++...+.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELE 112 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 134
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=62.28 E-value=34 Score=34.15 Aligned_cols=82 Identities=21% Similarity=0.271 Sum_probs=49.2
Q ss_pred ccCCHHHHHhhhcCHHHHHHHHHh-ccHHHHHH----HHH---HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Q psy1409 9 EHLDISELKELVNDEETFNNFTKE-ATATLTTE----SNE---QKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQL 80 (320)
Q Consensus 9 ~~lS~eEL~~Ll~d~d~l~~f~~~-l~~~~vk~----~~~---~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el 80 (320)
.++++|||++.|.+.|--.+.|.. +. .++. +.. +-=.+++.++++ .|-+.+.+.-..|++|.+.|..+
T Consensus 6 ~~~~LeeLe~kLa~~d~~Kd~V~~~I~--ea~~sILPlRL~FNeFi~tma~Ie~~--~~~s~qeKFl~IR~KlleL~~~l 81 (379)
T PF11593_consen 6 PNLKLEELEEKLASNDNSKDSVMDKIS--EAQDSILPLRLQFNEFIQTMANIEEM--NNKSPQEKFLLIRSKLLELYNKL 81 (379)
T ss_pred CCCcHHHHHHHHhcCCchHHHHHHHHH--HHHhccccHHHHHHHHHHHHHHhhcc--cccCHHHHHHHHHHHHHHHHHHH
Confidence 368999999977665543333222 11 1111 111 222333444333 45667888888999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1409 81 TQLSKSVESKVELI 94 (320)
Q Consensus 81 ~~l~~~~~~~~~~~ 94 (320)
++|-..|..|+=..
T Consensus 82 Q~lS~df~~LqPLF 95 (379)
T PF11593_consen 82 QELSSDFQKLQPLF 95 (379)
T ss_pred HHHHHHHHHhchHH
Confidence 98887777655433
No 135
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=62.17 E-value=2e+02 Score=30.87 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=23.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1409 62 QEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSH 97 (320)
Q Consensus 62 ~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~ 97 (320)
...-|++.++.+...+.+...+.++-..+..++..+
T Consensus 302 v~~Llqe~~a~v~q~~~e~~~l~~eaq~l~~~L~~~ 337 (632)
T PF14817_consen 302 VHQLLQEQWAHVQQFLAEEDALNKEAQALSQRLQRL 337 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577777777777777777766655555555443
No 136
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=59.89 E-value=62 Score=24.17 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhHHHHHHhcCCCCHHHHHHHhhHHH
Q psy1409 197 TAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKR 231 (320)
Q Consensus 197 ~a~~eaEeeSE~lae~FL~G~idv~~Fl~~f~~~R 231 (320)
+.-...|+--..|...|-.|.|+++.||+.-+..-
T Consensus 19 Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 19 AEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLA 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34445566667778899999999999999887754
No 137
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=59.86 E-value=1.7e+02 Score=28.37 Aligned_cols=18 Identities=33% Similarity=0.606 Sum_probs=10.6
Q ss_pred HHHHHHHHhHHHHHHhcC
Q psy1409 199 ASEIEEESEKVPEEFLNG 216 (320)
Q Consensus 199 ~~eaEeeSE~lae~FL~G 216 (320)
+.+.-.+++.+++.|++-
T Consensus 202 ~De~Rkeade~he~~ve~ 219 (294)
T COG1340 202 ADELRKEADELHEEFVEL 219 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444677777777654
No 138
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=59.29 E-value=18 Score=36.90 Aligned_cols=52 Identities=21% Similarity=0.402 Sum_probs=39.8
Q ss_pred hcCCHHHHHHHH----------HHHHHHHH-HHHhHHHHHHhcCCCCHHHHHHHhhHHHHHHH
Q psy1409 184 NNVSTDTVLALL----------QTAASEIE-EESEKVPEEFLNGTIDVDKFLETFTPKRILMH 235 (320)
Q Consensus 184 ~~~sp~~l~~~L----------q~a~~eaE-eeSE~lae~FL~G~idv~~Fl~~f~~~R~~~h 235 (320)
+.|+|+.+..|+ ..+....| ++.+.+++++..|+.+++||++++...|+.--
T Consensus 282 E~F~P~R~asRILGMGDv~sLvEk~~~~~d~e~a~~~~~kl~~g~FtL~Df~~Ql~~m~kmGp 344 (451)
T COG0541 282 EPFHPDRFASRILGMGDVLSLIEKAEEVVDEEEAEKLAEKLKKGKFTLEDFLEQLEQMKKMGP 344 (451)
T ss_pred CCcChHHHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC
Confidence 778898776543 33333333 67899999999999999999999999886543
No 139
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=59.10 E-value=34 Score=30.09 Aligned_cols=12 Identities=58% Similarity=1.148 Sum_probs=5.9
Q ss_pred CCCCCCCCCCCC
Q psy1409 304 PYPQLPQMPTPS 315 (320)
Q Consensus 304 ~yp~~~~~~~~~ 315 (320)
||+.++.+|+.|
T Consensus 168 p~~~~~~~pp~y 179 (179)
T PF13908_consen 168 PYPAQPQGPPPY 179 (179)
T ss_pred CCCCCCCCCCCC
Confidence 444445555544
No 140
>PRK10884 SH3 domain-containing protein; Provisional
Probab=58.90 E-value=1.5e+02 Score=27.21 Aligned_cols=8 Identities=38% Similarity=0.480 Sum_probs=3.2
Q ss_pred HHHhhHHH
Q psy1409 133 LIASNKSL 140 (320)
Q Consensus 133 ll~~N~~L 140 (320)
|..+|..|
T Consensus 137 L~~~n~~L 144 (206)
T PRK10884 137 LKEENQKL 144 (206)
T ss_pred HHHHHHHH
Confidence 33344444
No 141
>KOG4674|consensus
Probab=58.73 E-value=4e+02 Score=32.24 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHhhHHHHHHhhh
Q psy1409 124 TESNEQKEMLIASNKSLAEYNLS 146 (320)
Q Consensus 124 k~l~~~~e~ll~~N~~LAe~NL~ 146 (320)
..+-.+++.+...|..|-+.-..
T Consensus 181 ~rl~QEksll~s~~~wL~~eL~~ 203 (1822)
T KOG4674|consen 181 ERLEQEKSLLESENKWLSRELSK 203 (1822)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 34555555555555555544333
No 142
>KOG0971|consensus
Probab=58.72 E-value=3.1e+02 Score=30.94 Aligned_cols=178 Identities=18% Similarity=0.202 Sum_probs=90.4
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH---HHHhhhcCC----
Q psy1409 39 TESNEQK-EMLIASNKSLAEYNLSQEEALLEKKSQLLDL--------NEQLTQLSKSVESKVEL---IKSHKNNVS---- 102 (320)
Q Consensus 39 k~~~~~r-e~ll~~N~~LAe~NL~~ep~L~elr~~l~~~--------~~el~~l~~~~~~~~~~---~~~~~~~~S---- 102 (320)
|++..+| |.|..+.+.+-++|-+++-.|+-||+++.++ .-++++|......+..- +++++..-.
T Consensus 320 KEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~q 399 (1243)
T KOG0971|consen 320 KEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQ 399 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 5665555 4455677778889999999999999998764 22333343332222221 121111100
Q ss_pred ---------------HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHh---hHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy1409 103 ---------------TDTVLALLQTAASEIEEESETTESNEQKEMLIAS---NKSLAEYNLSQEEALLEKKSQLLDLNEQ 164 (320)
Q Consensus 103 ---------------p~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~---N~~LAe~NL~~ep~Leelr~ql~~~y~e 164 (320)
.....++|+..... -++-+-+++...+..|.. ...||+.|+..+.++..+...+ ...+.
T Consensus 400 K~~kelE~k~sE~~eL~r~kE~Lsr~~d~--aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv-~dlEa 476 (1243)
T KOG0971|consen 400 KLQKELEKKNSELEELRRQKERLSRELDQ--AESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETV-GDLEA 476 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHH-HHHHH
Confidence 00111111111111 223333444444444332 3468899999998888877554 33555
Q ss_pred HHHHHHHHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCHHHHHHHhhH
Q psy1409 165 LTQLSKSVESKVELIKS-HKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTP 229 (320)
Q Consensus 165 l~~L~~~~~~k~~kl~~-~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~FL~G~idv~~Fl~~f~~ 229 (320)
++.+.++..+-.+++.- +.. =+..+.-+..++...-++--+... |.++-+.+|++
T Consensus 477 lee~~EQL~Esn~ele~DLre------Eld~~~g~~kel~~r~~aaqet~y----DrdqTI~KfRe 532 (1243)
T KOG0971|consen 477 LEEMNEQLQESNRELELDLRE------ELDMAKGARKELQKRVEAAQETVY----DRDQTIKKFRE 532 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHhhHHHHHHHHHHHHHHHHH----hHHHHHHHHHH
Confidence 55555555554444432 222 133444444555444444333322 35666888877
No 143
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=58.69 E-value=85 Score=32.98 Aligned_cols=7 Identities=0% Similarity=-0.111 Sum_probs=2.9
Q ss_pred hcCCHHH
Q psy1409 184 NNVSTDT 190 (320)
Q Consensus 184 ~~~sp~~ 190 (320)
..|-|=+
T Consensus 120 ~~F~P~s 126 (582)
T PF03276_consen 120 LSFNPVS 126 (582)
T ss_pred cccCCcc
Confidence 3444433
No 144
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=58.33 E-value=3.3 Score=44.51 Aligned_cols=65 Identities=14% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH-----HHHHHHHHHHHHHHHHHhHHHHHH
Q psy1409 149 EALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTD-----TVLALLQTAASEIEEESEKVPEEF 213 (320)
Q Consensus 149 p~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~-----~l~~~Lq~a~~eaEeeSE~lae~F 213 (320)
..+.++...+..+-.+++.....|.....+.+.+.....|. .=...|+....+-+...+.+...|
T Consensus 576 ~ki~~Le~~L~~k~~e~~~~eer~k~~lekak~vi~~Ld~k~~~~~~e~~~L~~ql~e~~~~i~~lE~~~ 645 (713)
T PF05622_consen 576 QKIEELEEALQKKEEEMRAMEERYKKYLEKAKEVIKTLDPKQNPSSPEIQALKKQLQEKDRRIESLEKEL 645 (713)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHhhccChhccCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555444555555554444333333322222222 112344455555555555555554
No 145
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=58.33 E-value=1.1e+02 Score=25.66 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1409 65 ALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHK 98 (320)
Q Consensus 65 ~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~ 98 (320)
-++.+.++|..+=.|+..++..+..+....+.+.
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~ 50 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELR 50 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666777777777666666666543
No 146
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=58.04 E-value=99 Score=32.20 Aligned_cols=81 Identities=20% Similarity=0.205 Sum_probs=39.5
Q ss_pred cHHHHhccCCHHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Q psy1409 3 NLESLLEHLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQ 82 (320)
Q Consensus 3 ~~~~~L~~lS~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~ 82 (320)
.+++.|.+..+..|=.|...+-+++.++.+|- +....-+.+...-..+.++.-+....+.+++-+|.......++
T Consensus 411 ~ii~~Lt~~~~~~L~~Ik~SprYvdrl~~~L~-----qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~ 485 (507)
T PF05600_consen 411 EIISQLTNPRTQHLFMIKSSPRYVDRLVESLQ-----QKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRE 485 (507)
T ss_pred HHHHHhcCHHHHHHHHHhcCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34555555556666666667767666666652 2222333334444444444444444444444444444444444
Q ss_pred HHHHHH
Q psy1409 83 LSKSVE 88 (320)
Q Consensus 83 l~~~~~ 88 (320)
|+..++
T Consensus 486 Lq~~iE 491 (507)
T PF05600_consen 486 LQKQIE 491 (507)
T ss_pred HHHHHH
Confidence 444333
No 147
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=57.86 E-value=1.9e+02 Score=28.09 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=23.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1409 144 NLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKN 184 (320)
Q Consensus 144 NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~ 184 (320)
...-..+|..+|.+|...-.++...+.....++.++..+..
T Consensus 204 ~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~ 244 (325)
T PF08317_consen 204 ESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEE 244 (325)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666555555555555555433
No 148
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=56.28 E-value=1e+02 Score=27.32 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 48 LIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVEL 93 (320)
Q Consensus 48 ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~ 93 (320)
+..+|..|-+.+-.++.+++.|..++.....++..+.+.|..+...
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~I 147 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDI 147 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443444444444444444444444444444444433
No 149
>KOG4672|consensus
Probab=55.41 E-value=31 Score=34.92 Aligned_cols=11 Identities=18% Similarity=0.208 Sum_probs=5.4
Q ss_pred CHHHHHHHhhH
Q psy1409 219 DVDKFLETFTP 229 (320)
Q Consensus 219 dv~~Fl~~f~~ 229 (320)
+-++|...|.+
T Consensus 287 ~eden~~~~~~ 297 (487)
T KOG4672|consen 287 PEDENASSFQN 297 (487)
T ss_pred hhhhccccccc
Confidence 34455555544
No 150
>KOG2893|consensus
Probab=55.13 E-value=41 Score=31.87 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1409 188 TDTVLALLQTAASEIEE 204 (320)
Q Consensus 188 p~~l~~~Lq~a~~eaEe 204 (320)
|.-.+.++|+-...+|.
T Consensus 48 pglsihcmqvhketid~ 64 (341)
T KOG2893|consen 48 PGLSIHCMQVHKETIDK 64 (341)
T ss_pred CCceeehhhhhhhhhhc
Confidence 34445566655444443
No 151
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=55.05 E-value=2.2e+02 Score=27.98 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH--HHhcCCCCHHHHHHHhhHHH-HHHHHh
Q psy1409 189 DTVLALLQTAASEIEEESEKVPE--EFLNGTIDVDKFLETFTPKR-ILMHLR 237 (320)
Q Consensus 189 ~~l~~~Lq~a~~eaEeeSE~lae--~FL~G~idv~~Fl~~f~~~R-~~~h~R 237 (320)
+..+..|..|...-.+-+..|.+ +|-++ +...+..|+... ++++.|
T Consensus 305 e~~lq~L~~ay~~y~el~~nl~eG~kFY~d---L~~~~~~~~~~~~~fv~~R 353 (353)
T cd09236 305 ERALQSLDLAYFKYKEIVSNLDEGRKFYND---LAKILSQFRDACKAWVYER 353 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCC
Confidence 45667777777777777777644 67663 566677776665 555544
No 152
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=54.33 E-value=1.3e+02 Score=25.13 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=12.4
Q ss_pred HHHHHHHhhHHHHHHHHhHHH
Q psy1409 220 VDKFLETFTPKRILMHLRRIK 240 (320)
Q Consensus 220 v~~Fl~~f~~~R~~~h~Rk~K 240 (320)
+...|..|...-..||....+
T Consensus 166 ~~~~L~~~~~~q~~~~~~~~~ 186 (194)
T cd07307 166 FLSLLLSFIEAQSEFFKEVLK 186 (194)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 556666666666556654443
No 153
>KOG0917|consensus
Probab=54.31 E-value=2.1e+02 Score=27.69 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhccCCCC
Q psy1409 239 IKADKMAEMLTKRNSFG 255 (320)
Q Consensus 239 ~K~e~l~~~~~~~~~~~ 255 (320)
+|.--....|++++.+.
T Consensus 141 WKat~I~~clk~G~~p~ 157 (338)
T KOG0917|consen 141 WKATYIHNCLKNGETPQ 157 (338)
T ss_pred HHHHHHHHHHhCCCCCC
Confidence 36667778888877654
No 154
>KOG4005|consensus
Probab=53.83 E-value=82 Score=29.79 Aligned_cols=79 Identities=24% Similarity=0.239 Sum_probs=48.3
Q ss_pred HHhccCCHHHH--HhhhcC-------HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q psy1409 6 SLLEHLDISEL--KELVND-------EETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDL 76 (320)
Q Consensus 6 ~~L~~lS~eEL--~~Ll~d-------~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~ 76 (320)
..|.+||.+|= ++=|.| -|.=.+-..+|. ++++++..+-+.|..+|.+|-+.|-.+=-+=-+++..|...
T Consensus 59 ~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme-~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~ 137 (292)
T KOG4005|consen 59 RRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEME-YEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELL 137 (292)
T ss_pred HhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45788888873 222222 222333444554 36777777777777777777777766555555666666666
Q ss_pred HHHHHHHHH
Q psy1409 77 NEQLTQLSK 85 (320)
Q Consensus 77 ~~el~~l~~ 85 (320)
.++|.+++.
T Consensus 138 ~~~l~~~~~ 146 (292)
T KOG4005|consen 138 RQELAELKQ 146 (292)
T ss_pred HHHHHhhHH
Confidence 666666653
No 155
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=53.63 E-value=1.6e+02 Score=25.99 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CHHHHHHHHHHH
Q psy1409 39 TESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNV---STDTVLALLQTA 113 (320)
Q Consensus 39 k~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~---Sp~~Ll~lLq~a 113 (320)
..+..-++.++.=-++.=...-..+-.|.++|.++..-..+.-.|...+..-..++-++|.+| |-+++..-...+
T Consensus 9 ~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A 86 (159)
T PF05384_consen 9 DTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEA 86 (159)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHH
Confidence 334445566655555555566777889999999999999999999999988889998888776 677777655544
No 156
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=53.06 E-value=1.7e+02 Score=26.04 Aligned_cols=79 Identities=18% Similarity=0.231 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHH
Q psy1409 72 QLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEAL 151 (320)
Q Consensus 72 ~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~L 151 (320)
-|...|++.=++........+ .....++.++++.-|+.-.... ...+.+..+.+.+...+..|...|-..+.++
T Consensus 54 ~VRkqY~~~i~~AKkqRk~~~---~~~~~ltl~~vI~fLq~l~~~~---~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~ 127 (161)
T TIGR02894 54 YVRKQYEEAIELAKKQRKELK---REAGSLTLQDVISFLQNLKTTN---PSDQALQKENERLKNQNESLQKRNEELEKEL 127 (161)
T ss_pred HHHHHHHHHHHHHHHHHhccc---cCcccCCHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556655554332222111 1136788999999887764221 2234444555555555555555555555555
Q ss_pred HHHHH
Q psy1409 152 LEKKS 156 (320)
Q Consensus 152 eelr~ 156 (320)
..+..
T Consensus 128 ~~L~~ 132 (161)
T TIGR02894 128 EKLRQ 132 (161)
T ss_pred HHHHH
Confidence 55443
No 157
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=52.57 E-value=1.1e+02 Score=29.82 Aligned_cols=83 Identities=18% Similarity=0.290 Sum_probs=45.1
Q ss_pred CCHHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH--HHhhccH---------HHHHHHHHHHHHHHHH
Q psy1409 11 LDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLA--EYNLSQE---------EALLEKKSQLLDLNEQ 79 (320)
Q Consensus 11 lS~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LA--e~NL~~e---------p~L~elr~~l~~~~~e 79 (320)
+|.++|+-||.|++.-+.|+..... .-.+-...++.|..-...++ ..++.-+ -..-++|.+|.+...+
T Consensus 2 ~s~~~l~~llt~~eaw~~~~~~~~l-~rde~d~l~~~L~~l~~~~~~~d~~~~~~~~~~~~~FL~~Fp~~k~~Le~~I~k 80 (313)
T PF05461_consen 2 VSREDLQLLLTEDEAWERFVAEAEL-SRDEADALREALKELTEDMDSEDKDRSQKDQQDRERFLKEFPQLKEELEEHIRK 80 (313)
T ss_pred CCHHHHHHHHhhHHHHHHHHHhccC-chhhHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6899999999999999999886431 01111122222211111111 1222211 1122456667777777
Q ss_pred HHHHHHHHHHHHHHH
Q psy1409 80 LTQLSKSVESKVELI 94 (320)
Q Consensus 80 l~~l~~~~~~~~~~~ 94 (320)
|.++....+...+.-
T Consensus 81 L~~lAd~idk~Hk~~ 95 (313)
T PF05461_consen 81 LRALADEIDKVHKDC 95 (313)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777777666655544
No 158
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=52.40 E-value=2.2e+02 Score=27.27 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Q psy1409 84 SKSVESKVELIKSHKNNVSTDTVLALLQTAASEI 117 (320)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~~ 117 (320)
....+-+..+...++..+..+++...|+.+...+
T Consensus 141 ~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~ 174 (267)
T PF10234_consen 141 GKEVELREERQRALARPLELNEIEKALKEAIKAV 174 (267)
T ss_pred hchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHH
Confidence 3345667777788888888888888888775443
No 159
>KOG0977|consensus
Probab=52.30 E-value=3.1e+02 Score=28.98 Aligned_cols=41 Identities=17% Similarity=0.345 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH---HhcCCCCHHHHHHHhhH
Q psy1409 189 DTVLALLQTAASEIEEESEKVPEE---FLNGTIDVDKFLETFTP 229 (320)
Q Consensus 189 ~~l~~~Lq~a~~eaEeeSE~lae~---FL~G~idv~~Fl~~f~~ 229 (320)
...++-...++.+.=++|..+... ++|-+++++.=+..|+.
T Consensus 341 e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRk 384 (546)
T KOG0977|consen 341 EQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRK 384 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHH
Confidence 334455555666666666666443 35556666655555544
No 160
>KOG4674|consensus
Probab=52.15 E-value=5.1e+02 Score=31.44 Aligned_cols=77 Identities=13% Similarity=0.060 Sum_probs=36.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhH
Q psy1409 62 QEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSH---KNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNK 138 (320)
Q Consensus 62 ~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~---~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~ 138 (320)
++-.|.+++.++.....++..|++..+.-.+|.+++ +...++.++..+......--++....+.+..+..+.+..++
T Consensus 1262 lq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1262 LQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666665544444444444 34455666665444332223333333333334443333333
No 161
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=52.11 E-value=2.4e+02 Score=27.58 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=13.5
Q ss_pred HHHHHHHhhHHHHHHHHhHHH
Q psy1409 220 VDKFLETFTPKRILMHLRRIK 240 (320)
Q Consensus 220 v~~Fl~~f~~~R~~~h~Rk~K 240 (320)
-..||+.+++.-.+|--|=+|
T Consensus 152 P~~~V~e~~dsA~Fy~NRVLk 172 (312)
T PF01213_consen 152 PAPYVKEMKDSAQFYTNRVLK 172 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHhHHHH
Confidence 456777777776666666444
No 162
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=52.09 E-value=2.4e+02 Score=27.61 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy1409 66 LLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVS 102 (320)
Q Consensus 66 L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~S 102 (320)
+...-..|.....++..++.+-..+.+.+++.+..-.
T Consensus 196 ~~~~i~~L~~ll~~l~~lk~eR~~~~~~Lk~k~~~DD 232 (356)
T cd09237 196 VLKQIKQLEELLEDLNLIKEERQRVLKDLKQKIHNDD 232 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3334455566677777777776666666666555543
No 163
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=51.95 E-value=2.2e+02 Score=27.20 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1409 62 QEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNN 100 (320)
Q Consensus 62 ~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~ 100 (320)
-.-.|.+.|..|...+++++.|++.++....-...+..+
T Consensus 181 Er~~L~~k~~~L~~Q~edAk~LKe~~drRe~~v~~iL~~ 219 (264)
T PF08687_consen 181 ERESLLEKRRLLQRQLEDAKELKENLDRRERVVSEILAR 219 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 455688889999999999999999999888877766544
No 164
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=51.64 E-value=38 Score=34.44 Aligned_cols=51 Identities=24% Similarity=0.437 Sum_probs=38.0
Q ss_pred hcCCHHHHHHHH---------HHHHHHH--HHHHhHHHHHHhcCCCCHHHHHHHhhHHHHHH
Q psy1409 184 NNVSTDTVLALL---------QTAASEI--EEESEKVPEEFLNGTIDVDKFLETFTPKRILM 234 (320)
Q Consensus 184 ~~~sp~~l~~~L---------q~a~~ea--EeeSE~lae~FL~G~idv~~Fl~~f~~~R~~~ 234 (320)
..|+|+.+..+| -..+.+. +++.+.++++...|..++.||+.+++..++.-
T Consensus 282 ~~f~p~~~~~~iLg~gD~~~l~e~~~~~~~~~~~~~~~~~~~~~~f~l~d~~~q~~~~~kmG 343 (428)
T TIGR00959 282 EPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAEKMKKGQFDLEDFLEQLRQIKKMG 343 (428)
T ss_pred ccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 678888887665 2222222 44578889999999999999999999877544
No 165
>KOG0946|consensus
Probab=51.62 E-value=3.8e+02 Score=29.82 Aligned_cols=56 Identities=11% Similarity=0.015 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1409 42 NEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSH 97 (320)
Q Consensus 42 ~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~ 97 (320)
...+-.+-.+.+++-+.+-+++-..+++..++.+...+-.+|++.++.+..++..+
T Consensus 663 K~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~ 718 (970)
T KOG0946|consen 663 KGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGII 718 (970)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33344444455555566777777778888888888888888888888888888743
No 166
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=51.51 E-value=3.5e+02 Score=29.29 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=10.2
Q ss_pred HHhhhhhhhhHHHHHHHHH
Q psy1409 117 IEEESETTESNEQKEMLIA 135 (320)
Q Consensus 117 ~eeesE~k~l~~~~e~ll~ 135 (320)
.+.-+.++.++..+..+.+
T Consensus 335 ~~~hP~v~~l~~~~~~L~~ 353 (726)
T PRK09841 335 KKDHPTYRALLEKRQTLEQ 353 (726)
T ss_pred cccCchHHHHHHHHHHHHH
Confidence 4445556666665555433
No 167
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=51.32 E-value=84 Score=24.77 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=14.0
Q ss_pred hhcCCHHHHHHHHHHHH
Q psy1409 98 KNNVSTDTVLALLQTAA 114 (320)
Q Consensus 98 ~~~~Sp~~Ll~lLq~a~ 114 (320)
+-.+||+.|.++|+...
