Query psy1409
Match_columns 320
No_of_seqs 229 out of 343
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 19:16:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1409.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1409hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p22_C Protein SRN2; endosome, 99.9 8.7E-26 3E-30 201.4 15.2 147 97-247 34-187 (192)
2 2p22_C Protein SRN2; endosome, 99.8 1E-19 3.5E-24 162.2 16.0 151 5-181 32-186 (192)
3 3na7_A HP0958; flagellar bioge 94.3 3 0.0001 37.7 23.6 94 124-232 93-186 (256)
4 3iot_A Maltose-binding protein 92.2 0.28 9.6E-06 47.1 7.3 31 205-235 342-372 (449)
5 3oja_B Anopheles plasmodium-re 91.5 4.7 0.00016 40.0 15.6 67 140-212 514-580 (597)
6 2dfs_A Myosin-5A; myosin-V, in 89.4 5.3 0.00018 43.6 14.7 30 55-84 919-948 (1080)
7 2jee_A YIIU; FTSZ, septum, coi 88.3 4.8 0.00016 30.6 9.5 55 39-100 23-77 (81)
8 3na7_A HP0958; flagellar bioge 86.4 18 0.00061 32.4 22.4 147 42-191 31-178 (256)
9 2jee_A YIIU; FTSZ, septum, coi 86.4 9.1 0.00031 29.0 10.7 10 86-95 56-65 (81)
10 2wt7_B Transcription factor MA 86.3 3.4 0.00012 32.0 7.9 82 6-97 1-88 (90)
11 3thf_A Protein shroom; coiled- 85.3 18 0.00063 31.5 13.3 82 63-158 103-185 (190)
12 3vkg_A Dynein heavy chain, cyt 84.6 67 0.0023 39.2 21.2 10 241-250 2129-2138(3245)
13 2pjw_H Uncharacterized protein 83.8 6.1 0.00021 30.4 8.3 70 102-185 11-85 (88)
14 3ghg_A Fibrinogen alpha chain; 83.5 23 0.0008 35.5 14.4 20 57-76 57-76 (562)
15 3hnw_A Uncharacterized protein 83.3 18 0.00062 29.8 14.6 103 78-180 28-134 (138)
16 3oja_B Anopheles plasmodium-re 83.2 24 0.0008 34.9 14.7 15 62-76 454-468 (597)
17 3m91_A Proteasome-associated A 71.5 12 0.00042 25.8 6.1 38 46-83 12-49 (51)
18 2dfs_A Myosin-5A; myosin-V, in 71.1 1.2E+02 0.0042 32.9 17.0 20 49-68 920-939 (1080)
19 3iot_A Maltose-binding protein 70.5 8.9 0.0003 36.4 7.1 26 177-202 345-371 (449)
20 3oja_A Leucine-rich immune mol 70.2 79 0.0027 30.3 14.2 47 126-172 433-479 (487)
21 1deq_A Fibrinogen (alpha chain 69.0 84 0.0029 30.2 13.3 16 60-75 63-78 (390)
22 2xs1_A Programmed cell death 6 68.7 60 0.002 33.4 13.3 46 189-237 656-704 (704)
23 2v71_A Nuclear distribution pr 66.2 66 0.0023 27.9 16.4 28 44-71 50-77 (189)
24 3vkg_A Dynein heavy chain, cyt 65.4 2.1E+02 0.0071 35.1 18.3 11 164-174 2043-2053(3245)
25 3trt_A Vimentin; cytoskeleton, 64.6 35 0.0012 24.7 7.9 52 44-97 17-68 (77)
26 1wlq_A Geminin; coiled-coil; 2 59.3 42 0.0014 25.4 7.4 52 126-181 29-80 (83)
27 2wvr_A Geminin; DNA replicatio 55.5 49 0.0017 29.1 8.2 56 126-185 106-161 (209)