T Consensus 45 ~~~mtp~eL~~~L~~~~ 61 (83)
T PF14193_consen 45 SMKMTPEELAAFLRAMK 61 (83)
T ss_pred HcCCCHHHHHHHHHHHH
Confidence 44789999999998764
No 168
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=51.26 E-value=2.4e+02 Score=27.47 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH--HHhcCCCCHHHHHHHhhHHH-HHHHHh
Q psy1409 190 TVLALLQTAASEIEEESEKVPE--EFLNGTIDVDKFLETFTPKR-ILMHLR 237 (320)
Q Consensus 190 ~l~~~Lq~a~~eaEeeSE~lae--~FL~G~idv~~Fl~~f~~~R-~~~h~R 237 (320)
..+..|..|...-.+-+..|.+ +|-++ +..-+..|+... ++++.|
T Consensus 292 ~~l~~L~~ay~~y~el~~~l~eG~kFY~d---L~~~~~~l~~~~~~fv~~R 339 (339)
T cd09238 292 SHATQIRAAVAKYRELREGMEEGLRFYSG---FQEAVRRLKQECEDFVMTR 339 (339)
T ss_pred HHHHHHHHHHHHHHHHHHchHHHHHHHHH---HHHHHHHHHHHHHHHHhcC
Confidence 3466777777777777766643 66653 566666666655 555554
No 169
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=51.23 E-value=31 Score=35.11 Aligned_cols=51 Identities=20% Similarity=0.295 Sum_probs=37.3
Q ss_pred hcCCHHHHHHHHH---------HHHHH--HHHHHhHHHHHHhcCCCCHHHHHHHhhHHHHHH
Q psy1409 184 NNVSTDTVLALLQ---------TAASE--IEEESEKVPEEFLNGTIDVDKFLETFTPKRILM 234 (320)
Q Consensus 184 ~~~sp~~l~~~Lq---------~a~~e--aEeeSE~lae~FL~G~idv~~Fl~~f~~~R~~~ 234 (320)
..|+|+.+..+|- ..+.+ -+++.+.+++++..|..+++||+.+++..++.-
T Consensus 275 e~f~~~~~~~~ilgmgd~~~l~e~~~~~~~~~~~~~~~~~~~~~~f~l~d~~~q~~~~~kmG 336 (437)
T PRK00771 275 ERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMMKGKFTLKDMYKQLEAMNKMG 336 (437)
T ss_pred CcCCHHHHHHHHhCCCChHHHHHHHHHhhhHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhcC
Confidence 5677777765431 12222 245678899999999999999999999988654
No 170
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=50.87 E-value=81 Score=34.00 Aligned_cols=120 Identities=20% Similarity=0.238 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhcCCHHHHH--HHHHHHH--HHHHhhhhhhhhHHHHHHHHHh
Q psy1409 63 EEALLEKKSQLLDLNEQLTQLSKSVESKVELIKS--HKNNVSTDTVL--ALLQTAA--SEIEEESETTESNEQKEMLIAS 136 (320)
Q Consensus 63 ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~--~~~~~Sp~~Ll--~lLq~a~--~~~eeesE~k~l~~~~e~ll~~ 136 (320)
..++..++.++...-.++..|......+..++.. +.+.+.+.... .+=...+ +..-..+....|+.+.+.|++.
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~ 581 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLAR 581 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777778888887777777765 33444433211 1111111 1222345566777777777777
Q ss_pred hHHHHHHhh------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 137 NKSLAEYNL------------SQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSH 182 (320)
Q Consensus 137 N~~LAe~NL------------~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~ 182 (320)
++.|-+.+- ..+-++.+++.++...-.....|+.-|..|.....++
T Consensus 582 l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~a 639 (722)
T PF05557_consen 582 LRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFREA 639 (722)
T ss_dssp HHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655432221 1233456666666666666666777777776666664
No 171
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=50.79 E-value=3.2e+02 Score=28.67 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=10.5
Q ss_pred HHHHHhhHHHHHHHHhHHHHHHHHHHH
Q psy1409 222 KFLETFTPKRILMHLRRIKADKMAEML 248 (320)
Q Consensus 222 ~Fl~~f~~~R~~~h~Rk~K~e~l~~~~ 248 (320)
.|.......|+--..=|.+..+|...+
T Consensus 397 ~~~~~l~~L~~dE~~Ar~~l~~~~~~l 423 (560)
T PF06160_consen 397 EINESLQSLRKDEKEAREKLQKLKQKL 423 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444433333333444444433
No 172
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=50.78 E-value=2.4e+02 Score=27.32 Aligned_cols=19 Identities=16% Similarity=0.039 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhhccH
Q psy1409 45 KEMLIASNKSLAEYNLSQE 63 (320)
Q Consensus 45 re~ll~~N~~LAe~NL~~e 63 (320)
..+++..++.+.+.....+
T Consensus 31 ~~ell~e~k~~~k~~~~~~ 49 (309)
T PF09728_consen 31 YAELLEEMKRLQKQLKKLQ 49 (309)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333
No 173
>PRK14127 cell division protein GpsB; Provisional
Probab=50.43 E-value=56 Score=27.05 Aligned_cols=45 Identities=16% Similarity=0.196 Sum_probs=28.3
Q ss_pred CHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy1409 22 DEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLL 74 (320)
Q Consensus 22 d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~ 74 (320)
|++..++|+..+ ..+.+.+..+|..|-++|-.++.+|.+++.++.
T Consensus 24 d~~EVD~FLd~V--------~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 24 DQDEVDKFLDDV--------IKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred CHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455566664442 345666777777777766666666666666555
No 174
>KOG4302|consensus
Probab=50.37 E-value=3.6e+02 Score=29.18 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 63 EEALLEKKSQLLDLNEQLTQLSKSVESKVELIK 95 (320)
Q Consensus 63 ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~ 95 (320)
.|.|+++|.+..++..++.++....+.++..+.
T Consensus 109 ~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~ 141 (660)
T KOG4302|consen 109 KPYLEGLRKQKDERRAEFKELYHQIEKLCEELG 141 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355555555555555555555555555554443
No 175
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=50.26 E-value=2.1e+02 Score=26.38 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=15.1
Q ss_pred HHHHHHHHhc-cCCCCCCCCCCCCCCCCC
Q psy1409 241 ADKMAEMLTK-RNSFGSPTHNGVGGHNGG 268 (320)
Q Consensus 241 ~e~l~~~~~~-~~~~~~~~~~~~~~~~~~ 268 (320)
.....+++.. ...++.|.++++++..++
T Consensus 128 ~~~f~elVkk~p~~~ss~~~sS~q~~~~~ 156 (205)
T PF12238_consen 128 FNTFEELVKKKPAQPSSPTPSSPQGTSTT 156 (205)
T ss_pred HHHHHHHhhhcccCCCCCCCCCCCCCCCC
Confidence 3445556665 445555665555555443
No 176
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=50.24 E-value=1.3e+02 Score=30.50 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy1409 71 SQLLDLNEQLTQLSKSVESKVELIKSHKNNV 101 (320)
Q Consensus 71 ~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~ 101 (320)
.++...+.+.+++..+.+.+..+.++++..+
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i 58 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERNALSKEI 58 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777776643
No 177
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=50.10 E-value=3.5e+02 Score=28.99 Aligned_cols=155 Identities=16% Similarity=0.152 Sum_probs=84.7
Q ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------hhcCCHHHHHHHHHHHHHHH-----
Q psy1409 56 AEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSH-------------KNNVSTDTVLALLQTAASEI----- 117 (320)
Q Consensus 56 Ae~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~-------------~~~~Sp~~Ll~lLq~a~~~~----- 117 (320)
+..|+.....=.+-|..|+.-|.-+...+..+....++..+. ...+|..+.+.....+...-
T Consensus 330 ~~r~~~~~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~~~~~g~~~d~~rika~VIrG~~l~eal~~~~e~~~p~e~~~~ 409 (652)
T COG2433 330 ALRTLKISVSDDHERDALAAAYKAYLAYKPKLEKVERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEEERPREKEGT 409 (652)
T ss_pred HHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHeecCCcHHHHHHHHHhhhcccccccc
Confidence 556666666667788888888777777777777666665443 45566666665555443200
Q ss_pred --HhhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Q psy1409 118 --EEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALL 195 (320)
Q Consensus 118 --eeesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~L 195 (320)
++..+......+...+-..-+.|-+.|-+++-.+++++..+...-.++..+....+.+..+-.++- ..+.-...|
T Consensus 410 ~~~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~---~~~~~I~~L 486 (652)
T COG2433 410 EEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIR---ARDRRIERL 486 (652)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH---HHHHHHHHH
Confidence 011112233334444444445555555555555555555554444444445444443333333321 123345666
Q ss_pred HHHHHHHHHHHhHHHHHH
Q psy1409 196 QTAASEIEEESEKVPEEF 213 (320)
Q Consensus 196 q~a~~eaEeeSE~lae~F 213 (320)
.....+....-|.|...|
T Consensus 487 ~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 487 EKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667777666666666655
No 178
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=49.54 E-value=2.6e+02 Score=27.25 Aligned_cols=72 Identities=18% Similarity=0.210 Sum_probs=32.5
Q ss_pred hhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-HHHHH-----HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 19 LVNDEETFNNFTKEATATLTTESNEQKEMLIASN-KSLAE-----YNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVE 92 (320)
Q Consensus 19 Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N-~~LAe-----~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~ 92 (320)
..++|-.|.+++...++ ++.+-...=.++.++ |-+|+ +-.. .++.++..|...++.++.=.+.......
T Consensus 94 ~~~nPpLF~EY~~a~~d--~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~k---llegLk~~L~~~~~~l~~D~~~L~~~~~ 168 (312)
T smart00787 94 LINNPPLFKEYFSASPD--VKLLMDKQFQLVKTFARLEAKKMWYEWRMK---LLEGLKEGLDENLEGLKEDYKLLMKELE 168 (312)
T ss_pred hhcCcHHHHHHHcCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777765432 333322222222222 22232 2222 2556666666555555544444443333
Q ss_pred HHH
Q psy1409 93 LIK 95 (320)
Q Consensus 93 ~~~ 95 (320)
..+
T Consensus 169 ~l~ 171 (312)
T smart00787 169 LLN 171 (312)
T ss_pred HHH
Confidence 333
No 179
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=48.81 E-value=87 Score=32.36 Aligned_cols=41 Identities=20% Similarity=0.151 Sum_probs=28.6
Q ss_pred hhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy1409 122 ETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLN 162 (320)
Q Consensus 122 E~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y 162 (320)
.++++..+.+.++.+|+.|.++|-.++.+-...-.++....
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av 107 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAV 107 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 46777888888888888888888776665555555554443
No 180
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=48.65 E-value=3.7e+02 Score=28.81 Aligned_cols=25 Identities=32% Similarity=0.419 Sum_probs=11.9
Q ss_pred HHHHHhhHHHHHHhhhhhHHHHHHH
Q psy1409 131 EMLIASNKSLAEYNLSQEEALLEKK 155 (320)
Q Consensus 131 e~ll~~N~~LAe~NL~~ep~Leelr 155 (320)
+.....|..|..-|-.++.+|.++-
T Consensus 104 qaqv~~ne~Ls~L~~EqEerL~ELE 128 (617)
T PF15070_consen 104 QAQVENNEQLSRLNQEQEERLAELE 128 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555545555544443
No 181
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=48.37 E-value=2.7e+02 Score=27.07 Aligned_cols=86 Identities=14% Similarity=0.100 Sum_probs=41.1
Q ss_pred HhccCCHHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 7 LLEHLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKS 86 (320)
Q Consensus 7 ~L~~lS~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~ 86 (320)
.|.+++.++|.. -+..|.+=..++.. +++++....=.++-+| |+..-.....+...+..+......+.++.+.
T Consensus 3 ~l~s~~l~~L~~---Ep~~L~~~~~~l~~-ql~~La~~~y~~fi~~---~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~ 75 (338)
T PF04124_consen 3 ELTSLSLESLFS---EPQSLSEEIASLDA-QLQSLAFRNYKTFIDN---AECSSDIRQELSSLSDSLDSLLDSLPELDEA 75 (338)
T ss_pred ccccCCHHHHHh---hHHHHHHHHHHHHH-HHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777776 66666666555542 4444433222222222 2222222333444455555555555555555
Q ss_pred HHHHHHHHHHhhh
Q psy1409 87 VESKVELIKSHKN 99 (320)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (320)
+..-.+..+++.+
T Consensus 76 ~~~f~~~~~~~~~ 88 (338)
T PF04124_consen 76 CQRFSSKAQKISE 88 (338)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 182
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=48.05 E-value=4e+02 Score=29.00 Aligned_cols=28 Identities=25% Similarity=0.510 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhcCC--CCHHHH
Q psy1409 195 LQTAASEIEEESEKVPEEFLNGT--IDVDKF 223 (320)
Q Consensus 195 Lq~a~~eaEeeSE~lae~FL~G~--idv~~F 223 (320)
|-.|.+..-++...|+.. |.++ |-+|=|
T Consensus 592 L~~aL~amqdk~~~LE~s-LsaEtriKldLf 621 (697)
T PF09726_consen 592 LMSALSAMQDKNQHLENS-LSAETRIKLDLF 621 (697)
T ss_pred HHHHHHHHHHHHHHHHHh-hhHHHHHHHHHH
Confidence 333555555666666666 4443 334444
No 183
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=48.00 E-value=85 Score=25.80 Aligned_cols=39 Identities=18% Similarity=0.009 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q psy1409 37 LTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLD 75 (320)
Q Consensus 37 ~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~ 75 (320)
++..+..+.+.|......|-+.|-.++=+-..||..|..
T Consensus 16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555554444444444444443
No 184
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=47.94 E-value=52 Score=33.96 Aligned_cols=12 Identities=25% Similarity=0.426 Sum_probs=5.5
Q ss_pred cCCHHHHHHHHH
Q psy1409 100 NVSTDTVLALLQ 111 (320)
Q Consensus 100 ~~Sp~~Ll~lLq 111 (320)
.++-++|..++.
T Consensus 189 ~~tee~L~~~F~ 200 (562)
T TIGR01628 189 SVNEDKLRELFA 200 (562)
T ss_pred cCCHHHHHHHHH
Confidence 344455544443
No 185
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=47.65 E-value=2.1e+02 Score=28.91 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1409 70 KSQLLDLNEQLTQLSKSVESKVELIKSHKNN 100 (320)
Q Consensus 70 r~~l~~~~~el~~l~~~~~~~~~~~~~~~~~ 100 (320)
-.++...+++.+++..+.+.+..+...++..
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~ 59 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQ 59 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777788877777777777776654
No 186
>KOG0132|consensus
Probab=47.63 E-value=56 Score=35.67 Aligned_cols=8 Identities=38% Similarity=0.845 Sum_probs=3.6
Q ss_pred CCCCCCCC
Q psy1409 299 HIQMTPYP 306 (320)
Q Consensus 299 ~~~~~~yp 306 (320)
+.+|+|||
T Consensus 626 ~Pg~np~~ 633 (894)
T KOG0132|consen 626 RPGYNPYP 633 (894)
T ss_pred CCCCCCCC
Confidence 33444454
No 187
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=47.51 E-value=2.3e+02 Score=26.14 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=7.2
Q ss_pred CCCCCCCCCCC
Q psy1409 285 GPGYPVSGGGM 295 (320)
Q Consensus 285 ~~pyp~~~~~m 295 (320)
++|||+.+.|.
T Consensus 218 ~Lpy~i~~~gs 228 (302)
T PF10186_consen 218 PLPYPITPSGS 228 (302)
T ss_pred CCCCCcccCcc
Confidence 37777766654
No 188
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=47.38 E-value=1.4e+02 Score=26.13 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q psy1409 192 LALLQTAASEIEEESEKVPEEF 213 (320)
Q Consensus 192 ~~~Lq~a~~eaEeeSE~lae~F 213 (320)
.+.||.++..+=.||+.+++.+
T Consensus 94 ~e~lQ~~vq~l~~E~qk~~k~v 115 (155)
T PF07464_consen 94 QEKLQSAVQSLVQESQKLAKEV 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666664
No 189
>KOG0964|consensus
Probab=46.94 E-value=4.9e+02 Score=29.70 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCCC
Q psy1409 285 GPGYPVSGGGMPLP 298 (320)
Q Consensus 285 ~~pyp~~~~~mp~p 298 (320)
.+-||.-+-+.||-
T Consensus 588 ~v~yp~~sdaiPli 601 (1200)
T KOG0964|consen 588 DVEYPKDSDAIPLI 601 (1200)
T ss_pred hccCCCCCCccchH
Confidence 56677766666653
No 190
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=46.92 E-value=90 Score=26.74 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=0.0
Q ss_pred cHHHHhccCCHHHHHhhhcCHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHH
Q psy1409 3 NLESLLEHLDISELKELVNDEETFNNFTKEATAT--LTTESNEQKEMLIASNKSLAEY 58 (320)
Q Consensus 3 ~~~~~L~~lS~eEL~~Ll~d~d~l~~f~~~l~~~--~vk~~~~~re~ll~~N~~LAe~ 58 (320)
++.+..+++|+++|++++ ++|+.+|.+--++ ..+....++...+.+.+.++..
T Consensus 13 ~lra~~re~~~e~Lee~~---ekl~~vv~er~~~~~~~~~~~~er~~~l~~i~~~~~~ 67 (134)
T PRK10328 13 TLRAMAREFSIDVLEEML---EKFRVVTKERREEEEQQQRELAERQEKINTWLELMKA 67 (134)
T ss_pred HHHHHHHhCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 191
>KOG2751|consensus
Probab=46.73 E-value=2.4e+02 Score=28.84 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=31.2
Q ss_pred CCHHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy1409 11 LDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQ 72 (320)
Q Consensus 11 lS~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~ 72 (320)
+=-.|++.+-++-|.+.+++.-|.+ +-+.. ..++++.+-+.+.+.+..+...|+++..+
T Consensus 147 ~ld~e~~~~~~e~~~Y~~~l~~Le~-~~~~~--~~~~~~~e~~~l~~eE~~L~q~lk~le~~ 205 (447)
T KOG2751|consen 147 KLDKEVEDAEDEVDTYKACLQRLEQ-QNQDV--SEEDLLKELKNLKEEEERLLQQLEELEKE 205 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cCccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666667777666642 22221 44555555555555555555555444433
No 192
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=46.53 E-value=89 Score=22.04 Aligned_cols=41 Identities=15% Similarity=0.272 Sum_probs=29.5
Q ss_pred HHhHHHHHHhcCCCCHHHHHHHhhHHHHHHHHhHHHHHHHH
Q psy1409 205 ESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRIKADKMA 245 (320)
Q Consensus 205 eSE~lae~FL~G~idv~~Fl~~f~~~R~~~h~Rk~K~e~l~ 245 (320)
.-+.|..+.-+|++++++-+..|.+...++...+.+.+...
T Consensus 7 ~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~L~~~e 47 (53)
T PF02609_consen 7 RLEEIVEKLESGELSLDESLKLYEEGMELIKKCQERLEEAE 47 (53)
T ss_dssp HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777778999999999999999977776655555443
No 193
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=45.38 E-value=1.5e+02 Score=23.28 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1409 44 QKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKN 99 (320)
Q Consensus 44 ~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~ 99 (320)
-...+-+.|+.|-.-|---+.+|...+.....-..-+..++...+-..++.+.+-.
T Consensus 23 ~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~ 78 (88)
T PF10241_consen 23 TLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKA 78 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566789999999999999999999999999999999999988888888876543
No 194
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=45.28 E-value=3e+02 Score=26.78 Aligned_cols=56 Identities=23% Similarity=0.237 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 39 TESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELI 94 (320)
Q Consensus 39 k~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~ 94 (320)
+++..---.+|-+|.+|=..--.+-=+++-||..|.+.-+.+..++..|.+|++.+
T Consensus 87 ~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~el 142 (302)
T PF09738_consen 87 AEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIREL 142 (302)
T ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445555555433333333444455555555555555555555554443
No 195
>KOG1853|consensus
Probab=45.01 E-value=2.9e+02 Score=26.53 Aligned_cols=56 Identities=18% Similarity=0.103 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 39 TESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELI 94 (320)
Q Consensus 39 k~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~ 94 (320)
+...+.+|++..=-+.-++---.++..|..+..+..+.-..-+.|...++.+..++
T Consensus 27 q~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~ 82 (333)
T KOG1853|consen 27 QHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQ 82 (333)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555554444444444445666666666666665555555555544444333
No 196
>KOG4196|consensus
Probab=44.78 E-value=2e+02 Score=24.67 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=19.3
Q ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 54 SLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKV 91 (320)
Q Consensus 54 ~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~ 91 (320)
.|-.+|-.+..+++.|+.++.....|+-.++.+|+.+.
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555544443
No 197
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=44.66 E-value=1.3e+02 Score=30.48 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=35.3
Q ss_pred HHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy1409 134 IASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNV 186 (320)
Q Consensus 134 l~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~ 186 (320)
+..|.+.-+.|+.+.. +......+...+.+.+++..+.+.+..+.+.++...
T Consensus 7 ir~n~~~v~~~l~~R~-~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i 58 (425)
T PRK05431 7 IRENPEAVKEALAKRG-FPLDVDELLELDEERRELQTELEELQAERNALSKEI 58 (425)
T ss_pred HHhCHHHHHHHHHhcC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666552 212245566888888888888888888888887665
No 198
>PRK11281 hypothetical protein; Provisional
Probab=44.60 E-value=5.5e+02 Score=29.62 Aligned_cols=51 Identities=24% Similarity=0.173 Sum_probs=33.6
Q ss_pred HHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 130 KEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIK 180 (320)
Q Consensus 130 ~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~ 180 (320)
....+..|+.|++..+..-.+++.+..+-...-..+..+....+...++.+
T Consensus 280 i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~ 330 (1113)
T PRK11281 280 VAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQIS 330 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667799999998888888888776655544455555555554444443
No 199
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=44.52 E-value=2.4e+02 Score=27.01 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=8.2
Q ss_pred HHHHHhhccHHHHHHHHHHHHH
Q psy1409 54 SLAEYNLSQEEALLEKKSQLLD 75 (320)
Q Consensus 54 ~LAe~NL~~ep~L~elr~~l~~ 75 (320)
.++...-+++.+|+..|.+|..
T Consensus 187 ~l~~de~~Le~KIekkk~ELER 208 (267)
T PF10234_consen 187 NLASDEANLEAKIEKKKQELER 208 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 200
>COG5244 NIP100 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]
Probab=44.20 E-value=1.7e+02 Score=30.57 Aligned_cols=56 Identities=13% Similarity=-0.045 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1409 42 NEQKEMLIASNKSLAEYNLSQEEA---LLEKKSQLLDLNEQLTQLSKSVESKVELIKSH 97 (320)
Q Consensus 42 ~~~re~ll~~N~~LAe~NL~~ep~---L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~ 97 (320)
-.++.....+|.++++.|+.-.-+ +..+=..=....+-+.++....+.+..++-.+
T Consensus 190 ~~~~~~t~n~~gs~~~~~~~~~~r~~~~d~L~~~N~~L~~~Id~ln~eLE~l~~Ql~~L 248 (669)
T COG5244 190 VSDISETLNRNGSIQRSSVRECERSNIHDVLFLVNGILDGVIDELNGELERLRRQLVSL 248 (669)
T ss_pred HhhhhhccccchHHHHHHHHHHHhccchHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 446778889999999999875544 33333332233333444444444444443333
No 201
>KOG4460|consensus
Probab=43.99 E-value=3.9e+02 Score=28.49 Aligned_cols=115 Identities=16% Similarity=0.080 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHH
Q psy1409 61 SQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSL 140 (320)
Q Consensus 61 ~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~~L 140 (320)
+.+-++..++.+..+..++++.+.+......+.+..+.++ +|+.++. +...+..+..=+++
T Consensus 585 e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R----------------~eea~e~---qe~L~~~~~~L~~~ 645 (741)
T KOG4460|consen 585 EIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADR----------------YEEAKEK---QEDLMNRMKKLLHS 645 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHh---HHHHHHHHHHHHhc
Q ss_pred HHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q psy1409 141 AEYNLSQEEALL-EKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQ 196 (320)
Q Consensus 141 Ae~NL~~ep~Le-elr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq 196 (320)
+...+.--.+-+ +|+++++-.-.+++.|....+....+.+. +++.-.+..+-|+
T Consensus 646 ~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~K--Q~~H~~~v~~al~ 700 (741)
T KOG4460|consen 646 FHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDK--QQQHMEKVLSALP 700 (741)
T ss_pred ccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhcc
No 202
>PLN02939 transferase, transferring glycosyl groups
Probab=43.84 E-value=5.4e+02 Score=29.27 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH
Q psy1409 50 ASNKSLAEYNLSQEEALLEKKSQLLDL 76 (320)
Q Consensus 50 ~~N~~LAe~NL~~ep~L~elr~~l~~~ 76 (320)
.+--.|-+.|..+...|.-+|.++..-
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (977)
T PLN02939 226 KELDVLKEENMLLKDDIQFLKAELIEV 252 (977)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344456678888888888888887653
No 203
>PLN02320 seryl-tRNA synthetase
Probab=43.72 E-value=1.5e+02 Score=30.89 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy1409 71 SQLLDLNEQLTQLSKSVESKVELIKSHKNNV 101 (320)
Q Consensus 71 ~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~ 101 (320)
.++...+++.+++..+++.+..+.+.++..+
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i 123 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKM 123 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888888776653
No 204
>KOG0307|consensus
Probab=43.60 E-value=73 Score=35.92 Aligned_cols=68 Identities=19% Similarity=0.298 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCC-CCCCCCCCCC--CCCCCCCCCCC
Q psy1409 251 RNSFGSPTHNGVGGHNGGSSSFGGMYPPVPVP---PMGPGYPVSGGGMPLP-HIQMTPYPQL--PQMPTPSYPFY 319 (320)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~pyp~~~~~mp~p-~~~~~~yp~~--~~~~~~~~~~~ 319 (320)
+|.+.+|+....+.+.......++||++.++. |.+.+-|+.+ .||.. -....++.+| ||++...+||+
T Consensus 769 s~~~~qpPt~~~g~p~~p~p~p~~~~~p~~~s~~~p~~~stP~~~-~~~~~P~~~~~~~~~~~~~~~~~~S~p~~ 842 (1049)
T KOG0307|consen 769 SRPPQQPPTSANGFPYNPSPAPQPSYTPAPQSNARPNSASTPTPP-AFSFTPPPSSGAADQYSQPPAAPPSFPYA 842 (1049)
T ss_pred cCCCCCCCccccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCC-CcCCCCCCcccccccCCCCCCCCccCCCC
No 205
>KOG0249|consensus
Probab=43.16 E-value=4.9e+02 Score=28.65 Aligned_cols=16 Identities=31% Similarity=0.208 Sum_probs=6.5
Q ss_pred HhhccHHHHHHHHHHH
Q psy1409 58 YNLSQEEALLEKKSQL 73 (320)
Q Consensus 58 ~NL~~ep~L~elr~~l 73 (320)
.|...+++|+-+-.++
T Consensus 113 kn~slqerLelaE~~l 128 (916)
T KOG0249|consen 113 KNRSLQERLELAEPKL 128 (916)
T ss_pred hhhhhhHHHHHhhHhh
Confidence 3444444444333333
No 206
>KOG0946|consensus
Probab=43.15 E-value=5.1e+02 Score=28.88 Aligned_cols=43 Identities=14% Similarity=0.164 Sum_probs=26.9
Q ss_pred CHHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q psy1409 12 DISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSL 55 (320)
Q Consensus 12 S~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~L 55 (320)
+...++++.+.--+|..++.+++. +..++.+.-..+-.+|+.|
T Consensus 648 ~~k~~e~l~~~~~kyK~lI~~lD~-~~e~lkQ~~~~l~~e~eeL 690 (970)
T KOG0946|consen 648 AEKYHEELDDIQQKYKGLIRELDY-QIENLKQMEKELQVENEEL 690 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHH
Confidence 445566677777777788777764 4555555555555555555
No 207
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=43.05 E-value=1.5e+02 Score=22.61 Aligned_cols=56 Identities=16% Similarity=0.307 Sum_probs=41.8
Q ss_pred HHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy1409 130 KEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNN 185 (320)
Q Consensus 130 ~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~ 185 (320)
+..|+.+=+.|+...+.....|..+|.++.+.=..+..+..........+..+..+
T Consensus 14 Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 14 IAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666669999999999999999888877777777777777777766665443
No 208
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=42.87 E-value=3.3e+02 Score=26.61 Aligned_cols=69 Identities=23% Similarity=0.271 Sum_probs=36.4
Q ss_pred cCCHHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHH-HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Q psy1409 10 HLDISELKELVNDEETFNNFTKEATATLTTESNEQK-EMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQL 80 (320)
Q Consensus 10 ~lS~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~r-e~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el 80 (320)
.--+.+..+--+|-|++...+.+-.. -.++...+ -.|+..|..|.++|-..+..|...+.++....-++
T Consensus 51 ~~rv~qmtkty~Didavt~lLeEker--DLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL 120 (306)
T PF04849_consen 51 SDRVSQMTKTYNDIDAVTRLLEEKER--DLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHEL 120 (306)
T ss_pred ccchhhhhcchhhHHHHHHHHHHHhh--hHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555566666655554321 11222222 45677777777777776666655555554444333
No 209
>PF11567 PfUIS3: Plasmodium falciparum UIS3 membrane protein; InterPro: IPR021626 UIS3 is a membrane protein essential for sporozoite development in infected hepatocytes. This family is 130-229 of the Plasmodium falciparum UIS3 protein which is compact and has an all alpha-helical structure.PfUIS3(130-229) interacts with lipids, phospholipid lysosomes, the human liver fatty acid-binding protein and with the lipid phosphatidylethanolamine. The interaction with liver fatty acid-binding protein provides the parasite with a method to import essential fatty acids/lipids during rapid growth phases of sporozoites []. ; PDB: 2VWA_C.
Probab=42.86 E-value=48 Score=26.56 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=25.9
Q ss_pred HHHhccCCHHHHHhhhcCHHHHHHHHHhccH
Q psy1409 5 ESLLEHLDISELKELVNDEETFNNFTKEATA 35 (320)
Q Consensus 5 ~~~L~~lS~eEL~~Ll~d~d~l~~f~~~l~~ 35 (320)
...+.+||.++=.-+++|-|++..|+.+|++
T Consensus 36 qhHF~~LSn~Qq~y~ind~dY~rkiVQ~L~E 66 (101)
T PF11567_consen 36 QHHFSNLSNEQQKYLINDYDYIRKIVQTLDE 66 (101)
T ss_dssp HHHHHHS-HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHhchHHHHHHHHHHHHh
Confidence 4568899999999999999999999999864
No 210
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=42.31 E-value=2.2e+02 Score=24.40 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q psy1409 50 ASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQL 83 (320)
Q Consensus 50 ~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l 83 (320)
+.+..|=..|+.++..|..|...+...=.++..+
T Consensus 21 ~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~ 54 (143)
T PF12718_consen 21 AKVKQLEQENEQKEQEITSLQKKNQQLEEELDKL 54 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444433333333333
No 211
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=42.22 E-value=3e+02 Score=25.92 Aligned_cols=21 Identities=29% Similarity=0.397 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q psy1409 190 TVLALLQTAASEIEEESEKVP 210 (320)
Q Consensus 190 ~l~~~Lq~a~~eaEeeSE~la 210 (320)
.+.+.+..++..++++-..+.
T Consensus 142 e~~~~~e~e~~~i~e~~~~~~ 162 (239)
T COG1579 142 EAEARLEEEVAEIREEGQELS 162 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444443
No 212
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=42.20 E-value=4.2e+02 Score=27.55 Aligned_cols=158 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 13 ISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVE 92 (320)
Q Consensus 13 ~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~ 92 (320)
.+.|.+...--..+...-..+. +..+...+.+.+..+.+.+...|-..+-++.+++..+........+-.+.+++...
T Consensus 32 ~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~ 109 (475)
T PRK10361 32 AEQLAEREEMVAELSAAKQQIT--QSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQ 109 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 93 LIKSHKNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSV 172 (320)
Q Consensus 93 ~~~~~~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~ 172 (320)
++..--+.++-.-+. +....+.+.--+. |-.---..+..|+.|+.++.+.|.+-..-....
T Consensus 110 ~L~~~F~~LA~~ile---~k~~~f~~~~~~~----------------l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L 170 (475)
T PRK10361 110 RLSEQFENLANRIFE---HSNRRVDEQNRQS----------------LNSLLSPLREQLDGFRRQVQDSFGKEAQERHTL 170 (475)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHH----------------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhcCCHHHH
Q psy1409 173 ESKVELIKSHKNNVSTDTV 191 (320)
Q Consensus 173 ~~k~~kl~~~~~~~sp~~l 191 (320)
..-.+.+.++....+-++.
T Consensus 171 ~~qi~~L~~~n~~i~~ea~ 189 (475)
T PRK10361 171 AHEIRNLQQLNAQMAQEAI 189 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 213
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=42.14 E-value=3.4e+02 Score=26.53 Aligned_cols=17 Identities=6% Similarity=0.311 Sum_probs=11.5
Q ss_pred HHHHHHHhhHHHHHHHH
Q psy1409 220 VDKFLETFTPKRILMHL 236 (320)
Q Consensus 220 v~~Fl~~f~~~R~~~h~ 236 (320)
+.+|-++|.+.-.+.|-
T Consensus 278 L~elqdkY~E~~~mL~E 294 (306)
T PF04849_consen 278 LQELQDKYAECMAMLHE 294 (306)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56677777776666665
No 214
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=41.93 E-value=62 Score=32.97 Aligned_cols=51 Identities=14% Similarity=0.215 Sum_probs=35.8
Q ss_pred hcCCHHHHHHHH----------HHHHHHH-HHHHhHHHHHHhcCCCCHHHHHHHhhHHHHHH
Q psy1409 184 NNVSTDTVLALL----------QTAASEI-EEESEKVPEEFLNGTIDVDKFLETFTPKRILM 234 (320)
Q Consensus 184 ~~~sp~~l~~~L----------q~a~~ea-EeeSE~lae~FL~G~idv~~Fl~~f~~~R~~~ 234 (320)
..|+|+.+..+| ..+-... +++.+.+++++..|..+++||+.+++..++.-
T Consensus 282 e~f~p~~~~~rilgmgDi~~L~ek~~~~~~~~~~~~~~~k~~~~~f~l~D~~~q~~~i~kmG 343 (429)
T TIGR01425 282 EIFKTQPFISKLLGMGDIEGLIDKVQDLKLDDNEKALIEKLKEGTFTLRDMYEQFQNLLKMG 343 (429)
T ss_pred CcCChHHHHHHHhcCCCcHHHHHHHHHhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 567777665332 2222222 34578899999999999999999999877644
No 215
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=41.71 E-value=3.9e+02 Score=27.06 Aligned_cols=20 Identities=10% Similarity=0.147 Sum_probs=9.4
Q ss_pred HHHHhhhhhHHHHHHHHHHH
Q psy1409 140 LAEYNLSQEEALLEKKSQLL 159 (320)
Q Consensus 140 LAe~NL~~ep~Leelr~ql~ 159 (320)
+.....+.-|.+..++.++.
T Consensus 266 l~~~y~~~hP~v~~l~~qi~ 285 (498)
T TIGR03007 266 LRLRYTDKHPDVIATKREIA 285 (498)
T ss_pred HHHHhcccChHHHHHHHHHH
Confidence 33344444555555554443
No 216
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=41.38 E-value=3.2e+02 Score=26.03 Aligned_cols=76 Identities=11% Similarity=0.086 Sum_probs=54.6
Q ss_pred cCCHHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 10 HLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSK 85 (320)
Q Consensus 10 ~lS~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~ 85 (320)
+-|...-+.||.--+.|-.++..+..---+.+...+.+|-...+..+..=-.++.+++.+.+.+....++++.|..
T Consensus 34 ~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~T 109 (258)
T PF15397_consen 34 DSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLST 109 (258)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566777777777777766653222355677888888888887776667888888888888888777777753
No 217
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=41.22 E-value=2.6e+02 Score=27.19 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=54.4
Q ss_pred CHHHHHh-hhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 12 DISELKE-LVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESK 90 (320)
Q Consensus 12 S~eEL~~-Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~ 90 (320)
|..+|++ |.+=+++|..-..+. -++.+++..++=++..|=..=..++..+.+++.++.++..++..++..++.+
T Consensus 78 s~r~lk~~l~evEekyrkAMv~n-----aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L 152 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSN-----AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSL 152 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-----hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566655 555567776443332 3456677777777777766666677777777777777777777777777777
Q ss_pred HHHHHHhhh
Q psy1409 91 VELIKSHKN 99 (320)
Q Consensus 91 ~~~~~~~~~ 99 (320)
..++..+-+
T Consensus 153 ~~e~~~Lre 161 (302)
T PF09738_consen 153 REELDELRE 161 (302)
T ss_pred HHHHHHHHH
Confidence 776665543
No 218
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=41.01 E-value=1.3e+02 Score=28.29 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=32.1
Q ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1409 58 YNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNN 100 (320)
Q Consensus 58 ~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~ 100 (320)
..+.++.+|+.++.++.+....+.++.-..+++.+++++++..
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~d 97 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQ 97 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777888888888887777777777777777777777653
No 219
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=41.00 E-value=5.1e+02 Score=28.21 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH-----HHHHHHHHH
Q psy1409 125 ESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDT-----VLALLQTAA 199 (320)
Q Consensus 125 ~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~-----l~~~Lq~a~ 199 (320)
+|..+...|..+=+..=+.....+.++.++|....+.-.+...|-......+.+=..+-...|-+| |...|-+|-
T Consensus 549 ~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~ak 628 (697)
T PF09726_consen 549 QLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAK 628 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444455555544432111122333333333333333333323333322 344555555
Q ss_pred HHHHHHHhHH
Q psy1409 200 SEIEEESEKV 209 (320)
Q Consensus 200 ~eaEeeSE~l 209 (320)
.+.|.-...|
T Consensus 629 rq~ei~~~~~ 638 (697)
T PF09726_consen 629 RQLEIAQGQL 638 (697)
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 220
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=40.93 E-value=3.4e+02 Score=28.67 Aligned_cols=84 Identities=14% Similarity=0.288 Sum_probs=57.2
Q ss_pred HHHHHhhhcCHH------HHHHHHHhccHHHHHH--HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH----HHHHHHHH
Q psy1409 13 ISELKELVNDEE------TFNNFTKEATATLTTE--SNEQKEMLIASNKSLAEYNLSQEEALLEKKSQ----LLDLNEQL 80 (320)
Q Consensus 13 ~eEL~~Ll~d~d------~l~~f~~~l~~~~vk~--~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~----l~~~~~el 80 (320)
+++|+.|++|++ .|++||..+.+ -+.. -...|..++..=..|+..==..-..|..+|.. +.....++
T Consensus 94 L~~le~ll~~~~~~sl~~~L~~ff~s~q~-la~~P~~~a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~v 172 (552)
T COG1256 94 LSQLESLLSEPSESSLSTLLNDFFNSLQE-LASNPSDTAARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEV 172 (552)
T ss_pred HHHHHHHhCCCccccHHHHHHHHHHHHHH-HHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 578889999988 78888887631 1111 02377777777777776444445566666655 44457788
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy1409 81 TQLSKSVESKVELIKSH 97 (320)
Q Consensus 81 ~~l~~~~~~~~~~~~~~ 97 (320)
..|-.++.++.++....
T Consensus 173 NsLl~qIa~lN~qI~~~ 189 (552)
T COG1256 173 NSLLKQIADLNKQIRKV 189 (552)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88888888888887766
No 221
>KOG2675|consensus
Probab=40.74 E-value=82 Score=32.24 Aligned_cols=12 Identities=0% Similarity=0.111 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy1409 158 LLDLNEQLTQLS 169 (320)
Q Consensus 158 l~~~y~el~~L~ 169 (320)
+.+...++..++
T Consensus 114 I~e~i~eI~~fk 125 (480)
T KOG2675|consen 114 INEEIGEINNFK 125 (480)
T ss_pred HHHhhhHHhhhh
Confidence 333333333333
No 222
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=39.86 E-value=2.1e+02 Score=26.51 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1409 151 LLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEE 212 (320)
Q Consensus 151 Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~ 212 (320)
++++|..|.-...|+..++..-.+..++.++- -..|+++|..++.|=||.=+.+-.-
T Consensus 3 ~EELRq~Ll~TTlELE~~k~~A~EElRk~eeq-----i~~L~~Ll~~a~~ERDEAr~qlq~L 59 (214)
T PF07795_consen 3 MEELRQKLLYTTLELEATKMEANEELRKREEQ-----IAHLKDLLKKAYQERDEAREQLQKL 59 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666655556666544433333333321 1235666677776666665554443
No 223
>KOG0612|consensus
Probab=39.76 E-value=6.7e+02 Score=29.24 Aligned_cols=17 Identities=29% Similarity=0.214 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHhHHH
Q psy1409 194 LLQTAASEIEEESEKVP 210 (320)
Q Consensus 194 ~Lq~a~~eaEeeSE~la 210 (320)
.++.-+.+.+++.+.|-
T Consensus 718 k~e~~~~~i~~e~e~L~ 734 (1317)
T KOG0612|consen 718 KAENLLLEIEAELEYLS 734 (1317)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444444444444443
No 224
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=39.76 E-value=2e+02 Score=23.25 Aligned_cols=85 Identities=13% Similarity=0.213 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhHHHHHHhcC-CCCHHHHHHHhhHHH
Q psy1409 153 EKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNG-TIDVDKFLETFTPKR 231 (320)
Q Consensus 153 elr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~FL~G-~idv~~Fl~~f~~~R 231 (320)
.-+.++...|.+.+.|...+....++..++... +..|.....+-..-. .|.+.|-.- +.+ -.|++++
T Consensus 12 ~Yk~eF~~~y~EYk~L~~~v~~v~~~f~~L~~~------l~~l~~~s~ey~~i~-~I~~eY~k~Kk~~-----p~y~~~K 79 (101)
T PF07303_consen 12 RYKAEFNDDYDEYKELHAEVDAVSRRFQELDSE------LKRLPPGSQEYKRIA-QILQEYNKKKKRD-----PNYQEKK 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHS-TTSHHHHHHH----HHHHHHHHTS-----HHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH------HHhCCCCCcHHHHHH-HHHHHHHHHHhcC-----ccHHHHH
Confidence 445566778888888888887777766665322 233333223333333 444555321 112 4588888
Q ss_pred HHHHHhHHHHHHHHHHHh
Q psy1409 232 ILMHLRRIKADKMAEMLT 249 (320)
Q Consensus 232 ~~~h~Rk~K~e~l~~~~~ 249 (320)
..|.--+-|+..++.++.
T Consensus 80 ~Rc~yL~~KL~HIK~~I~ 97 (101)
T PF07303_consen 80 KRCEYLHNKLSHIKQLIQ 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888888775
No 225
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=39.74 E-value=2.3e+02 Score=23.80 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 104 DTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKS 181 (320)
Q Consensus 104 ~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~ 181 (320)
-.+...|+......| +|+..++.+...+-++-..+++..+..-...++++ ....++..|...+..+..+++.
T Consensus 15 ~~~ve~L~s~lr~~E--~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~----~~~~~~~~L~~el~~l~~ry~t 86 (120)
T PF12325_consen 15 VQLVERLQSQLRRLE--GELASLQEELARLEAERDELREEIVKLMEENEELR----ALKKEVEELEQELEELQQRYQT 86 (120)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555543332 33444455555554444445544444443444433 2233344444444444444433
No 226
>PF05218 DUF713: Protein of unknown function (DUF713); InterPro: IPR007883 This family contains proteins of unknown function from Caenorhabditis species.
Probab=39.72 E-value=2.8e+02 Score=24.84 Aligned_cols=127 Identities=15% Similarity=0.189 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHH
Q psy1409 65 ALLEKKSQLLDLNEQ---LTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLA 141 (320)
Q Consensus 65 ~L~elr~~l~~~~~e---l~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~~LA 141 (320)
.|.++|.+...++.- .=.|+.+|+++.+.-.+....+ ...|-.+...-..+.++ ++
T Consensus 2 El~~~r~E~k~r~~a~~~CI~Lk~rFEekE~eWsdWLk~~-R~~I~~~~~~f~~Fe~~---~~----------------- 60 (182)
T PF05218_consen 2 ELRKMRRESKQRFAAFLQCIQLKQRFEEKEQEWSDWLKKL-RQPIVRLKNRFSDFEDE---IK----------------- 60 (182)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHH---Hh-----------------
Confidence 355666665555433 3468889999998888887766 33333322222222111 10
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy1409 142 EYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEF 213 (320)
Q Consensus 142 e~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~F 213 (320)
.+-........+.+++......+..++.....-...++.+...|...-.+..||..++..-..--.+-+..
T Consensus 61 -~~~~~~e~~~~~~~E~~~l~~~v~~a~~~l~~~f~~L~~L~~~~~D~iFlkvLqK~i~~va~~L~~il~~l 131 (182)
T PF05218_consen 61 -FKKTDEEDEEDLQSEISNLHKSVMSAYNMLENAFENLKKLSEKFPDKIFLKVLQKCISDVANKLLEILESL 131 (182)
T ss_pred -hcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011112223444444455555555556666667888899999999999999999988777766655553
No 227
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=39.65 E-value=2.8e+02 Score=24.85 Aligned_cols=56 Identities=20% Similarity=0.153 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 126 SNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKS 181 (320)
Q Consensus 126 l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~ 181 (320)
+-.-.+.=...|.+|++-|--....|+..+........++..|...|......+..
T Consensus 65 ~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ 120 (182)
T PF15035_consen 65 ALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQ 120 (182)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444556788888887777777777777777777777777777766555543
No 228
>PRK10698 phage shock protein PspA; Provisional
Probab=39.20 E-value=3.1e+02 Score=25.21 Aligned_cols=34 Identities=12% Similarity=0.207 Sum_probs=22.3
Q ss_pred HHHHHHHhhcCCHHHHH---HHHHHHHHHHHHHHhHH
Q psy1409 176 VELIKSHKNNVSTDTVL---ALLQTAASEIEEESEKV 209 (320)
Q Consensus 176 ~~kl~~~~~~~sp~~l~---~~Lq~a~~eaEeeSE~l 209 (320)
..+.++.+..++.+... .++...+.+.|.+++..
T Consensus 149 ~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~ 185 (222)
T PRK10698 149 SRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHh
Confidence 34555555666665444 45888888888888775
No 229
>KOG3841|consensus
Probab=39.08 E-value=2.3e+02 Score=28.68 Aligned_cols=19 Identities=21% Similarity=0.543 Sum_probs=15.4
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q psy1409 284 MGPGYPVSGGGMPLPHIQM 302 (320)
Q Consensus 284 ~~~pyp~~~~~mp~p~~~~ 302 (320)
.+.+||.+|...|+||..+
T Consensus 207 vq~~~~~qp~~l~l~~~e~ 225 (455)
T KOG3841|consen 207 VQTSYPLQPKSLPLSGFES 225 (455)
T ss_pred cCCCCcCCCCCCCCCCCcc
Confidence 3789999999888887753
No 230
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=39.02 E-value=3.5e+02 Score=25.79 Aligned_cols=89 Identities=10% Similarity=0.092 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC--------------------HHHHHHHHHHHHHHHHHHHhHHHH---HHhcCCC
Q psy1409 162 NEQLTQLSKSVESKVELIKSHKNNVS--------------------TDTVLALLQTAASEIEEESEKVPE---EFLNGTI 218 (320)
Q Consensus 162 y~el~~L~~~~~~k~~kl~~~~~~~s--------------------p~~l~~~Lq~a~~eaEeeSE~lae---~FL~G~i 218 (320)
...+..+.-.|+.+..+++....+.+ -+.+..-+..|..+.|+.=|..+. .|++.++
T Consensus 127 rKkL~k~~LD~D~~K~R~~~a~k~s~~~~~~~~~~~~~~~~~~~~K~~~lkeE~eea~~K~E~~kd~~~a~Mynfl~kE~ 206 (257)
T cd07620 127 KKQFAKLTTDWNSAKSRSPQAAGRSPRSGGRSEEVGEHQGIRRANKGEPLKEEEEECWRKLEQCKDQYSADLYHFATKED 206 (257)
T ss_pred HHHHHhHHhhHHHHHHHHHHhhccccCCccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33455556667777777755332211 013445555555555444333322 7899999
Q ss_pred CHHHHHHHhhHHHHHHHHhHH-HHHHHHHHHhc
Q psy1409 219 DVDKFLETFTPKRILMHLRRI-KADKMAEMLTK 250 (320)
Q Consensus 219 dv~~Fl~~f~~~R~~~h~Rk~-K~e~l~~~~~~ 250 (320)
+...++..|.+.---||.+.+ -.+.+.-.++.
T Consensus 207 e~a~~l~~lveaQ~~YHrqsl~~Le~~l~~~~~ 239 (257)
T cd07620 207 SYANYFIRLLELQAEYHKNSLEFLDKNITELKE 239 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888 55655555554
No 231
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=38.86 E-value=2.1e+02 Score=25.26 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=24.9
Q ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 58 YNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELI 94 (320)
Q Consensus 58 ~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~ 94 (320)
.+-....++++++.+|..+-.++..|+++.+.+.+.+
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445567777777777777777777777666666544
No 232
>PRK10867 signal recognition particle protein; Provisional
Probab=38.80 E-value=50 Score=33.62 Aligned_cols=51 Identities=22% Similarity=0.410 Sum_probs=37.6
Q ss_pred hcCCHHHHHHHHH----------HHHHHH-HHHHhHHHHHHhcCCCCHHHHHHHhhHHHHHH
Q psy1409 184 NNVSTDTVLALLQ----------TAASEI-EEESEKVPEEFLNGTIDVDKFLETFTPKRILM 234 (320)
Q Consensus 184 ~~~sp~~l~~~Lq----------~a~~ea-EeeSE~lae~FL~G~idv~~Fl~~f~~~R~~~ 234 (320)
..|+|+.+..+|- .+.... +++.+.+++++..|..+++||+.+++..++.-
T Consensus 283 e~f~p~~~~~~ilgmgD~~~l~e~~~~~~~~~~~~~~~~~~~~g~f~l~d~~~q~~~~~kmG 344 (433)
T PRK10867 283 EPFHPDRMASRILGMGDVLSLIEKAQEVVDEEKAEKLAKKLKKGKFDLEDFLEQLQQMKKMG 344 (433)
T ss_pred ccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 6778887775543 222222 34468899999999999999999999988654
No 233
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=38.76 E-value=2.6e+02 Score=24.19 Aligned_cols=87 Identities=24% Similarity=0.366 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhHHHHHH---hcCC--C---C
Q psy1409 148 EEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEF---LNGT--I---D 219 (320)
Q Consensus 148 ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~F---L~G~--i---d 219 (320)
..++.++-.++.+.-.++..+...+..+...+..+...-+.+-|.. .+.+.+.+.+.+.++. -.|. + +
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~----~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee 146 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELRE----EIEELEEEIEELEEKLEKLRSGSKPVSPEE 146 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence 3445666666666677777777788888888888777666555554 3333333444433332 1221 2 2
Q ss_pred HHHHHHHhhHHHHHHHHhH
Q psy1409 220 VDKFLETFTPKRILMHLRR 238 (320)
Q Consensus 220 v~~Fl~~f~~~R~~~h~Rk 238 (320)
+......|...++.+-.||
T Consensus 147 ~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 147 KEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555443
No 234
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=38.74 E-value=1.9e+02 Score=27.27 Aligned_cols=10 Identities=10% Similarity=0.288 Sum_probs=4.2
Q ss_pred HHHHHHHHhc
Q psy1409 241 ADKMAEMLTK 250 (320)
Q Consensus 241 ~e~l~~~~~~ 250 (320)
.+-|+..+++
T Consensus 64 i~eLe~ql~q 73 (247)
T PF09849_consen 64 IQELEAQLQQ 73 (247)
T ss_pred HHHHHHHHHh
Confidence 3444444433
No 235
>KOG2398|consensus
Probab=38.68 E-value=5.2e+02 Score=27.69 Aligned_cols=84 Identities=21% Similarity=0.202 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhcCCHHHHHHHHHHHHHHHHHHHhH---HHHHHhc--CCCC
Q psy1409 148 EEALLEKKSQLLDLNEQLTQLSKSVESKVELIKS---HKNNVSTDTVLALLQTAASEIEEESEK---VPEEFLN--GTID 219 (320)
Q Consensus 148 ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~---~~~~~sp~~l~~~Lq~a~~eaEeeSE~---lae~FL~--G~id 219 (320)
+..+.+.+.+....+..+...+..|..++..... -.+..-...+...|...+..+.+.|.. ..+.|-. -...
T Consensus 145 ~~~i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~~Ee~rl~~lk~~l~~~~~~is~~~~~~~q~~E~~k~~le~~s 224 (611)
T KOG2398|consen 145 ELKIKEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQEIEESRLSFLKEELWLFANQISESCVKIDQVMEEFKLTLESCS 224 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhccCC
Confidence 3444555555556666666666666555443322 112333444555555555555554433 3444421 1346
Q ss_pred HHHHHHHhhHHH
Q psy1409 220 VDKFLETFTPKR 231 (320)
Q Consensus 220 v~~Fl~~f~~~R 231 (320)
++.+|.+|.+.+
T Consensus 225 v~~~i~~fv~~k 236 (611)
T KOG2398|consen 225 VDEDITKFVEAK 236 (611)
T ss_pred HHHHHHHHhhcc
Confidence 888888888765
No 236
>KOG3671|consensus
Probab=38.44 E-value=94 Score=32.38 Aligned_cols=7 Identities=29% Similarity=0.634 Sum_probs=3.2
Q ss_pred HHHHhhH
Q psy1409 223 FLETFTP 229 (320)
Q Consensus 223 Fl~~f~~ 229 (320)
|+-.|.+
T Consensus 291 fi~~fi~ 297 (569)
T KOG3671|consen 291 FIYDFIQ 297 (569)
T ss_pred ccccchh
Confidence 4444444
No 237
>KOG1984|consensus
Probab=38.30 E-value=78 Score=35.15 Aligned_cols=13 Identities=31% Similarity=0.439 Sum_probs=6.0
Q ss_pred CCCCCCCCC-CCCC
Q psy1409 295 MPLPHIQMT-PYPQ 307 (320)
Q Consensus 295 mp~p~~~~~-~yp~ 307 (320)
-|+||...+ |||.
T Consensus 221 ~~~~g~~~~g~~p~ 234 (1007)
T KOG1984|consen 221 APAPGGPGSGPGPN 234 (1007)
T ss_pred CCCCCCCCCCCCCC
Confidence 344444444 5554
No 238
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.79 E-value=3.1e+02 Score=24.76 Aligned_cols=99 Identities=12% Similarity=0.172 Sum_probs=62.2
Q ss_pred HHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH-
Q psy1409 128 EQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSV--ESKVELIKSHKNNVSTDTVLALLQTAASEIEE- 204 (320)
Q Consensus 128 ~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~--~~k~~kl~~~~~~~sp~~l~~~Lq~a~~eaEe- 204 (320)
....+|-..-..|....|++=|-=+.+. ....+++.++... +.-.+=...++..-+++.|.+.|..-....-.
T Consensus 37 ~aLq~LGe~L~~L~~~~L~KiPL~E~L~----~Ai~~aqri~~~~arrRQlQyIGKlmR~~DvepI~~~Ldkl~~~~~q~ 112 (187)
T COG3028 37 EALQDLGEELVDLTKAALAKIPLDEDLL----EAIELAQRIKSEIARRRQLQYIGKLMRDRDVEPIRAALDKLRNRHNQQ 112 (187)
T ss_pred HHHHHHHHHHHhcCHHHHhhCCCChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhhhHHHH
Confidence 3444455555567777888777667776 4444455555542 22223345677888999998877654444333
Q ss_pred -----HHhHHHHHHh-cCCCCHHHHHHHhhHH
Q psy1409 205 -----ESEKVPEEFL-NGTIDVDKFLETFTPK 230 (320)
Q Consensus 205 -----eSE~lae~FL-~G~idv~~Fl~~f~~~ 230 (320)
.-|.+-++.+ +|.--+++|+.+|-..
T Consensus 113 ~a~lHklE~~RdrLia~GD~Alt~~l~~~P~a 144 (187)
T COG3028 113 VALLHKLEQLRDRLIAEGDGALTEFLNQYPDA 144 (187)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHCCcc
Confidence 3455556666 4577899999999763
No 239
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.62 E-value=2.7e+02 Score=24.14 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=15.3
Q ss_pred CHHHHHHHhhHHHHHHHHhHHHHHHHHHH
Q psy1409 219 DVDKFLETFTPKRILMHLRRIKADKMAEM 247 (320)
Q Consensus 219 dv~~Fl~~f~~~R~~~h~Rk~K~e~l~~~ 247 (320)
++...+..|......||.+. .+.|..+
T Consensus 189 dlk~~l~~~~~~qi~~~~~~--~~~W~~~ 215 (218)
T cd07596 189 DLKAALKEFARLQVQYAEKI--AEAWESL 215 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHhh
Confidence 45666666666666666543 3445554
No 240
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=37.43 E-value=3.8e+02 Score=25.65 Aligned_cols=42 Identities=21% Similarity=0.212 Sum_probs=22.5
Q ss_pred cCCHHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q psy1409 10 HLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNK 53 (320)
Q Consensus 10 ~lS~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~ 53 (320)
.+++++|..|+..=+.|.-.+.+++ +++++-...+......+
T Consensus 82 ~~~l~~l~~Ll~e~~~L~~~~pEi~--~L~~l~~~ve~f~~~a~ 123 (335)
T PF08429_consen 82 KLTLEELEALLEEIESLPFDCPEID--QLKELLEEVEEFQSRAQ 123 (335)
T ss_pred cCCHHHHHHHHHHHhcCCeeCchHH--HHHHHHHHHHHHHHHHH
Confidence 4788888888866554433333332 34444444444443333
No 241
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=37.14 E-value=6.1e+02 Score=28.01 Aligned_cols=203 Identities=17% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHhccCCHHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHH-------------------------HHHHHHH
Q psy1409 4 LESLLEHLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIAS-------------------------NKSLAEY 58 (320)
Q Consensus 4 ~~~~L~~lS~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~-------------------------N~~LAe~ 58 (320)
|...|... +....+|+++...|..|+.++. -+.+-....+.-+.. -....-.
T Consensus 514 fv~~Leke-Vh~C~DLLsgkadLE~fieE~s--~tLdwIls~~~SLqDv~s~~sEIK~~f~~~ss~e~E~~~~dea~~~~ 590 (769)
T PF05911_consen 514 FVLVLEKE-VHVCQDLLSGKADLERFIEEFS--LTLDWILSNCFSLQDVSSMRSEIKKNFDGDSSSEAEINSEDEADTSE 590 (769)
T ss_pred HHHHHHHH-HHHHHHHhcchhHHHHHHHHHH--HHHHHHHHccchHHHHHHHHHHHHHhhhhcccccccccchHHHHHHH
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHH-HHHHhhhhhhhhHHHHHHHHHhh
Q psy1409 59 NLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAA-SEIEEESETTESNEQKEMLIASN 137 (320)
Q Consensus 59 NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~-~~~eeesE~k~l~~~~e~ll~~N 137 (320)
+...+.+|+.+++.-...-..+.......+....++++. .-....|..-|.... ....-+.+++.+...++.+-...
T Consensus 591 ~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~--E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~ 668 (769)
T PF05911_consen 591 KKELEEELEKLESEKEELEMELASCQDQLESLKNQLKES--EQKLEELQSELESAKESNSLAETQLKAMKESYESLETRL 668 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHH-HHHHHHHHH-HHHHHHhHHHH
Q psy1409 138 KSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTV-LALLQTAAS-EIEEESEKVPE 211 (320)
Q Consensus 138 ~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l-~~~Lq~a~~-eaEeeSE~lae 211 (320)
..+=..+-.....+..+..+|...-..-..+...|..++.++.......+...+ -.-++..-. ++-..++.||+
T Consensus 669 ~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAE 744 (769)
T PF05911_consen 669 KDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAE 744 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHH
No 242
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=36.99 E-value=5.3e+02 Score=27.25 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=24.4
Q ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhhc--CCHHHHHH
Q psy1409 56 AEYNLSQEEALLEKKSQLLDLNEQLTQL------SKSVESKVELIKSHKNN--VSTDTVLA 108 (320)
Q Consensus 56 Ae~NL~~ep~L~elr~~l~~~~~el~~l------~~~~~~~~~~~~~~~~~--~Sp~~Ll~ 108 (320)
++.+|.-.-..++++..+.+..+...+. +..+++..++.+++... -+|.+|..
T Consensus 156 ~~~~L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~ 216 (555)
T TIGR03545 156 KGEDLKTVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQK 216 (555)
T ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHH
Confidence 3444444444444444444333333321 33455555555555554 45555554
No 243
>KOG4761|consensus
Probab=36.56 E-value=1.5e+02 Score=28.19 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=14.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q psy1409 286 PGYPVSGGGMPLPHIQMTPYPQL 308 (320)
Q Consensus 286 ~pyp~~~~~mp~p~~~~~~yp~~ 308 (320)
+.+|.-++||+-||+.-+||-..
T Consensus 222 pg~pn~~PG~vPpgarFdP~gP~ 244 (266)
T KOG4761|consen 222 PGLPNLPPGAVPPGARFDPFGPI 244 (266)
T ss_pred CCCCCCCCCCCCCCCcCCCCCCC
Confidence 45566666777667766666543
No 244
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=36.51 E-value=6.1e+02 Score=27.80 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhHHHHHH-----hcCCCC
Q psy1409 171 SVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEF-----LNGTID 219 (320)
Q Consensus 171 ~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~F-----L~G~id 219 (320)
.+..+++.+..+... -.-....|..|-.+.-.-||.||.-+ .+|..+
T Consensus 420 ri~~LE~ELr~l~~~--A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cNgeTP 471 (717)
T PF09730_consen 420 RISELEKELRALSKL--AGESQGSLNSAQDELVTFSEELAQLYHHVCMCNGETP 471 (717)
T ss_pred HHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 444444444443222 22234556667777777788887755 356554
No 245
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=36.40 E-value=1.7e+02 Score=24.06 Aligned_cols=35 Identities=26% Similarity=0.140 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy1409 37 LTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKS 71 (320)
Q Consensus 37 ~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~ 71 (320)
++.++......++.+|-.|--.|-.+..+|.+...
T Consensus 23 ~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 23 ELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777778888888888888888888888876544
No 246
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=35.78 E-value=4.9e+02 Score=26.54 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1409 64 EALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHK 98 (320)
Q Consensus 64 p~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~ 98 (320)
.++.+.|.++..--+++..+.+.+..+..++..++
T Consensus 123 ~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~ 157 (499)
T COG4372 123 QELAAARQNLAKAQQELARLTKQAQDLQTRLKTLA 157 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555555544443
No 247
>KOG3647|consensus
Probab=35.75 E-value=4.2e+02 Score=25.70 Aligned_cols=50 Identities=12% Similarity=0.020 Sum_probs=30.8
Q ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHH
Q psy1409 58 YNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVL 107 (320)
Q Consensus 58 ~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll 107 (320)
.|-.-+|+-..-|+.|..+.+|++...+---++-++---+++.+|.+.+.
T Consensus 40 ~~~d~~~~~~q~~~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~~~~~ 89 (338)
T KOG3647|consen 40 ADNDEEDQRDQYRSLIGDKIEELRKARELATDLTQRGTTICEMLSKELLH 89 (338)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 45567777788888888888888776654444444444444444444443
No 248
>KOG1830|consensus
Probab=35.66 E-value=1.2e+02 Score=31.02 Aligned_cols=20 Identities=10% Similarity=0.189 Sum_probs=10.9
Q ss_pred HHhccCCCCCCCCCCCCCCC
Q psy1409 247 MLTKRNSFGSPTHNGVGGHN 266 (320)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~ 266 (320)
+.+=+..++.|+.+.+.+..
T Consensus 299 ~~rPt~pPP~ppl~~~~g~~ 318 (518)
T KOG1830|consen 299 VVRPTQPPPPPPLDSPPGPD 318 (518)
T ss_pred CCCCCCCCCCCCCCCCCCCC
Confidence 44446666655555555544
No 249
>KOG1962|consensus
Probab=34.89 E-value=3.8e+02 Score=24.92 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=33.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy1409 140 LAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNV 186 (320)
Q Consensus 140 LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~ 186 (320)
+-+.|.+...+++.++.++..+-.++..+...+..+.++.+.+..-|
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Ey 195 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEY 195 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 44456666777777777777777777777777777777777765554
No 250
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=34.72 E-value=2.8e+02 Score=23.35 Aligned_cols=39 Identities=18% Similarity=0.128 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Q psy1409 150 ALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVST 188 (320)
Q Consensus 150 ~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp 188 (320)
.+.....++.....++......++........+.....+
T Consensus 140 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (213)
T cd00176 140 SVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHP 178 (213)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCCC
Confidence 333343333344444444444444444444444444433
No 251
>KOG0964|consensus
Probab=34.34 E-value=7.6e+02 Score=28.28 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1409 63 EEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSH 97 (320)
Q Consensus 63 ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~ 97 (320)
.-..+.++.++.....+...+.+.+.-+.+.+..+
T Consensus 719 ~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i 753 (1200)
T KOG0964|consen 719 KREHEKLKRELNTIKGEKSRVQESLEPKGKELEEI 753 (1200)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHH
Confidence 33444555555555555555555555555555544
No 252
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=34.22 E-value=2.9e+02 Score=23.43 Aligned_cols=32 Identities=13% Similarity=0.218 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 151 LLEKKSQLLDLNEQLTQLSKSVESKVELIKSH 182 (320)
Q Consensus 151 Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~ 182 (320)
+.+.+..+...-.++..+...+..+..++..+
T Consensus 91 V~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 91 VTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555555554444
No 253
>PRK11032 hypothetical protein; Provisional
Probab=34.06 E-value=3.3e+02 Score=24.04 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=20.9
Q ss_pred HHHHhcCCCCHHHHHHHhhHHH----HHHHHhHHHHHHHHHHH
Q psy1409 210 PEEFLNGTIDVDKFLETFTPKR----ILMHLRRIKADKMAEML 248 (320)
Q Consensus 210 ae~FL~G~idv~~Fl~~f~~~R----~~~h~Rk~K~e~l~~~~ 248 (320)
...||.. |+.+|...|-+.. .-.+.+-++.-.|..+.
T Consensus 51 v~~ylkR--DL~ef~~~~~~~~~~~~~s~~~~~i~~slw~~L~ 91 (160)
T PRK11032 51 ITRAVRR--DLEEFARSYEESKEEFSDSVFMRVIKESLWQELA 91 (160)
T ss_pred HHHHHHH--HHHHHHHHHHhccccccccHHHHHHHHHHHHHHH
Confidence 4456655 6888888766642 23445555555555443
No 254
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=33.89 E-value=5.9e+02 Score=26.89 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q psy1409 78 EQLTQLSKSVESKVELIKSHKNN 100 (320)
Q Consensus 78 ~el~~l~~~~~~~~~~~~~~~~~ 100 (320)
.+.++++..++++..+.++....
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~ 186 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKD 186 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666666666666665544443
No 255
>PHA03190 UL14 tegument protein; Provisional
Probab=33.87 E-value=3.7e+02 Score=24.52 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=15.3
Q ss_pred HHHHHHHHHhc--cCCCCCCCCCCCCCCCCC
Q psy1409 240 KADKMAEMLTK--RNSFGSPTHNGVGGHNGG 268 (320)
Q Consensus 240 K~e~l~~~~~~--~~~~~~~~~~~~~~~~~~ 268 (320)
-.++|..|+-. +...-.|.|..|++.+.|
T Consensus 145 de~LL~kW~Le~ap~~~~~~~~~~~~~~~~~ 175 (196)
T PHA03190 145 EDDLLLKWQLEGANPPSLLPIPHAPSGESRG 175 (196)
T ss_pred HHHHHHHHHHccCCCCccCCCCCCCCccccC
Confidence 45667777654 333334555555555444
No 256
>PHA02562 46 endonuclease subunit; Provisional
Probab=33.82 E-value=5.3e+02 Score=26.33 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 147 QEEALLEKKSQLLDLNEQLTQLSKSVESKVEL 178 (320)
Q Consensus 147 ~ep~Leelr~ql~~~y~el~~L~~~~~~k~~k 178 (320)
.+..+...+..+.....+...++.....+..+
T Consensus 342 l~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~ 373 (562)
T PHA02562 342 LKNKISTNKQSLITLVDKAKKVKAAIEELQAE 373 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444445555555555444
No 257
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=33.74 E-value=52 Score=22.88 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 46 EMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKS 86 (320)
Q Consensus 46 e~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~ 86 (320)
+.....|++||+.|-..--++.++...+.....|--.+.+.
T Consensus 3 ~k~~~qn~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~ 43 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSALSIKIQELENEVSKLLNENVNLREL 43 (46)
T ss_dssp ---------------------------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHH
Confidence 44567899999999998888888888888877776666543
No 258
>KOG2264|consensus
Probab=33.49 E-value=2.9e+02 Score=29.61 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHH
Q psy1409 39 TESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTD 104 (320)
Q Consensus 39 k~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~ 104 (320)
.++...|.+|-. ++++-|+ .++++|..+..+-.||.+|+-..++-+.+++++.+...|.
T Consensus 96 ~ele~krqel~s---eI~~~n~----kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pk 154 (907)
T KOG2264|consen 96 TELEVKRQELNS---EIEEINT----KIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPK 154 (907)
T ss_pred HHHHHHHHHHHh---HHHHHHH----HHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCc
Confidence 333444444433 3455453 6888888888888999999999999888888887766543
No 259
>KOG2199|consensus
Probab=33.35 E-value=5.4e+02 Score=26.30 Aligned_cols=14 Identities=7% Similarity=0.200 Sum_probs=5.7
Q ss_pred hhHHHHHHHHHhhH
Q psy1409 125 ESNEQKEMLIASNK 138 (320)
Q Consensus 125 ~l~~~~e~ll~~N~ 138 (320)
+|...+++-|.+++
T Consensus 168 diaKAi~lSL~E~~ 181 (462)
T KOG2199|consen 168 DIAKAIELSLKEQE 181 (462)
T ss_pred HHHHHHHhhHHHHh
Confidence 34444444444433
No 260
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=32.81 E-value=2e+02 Score=21.11 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHH
Q psy1409 66 LLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVL 107 (320)
Q Consensus 66 L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll 107 (320)
+..++.++.....++.+++...+++..+.+.+.. +++.+.
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~--~~~~ie 58 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKN--DPDYIE 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHH
Confidence 4445555555555566666655555555554411 444444
No 261
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.41 E-value=6.6e+02 Score=27.03 Aligned_cols=54 Identities=26% Similarity=0.278 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhHHHHHHhcCCCCHHH-----------H-HHHhhHHH---------HHHHHhHHHHHHHHHHHhc
Q psy1409 197 TAASEIEEESEKVPEEFLNGTIDVDK-----------F-LETFTPKR---------ILMHLRRIKADKMAEMLTK 250 (320)
Q Consensus 197 ~a~~eaEeeSE~lae~FL~G~idv~~-----------F-l~~f~~~R---------~~~h~Rk~K~e~l~~~~~~ 250 (320)
.|+--.++.|+..++.|.+++|++-. | +..+-+.| .-.|.|+.|.+-+..++..
T Consensus 570 raii~~~~~s~~A~e~f~~~~iPv~~~~dV~i~~ld~~~vv~~eelr~~~e~~~kr~ee~~r~~k~~~i~riieE 644 (652)
T COG2433 570 RAIIRGEEMSHAAAEEFFKNEIPVLPEGDVQIIRLDEFAVVDSEELRRAIEEWKKRFEERERRQKEEDILRIIEE 644 (652)
T ss_pred ceEEccCccchHHHHHHhhcCCceeecCceEEEEecceEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566689999999998765322 2 22333322 3446666677777766654
No 262
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=32.38 E-value=4e+02 Score=24.49 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=31.7
Q ss_pred HHHHHHHhHHHHHHhcCCCCHHHHHHHhhHHHHHHHHhHHHHHHHHHHHh
Q psy1409 200 SEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRIKADKMAEMLT 249 (320)
Q Consensus 200 ~eaEeeSE~lae~FL~G~idv~~Fl~~f~~~R~~~h~Rk~K~e~l~~~~~ 249 (320)
.....+.|.+........-..+++...|-..|..++.=|.|.=+.+..|+
T Consensus 134 ~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ 183 (202)
T PF06818_consen 134 GSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQ 183 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555544333334677888888888888877777766666665
No 263
>PRK15459 flagella synthesis chaperone protein FlgN; Provisional
Probab=32.32 E-value=3.3e+02 Score=23.45 Aligned_cols=93 Identities=19% Similarity=0.277 Sum_probs=56.8
Q ss_pred CccHHHHhccC--CHHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhh-------ccHHHHHHHHH
Q psy1409 1 MENLESLLEHL--DISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNL-------SQEEALLEKKS 71 (320)
Q Consensus 1 ~~~~~~~L~~l--S~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL-------~~ep~L~elr~ 71 (320)
||++...|..+ .+++|..++..|..+..--. ++-+.++.+.+.|..+++....+.+.=. .-.|.+-..+.
T Consensus 1 M~~L~~~L~q~~~~L~~l~~vL~~Eq~~L~~g~-i~~~~Lq~ite~Ks~lLa~L~~le~~R~~~~~~~~~~~~~la~~Wq 79 (140)
T PRK15459 1 MTRLAEILDQMTAVLNDLKTVMDQEQQHLSMGQ-INGSQLQRITEQKSSLLATLDYLEQQRRKEQNTANSVNDDISQRWQ 79 (140)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 45555555444 56777777777765443322 2112466777777777776665542211 23588888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 72 QLLDLNEQLTQLSKSVESKVELI 94 (320)
Q Consensus 72 ~l~~~~~el~~l~~~~~~~~~~~ 94 (320)
++..+.+.++++....-.+...+
T Consensus 80 ~i~~l~~~~r~lN~~NG~Ll~~h 102 (140)
T PRK15459 80 EITEKTQQLRQLNQHNGWLLEGQ 102 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888877655544443
No 264
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=32.04 E-value=2.2e+02 Score=21.45 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1409 158 LLDLNEQLTQLSKSVESKVELI 179 (320)
Q Consensus 158 l~~~y~el~~L~~~~~~k~~kl 179 (320)
+...|.+...|+.+.+.+.+++
T Consensus 42 l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 42 LGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 265
>KOG4182|consensus
Probab=31.96 E-value=6.4e+02 Score=26.66 Aligned_cols=154 Identities=15% Similarity=0.118 Sum_probs=84.7
Q ss_pred hcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-----------HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH---
Q psy1409 20 VNDEETFNNFTKEATATLTTESNEQKEMLIASNK-----------SLAEYNLSQEEALLEKKSQLLDLNEQLTQLSK--- 85 (320)
Q Consensus 20 l~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~-----------~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~--- 85 (320)
-+|.++..+|+.++. -.++-..+++.++.+ ..|+..+.++..-..++..+.....+++....
T Consensus 30 rddsea~e~~i~dle----~KLQia~eeigaalEEqSggal~rmPRaakd~~~Lq~Da~~Lq~kma~il~el~~aegesa 105 (828)
T KOG4182|consen 30 RDDSEAAEAFIRDLE----AKLQIAIEEIGAALEEQSGGALARMPRAAKDSAALQADAHRLQEKMAAILLELAAAEGESA 105 (828)
T ss_pred cccHHHHHHHHHHHH----HHHHHHHHHHhHHHHHhccchHhhCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH
Confidence 467889999999974 334555555555544 45777888888888888888777777665432
Q ss_pred -------HHHHHHHHHH----HhhhcCCHHHHHHHHHHH-------------------HHHHHhhhhhhhhHHHHHHHHH
Q psy1409 86 -------SVESKVELIK----SHKNNVSTDTVLALLQTA-------------------ASEIEEESETTESNEQKEMLIA 135 (320)
Q Consensus 86 -------~~~~~~~~~~----~~~~~~Sp~~Ll~lLq~a-------------------~~~~eeesE~k~l~~~~e~ll~ 135 (320)
+++.+.++++ .+.+.-....|++-|.|- -+..++..+.-+.++..|++-.
T Consensus 106 dCiAaLaRldn~kQkleaA~esLQdaaGl~nL~a~lED~Fa~gDL~~aadkLaalqkcL~A~~elaefAe~qkQlE~~ed 185 (828)
T KOG4182|consen 106 DCIAALARLDNKKQKLEAAKESLQDAAGLGNLLAELEDGFARGDLKGAADKLAALQKCLHAQEELAEFAERQKQLEDFED 185 (828)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333444433 344444555555554432 2445555665555555555544
Q ss_pred hhHHHHH-----HhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 136 SNKSLAE-----YNLSQEEALL-EKKSQLLDLNEQLTQLSKSVESKVEL 178 (320)
Q Consensus 136 ~N~~LAe-----~NL~~ep~Le-elr~ql~~~y~el~~L~~~~~~k~~k 178 (320)
.-+.+|. .+-..+.+.. +|| ++..++..++.|...|+..+.+
T Consensus 186 RLEAlaqPrltda~a~~ktd~AQd~r-~I~irIgRfkqLelqY~~Vq~k 233 (828)
T KOG4182|consen 186 RLEALAQPRLTDAFAEGKTDQAQDFR-QIFIRIGRFKQLELQYRAVQKK 233 (828)
T ss_pred HHHHHcCchHHHHHHccChHHHHHHH-HHHHHHhhhHHHHHHHHHHHHH
Confidence 4444432 2222222222 222 3334455556666666554433
No 266
>PLN02678 seryl-tRNA synthetase
Probab=31.78 E-value=4.4e+02 Score=27.07 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy1409 70 KSQLLDLNEQLTQLSKSVESKVELIKSHKNNV 101 (320)
Q Consensus 70 r~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~ 101 (320)
=.++...+++.+++..+++.+..+.+.++..+
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I 63 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEV 63 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677778888888888888888888776643
No 267
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=31.47 E-value=4.6e+02 Score=24.91 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHH
Q psy1409 173 ESKVELIKSHKNNVSTDTVLA 193 (320)
Q Consensus 173 ~~k~~kl~~~~~~~sp~~l~~ 193 (320)
+.....+.+....+||..++.
T Consensus 260 ~~~l~~~~~~L~~lsP~~~L~ 280 (319)
T PF02601_consen 260 RQRLERLEARLEALSPLKILK 280 (319)
T ss_pred HHHHHHHHHHHHcCCHHHHHh
Confidence 333444455556667777664
No 268
>KOG4603|consensus
Probab=31.36 E-value=4e+02 Score=24.12 Aligned_cols=103 Identities=11% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHh
Q psy1409 65 ALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYN 144 (320)
Q Consensus 65 ~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~~LAe~N 144 (320)
.|-.+...+....+.++.|+..+.......++++.+++.+.+..-.+.-..+.-.-++. .
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~er--------------------l 139 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRER--------------------L 139 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH--------------------H
Q ss_pred hhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy1409 145 LSQEEALLEKKSQ-LLDLNEQLTQLSKSVESKVELIKSHKNNVS 187 (320)
Q Consensus 145 L~~ep~Leelr~q-l~~~y~el~~L~~~~~~k~~kl~~~~~~~s 187 (320)
-..+.-.....-+ ..+-|.+....+..|+....-..++...++
T Consensus 140 ~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~krmf~ei~d~~~ 183 (201)
T KOG4603|consen 140 KNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKRMFREIIDKLL 183 (201)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 269
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=31.18 E-value=2.4e+02 Score=21.63 Aligned_cols=52 Identities=13% Similarity=0.273 Sum_probs=34.9
Q ss_pred cCCHHHHHHHHHHHH-HHH-----HHHHhHHHHHH---hcCCCCHHHHHHHhhHHHHHHHH
Q psy1409 185 NVSTDTVLALLQTAA-SEI-----EEESEKVPEEF---LNGTIDVDKFLETFTPKRILMHL 236 (320)
Q Consensus 185 ~~sp~~l~~~Lq~a~-~ea-----EeeSE~lae~F---L~G~idv~~Fl~~f~~~R~~~h~ 236 (320)
..+.+-+...|.... ... +++.+.+-..| -+|.|+.++|+.-+....+-||.
T Consensus 26 ~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~~~~~ 86 (88)
T cd05030 26 TLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVAAHE 86 (88)
T ss_pred cCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHHhcc
Confidence 345666666665322 112 55566666555 36899999999998888888885
No 270
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=31.14 E-value=2.5e+02 Score=21.96 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH--H-HHHhHHHHHH---hcCCCCHHHHHHHhhHHHHHHH
Q psy1409 162 NEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEI--E-EESEKVPEEF---LNGTIDVDKFLETFTPKRILMH 235 (320)
Q Consensus 162 y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~ea--E-eeSE~lae~F---L~G~idv~~Fl~~f~~~R~~~h 235 (320)
...++...+.|+.+ .-.+..+.+.+...|+....+. + ++.++|-..+ -+|.|+.++|+.-....-.-||
T Consensus 7 i~~l~~~F~~fd~~-----~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~~~ 81 (89)
T cd05022 7 IETLVSNFHKASVK-----GGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKAVK 81 (89)
T ss_pred HHHHHHHHHHHhCC-----CCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 33444444444432 2334456677777766633221 2 4566665543 3679999999988888877777
Q ss_pred HhH
Q psy1409 236 LRR 238 (320)
Q Consensus 236 ~Rk 238 (320)
.-+
T Consensus 82 ~~~ 84 (89)
T cd05022 82 GEK 84 (89)
T ss_pred HHh
Confidence 643
No 271
>PF13514 AAA_27: AAA domain
Probab=31.12 E-value=8.4e+02 Score=27.80 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhcCCHHHHHHHHHHHHHHHHhh-------hhhhhhHHHH
Q psy1409 64 EALLEKKSQLLDLNEQLTQLSKSVESKVELIKS------HKNNVSTDTVLALLQTAASEIEEE-------SETTESNEQK 130 (320)
Q Consensus 64 p~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~------~~~~~Sp~~Ll~lLq~a~~~~eee-------sE~k~l~~~~ 130 (320)
..+..++.++...-.++..+.+.++....+... +....+|..+...|..-....+.. ..+..+..+.
T Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ri~~~~~~~ 759 (1111)
T PF13514_consen 680 EELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEELREALAEIRELRRRIEQMEADL 759 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444442 445567888877665443222222 2334455555
Q ss_pred HHHHHhhHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhH
Q psy1409 131 EMLIASNKSLAEYNLS--QEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEK 208 (320)
Q Consensus 131 e~ll~~N~~LAe~NL~--~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~eaEeeSE~ 208 (320)
+.+......|+...-. ...........+...+...+.....++.+..++..+... +..+...+...+.+-+.
T Consensus 760 ~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~------~~~~~~~l~~~~~~l~~ 833 (1111)
T PF13514_consen 760 AAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEE------LEQAEEELEELEAELAE 833 (1111)
T ss_pred HHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 5555555555544221 011111223333344555555555555555555544222 23344444444444444
Q ss_pred HHHHHhcCCCCHHHHHHHh
Q psy1409 209 VPEEFLNGTIDVDKFLETF 227 (320)
Q Consensus 209 lae~FL~G~idv~~Fl~~f 227 (320)
|... .|--+.++|....
T Consensus 834 L~~~--a~~~~~e~l~~~~ 850 (1111)
T PF13514_consen 834 LLEQ--AGVEDEEELREAE 850 (1111)
T ss_pred HHHh--ccCCCHHHHHHHH
Confidence 4443 2333566665543
No 272
>KOG0977|consensus
Probab=31.10 E-value=6.6e+02 Score=26.60 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHhHHH
Q psy1409 187 STDTVLALLQTAASEIEEESEKVP 210 (320)
Q Consensus 187 sp~~l~~~Lq~a~~eaEeeSE~la 210 (320)
..+...+.|+.|+.+.=.+-|.+.
T Consensus 239 ~r~~F~~eL~~Ai~eiRaqye~~~ 262 (546)
T KOG0977|consen 239 NREYFKNELALAIREIRAQYEAIS 262 (546)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666555544443
No 273
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=31.01 E-value=6.4e+02 Score=26.41 Aligned_cols=122 Identities=17% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q psy1409 129 QKEMLIASNKSLAEYNLSQEEALLEKKSQ----LLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEE 204 (320)
Q Consensus 129 ~~e~ll~~N~~LAe~NL~~ep~Leelr~q----l~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~eaEe 204 (320)
+++++-.....|.++--+.+.++.+.-.. +...+...+.|..+.+.+.+..+++...-..+.+...|..++.+...
T Consensus 8 ~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~ 87 (593)
T PF06248_consen 8 SKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQE 87 (593)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q ss_pred HHhHHHH-----HHhcCCCCHHHHHHHhhHHHHHHHHhHH--HHHHHHHHHhc
Q psy1409 205 ESEKVPE-----EFLNGTIDVDKFLETFTPKRILMHLRRI--KADKMAEMLTK 250 (320)
Q Consensus 205 eSE~lae-----~FL~G~idv~~Fl~~f~~~R~~~h~Rk~--K~e~l~~~~~~ 250 (320)
-..+++. .+++.=..+++-+..+...+.-.+.-.+ ..+.+..++..
T Consensus 88 L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~ 140 (593)
T PF06248_consen 88 LKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDD 140 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
No 274
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=30.92 E-value=2.3e+02 Score=23.43 Aligned_cols=62 Identities=21% Similarity=0.144 Sum_probs=0.0
Q ss_pred HhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH----------------HHHHHHHHHHH
Q psy1409 17 KELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLE----------------KKSQLLDLNEQ 79 (320)
Q Consensus 17 ~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~e----------------lr~~l~~~~~e 79 (320)
++|-+-=..|..-+..+-. ++.++......++.+|-.|--.|--++.+|.+ .+..|+..|++
T Consensus 4 ~elfd~l~~le~~l~~l~~-el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~~~~~~~~~~~~~~g~~NL~~LY~E 81 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLK-ELGALKKQLAELLEENTALRLENDKLRERLEELEAEEPAKEKKKKEGEGKDNLARLYQE 81 (110)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHc
No 275
>KOG0978|consensus
Probab=30.53 E-value=7.5e+02 Score=27.04 Aligned_cols=12 Identities=25% Similarity=0.257 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q psy1409 42 NEQKEMLIASNK 53 (320)
Q Consensus 42 ~~~re~ll~~N~ 53 (320)
...++.+...|+
T Consensus 366 ~~~k~el~~~~~ 377 (698)
T KOG0978|consen 366 LVAKSELLKTNE 377 (698)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 276
>KOG0993|consensus
Probab=30.34 E-value=4e+02 Score=27.35 Aligned_cols=47 Identities=19% Similarity=0.180 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhhhhh
Q psy1409 77 NEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESET 123 (320)
Q Consensus 77 ~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~~eeesE~ 123 (320)
-.+..++...++.+......+.+..|...-..-|..+.....+.++.
T Consensus 106 eqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eK 152 (542)
T KOG0993|consen 106 EQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEK 152 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHH
Confidence 34556666666667777776666666655555566666666666666
No 277
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=30.32 E-value=3.8e+02 Score=27.07 Aligned_cols=53 Identities=13% Similarity=0.199 Sum_probs=34.5
Q ss_pred HHhhHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy1409 134 IASNKSLAEYNLSQEE-ALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNV 186 (320)
Q Consensus 134 l~~N~~LAe~NL~~ep-~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~ 186 (320)
+..|...-+.|+.+.- .+.....++.....+.+++..+.+.+..+.+.++...
T Consensus 7 ir~n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i 60 (418)
T TIGR00414 7 LRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQI 60 (418)
T ss_pred HHhCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555543 1121356666888888888888888888888877665
No 278
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=30.23 E-value=4.4e+02 Score=24.26 Aligned_cols=59 Identities=19% Similarity=0.169 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHhH---HHHHHhcCCCCHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc
Q psy1409 190 TVLALLQTAASEIEEESEK---VPEEFLNGTIDVDKFLETFTPKRILMHLRRIKADKMAEMLTK 250 (320)
Q Consensus 190 ~l~~~Lq~a~~eaEeeSE~---lae~FL~G~idv~~Fl~~f~~~R~~~h~Rk~K~e~l~~~~~~ 250 (320)
.+-.-|+.|-.+-++.+|. ....|++.+.+--..|..|.+..--||.++. +.|.++..+
T Consensus 146 ~~eeElr~Ae~kfees~E~a~~~M~~i~~~e~e~~~~L~~lv~AQl~Yh~q~~--e~L~~l~~~ 207 (215)
T cd07593 146 RLEEELRRAKAKYEESSEDVEARMVAIKESEADQYRDLTDLLDAELDYHQQSL--DVLREVRQS 207 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHh
Confidence 4555555565555555544 3457788778888889999999999998764 567776665
No 279
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=30.07 E-value=7.2e+02 Score=26.68 Aligned_cols=94 Identities=23% Similarity=0.248 Sum_probs=46.0
Q ss_pred hhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHhhcCCHHHH
Q psy1409 119 EESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKK---SQLLDLNEQ----LTQLSKSVESKVELIKSHKNNVSTDTV 191 (320)
Q Consensus 119 eesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr---~ql~~~y~e----l~~L~~~~~~k~~kl~~~~~~~sp~~l 191 (320)
..+..++|......+-..-..|...|++....|..-. .++..++.+ +..++..+..|.+.+..+.. ..+.+
T Consensus 158 AlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~--q~dq~ 235 (617)
T PF15070_consen 158 ALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQE--QRDQY 235 (617)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHH
Confidence 4555666666666666666666666655544443221 122233332 33344444444444444433 33445
Q ss_pred HHHHHHH---HHHHHHHHhHHHHHHh
Q psy1409 192 LALLQTA---ASEIEEESEKVPEEFL 214 (320)
Q Consensus 192 ~~~Lq~a---~~eaEeeSE~lae~FL 214 (320)
+..|+.. ....-.+.+.|..+++
T Consensus 236 ~~~Lqqy~a~~q~l~~e~e~L~~q~l 261 (617)
T PF15070_consen 236 LGHLQQYVAAYQQLASEKEELHKQLL 261 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555533 3445556666665543
No 280
>PRK10869 recombination and repair protein; Provisional
Probab=30.03 E-value=6.7e+02 Score=26.29 Aligned_cols=148 Identities=14% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHhhhcCHHHHHHHHHhccHHHHHHHHH--------HHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHHHH
Q psy1409 13 ISELKELVNDEETFNNFTKEATATLTTESNE--------QKEMLIASNKSLAEYN---LSQEEALLEKKSQLLDLNEQLT 81 (320)
Q Consensus 13 ~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~--------~re~ll~~N~~LAe~N---L~~ep~L~elr~~l~~~~~el~ 81 (320)
+++-.+.|++-+++.+.+... ...+.. ....++..-..+++.. -..-..|++....|.+...++.
T Consensus 210 L~~e~~~L~n~e~i~~~~~~~----~~~L~~~~~~~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~ 285 (553)
T PRK10869 210 IDEEYKRLANSGQLLTTSQNA----LQLLADGEEVNILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELR 285 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhcCCCcccHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH----------HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHH
Q psy1409 82 QLS----------KSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEAL 151 (320)
Q Consensus 82 ~l~----------~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~L 151 (320)
... +..++....+..+..+|.+ ++-+++.-......+..+..+....++.|-.+-..+.+.-...-..|
T Consensus 286 ~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~-~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~L 364 (553)
T PRK10869 286 HYLDRLDLDPNRLAELEQRLSKQISLARKHHV-SPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKL 364 (553)
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q psy1409 152 LEKKSQLLDLNEQL 165 (320)
Q Consensus 152 eelr~ql~~~y~el 165 (320)
...|.+....+.+.
T Consensus 365 S~~R~~aA~~l~~~ 378 (553)
T PRK10869 365 HQSRQRYAKELAQL 378 (553)
T ss_pred HHHHHHHHHHHHHH
No 281
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=29.93 E-value=1.2e+02 Score=27.26 Aligned_cols=37 Identities=14% Similarity=0.263 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1409 62 QEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHK 98 (320)
Q Consensus 62 ~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~ 98 (320)
+...|.+.|.+|.++.+|+++.+.-.+.-..+++++.
T Consensus 52 LkNeLREVREELkEKmeEIKQIKdiMDKDFDKL~EFV 88 (205)
T PF15079_consen 52 LKNELREVREELKEKMEEIKQIKDIMDKDFDKLHEFV 88 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3456777777788888887777766655555555554
No 282
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=29.91 E-value=2e+02 Score=21.03 Aligned_cols=38 Identities=13% Similarity=0.273 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCH
Q psy1409 66 LLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVST 103 (320)
Q Consensus 66 L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp 103 (320)
+..+|.+..+..+.+..+.+.+.++..-|+-++..+.|
T Consensus 16 i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~~iNP 53 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENVKDLLSLYEVVSNQINP 53 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 55666666666666667777776666666666555544
No 283
>KOG4592|consensus
Probab=29.85 E-value=1.2e+02 Score=32.58 Aligned_cols=10 Identities=50% Similarity=0.766 Sum_probs=5.3
Q ss_pred CCCC---CCCCCC
Q psy1409 309 PQMP---TPSYPF 318 (320)
Q Consensus 309 ~~~~---~~~~~~ 318 (320)
|.|| ..||+|
T Consensus 239 pqmPlQ~gm~~~~ 251 (728)
T KOG4592|consen 239 PQMPLQQGMPHNF 251 (728)
T ss_pred ccChhhcCCCCCC
Confidence 6666 245554
No 284
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=29.79 E-value=1.5e+02 Score=22.92 Aligned_cols=58 Identities=10% Similarity=0.005 Sum_probs=33.3
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 26 FNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSV 87 (320)
Q Consensus 26 l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~ 87 (320)
|++=+.+|+. .|+.+-...++=..+=..-|+-.-.++|.|..+ |.+-|.-.+.|.++|
T Consensus 16 L~~~l~dmd~-kvk~mlklieedgdSfakrAEmyy~kRp~Li~~---vee~yr~YrsLAerY 73 (74)
T PF07765_consen 16 LQENLSDMDE-KVKAMLKLIEEDGDSFAKRAEMYYKKRPELISL---VEEFYRSYRSLAERY 73 (74)
T ss_pred HHHHHHHHHH-HHHHHHHHhccCcchHHHhhHHHhcccHHHHHH---HHHHHHHHHHHHHhc
Confidence 3444455542 566655545443344445578888899988765 444455555555555
No 285
>KOG4592|consensus
Probab=29.65 E-value=1.1e+02 Score=32.62 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=7.5
Q ss_pred CCCCCCCCCCCCCC
Q psy1409 285 GPGYPVSGGGMPLP 298 (320)
Q Consensus 285 ~~pyp~~~~~mp~p 298 (320)
+.+-|++.+|-++|
T Consensus 219 ~s~~p~g~~~~~vP 232 (728)
T KOG4592|consen 219 SSQQPNGIGGNRVP 232 (728)
T ss_pred CccCccCCCCCCCC
Confidence 34444555555666
No 286
>KOG0978|consensus
Probab=29.62 E-value=7.7e+02 Score=26.93 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCCCCHH
Q psy1409 192 LALLQTAASEIEEESEKVPEEFLNGTIDVD 221 (320)
Q Consensus 192 ~~~Lq~a~~eaEeeSE~lae~FL~G~idv~ 221 (320)
+..||..+.+.+..-+.|-.+.-+-.++++
T Consensus 568 ~~~Lq~~~ek~~~~le~i~~~~~e~~~ele 597 (698)
T KOG0978|consen 568 LEDLQIELEKSEAKLEQIQEQYAELELELE 597 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554444443333333
No 287
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=29.61 E-value=6.1e+02 Score=25.75 Aligned_cols=131 Identities=19% Similarity=0.107 Sum_probs=0.0
Q ss_pred hhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Q psy1409 19 LVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKS-VESKVELIKSH 97 (320)
Q Consensus 19 Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~-~~~~~~~~~~~ 97 (320)
|..|-..+..+...||-.....+...-..|...+.+.|+.| .+|...|-++.....-..+++++ -.+-..+...+
T Consensus 261 l~~el~siRr~Cd~lP~~m~tKveelar~Lr~~I~~VarEN----s~LqrQKle~e~~l~a~qeakek~~KEAqareakl 336 (442)
T PF06637_consen 261 LGPELESIRRTCDHLPKIMTTKVEELARSLRAGIERVAREN----SDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKL 336 (442)
T ss_pred CcchHHHHHHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHH
Q psy1409 98 KNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLE 153 (320)
Q Consensus 98 ~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Lee 153 (320)
-..++.++-++|...++-.-|-++=.++|..-+-.+-.-+.++|-.|-+...-+..
T Consensus 337 qaec~rQ~qlaLEEKaaLrkerd~L~keLeekkreleql~~q~~v~~saLdtCika 392 (442)
T PF06637_consen 337 QAECARQTQLALEEKAALRKERDSLAKELEEKKRELEQLKMQLAVKTSALDTCIKA 392 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
No 288
>KOG4796|consensus
Probab=29.55 E-value=1.8e+02 Score=30.72 Aligned_cols=88 Identities=10% Similarity=0.160 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCHHHHHHHhhHHHH
Q psy1409 153 EKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRI 232 (320)
Q Consensus 153 elr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~FL~G~idv~~Fl~~f~~~R~ 232 (320)
.-+.+|...|.|+++|.+.+.....++.++.... ..+|.....+-+.--++|...|-.=+.| -.|.+.+.
T Consensus 505 ~Yk~dF~~eY~EYreLharve~vs~rF~~Lea~L-----~srls~gS~ey~~i~~qI~qEYeki~~d-----p~y~eeK~ 574 (604)
T KOG4796|consen 505 RYKKDFEAEYDEYRELHARVETVSRRFRQLEAQL-----KSRLSPGSPEYKQIEKQILQEYEKIRKD-----PNYMEEKQ 574 (604)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccCCCCCcHHHHHHHHHHHHHHhhcC-----ccHHHHHH
Confidence 4455666778888888777766666655543221 1122222222233334444444322223 35888888
Q ss_pred HHHHhHHHHHHHHHHHhc
Q psy1409 233 LMHLRRIKADKMAEMLTK 250 (320)
Q Consensus 233 ~~h~Rk~K~e~l~~~~~~ 250 (320)
.||.-+-|+..++.++..
T Consensus 575 RceYLhsKLaHIK~lI~e 592 (604)
T KOG4796|consen 575 RCEYLHSKLAHIKTLIGE 592 (604)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999988899999998865
No 289
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=29.36 E-value=3.3e+02 Score=22.56 Aligned_cols=25 Identities=0% Similarity=0.142 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 151 LLEKKSQLLDLNEQLTQLSKSVESK 175 (320)
Q Consensus 151 Leelr~ql~~~y~el~~L~~~~~~k 175 (320)
...++..|.....++..+...|..+
T Consensus 90 ~~~L~~~f~~~m~~fq~~Q~~~~~~ 114 (151)
T cd00179 90 HSGLSKKFVEVMTEFNKAQRKYRER 114 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455544444443
No 290
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=29.35 E-value=2.1e+02 Score=29.05 Aligned_cols=80 Identities=24% Similarity=0.292 Sum_probs=47.8
Q ss_pred hhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q psy1409 123 TTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLL-DLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASE 201 (320)
Q Consensus 123 ~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~-~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~e 201 (320)
.+++++..++=++.|+.||++-++-|..+. ..+. +..++.-+--... +-+..+.++-.+. +..|.+++.
T Consensus 274 lrelnqrL~~EL~~~raLaeqListEEsiR---k~vARELHDeIGQnITAI----r~Qa~ivkR~~~~---~q~kqaas~ 343 (497)
T COG3851 274 LRELNQRLQKELARNRALAEQLISTEESIR---KDVARELHDEIGQNITAI----RTQAGIVKRAADN---AQVKQAASL 343 (497)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHH---HHHHHHHHHHhcchHHHH----HHHHHHHHhccCC---HhHHhHHHH
Confidence 688899999999999999999999886554 2321 2222221111111 1222232222111 344568888
Q ss_pred HHHHHhHHHHH
Q psy1409 202 IEEESEKVPEE 212 (320)
Q Consensus 202 aEeeSE~lae~ 212 (320)
.|+-|-.|.+.
T Consensus 344 Ie~LslrI~~s 354 (497)
T COG3851 344 IEQLSLRIYDS 354 (497)
T ss_pred HHHHHHHHHHH
Confidence 88888888764
No 291
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=29.29 E-value=2.9e+02 Score=21.91 Aligned_cols=59 Identities=20% Similarity=0.165 Sum_probs=37.7
Q ss_pred HHHhccCCHHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 5 ESLLEHLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLS 84 (320)
Q Consensus 5 ~~~L~~lS~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~ 84 (320)
..+|+++|.+||.+.+.+- +.+++.=.-..|-..+..-.++...|..++....-+++-.
T Consensus 2 ~~elR~lS~eEL~e~L~el---------------------kkELf~LR~q~atgql~n~~~ir~iRR~IARilTvl~Ek~ 60 (87)
T PRK00461 2 FKELRKKSVEELEKLVIEL---------------------KAELFTLRFKNATGSLDQTHKIKEIRKDIARILTILNERE 60 (87)
T ss_pred hHHHHhCCHHHHHHHHHHH---------------------HHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888887654332 3333333334455677777788888888888776666543
No 292
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=29.04 E-value=8.3e+02 Score=27.10 Aligned_cols=27 Identities=19% Similarity=0.014 Sum_probs=10.2
Q ss_pred HHHHHHHhhHHHHHHhhhhhHHHHHHH
Q psy1409 129 QKEMLIASNKSLAEYNLSQEEALLEKK 155 (320)
Q Consensus 129 ~~e~ll~~N~~LAe~NL~~ep~Leelr 155 (320)
.++.+......+..........+.+..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~e~~ 416 (908)
T COG0419 390 AIQELKEELAELSAALEEIQEELEELE 416 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 293
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=28.86 E-value=4.1e+02 Score=24.98 Aligned_cols=46 Identities=15% Similarity=0.097 Sum_probs=34.0
Q ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1409 54 SLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKN 99 (320)
Q Consensus 54 ~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~ 99 (320)
+|..+--.++.++.+||.++.+..-++.+++++..++...++....
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556667778888888888888888888887777777776544
No 294
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=28.82 E-value=2.3e+02 Score=20.65 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Q psy1409 148 EEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVST 188 (320)
Q Consensus 148 ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp 188 (320)
+..+..+|++..+....+..+.+.++.+..-|.-++..++|
T Consensus 13 ~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~~iNP 53 (55)
T PF05377_consen 13 ESSINTVKKENEEISESVEKIEENVKDLLSLYEVVSNQINP 53 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 33466666666666666666666776666666666666655
No 295
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=28.68 E-value=2.6e+02 Score=21.08 Aligned_cols=57 Identities=19% Similarity=0.102 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 125 ESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKS 181 (320)
Q Consensus 125 ~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~ 181 (320)
.+..-.+.|+.-...|-..|......+..+..+-....+........++....++..
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344455556666666666666555555555544444444444444444444444443
No 296
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=28.63 E-value=5.6e+02 Score=24.96 Aligned_cols=29 Identities=10% Similarity=0.042 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Q psy1409 38 TTESNEQKEMLIASNKSLAEYNLSQEEALL 67 (320)
Q Consensus 38 vk~~~~~re~ll~~N~~LAe~NL~~ep~L~ 67 (320)
|..+..+|..+...-+.+++ |-.--|.|.
T Consensus 204 l~~lk~eR~~l~~~Lk~~~~-~DDI~~~ll 232 (339)
T cd09238 204 LEALGNERAGIEDMMKALKR-NDNILAKVM 232 (339)
T ss_pred HHHHHHHHHHHHHHHHHHhh-cCCcHHHHH
Confidence 45555666665555555554 444455555
No 297
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=28.57 E-value=7.1e+02 Score=26.12 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCHHHHHHHh
Q psy1409 148 EEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETF 227 (320)
Q Consensus 148 ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~FL~G~idv~~Fl~~f 227 (320)
...|..++..=...-..+..+.........+++...=.=-|+..+..+..+..+.+.-++.| -...|+++..-..-
T Consensus 399 ~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L----~~~pinm~~v~~~l 474 (560)
T PF06160_consen 399 NESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDEL----NQVPINMDEVNKQL 474 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHH----hcCCcCHHHHHHHH
Confidence 33333333333333333333333333333333332222344555555555554444443332 23345554443333
Q ss_pred hH
Q psy1409 228 TP 229 (320)
Q Consensus 228 ~~ 229 (320)
..
T Consensus 475 ~~ 476 (560)
T PF06160_consen 475 EE 476 (560)
T ss_pred HH
Confidence 33
No 298
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=28.50 E-value=3.5e+02 Score=23.85 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=23.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 143 YNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELI 179 (320)
Q Consensus 143 ~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl 179 (320)
.+-..+.++++++.++..+-.++..|+.+.+.+.+.+
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445566677777777776666666666666665544
No 299
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=28.23 E-value=2.6e+02 Score=21.06 Aligned_cols=38 Identities=13% Similarity=0.015 Sum_probs=26.0
Q ss_pred hhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHH
Q psy1409 121 SETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQL 158 (320)
Q Consensus 121 sE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql 158 (320)
.+.+.+..+++..+.+-...-..|.....+++.++.++
T Consensus 26 ~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 26 IENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777776677777777777776554
No 300
>PF09888 DUF2115: Uncharacterized protein conserved in archaea (DUF2115); InterPro: IPR019215 This entry represents various hypothetical archaeal proteins, has no known function.
Probab=28.12 E-value=32 Score=30.42 Aligned_cols=12 Identities=42% Similarity=0.736 Sum_probs=7.5
Q ss_pred CCCCCCCCCCCC
Q psy1409 289 PVSGGGMPLPHI 300 (320)
Q Consensus 289 p~~~~~mp~p~~ 300 (320)
|..|+|||-||-
T Consensus 117 PlHPvG~~FPGG 128 (163)
T PF09888_consen 117 PLHPVGMPFPGG 128 (163)
T ss_pred CCCCCCCCCCCC
Confidence 345568888843
No 301
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=28.00 E-value=2.8e+02 Score=21.30 Aligned_cols=68 Identities=15% Similarity=0.241 Sum_probs=41.4
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-----HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 24 ETFNNFTKEATATLTTESNEQKEMLIASNKSL-----AEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVE 92 (320)
Q Consensus 24 d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~L-----Ae~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~ 92 (320)
..|++|...+.. -+...+.-++++-...+.+ ++-+|=-..+.+..+.-|....+.+.+|..++..+..
T Consensus 6 ~~~d~~~~~~~~-~~~~~~~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 6 KIFDDLAKQISE-ALPAAQGPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred hHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555444431 2333344455555555444 4455556888888888888888888888777776654
No 302
>PLN02320 seryl-tRNA synthetase
Probab=27.97 E-value=2.8e+02 Score=29.01 Aligned_cols=52 Identities=23% Similarity=0.255 Sum_probs=34.6
Q ss_pred HHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy1409 134 IASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNV 186 (320)
Q Consensus 134 l~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~ 186 (320)
+.+|...-+.|+.+..--.. ..++...+.+.+++..+++.+..+.+.++...
T Consensus 72 ir~n~~~v~~~l~~R~~~~~-vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i 123 (502)
T PLN02320 72 IRDNKEAVAINIRNRNSNAN-LELVLELYENMLALQKEVERLRAERNAVANKM 123 (502)
T ss_pred HHhCHHHHHHHHHhcCCCcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34465555556655431011 45566888888889888888888888877665
No 303
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=27.94 E-value=78 Score=25.49 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=9.2
Q ss_pred HHHHHHHHHHH-HHhHHHHHHh
Q psy1409 194 LLQTAASEIEE-ESEKVPEEFL 214 (320)
Q Consensus 194 ~Lq~a~~eaEe-eSE~lae~FL 214 (320)
+|+.....++. ++|.|+.-++
T Consensus 13 kLqe~lk~~e~keaERigr~Al 34 (92)
T PF07820_consen 13 KLQEQLKQAETKEAERIGRIAL 34 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333332 3455555554
No 304
>PLN03079 Uncharacterized protein At4g33100; Provisional
Probab=27.88 E-value=1.4e+02 Score=23.96 Aligned_cols=40 Identities=13% Similarity=0.292 Sum_probs=27.9
Q ss_pred HHHHhcCCCC---HHHHHHHhhHHHHHHHHhHHHHHHHHHHHhccCC
Q psy1409 210 PEEFLNGTID---VDKFLETFTPKRILMHLRRIKADKMAEMLTKRNS 253 (320)
Q Consensus 210 ae~FL~G~id---v~~Fl~~f~~~R~~~h~Rk~K~e~l~~~~~~~~~ 253 (320)
.+.||.|..+ ...+...|+. |-...++...+..+|...|.
T Consensus 34 sEkFLKG~~~~~eC~~~w~~Yq~----Cv~~aL~ek~I~~lLe~ar~ 76 (91)
T PLN03079 34 SEKFVKGQWDKEDCVAEWHKYRA----CLSEHLEDKHLSQILEVDGT 76 (91)
T ss_pred HHhhhcCCcccchHHHHHHHHHH----HHHHHHHHcChHHHHHHHhh
Confidence 6899999774 7777788876 44555567777777766333
No 305
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=27.82 E-value=3.9e+02 Score=22.85 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q psy1409 67 LEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESETTESNEQK 130 (320)
Q Consensus 67 ~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~ 130 (320)
.....-+...+.....++..|-+++.-+- .|.|+.|.+-=..-.++....|+.|......
T Consensus 8 ~~~eali~~lFa~VSalKaAY~qLQ~Ah~----PyDpd~I~aAD~~vVsEL~~Ls~LK~~y~~~ 67 (131)
T PF04859_consen 8 AAMEALIAKLFATVSALKAAYAQLQQAHS----PYDPDKIQAADEAVVSELRRLSELKRRYRKK 67 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455577778889999999988876554 8999998853222235666666665555443
No 306
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=27.78 E-value=3e+02 Score=21.52 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=34.5
Q ss_pred HHHhHHHHHHhcCCCCHHHHHHHhhHHHHHHHHhHHHHHHHHHHHh
Q psy1409 204 EESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRIKADKMAEMLT 249 (320)
Q Consensus 204 eeSE~lae~FL~G~idv~~Fl~~f~~~R~~~h~Rk~K~e~l~~~~~ 249 (320)
.+-|.|+++.-.|++++++=|..|..-..+|.....+.+.-...+.
T Consensus 17 ~eLE~IV~~LE~Gel~Le~sl~~~erG~~L~k~c~~~L~~Ae~~v~ 62 (81)
T COG1722 17 AELEEIVESLESGELPLEEALKEFERGMALYKECQEKLQQAEQRVE 62 (81)
T ss_pred HHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788887789999999999999999887776666554444333
No 307
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=27.73 E-value=61 Score=26.54 Aligned_cols=43 Identities=26% Similarity=0.290 Sum_probs=20.5
Q ss_pred CHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy1409 22 DEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQ 72 (320)
Q Consensus 22 d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~ 72 (320)
|++.++.|+..+- .+.+.+..+|..|-..+-.++..|..++..
T Consensus 19 d~~eVD~fl~~l~--------~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~ 61 (131)
T PF05103_consen 19 DPDEVDDFLDELA--------EELERLQRENAELKEEIEELQAQLEELREE 61 (131)
T ss_dssp EHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHCCCCT-------
T ss_pred CHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 5666777766653 334555555555555555555555444433
No 308
>KOG1937|consensus
Probab=27.43 E-value=7.2e+02 Score=25.84 Aligned_cols=70 Identities=21% Similarity=0.219 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHH
Q psy1409 37 LTTESNEQKEMLIASNKSLA------EYNLS-QEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTV 106 (320)
Q Consensus 37 ~vk~~~~~re~ll~~N~~LA------e~NL~-~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~L 106 (320)
+..+.+.++|.++.--+.+- +.||+ +...|.+++.++.+........+.-...+.-++.+...+.-++..
T Consensus 266 q~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~ 342 (521)
T KOG1937|consen 266 QFEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDE 342 (521)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHH
Confidence 34444555555554444432 34444 234444444444444444444433333344444444444444333
No 309
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=27.43 E-value=1.8e+02 Score=24.82 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=17.5
Q ss_pred HhHHHHHHhcCCCCHHHHHHHhh
Q psy1409 206 SEKVPEEFLNGTIDVDKFLETFT 228 (320)
Q Consensus 206 SE~lae~FL~G~idv~~Fl~~f~ 228 (320)
.-.+..+|.+|+|+|-+|++.--
T Consensus 33 ~~~lESqlrng~IsVreFVr~La 55 (131)
T PF00427_consen 33 LISLESQLRNGQISVREFVRALA 55 (131)
T ss_dssp THHHHHHHHTTSS-HHHHHHHHH
T ss_pred cchHHHHHHcCCCcHHHHHHHHH
Confidence 34567799999999999998744
No 310
>KOG0288|consensus
Probab=27.34 E-value=6.9e+02 Score=25.63 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 45 KEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKV 91 (320)
Q Consensus 45 re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~ 91 (320)
.+.++.-|+.||.. +-.-..+++++....-+.+.++..+..+.
T Consensus 12 dqr~~~~~~~laq~----~k~~s~~~aq~~~~~a~~~ai~a~~~~~E 54 (459)
T KOG0288|consen 12 DQRLIDLNTELAQC----EKAQSRLSAQLVILRAESRAIKAKLQEKE 54 (459)
T ss_pred hhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555532 22333344444444444444444444433
No 311
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=27.02 E-value=1e+03 Score=27.51 Aligned_cols=54 Identities=15% Similarity=0.013 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 126 SNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELI 179 (320)
Q Consensus 126 l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl 179 (320)
........+..|+.|++.-+..-.+++.+..+-...-..+..+........++.
T Consensus 256 ~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi 309 (1109)
T PRK10929 256 LPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQS 309 (1109)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444466777889999988888877777776554444444444444444444443
No 312
>PF10164 DUF2367: Uncharacterized conserved protein (DUF2367); InterPro: IPR019317 This is a highly conserved set of proteins which contains three pairs of cysteine residues within a length of 42 amino acids and is rich in proline residues towards the N terminus. It includes a membrane protein that has been found to be highly expressed in the mouse brain and consequently, several members have been assigned as brain protein i3 (Bri3). Their function is unknown.
Probab=26.92 E-value=72 Score=25.99 Aligned_cols=11 Identities=36% Similarity=0.606 Sum_probs=4.8
Q ss_pred CCCCCCCCCCC
Q psy1409 286 PGYPVSGGGMP 296 (320)
Q Consensus 286 ~pyp~~~~~mp 296 (320)
.|||...++.|
T Consensus 14 ~p~~~~~~~~p 24 (98)
T PF10164_consen 14 PPYPYVVQPQP 24 (98)
T ss_pred CCCCeecCCCC
Confidence 44444444444
No 313
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=26.91 E-value=4e+02 Score=22.77 Aligned_cols=30 Identities=23% Similarity=0.147 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Q psy1409 38 TTESNEQKEMLIASNKSLAEYNLSQEEALL 67 (320)
Q Consensus 38 vk~~~~~re~ll~~N~~LAe~NL~~ep~L~ 67 (320)
++.+......+=.++.+|-..|=..+..|+
T Consensus 23 ~K~le~~~~~~E~EI~sL~~K~~~lE~eld 52 (143)
T PF12718_consen 23 VKQLEQENEQKEQEITSLQKKNQQLEEELD 52 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 314
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=26.81 E-value=96 Score=30.45 Aligned_cols=37 Identities=22% Similarity=0.417 Sum_probs=26.4
Q ss_pred HHHHHHhHHHHHHhcCCCCHHHHHHHhhHHHHHHHHhHHHHHHHHHH
Q psy1409 201 EIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRIKADKMAEM 247 (320)
Q Consensus 201 eaEeeSE~lae~FL~G~idv~~Fl~~f~~~R~~~h~Rk~K~e~l~~~ 247 (320)
-+|+....+-+.|++..||.. .|..+|+.+..||...
T Consensus 6 VI~dVI~~vr~dF~~~Gvde~----------vL~eLk~~We~KL~qs 42 (375)
T PF03153_consen 6 VIDDVINNVREDFEEEGVDEQ----------VLQELKQLWESKLSQS 42 (375)
T ss_dssp HHHHHHHHHHHHHHHCT--HH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHH----------HHHHHHHHHHHHHHhc
Confidence 357777888888887776644 7778888888888653
No 315
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=26.81 E-value=4.8e+02 Score=24.20 Aligned_cols=58 Identities=16% Similarity=0.244 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1409 126 SNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHK 183 (320)
Q Consensus 126 l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~ 183 (320)
+...|..|+....+|-.....-..+|...+.++...+.-++..+.++++...+++.+.
T Consensus 3 ~EELRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 3 MEELRQKLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777767777777777777777777777777777777653
No 316
>KOG1676|consensus
Probab=26.81 E-value=1.4e+02 Score=31.64 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=22.8
Q ss_pred CHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhccC
Q psy1409 219 DVDKFLETFTPKRILMHLRRIKADKMAEMLTKRN 252 (320)
Q Consensus 219 dv~~Fl~~f~~~R~~~h~Rk~K~e~l~~~~~~~~ 252 (320)
+...|+-.+ .+|.+-|++..-.+++.+...+..
T Consensus 363 ~ektf~IrG-~~~QIdhAk~LIr~kvg~~~~n~~ 395 (600)
T KOG1676|consen 363 KEKTFVIRG-DKRQIDHAKQLIRDKVGDIAPNTP 395 (600)
T ss_pred cceEEEEec-CcccchHHHHHHHHHhcccCCCCC
Confidence 334444433 457889999998899988777633
No 317
>TIGR00859 ENaC sodium channel transporter. This model is designed from the vertebrate members of the ENaC family.
Probab=26.55 E-value=2.2e+02 Score=30.25 Aligned_cols=6 Identities=17% Similarity=0.124 Sum_probs=3.2
Q ss_pred CCCCCC
Q psy1409 285 GPGYPV 290 (320)
Q Consensus 285 ~~pyp~ 290 (320)
..+||.
T Consensus 573 ~~~~~~ 578 (595)
T TIGR00859 573 ALPLPH 578 (595)
T ss_pred ccCCCC
Confidence 355654
No 318
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=26.44 E-value=2.1e+02 Score=20.95 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHH
Q psy1409 40 ESNEQKEMLIASNKSLAEYNLSQEEAL 66 (320)
Q Consensus 40 ~~~~~re~ll~~N~~LAe~NL~~ep~L 66 (320)
.+=.+|..++.++.+|.++|-+++.-|
T Consensus 30 ~vL~~R~~l~~e~~~L~~qN~eLr~lL 56 (60)
T PF14775_consen 30 KVLLDRAALIQEKESLEQQNEELRSLL 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578899999999999998776554
No 319
>KOG3571|consensus
Probab=26.39 E-value=70 Score=33.44 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=13.6
Q ss_pred CCCCCCCCCCCCCC-CCCCC-CCCC
Q psy1409 285 GPGYPVSGGGMPLP-HIQMT-PYPQ 307 (320)
Q Consensus 285 ~~pyp~~~~~mp~p-~~~~~-~yp~ 307 (320)
-.|||-++.++|+| |.++. |||+
T Consensus 504 ~~~~~h~~~p~~~~~~~p~~yP~~~ 528 (626)
T KOG3571|consen 504 EAPLPHSAAPWPLAAGVPYMYPEPP 528 (626)
T ss_pred cCcCCCCCCCccccCCCcccCCCCC
Confidence 45666666666666 55555 5553
No 320
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=26.33 E-value=3.2e+02 Score=21.38 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=39.5
Q ss_pred HHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1409 133 LIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKN 184 (320)
Q Consensus 133 ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~ 184 (320)
+-+.|+.|-+.|--.+.++..++..+..-..-+..++.-.+...++...+-.
T Consensus 27 ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~ 78 (88)
T PF10241_consen 27 LNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKA 78 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666888888888888888888888888888888777777777766543
No 321
>PRK01022 hypothetical protein; Provisional
Probab=26.04 E-value=37 Score=30.19 Aligned_cols=12 Identities=33% Similarity=0.600 Sum_probs=8.2
Q ss_pred CCCCCCCCCCCC
Q psy1409 289 PVSGGGMPLPHI 300 (320)
Q Consensus 289 p~~~~~mp~p~~ 300 (320)
|..|.|||-||-
T Consensus 119 PlHPvG~~FPGG 130 (167)
T PRK01022 119 PLHPVGTPFPGG 130 (167)
T ss_pred CCCCCCCCCCCC
Confidence 456668888853
No 322
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=26.04 E-value=3.4e+02 Score=23.28 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=9.1
Q ss_pred hhhcCHHHHHHHHHhcc
Q psy1409 18 ELVNDEETFNNFTKEAT 34 (320)
Q Consensus 18 ~Ll~d~d~l~~f~~~l~ 34 (320)
+.|+|--.|.+|+.+++
T Consensus 6 k~l~niR~lra~~re~~ 22 (135)
T PRK10947 6 KILNNIRTLRAQARECT 22 (135)
T ss_pred HHHHhHHHHHHHHHHCC
Confidence 34555555555555554
No 323
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=26.00 E-value=7.9e+02 Score=25.87 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 37 LTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESK 90 (320)
Q Consensus 37 ~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~ 90 (320)
||-+++.+.+.+..-++...+.-+++-..|-.+|+.+.-.-.||..|...+...
T Consensus 21 ~~~~lqaev~~lr~~~~~~e~~~~~l~~el~qvr~~~~~Q~seL~~l~~ev~~~ 74 (531)
T PF15450_consen 21 WVAELQAEVACLRGHKERCERATLSLLRELLQVRARVQLQDSELMQLRQEVKQR 74 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 788889999999999999999999999999999999999999999887655543
No 324
>PHA02669 hypothetical protein; Provisional
Probab=25.58 E-value=1.4e+02 Score=26.65 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=15.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy1409 257 PTHNGVGGHNGGSSSFGGMYPPVPVPPMGPGYPV 290 (320)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~pyp~ 290 (320)
|+.+-|++|+-- +--..||+.++.|| .+|||-
T Consensus 125 ~p~~DPGYH~Re-TlcsGpP~qa~~pp-~tP~pD 156 (210)
T PHA02669 125 SPSNDPGYHSRE-TLCSGPPRQANIPP-VTPYPD 156 (210)
T ss_pred CCCCCCCccccc-ccccCCCCccCCCC-CCCCCC
Confidence 345667888622 11111444444333 578883
No 325
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=25.55 E-value=5.5e+02 Score=23.89 Aligned_cols=83 Identities=12% Similarity=0.135 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q psy1409 87 VESKVELIKSHKNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLT 166 (320)
Q Consensus 87 ~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~ 166 (320)
++++......+.+..+++.+..++......+.... .....++..-..++..--...+.|.++..++......+.
T Consensus 132 l~~ll~~~~~ll~~~~~~~l~~~l~~l~~~l~~~~------~~l~~~l~~l~~l~~~l~~~~~~i~~ll~~l~~l~~~l~ 205 (291)
T TIGR00996 132 IDDLLGSLTRLLNGLDPEKLNAILNALAEALAGQG------PQLRNLLDGLAQLTAALNARDGDIGALIDNLNRVLDVLA 205 (291)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 44455555566667777777777765554443322 123333333334444333444555555544444333333
Q ss_pred HHHHHHHHH
Q psy1409 167 QLSKSVESK 175 (320)
Q Consensus 167 ~L~~~~~~k 175 (320)
.-.......
T Consensus 206 ~~~~~l~~~ 214 (291)
T TIGR00996 206 DRSDQLDRL 214 (291)
T ss_pred hhhHHHHHH
Confidence 333333333
No 326
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=25.26 E-value=7.5e+02 Score=25.32 Aligned_cols=7 Identities=29% Similarity=0.657 Sum_probs=3.9
Q ss_pred CCCCCCC
Q psy1409 285 GPGYPVS 291 (320)
Q Consensus 285 ~~pyp~~ 291 (320)
..+||+.
T Consensus 298 ~l~~PV~ 304 (420)
T COG4942 298 QLAWPVT 304 (420)
T ss_pred CcCCCCC
Confidence 4566654
No 327
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=25.24 E-value=3.1 Score=32.99 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=18.4
Q ss_pred HHhccCCHHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHH
Q psy1409 6 SLLEHLDISELKELVNDEETFNNFTKEATATLTTESNEQK 45 (320)
Q Consensus 6 ~~L~~lS~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~r 45 (320)
++|-++|+.||..+| ..++.+++..+...|
T Consensus 4 eeL~~m~v~efn~~L----------~~lt~~q~~~lK~~R 33 (92)
T PF03131_consen 4 EELVSMSVREFNRLL----------RGLTEEQIAELKQRR 33 (92)
T ss_dssp HHHHHS-HHHHHHHC----------TTS-HHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHH----------HcCCHHHHHHHHHHH
Confidence 568888999988888 344444555554433
No 328
>KOG0933|consensus
Probab=25.18 E-value=1.1e+03 Score=27.16 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 146 SQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKS 181 (320)
Q Consensus 146 ~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~ 181 (320)
.++..+..++.++......+...+....+++.++..
T Consensus 840 ~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~ 875 (1174)
T KOG0933|consen 840 QLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKD 875 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Confidence 334444444444444444444444444444444444
No 329
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=25.01 E-value=5.5e+02 Score=23.71 Aligned_cols=142 Identities=14% Similarity=0.102 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 104 DTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLE-----KKSQLLDLNEQLTQLSKSVESKVEL 178 (320)
Q Consensus 104 ~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Lee-----lr~ql~~~y~el~~L~~~~~~k~~k 178 (320)
+.|=..+...+..+.++| .+-.....+-..+..||+.-+.....+.. ++.-+...+.++.......+.+.-.
T Consensus 67 ~~Lg~~M~~~g~elg~~S---~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd 143 (223)
T cd07592 67 GLLGEVMLKYGRELGEDS---NFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKDLKEINHHRKKLEGRRLD 143 (223)
T ss_pred cHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544 34555666666667777666655544331 1111112222333333333333333
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHH---HhHHHHHHhcCCCCHHHHHHHhhHHHHHHHHhHH-HHHHHHHHHh
Q psy1409 179 IKSHKNNVSTDTVLALLQTAASEIEEE---SEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRI-KADKMAEMLT 249 (320)
Q Consensus 179 l~~~~~~~sp~~l~~~Lq~a~~eaEee---SE~lae~FL~G~idv~~Fl~~f~~~R~~~h~Rk~-K~e~l~~~~~ 249 (320)
++....+++- +.-.-|..|-.+-++. +...-..|++.+.+--..|..|.+...-||.++. ..+-+...|+
T Consensus 144 yD~~k~k~~k-~~eeEl~~Ae~kfe~s~E~a~~~M~~il~~e~e~~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~ 217 (223)
T cd07592 144 YDYKKRKQGK-GPDEELKQAEEKFEESKELAENSMFNLLENDVEQVSQLSALVEAQLDYHRQSAEILEELQSKLQ 217 (223)
T ss_pred HHHHHHhccc-CchHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3433333321 1234444444444444 4444568888888888889999999999999988 5555555544
No 330
>PHA02682 ORF080 virion core protein; Provisional
Probab=24.95 E-value=2.1e+02 Score=26.39 Aligned_cols=75 Identities=12% Similarity=0.097 Sum_probs=55.0
Q ss_pred HHHHh-hhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Q psy1409 115 SEIEE-ESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLA 193 (320)
Q Consensus 115 ~~~ee-esE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~ 193 (320)
..+|. .++...++.++.++-.+.|.|.-..+.+-.+|+..|+.++..++.++.|-.. ..++.+-.+.++..
T Consensus 201 kv~~~d~~~k~~ikkeladiadsvrdl~aeS~~LtrDIE~AKstTq~AIdDLRrLl~~--------~~v~~~~tps~l~d 272 (280)
T PHA02682 201 KIIDADNDDKDLIKKELADIADSVRDLNAESLSLTRDIENAKSTTQAAIDDLRRLLTG--------GGVARRDTPSALRD 272 (280)
T ss_pred hhhhcccchHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHhc--------CCccccCChHHHHH
Confidence 44554 4555678899999999999999888899999999998888877777766531 12455666777766
Q ss_pred HHHH
Q psy1409 194 LLQT 197 (320)
Q Consensus 194 ~Lq~ 197 (320)
++..
T Consensus 273 rvdn 276 (280)
T PHA02682 273 RVDN 276 (280)
T ss_pred hhhc
Confidence 6543
No 331
>KOG3671|consensus
Probab=24.74 E-value=2.3e+02 Score=29.60 Aligned_cols=16 Identities=6% Similarity=-0.116 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1409 38 TTESNEQKEMLIASNK 53 (320)
Q Consensus 38 vk~~~~~re~ll~~N~ 53 (320)
++-+....-.|..+-.
T Consensus 37 ~~~l~aAVVqLY~a~p 52 (569)
T KOG3671|consen 37 CKTLAAAVVQLYKAYP 52 (569)
T ss_pred hhhHHHHHHHHHhhcC
Confidence 3333444444443333
No 332
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=24.72 E-value=4.6e+02 Score=22.68 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1409 66 LLEKKSQLLDLNEQLTQLSKSVESKVELIKSH 97 (320)
Q Consensus 66 L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~ 97 (320)
|++.+..+....++....+..-+.+...++..
T Consensus 39 le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~ 70 (167)
T PRK14475 39 LDAYAAKIQAELDEAQRLREEAQALLADVKAE 70 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555433
No 333
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=24.55 E-value=3.9e+02 Score=24.49 Aligned_cols=14 Identities=7% Similarity=0.218 Sum_probs=8.7
Q ss_pred hhcCHHHHHHHHHh
Q psy1409 19 LVNDEETFNNFTKE 32 (320)
Q Consensus 19 Ll~d~d~l~~f~~~ 32 (320)
|-+|++.+.+||..
T Consensus 145 l~~np~~V~~lF~~ 158 (239)
T PF07195_consen 145 LAENPDAVQALFAG 158 (239)
T ss_pred HhhCHHHHHHHHcc
Confidence 45566666666654
No 334
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=24.46 E-value=1.4e+02 Score=23.19 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHH------HHHHHHHhHHHHHH---hcCCCCHHHHHHHhhHHHHHHHH
Q psy1409 186 VSTDTVLALLQTAA------SEIEEESEKVPEEF---LNGTIDVDKFLETFTPKRILMHL 236 (320)
Q Consensus 186 ~sp~~l~~~Lq~a~------~eaEeeSE~lae~F---L~G~idv~~Fl~~f~~~R~~~h~ 236 (320)
-|.+-+...|+... ...+.+-+.|-..+ -+|.|+.++|+.-....-..||.
T Consensus 29 Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~~~~ 88 (93)
T cd05026 29 LSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVACND 88 (93)
T ss_pred ECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46666777665532 22445666666665 36899999999988888788875
No 335
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=24.45 E-value=2.2e+02 Score=26.15 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1409 126 SNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKN 184 (320)
Q Consensus 126 l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~ 184 (320)
-+..+++.|.+|+.|.+..-.++.+|..+|.+ ..+++.|....+.+..-++.+.+
T Consensus 116 RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~e----n~~L~elae~~~~la~~ie~l~~ 170 (200)
T PF07412_consen 116 RRKALEEALEENEKLHKEIEQKDEEIAKLKEE----NEELKELAEHVQYLAEVIERLTG 170 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567788889999888888888888877743 34466666665555555555544
No 336
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=24.39 E-value=3.2e+02 Score=20.81 Aligned_cols=51 Identities=22% Similarity=0.328 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHH------HHHHHhHHHHHH---hcCCCCHHHHHHHhhHHHHHHHH
Q psy1409 186 VSTDTVLALLQTAASE------IEEESEKVPEEF---LNGTIDVDKFLETFTPKRILMHL 236 (320)
Q Consensus 186 ~sp~~l~~~Lq~a~~e------aEeeSE~lae~F---L~G~idv~~Fl~~f~~~R~~~h~ 236 (320)
.+..-+...|+..... .+++.+.|-..| -+|.|+.++|+.-....-..||.
T Consensus 28 Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~~~~ 87 (92)
T cd05025 28 LSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVACNN 87 (92)
T ss_pred ECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 5777777777653322 456667776665 25789999999877776688885
No 337
>KOG2220|consensus
Probab=24.38 E-value=9.5e+02 Score=26.24 Aligned_cols=57 Identities=25% Similarity=0.282 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH--HHhcCCCCHHHHHHHhhHHH-HHHHHhHH-HHHHHHHHH
Q psy1409 189 DTVLALLQTAASEIEEESEKVPE--EFLNGTIDVDKFLETFTPKR-ILMHLRRI-KADKMAEML 248 (320)
Q Consensus 189 ~~l~~~Lq~a~~eaEeeSE~lae--~FL~G~idv~~Fl~~f~~~R-~~~h~Rk~-K~e~l~~~~ 248 (320)
..++..|+.+.....+-+..+.+ .|.+ ++..=+.++...+ +..|.|+. |...+..+.
T Consensus 638 e~~l~~L~~a~~~~~el~~~~~~g~~fY~---~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 698 (714)
T KOG2220|consen 638 EKLLSTLAAAYDSYRELSKKLSEGTEFYN---DLTNRLVNLANRVSDAGFARSTEKNKLLRPLS 698 (714)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHH---HHHHHHHHHHHHhchhhhcchhhhccccCccc
Confidence 56778888888877777777754 5554 2444455555544 77777777 544444433
No 338
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=24.21 E-value=25 Score=37.78 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 13 ISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLA 56 (320)
Q Consensus 13 ~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LA 56 (320)
..++..+..+.|.+..-..++.. ++..+..+++.+..+|..|-
T Consensus 178 ~~~l~~~~~e~d~l~q~~~el~~-~i~~L~~e~~~L~~e~~~l~ 220 (713)
T PF05622_consen 178 YEELSRLVAERDELAQRCHELEK-QISDLQEEKESLQSENEELQ 220 (713)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHhhhhhhhhh
Confidence 45677777888877766666652 56677777777777776553
No 339
>KOG1365|consensus
Probab=24.10 E-value=6.4e+02 Score=25.76 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=9.1
Q ss_pred CCCCHHHHHHHhhHHH
Q psy1409 216 GTIDVDKFLETFTPKR 231 (320)
Q Consensus 216 G~idv~~Fl~~f~~~R 231 (320)
|.=+=+.|++---..|
T Consensus 321 GrPSGeAFIqm~nae~ 336 (508)
T KOG1365|consen 321 GRPSGEAFIQMRNAER 336 (508)
T ss_pred CCcChhhhhhhhhhHH
Confidence 3445567776555555
No 340
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=24.00 E-value=6.6e+02 Score=24.26 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1409 66 LLEKKSQLLDLNEQLTQLSKS 86 (320)
Q Consensus 66 L~elr~~l~~~~~el~~l~~~ 86 (320)
+..++.++.....++..+...
T Consensus 146 ~~~l~~~i~~~~~~i~~~~~~ 166 (423)
T TIGR01843 146 LELILAQIKQLEAELAGLQAQ 166 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 341
>KOG0804|consensus
Probab=23.90 E-value=8.3e+02 Score=25.35 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=0.0
Q ss_pred HhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 17 KELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKS 96 (320)
Q Consensus 17 ~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~ 96 (320)
..|.++-.+++..+.++...|+..+.+--+.++.+-.+|+-.+ ..++..+..+..+..+++.-.++|..-.+-+++
T Consensus 328 sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~----~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E 403 (493)
T KOG0804|consen 328 SQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQES----SDLEAEKKIVERKLQQLQTKLKKCQKELKEERE 403 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy1409 97 HKNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLN 162 (320)
Q Consensus 97 ~~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y 162 (320)
+... |..-++.--..+.+.-+. +++.+-+++..|.++..||.+..
T Consensus 404 ~n~~-----l~knq~vw~~kl~~~~e~----------------~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 404 ENKK-----LIKNQDVWRGKLKELEER----------------EKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHH-----HHhhHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHhHh
No 342
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.76 E-value=7.4e+02 Score=25.40 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1409 152 LEKKSQLLDLNEQLTQLSKSVESKVELIKSHK 183 (320)
Q Consensus 152 eelr~ql~~~y~el~~L~~~~~~k~~kl~~~~ 183 (320)
..++.++.....++..+....+++..+++.+.
T Consensus 71 ~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~l 102 (429)
T COG0172 71 EELIAEVKELKEKLKELEAALDELEAELDTLL 102 (429)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 33444444444445555555555555555543
No 343
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=23.75 E-value=2e+02 Score=22.08 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 50 ASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKS 86 (320)
Q Consensus 50 ~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~ 86 (320)
..++.+-+.|....-.+..++.++..+-..+..+...
T Consensus 36 ~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 36 ESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666655555555433
No 344
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=23.74 E-value=1e+03 Score=26.25 Aligned_cols=63 Identities=17% Similarity=0.228 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhHHHHHHhc
Q psy1409 152 LEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLN 215 (320)
Q Consensus 152 eelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~FL~ 215 (320)
++.+.++.....++++++.+++.+.+++++-... --..+....+..+.++..+++++...+-+
T Consensus 533 e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~-~~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 533 EQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDK-LLEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444332221 12234555666777777777777777654
No 345
>PRK09343 prefoldin subunit beta; Provisional
Probab=23.69 E-value=4.2e+02 Score=21.90 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Q psy1409 126 SNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVST 188 (320)
Q Consensus 126 l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp 188 (320)
....=-+++....+=|..||..+.+..+. .+...-.....+...+...+..++++...+++
T Consensus 57 Yk~VG~vlv~qd~~e~~~~l~~r~E~ie~--~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~ 117 (121)
T PRK09343 57 YKIVGNLLVKVDKTKVEKELKERKELLEL--RSRTLEKQEKKLREKLKELQAKINEMLSKYYP 117 (121)
T ss_pred HHHhhHHHhhccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44445668888888888888887666553 34444455666777888888888887666554
No 346
>PRK14070 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.48 E-value=3.3e+02 Score=20.62 Aligned_cols=37 Identities=11% Similarity=0.120 Sum_probs=28.3
Q ss_pred HhHHHHHHhcCCCCHHHHHHHhhHHHHHHHHhHHHHH
Q psy1409 206 SEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRIKAD 242 (320)
Q Consensus 206 SE~lae~FL~G~idv~~Fl~~f~~~R~~~h~Rk~K~e 242 (320)
-+.|+.+.-+|++++++-+..|.+-..+.-..+.+.+
T Consensus 4 LEeIV~~LE~gel~Leesl~lyeeG~~L~k~C~~~L~ 40 (69)
T PRK14070 4 LEEIVNRLENEDLPLEESIKLFERGVELYRKCKEILQ 40 (69)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888889999999999999988865544444433
No 347
>COG5244 NIP100 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]
Probab=23.38 E-value=8.8e+02 Score=25.50 Aligned_cols=127 Identities=12% Similarity=0.035 Sum_probs=61.2
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCH-----------HHHHHHHHHHHHHHHhh
Q psy1409 52 NKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVST-----------DTVLALLQTAASEIEEE 120 (320)
Q Consensus 52 N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp-----------~~Ll~lLq~a~~~~eee 120 (320)
-++.|+. +...++.++.-..+..-++....+..+...=-+++.++...| +++...+....-+.-.
T Consensus 110 e~s~~r~---L~~ti~~l~s~~Ke~~ve~~~~~e~Ld~~n~sl~e~~s~~~p~ln~D~SklS~~e~~~f~ee~~v~~~d- 185 (669)
T COG5244 110 EESKIRR---LEETIEALKSTEKEEIVELRRENEELDKINLSLRERISSEEPELNKDGSKLSYDELKEFVEESRVQVYD- 185 (669)
T ss_pred HHHhhhH---HHhhHHhhcccchhhheecccchhhHHHHhhhHHhhhcccccccCCcccccccchhHHHHHHhHHHHHH-
Confidence 3444443 344445555444444445555555555555555555444333 2333333333211111
Q ss_pred hhhhhhHHHHHHHHHhhHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1409 121 SETTESNEQKEMLIASNKSLAEYNLSQEEA---LLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKN 184 (320)
Q Consensus 121 sE~k~l~~~~e~ll~~N~~LAe~NL~~ep~---Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~ 184 (320)
.-++-.++......|.++++.++...-+ ++.+-..-...-..+.+|....+.++.++-.++.
T Consensus 186 --~v~l~~~~~~t~n~~gs~~~~~~~~~~r~~~~d~L~~~N~~L~~~Id~ln~eLE~l~~Ql~~L~s 250 (669)
T COG5244 186 --MVELVSDISETLNRNGSIQRSSVRECERSNIHDVLFLVNGILDGVIDELNGELERLRRQLVSLMS 250 (669)
T ss_pred --HHHHHhhhhhccccchHHHHHHHHHHHhccchHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1233455566777888888888875544 4433322223333444455555555554444433
No 348
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=23.35 E-value=5.6e+02 Score=23.16 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1409 38 TTESNEQKEMLIASNKSLA 56 (320)
Q Consensus 38 vk~~~~~re~ll~~N~~LA 56 (320)
+.+++...+.+..+|+.|=
T Consensus 21 l~elq~~l~~l~~ENk~Lk 39 (194)
T PF15619_consen 21 LAELQRKLQELRKENKTLK 39 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555556665553
No 349
>KOG3161|consensus
Probab=23.30 E-value=1.8e+02 Score=31.50 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q psy1409 188 TDTVLALLQTAASEIEEESEK 208 (320)
Q Consensus 188 p~~l~~~Lq~a~~eaEeeSE~ 208 (320)
-+.|++.||++.+-++...|-
T Consensus 315 mqsiidklq~~~s~aqsV~El 335 (861)
T KOG3161|consen 315 MQSIIDKLQAAGSSAQSVTEL 335 (861)
T ss_pred HHHHhhhhcCCCchhhhHHHH
Confidence 345667777766666555443
No 350
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=23.07 E-value=3.7e+02 Score=21.06 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=58.0
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy1409 29 FTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNV 101 (320)
Q Consensus 29 f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~ 101 (320)
+|..|. ..|+..-..+.-|..+++.|=++|-........+++.-.....+..+|+.....-+.++..+.+++
T Consensus 5 vleqLE-~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 5 VFEKLE-AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445553 367777777888889999999999999999999998888888888888888888888887776654
No 351
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=23.03 E-value=8.6e+02 Score=25.25 Aligned_cols=17 Identities=29% Similarity=0.249 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy1409 187 STDTVLALLQTAASEIE 203 (320)
Q Consensus 187 sp~~l~~~Lq~a~~eaE 203 (320)
.-.++-.+|+.+..+.+
T Consensus 408 ~i~t~E~rL~aa~ke~e 424 (522)
T PF05701_consen 408 AIKTAEERLEAALKEAE 424 (522)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444445555444444
No 352
>PF09371 Tex_N: Tex-like protein N-terminal domain; InterPro: IPR018974 This presumed domain is found at the N terminus of Q45388 from SWISSPROT. This protein defines a novel family of prokaryotic transcriptional accessory factors []. ; PDB: 2OCE_A 3BZK_A 3BZC_A.
Probab=22.96 E-value=5.2e+02 Score=23.34 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=20.6
Q ss_pred HHhhhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhH
Q psy1409 95 KSHKNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNK 138 (320)
Q Consensus 95 ~~~~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~ 138 (320)
++.-+.++...|..+. +.....+.|...++.++....
T Consensus 33 Ke~TG~Lde~~lR~i~-------~~~~~~~~L~~Rk~~il~~i~ 69 (193)
T PF09371_consen 33 KEMTGGLDEVQLREIQ-------DRYEYLRELEKRKESILKSIE 69 (193)
T ss_dssp HHHHTS--HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhCCCCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777533 233345566666666665433
No 353
>PLN02939 transferase, transferring glycosyl groups
Probab=22.95 E-value=1.2e+03 Score=26.71 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHH
Q psy1409 166 TQLSKSVESKVELIKS-HKNNVSTDTVLALLQTAASEIE 203 (320)
Q Consensus 166 ~~L~~~~~~k~~kl~~-~~~~~sp~~l~~~Lq~a~~eaE 203 (320)
+.|...++.++.-+.+ ...+++...+ .+||..+.-.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 364 (977)
T PLN02939 327 QDLRDKVDKLEASLKEANVSKFSSYKV-ELLQQKLKLLE 364 (977)
T ss_pred hHHHHHHHHHHHHHHHhhHhhhhHHHH-HHHHHHHHHHH
Confidence 3455555555555555 3455555543 55555554433
No 354
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.91 E-value=2.6e+02 Score=19.33 Aligned_cols=33 Identities=24% Similarity=0.169 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy1409 41 SNEQKEMLIASNKSLAEYNLSQEEALLEKKSQL 73 (320)
Q Consensus 41 ~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l 73 (320)
+...-+.|.+.|.+|-+.|-.+.-.+..++..+
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666666666666666666665555544
No 355
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=22.87 E-value=1e+03 Score=26.08 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=15.8
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHHH
Q psy1409 53 KSLAEYNLSQEEALLEKKSQLLDLN 77 (320)
Q Consensus 53 ~~LAe~NL~~ep~L~elr~~l~~~~ 77 (320)
+...+..-.++-+|++|+..|..+.
T Consensus 394 eEmtk~k~~ke~eleeL~~~L~e~q 418 (786)
T PF05483_consen 394 EEMTKQKNNKEVELEELKKILAEKQ 418 (786)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3344444456666888888877765
No 356
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.80 E-value=3.6e+02 Score=20.70 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=30.7
Q ss_pred HHHhHHHHHHhcCCCCHHHHHHHhhHHHHHHHHhHHHHHHH
Q psy1409 204 EESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRIKADKM 244 (320)
Q Consensus 204 eeSE~lae~FL~G~idv~~Fl~~f~~~R~~~h~Rk~K~e~l 244 (320)
.+-|.|+.+.-+|++++++-+..|.+--.+....+.+.+..
T Consensus 13 ~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k~c~~~L~~a 53 (75)
T PRK14064 13 AELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQSA 53 (75)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888878999999999999998886665555554433
No 357
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=22.64 E-value=8.9e+02 Score=25.24 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=15.6
Q ss_pred HHHhhhcCHHHHHHHHHhcc
Q psy1409 15 ELKELVNDEETFNNFTKEAT 34 (320)
Q Consensus 15 EL~~Ll~d~d~l~~f~~~l~ 34 (320)
+--.||+|++.=+.|+.+|-
T Consensus 342 ~a~tlLe~~~~R~~fldeL~ 361 (507)
T PF05600_consen 342 DALTLLENPETRNQFLDELL 361 (507)
T ss_pred hhhhhcCCHhHHHHHHHHHH
Confidence 33468999999999988874
No 358
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.63 E-value=4.4e+02 Score=21.68 Aligned_cols=76 Identities=14% Similarity=0.206 Sum_probs=50.4
Q ss_pred cCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH-----HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 21 NDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAE-----YNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIK 95 (320)
Q Consensus 21 ~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe-----~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~ 95 (320)
-|+..|++++..+-++.-...+.-+.++-...+.... --|=...+.+-.+.-+..-.+++..|..+...+..++.
T Consensus 11 ~~~~~~e~~~~ql~e~~a~~~~~~~~evE~~~r~~~q~~lnkLDlVsREEFdvq~qvl~rtR~kl~~Leari~~LEarl~ 90 (103)
T COG2960 11 IGPNRFEDIAAQLSEDAAGAAQEVRAEVEKAFRAQLQRQLNKLDLVSREEFDVQRQVLLRTREKLAALEARIEELEARLA 90 (103)
T ss_pred cCHHHHHHHHHHHHHHccccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3677777777766433334334444444444444443 33446778888888888889999999999988888876
Q ss_pred H
Q psy1409 96 S 96 (320)
Q Consensus 96 ~ 96 (320)
+
T Consensus 91 ~ 91 (103)
T COG2960 91 S 91 (103)
T ss_pred c
Confidence 3
No 359
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.56 E-value=9.1e+02 Score=25.36 Aligned_cols=28 Identities=4% Similarity=0.126 Sum_probs=15.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Q psy1409 177 ELIKSHKNNVSTDTVLALLQTAASEIEEE 205 (320)
Q Consensus 177 ~kl~~~~~~~sp~~l~~~Lq~a~~eaEee 205 (320)
+.+...+.+||.+.|...|+.- .++|..
T Consensus 313 ~~~~~qa~~~s~~~L~~~l~~l-~~~D~~ 340 (585)
T PRK14950 313 AALQKVSQIANLEALTKWVKAF-SQLDFQ 340 (585)
T ss_pred HHHHHHHhcCCHHHHHHHHHHH-HHHHHH
Confidence 4455566677777666555432 244443
No 360
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=22.49 E-value=3e+02 Score=19.76 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=33.6
Q ss_pred HHhccCCHHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Q psy1409 6 SLLEHLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLT 81 (320)
Q Consensus 6 ~~L~~lS~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~ 81 (320)
.+|++||.+||.+.+.+ .+.+++.-.-..|-..+..-..+...|..++.....++
T Consensus 2 ~elr~ls~~eL~~~l~e---------------------lk~eL~~Lr~q~~~~~l~n~~~ir~~Rr~IARi~Tvl~ 56 (58)
T PF00831_consen 2 KELRELSDEELQEKLEE---------------------LKKELFNLRFQKATGQLENPHRIREIRRDIARILTVLR 56 (58)
T ss_dssp HHHCHSHHHHHHHHHHH---------------------HHHHHHHHHHHHHHSSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHH---------------------HHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence 35667777777654332 23444444445566677777777777877777665554
No 361
>PRK14154 heat shock protein GrpE; Provisional
Probab=22.46 E-value=5.2e+02 Score=23.83 Aligned_cols=97 Identities=10% Similarity=0.046 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q psy1409 121 SETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAAS 200 (320)
Q Consensus 121 sE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~ 200 (320)
+++..+..+.+.+-..+..+-...|-...+++.+| -+..+..-+.+......+...+=| ++..|..|+.
T Consensus 52 ~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyR---------KR~~kE~e~~~~~a~e~~~~~LLp--VlDnLeRAL~ 120 (208)
T PRK14154 52 PSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLR---------KRIEREKADIIKFGSKQLITDLLP--VADSLIHGLE 120 (208)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhh--HHhHHHHHHh
Q ss_pred HHHHHHhHHHHHHhcC-CCCHHHHHHHhhH
Q psy1409 201 EIEEESEKVPEEFLNG-TIDVDKFLETFTP 229 (320)
Q Consensus 201 eaEeeSE~lae~FL~G-~idv~~Fl~~f~~ 229 (320)
......+.+ ..|++| ++-...|+..|..
T Consensus 121 ~~~~~~~~~-~~l~eGvemi~k~l~~vL~k 149 (208)
T PRK14154 121 SPASEDPQV-KSMRDGMSLTLDLLHNTLAK 149 (208)
T ss_pred cccccchhH-HHHHHHHHHHHHHHHHHHHH
No 362
>PLN02678 seryl-tRNA synthetase
Probab=22.45 E-value=5.1e+02 Score=26.58 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy1409 155 KSQLLDLNEQLTQLSKSVESKVELIKSHKNNV 186 (320)
Q Consensus 155 r~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~ 186 (320)
..++...+.+.+++..+++.+..+.+.++...
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I 63 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEV 63 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566888888888888888888888877655
No 363
>KOG1962|consensus
Probab=22.43 E-value=3.8e+02 Score=24.90 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=18.5
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1409 60 LSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSH 97 (320)
Q Consensus 60 L~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~ 97 (320)
......+.-++.++..+-.++..+.+.++.+.++-+++
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44444444555555555555555555554444444433
No 364
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.39 E-value=9.9e+02 Score=25.71 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=15.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHH
Q psy1409 175 KVELIKSHKNNVSTDTVLALLQT 197 (320)
Q Consensus 175 k~~kl~~~~~~~sp~~l~~~Lq~ 197 (320)
..+++..+..+|+...|...++.
T Consensus 312 ~~~~~~~~A~~~s~~~L~~~l~~ 334 (624)
T PRK14959 312 EARQWLGWAKRFEPAHIHACWQM 334 (624)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHH
Confidence 34455667777787777776654
No 365
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=22.38 E-value=5.1e+02 Score=22.88 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCH
Q psy1409 62 QEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVST 103 (320)
Q Consensus 62 ~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp 103 (320)
..-.+...+..+....+++..|.+.+..+.+.+..++..+.|
T Consensus 63 ~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Np 104 (157)
T COG3352 63 VKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNP 104 (157)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444677788889999999999999999999999998887765
No 366
>PRK10698 phage shock protein PspA; Provisional
Probab=22.37 E-value=6.1e+02 Score=23.26 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=7.9
Q ss_pred hhhcCHH-HHHHHHHhc
Q psy1409 18 ELVNDEE-TFNNFTKEA 33 (320)
Q Consensus 18 ~Ll~d~d-~l~~f~~~l 33 (320)
+=.+||. -++.++.++
T Consensus 20 dkaEDP~k~l~q~i~em 36 (222)
T PRK10698 20 EKAEDPQKLVRLMIQEM 36 (222)
T ss_pred HhhcCHHHHHHHHHHHH
Confidence 3345777 444444444
No 367
>PHA03369 capsid maturational protease; Provisional
Probab=22.24 E-value=1e+03 Score=25.70 Aligned_cols=13 Identities=8% Similarity=0.123 Sum_probs=5.7
Q ss_pred CCCCHHHHHHHhh
Q psy1409 216 GTIDVDKFLETFT 228 (320)
Q Consensus 216 G~idv~~Fl~~f~ 228 (320)
|+.-++++|..-.
T Consensus 320 de~v~~~yl~~G~ 332 (663)
T PHA03369 320 DETVIEQYLIEGR 332 (663)
T ss_pred cchHHHHHHHHHH
Confidence 3333455554433
No 368
>KOG2295|consensus
Probab=21.69 E-value=1e+03 Score=25.50 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcCCCCHHHHHHHhhHHHH
Q psy1409 191 VLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRI 232 (320)
Q Consensus 191 l~~~Lq~a~~eaEeeSE~lae~FL~G~idv~~Fl~~f~~~R~ 232 (320)
....|+.-.+..++-++.-|+. .|..++++||+.|..+-+
T Consensus 463 f~s~le~~l~~~~~lee~eakk--kg~k~~e~eve~~v~s~t 502 (648)
T KOG2295|consen 463 FLSDLENNLACLLELEEEEAKK--KGAKDVEDEVENFVDSNT 502 (648)
T ss_pred HHHHhhhcccccccchHHHHHH--hcccCHHHHHHHHHHHHH
Confidence 3456666666666666666665 477788888888887653
No 369
>KOG2264|consensus
Probab=21.66 E-value=8.1e+02 Score=26.40 Aligned_cols=41 Identities=12% Similarity=0.149 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Q psy1409 150 ALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDT 190 (320)
Q Consensus 150 ~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~ 190 (320)
.++++|..+.++-.++..|+...+..+.+++++.+...|+-
T Consensus 115 kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl 155 (907)
T KOG2264|consen 115 KIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKL 155 (907)
T ss_pred HHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCce
Confidence 34556666666666666666666666666666666555543
No 370
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=21.53 E-value=8.9e+02 Score=24.86 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 62 QEEALLEKKSQLLDLNEQLTQLSKSVESKVELI 94 (320)
Q Consensus 62 ~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~ 94 (320)
..+++.+++.++...-.++..+..+.+-...+.
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666666666665555444444444
No 371
>KOG2010|consensus
Probab=21.36 E-value=2.7e+02 Score=27.69 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHhhcc
Q psy1409 38 TTESNEQKEMLIASNKSLA--EYNLSQ 62 (320)
Q Consensus 38 vk~~~~~re~ll~~N~~LA--e~NL~~ 62 (320)
|.++..-.-.+|-+|-+|- +.||-+
T Consensus 121 v~EveekykkaMvsnaQLDNEKsnl~Y 147 (405)
T KOG2010|consen 121 VSEVEEKYKKAMVSNAQLDNEKNNLIY 147 (405)
T ss_pred hHHHHHHHHHHHHHHHhhcccccceee
Confidence 4555555555555665553 445544
No 372
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=21.23 E-value=3.6e+02 Score=20.21 Aligned_cols=38 Identities=21% Similarity=0.121 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Q psy1409 45 KEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQ 82 (320)
Q Consensus 45 re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~ 82 (320)
+.+++.=.-..|-..|..--+|.+.|..++.....+.+
T Consensus 25 k~elf~LRfq~atgql~n~~~ir~~RrdIARikTil~e 62 (67)
T CHL00154 25 KKELFDLRLKKATRQNFKPHLFKHKKHRLAQLLTLLSS 62 (67)
T ss_pred HHHHHHHHHHHHhCcccChHHHHHHHHHHHHHHHHHHH
Confidence 44444444455677888888888888888887666654
No 373
>KOG2115|consensus
Probab=21.17 E-value=1.2e+03 Score=26.30 Aligned_cols=69 Identities=13% Similarity=0.102 Sum_probs=38.7
Q ss_pred hcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy1409 20 VNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDL-NEQLTQLSKSVESKVELIK 95 (320)
Q Consensus 20 l~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~-~~el~~l~~~~~~~~~~~~ 95 (320)
|+|+.-|...+--+|. .-.......++...+.|.++|.+|..-=.-+.-. ..|+...-.+|-.....++
T Consensus 209 Lddp~TF~~V~~~id~-------t~~~~a~~~~~~~~~~~~~LQekLs~yLDvVE~~La~eIs~~SdsFfha~~~~~ 278 (951)
T KOG2115|consen 209 LDDPATFHSVLPAIDL-------TLTKTAMNRQAERLEANSALQEKLSHYLDVVELHLAQEISKRSDSFFHAMTSLH 278 (951)
T ss_pred CCCcchHhhhcccccc-------chhcccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5566666655443221 1133455666778888999998887655554442 4555554444444444443
No 374
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.17 E-value=4.7e+02 Score=23.18 Aligned_cols=18 Identities=11% Similarity=0.302 Sum_probs=11.4
Q ss_pred HHHHHHHhhHHHHHHhhh
Q psy1409 129 QKEMLIASNKSLAEYNLS 146 (320)
Q Consensus 129 ~~e~ll~~N~~LAe~NL~ 146 (320)
.-++||.==+.|+..+..
T Consensus 82 ~~~eLL~YA~rISk~t~~ 99 (188)
T PF10018_consen 82 DYEELLSYAHRISKFTSA 99 (188)
T ss_pred CHHHHHHHHHHHHHhcCC
Confidence 455666666667777766
No 375
>KOG0046|consensus
Probab=20.99 E-value=1.7e+02 Score=30.88 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH----HHHHhHHHHHH---hcCCCCHHHHHHHhhHHHHHH
Q psy1409 163 EQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEI----EEESEKVPEEF---LNGTIDVDKFLETFTPKRILM 234 (320)
Q Consensus 163 ~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~ea----EeeSE~lae~F---L~G~idv~~Fl~~f~~~R~~~ 234 (320)
+|+++|++.|.... .-.+..+...+...+..+..-. +++.+.+-..+ .+|+++.++|+.-|.+.+...
T Consensus 16 ~El~~l~~kF~~~d----~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s~~ 90 (627)
T KOG0046|consen 16 EELRELKEKFNKLD----DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKSKD 90 (627)
T ss_pred HHHHHHHHHHHhhc----CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhhhh
Confidence 56777777665443 4456667777777766665555 66666665554 378999999999998877544
No 376
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=20.99 E-value=6.9e+02 Score=23.34 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHH---HHHhcCCCCHHHHHHHhhHHHHHHHHhHH-HHHHHHHHHh
Q psy1409 190 TVLALLQTAASEIEEESEKVP---EEFLNGTIDVDKFLETFTPKRILMHLRRI-KADKMAEMLT 249 (320)
Q Consensus 190 ~l~~~Lq~a~~eaEeeSE~la---e~FL~G~idv~~Fl~~f~~~R~~~h~Rk~-K~e~l~~~~~ 249 (320)
.+..-+..|-.+.++..|..+ -.|++.+.+....|..|.+..--||.+.+ -.+.+..-|.
T Consensus 162 ~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~ 225 (244)
T cd07595 162 ALKDEYEEAELKLEQCRDALATDMYEFLAKEAEIASYLIDLIEAQREYHRTALSVLEAVLPELQ 225 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555544444443 36888889999999999999999999987 4454444443
No 377
>PF14179 YppG: YppG-like protein
Probab=20.91 E-value=1.2e+02 Score=25.27 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=12.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q psy1409 287 GYPVSGGGMPLPHIQMTPYPQL 308 (320)
Q Consensus 287 pyp~~~~~mp~p~~~~~~yp~~ 308 (320)
++|...++|..|....+|||..
T Consensus 36 ~~p~~~~~~~~~p~~~~PYP~~ 57 (112)
T PF14179_consen 36 PPPQQQQGMFYPPQQPNPYPKQ 57 (112)
T ss_pred CCcccccccCCCCCCCCCCCCC
Confidence 3444444555553333788865
No 378
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=20.85 E-value=4.7e+02 Score=28.36 Aligned_cols=92 Identities=22% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHhccCCHHHHHhhhcCHHHHH-HHHHhccHHHHHHHHHHHHHHHHHHHH----HHH----HhhccHHHHHHHHHHHHHH
Q psy1409 6 SLLEHLDISELKELVNDEETFN-NFTKEATATLTTESNEQKEMLIASNKS----LAE----YNLSQEEALLEKKSQLLDL 76 (320)
Q Consensus 6 ~~L~~lS~eEL~~Ll~d~d~l~-~f~~~l~~~~vk~~~~~re~ll~~N~~----LAe----~NL~~ep~L~elr~~l~~~ 76 (320)
++|..+..-|.++|+++.+.++ .|+.+.. .+.++......+...... +.+ ..+...-.+.++..++...
T Consensus 2 ~eLgelG~VqF~Dln~~~~~fqr~f~~ev~--r~de~erkL~~le~~I~k~~~~~~~~~~~~~~~~~~~i~~le~~l~~l 79 (759)
T PF01496_consen 2 NELGELGLVQFRDLNEDVSAFQRKFVNEVR--RCDEMERKLRFLEEEIKKLKIPLPEKNDKPDAPKPKEIDELEEELEEL 79 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhcCCcEEEEECccchhHHHHHhhhccc--cHHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHH
Confidence 4677788888889988888655 3443332 233332222222222111 111 1111122444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy1409 77 NEQLTQLSKSVESKVELIKSHKN 99 (320)
Q Consensus 77 ~~el~~l~~~~~~~~~~~~~~~~ 99 (320)
.+++.++.+.++.+.++..++.+
T Consensus 80 e~~l~e~~~~~e~L~~~~~~L~E 102 (759)
T PF01496_consen 80 EEELRELNENLEKLEEELNELEE 102 (759)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554433
No 379
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=20.76 E-value=6.3e+02 Score=22.82 Aligned_cols=30 Identities=20% Similarity=0.179 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 66 LLEKKSQLLDLNEQLTQLSKSVESKVELIK 95 (320)
Q Consensus 66 L~elr~~l~~~~~el~~l~~~~~~~~~~~~ 95 (320)
|++.+..+.....++...++.-+.+...++
T Consensus 77 L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e 106 (205)
T PRK06231 77 LNKRKELIEAEINQANELKQQAQQLLENAK 106 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455444444444444444
No 380
>PF10167 NEP: Uncharacterised conserved protein; InterPro: IPR019320 This entry represents the uncharacterised protein family UPF0402. It contains a characteristic NEP sequence motif. Their function is not known.
Probab=20.70 E-value=2.1e+02 Score=23.99 Aligned_cols=50 Identities=24% Similarity=0.339 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CHHHHHHHHHHH
Q psy1409 64 EALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNV-STDTVLALLQTA 113 (320)
Q Consensus 64 p~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~-Sp~~Ll~lLq~a 113 (320)
|.|.++|.++.+...++.-.+.-.+.-..-.+.+.+.- +...+..+|+.+
T Consensus 44 P~lv~~k~~v~~~~~~~~g~~~D~eya~~aVksM~~a~~~F~nI~~lL~~s 94 (118)
T PF10167_consen 44 PKLVELKKEVQELSQELQGACYDLEYAISAVKSMKKAESSFSNIQELLKNS 94 (118)
T ss_pred HHHHHHHHHHHHHHHHhccceecHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56666666666666666655555555554444444433 344455555544
No 381
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=20.64 E-value=9.7e+02 Score=24.94 Aligned_cols=204 Identities=17% Similarity=0.145 Sum_probs=0.0
Q ss_pred cHHHHhccCC--HHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Q psy1409 3 NLESLLEHLD--ISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQL 80 (320)
Q Consensus 3 ~~~~~L~~lS--~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el 80 (320)
.|.|.+.+.. ..+++.+-..=..+..-+..+.. ..++....++.+.....+|-+-|| ...+. .+|...+..+
T Consensus 148 ~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~-~~~~~~~eld~L~~ql~ELe~~~l-~~~E~----e~L~~e~~~L 221 (563)
T TIGR00634 148 QLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQ-KEQELAQRLDFLQFQLEELEEADL-QPGED----EALEAEQQRL 221 (563)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhCCc-CCCcH----HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhc----C-----CHHHHHHHHHH--HHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHhhhhhH
Q psy1409 81 TQLSKSVESKVELIKSHKNN----V-----STDTVLALLQT--AASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEE 149 (320)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~----~-----Sp~~Ll~lLq~--a~~~~eeesE~k~l~~~~e~ll~~N~~LAe~NL~~ep 149 (320)
....+-.+....-+.-+.+. - ....+...|+. .....+-.....+...+.+++..+-+..+...---..
T Consensus 222 ~n~e~i~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~ 301 (563)
T TIGR00634 222 SNLEKLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPE 301 (563)
T ss_pred hCHHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1409 150 ALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNV----STDTVLALLQTAASEIEEESEKVPEE 212 (320)
Q Consensus 150 ~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~----sp~~l~~~Lq~a~~eaEeeSE~lae~ 212 (320)
+|+++...+.....-.++.....+.....++++.... +.+.-+..|+....++.++-..+|..
T Consensus 302 ~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~ 368 (563)
T TIGR00634 302 RLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVA 368 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
No 382
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=20.55 E-value=6.1e+02 Score=22.55 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=10.7
Q ss_pred CHHHHHHHhhHHHHHHHHh
Q psy1409 219 DVDKFLETFTPKRILMHLR 237 (320)
Q Consensus 219 dv~~Fl~~f~~~R~~~h~R 237 (320)
|+..-|..|......||.+
T Consensus 207 d~k~~l~~~~~~~i~~~~~ 225 (236)
T PF09325_consen 207 DFKSMLEEYAESQIEYQKK 225 (236)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555566666665555543
No 383
>KOG0993|consensus
Probab=20.53 E-value=9.5e+02 Score=24.76 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=15.4
Q ss_pred HHHHHhHHHHHHHHHHHhccCC
Q psy1409 232 ILMHLRRIKADKMAEMLTKRNS 253 (320)
Q Consensus 232 ~~~h~Rk~K~e~l~~~~~~~~~ 253 (320)
.+.+-|++|.-++++-|-.+.+
T Consensus 507 ~l~~e~~akv~rlq~eL~~seq 528 (542)
T KOG0993|consen 507 SLPNERPAKVCRLQHELLNSEQ 528 (542)
T ss_pred cccccchHHHHHHHHHHhhhcc
Confidence 4566788888888877765443
No 384
>smart00340 HALZ homeobox associated leucin zipper.
Probab=20.40 E-value=1.9e+02 Score=20.02 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy1409 44 QKEMLIASNKSLAEYNLSQEEALLEKKS 71 (320)
Q Consensus 44 ~re~ll~~N~~LAe~NL~~ep~L~elr~ 71 (320)
+=|-|..-.++|++.|--++-++.+||+
T Consensus 6 dCe~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 6 DCELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456667777888888777777776664
No 385
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=20.37 E-value=6.4e+02 Score=22.72 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1409 161 LNEQLTQLSKSVESKVELIKSH 182 (320)
Q Consensus 161 ~y~el~~L~~~~~~k~~kl~~~ 182 (320)
.+..+..+......+..++..+
T Consensus 113 ~~~~~~~~~~~L~k~~~~~~Kl 134 (216)
T cd07627 113 LWQYWQSAESELSKKKAQLEKL 134 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555554
No 386
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=20.24 E-value=6.5e+02 Score=22.74 Aligned_cols=156 Identities=19% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHH
Q psy1409 81 TQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLD 160 (320)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~ 160 (320)
+.|.+..+......+.-+...+.+.|--.=.-.....+--............+..+|+.|.+-.-..+.++.+++.++..
T Consensus 1 n~L~~~He~af~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 1 NELMKNHEKAFQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCHHHHHHHhhHHHHHHHHh
Q psy1409 161 ---LNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLR 237 (320)
Q Consensus 161 ---~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~FL~G~idv~~Fl~~f~~~R~~~h~R 237 (320)
....+..++..+....+++..+.-.+ ..|.......+.+-+.|-..|-.. |.+.-...--+..+...
T Consensus 81 y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~------evL~qr~~kle~ErdeL~~kf~~~---i~evqQk~~~kn~lLEk- 150 (201)
T PF13851_consen 81 YEKDKQSLQNLKARLKELEKELKDLKWEH------EVLEQRFEKLEQERDELYRKFESA---IQEVQQKTGLKNLLLEK- 150 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-
Q ss_pred HHHHHHHHHHH
Q psy1409 238 RIKADKMAEML 248 (320)
Q Consensus 238 k~K~e~l~~~~ 248 (320)
|...|.+.+
T Consensus 151 --Kl~~l~~~l 159 (201)
T PF13851_consen 151 --KLQALSEQL 159 (201)
T ss_pred --HHHHHHHHH
No 387
>PRK14153 heat shock protein GrpE; Provisional
Probab=20.23 E-value=6.6e+02 Score=22.83 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=16.2
Q ss_pred hhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHH
Q psy1409 119 EESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKK 155 (320)
Q Consensus 119 eesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr 155 (320)
+++++..+..+++.+-+....+-+..|-...+++.+|
T Consensus 31 ~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~r 67 (194)
T PRK14153 31 EEPEDSTADSETEKCREEIESLKEQLFRLAAEFDNFR 67 (194)
T ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444
No 388
>KOG1772|consensus
Probab=20.15 E-value=5.1e+02 Score=21.49 Aligned_cols=92 Identities=23% Similarity=0.267 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy1409 106 VLALLQTAASEIEEESET--TESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLD-LNEQLTQLSKSVESKVELIKSH 182 (320)
Q Consensus 106 Ll~lLq~a~~~~eeesE~--k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~-~y~el~~L~~~~~~k~~kl~~~ 182 (320)
|..||+.+--..+--++. ..+...++.-...-..+.+.-..++-++..+.+...- .-.-...+....+.+...++..
T Consensus 8 IqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qrE~efk~ke~~~~G~~~~~~~~~e~~t~~ki~~lk~~ 87 (108)
T KOG1772|consen 8 IQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREKEFKEKESAASGSQGALEKRLEQETDDKIAGLKTS 87 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 667777764333322222 2222222222222223344444445444444444321 2223345666777777777777
Q ss_pred hhcCCHHHHHHHHHH
Q psy1409 183 KNNVSTDTVLALLQT 197 (320)
Q Consensus 183 ~~~~sp~~l~~~Lq~ 197 (320)
+.+++.+.+..+|+.
T Consensus 88 ~~k~~~~Vv~~LL~~ 102 (108)
T KOG1772|consen 88 AQKNSDDVVDMLLKY 102 (108)
T ss_pred HHHhhHHHHHHHHHH
Confidence 777777777776653
No 389
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=20.15 E-value=3.6e+02 Score=27.54 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=11.2
Q ss_pred HHh-hhcCHHHHHHHHH
Q psy1409 16 LKE-LVNDEETFNNFTK 31 (320)
Q Consensus 16 L~~-Ll~d~d~l~~f~~ 31 (320)
|.+ |-+|++.+.+||.
T Consensus 362 l~~al~~np~~V~~lF~ 378 (462)
T PRK08032 362 LTKALKEDPAGVKALFV 378 (462)
T ss_pred HHHHHHHCHHHHHHHhC
Confidence 554 6677888888775
Done!