28 3m91_A Proteasome-associated A 54.6 39 0.0013 23.2 6.0 37 132-168 13-49 (51)
29 1v74_B Colicin D immunity prot 54.6 9.7 0.00033 29.2 3.2 24 208-231 8-31 (87)
30 3hnw_A Uncharacterized protein 54.0 90 0.0031 25.5 10.0 48 45-92 77-124 (138)
31 2q13_A DCC-interacting protein 53.6 1.2E+02 0.0039 28.4 11.4 20 164-183 125-144 (385)
32 2pjw_H Uncharacterized protein 52.0 60 0.002 24.8 7.4 48 53-100 38-85 (88)
33 3a7p_A Autophagy protein 16; c 50.1 1.1E+02 0.0039 25.6 9.6 60 123-182 70-129 (152)
34 3o0z_A RHO-associated protein 50.0 1.2E+02 0.0041 25.8 17.6 39 57-95 6-44 (168)
35 4h8s_A DCC-interacting protein 49.1 1.2E+02 0.0042 28.4 10.9 22 165-186 149-170 (407)
36 1uii_A Geminin; human, DNA rep 46.2 78 0.0027 23.9 7.0 43 126-172 37-79 (83)
37 3rm1_A Protein S100-B; alpha-h 45.7 30 0.001 25.3 4.8 54 185-238 27-89 (92)
38 3he5_A Synzip1; heterodimeric 44.4 65 0.0022 21.2 5.7 37 38-74 5-41 (49)
39 2dq3_A Seryl-tRNA synthetase; 44.2 1.1E+02 0.0038 29.5 9.8 55 133-187 6-61 (425)
40 3dm5_A SRP54, signal recogniti 43.4 26 0.00088 34.3 5.1 27 206-233 317-343 (443)
41 1a4p_A S100A10; S100 family, E 43.3 96 0.0033 22.8 7.6 52 185-236 24-84 (96)
42 2f6m_A Suppressor protein STP2 42.8 82 0.0028 22.7 6.4 31 201-231 17-47 (65)
43 3a5t_A Transcription factor MA 41.5 1.9 6.4E-05 34.5 -2.7 30 6-45 11-40 (107)
44 2dq0_A Seryl-tRNA synthetase; 40.6 1.2E+02 0.0042 29.5 9.6 30 71-100 31-60 (455)
45 3a7p_A Autophagy protein 16; c 40.5 1.6E+02 0.0056 24.6 11.9 66 150-215 69-135 (152)
46 3tnu_B Keratin, type II cytosk 40.3 1.3E+02 0.0043 24.0 8.1 10 195-204 87-96 (129)
47 4hpq_C ATG17, KLTH0D15642P; au 40.1 2.6E+02 0.009 27.0 24.1 132 99-248 226-359 (413)
48 1ses_A Seryl-tRNA synthetase; 40.0 64 0.0022 31.1 7.3 32 71-102 28-59 (421)
49 3s9g_A Protein hexim1; cyclin 39.1 1.2E+02 0.0042 23.6 7.3 24 121-144 65-88 (104)
50 2zxx_A Geminin; coiled-coil, c 38.4 1.1E+02 0.0037 22.9 6.7 32 126-157 25-56 (79)
51 1m1j_A Fibrinogen alpha subuni 38.4 3E+02 0.01 27.1 13.7 71 140-223 109-179 (491)
52 4eto_A Protein S100-A4; calciu 38.2 1.2E+02 0.004 22.3 7.5 53 184-236 27-88 (93)
53 1wle_A Seryl-tRNA synthetase; 38.2 1.7E+02 0.0058 29.0 10.2 30 71-100 70-99 (501)
54 3oja_A Leucine-rich immune mol 37.9 1.8E+02 0.0061 27.8 10.3 44 44-87 436-479 (487)
55 2xdj_A Uncharacterized protein 37.7 1.3E+02 0.0043 22.6 8.8 42 58-99 21-62 (83)
56 2fxo_A Myosin heavy chain, car 37.4 1.6E+02 0.0053 23.5 16.1 33 149-181 90-122 (129)
57 3ol1_A Vimentin; structural ge 37.2 1.5E+02 0.0052 23.4 10.3 31 125-155 24-54 (119)
58 2dq0_A Seryl-tRNA synthetase; 36.9 1.3E+02 0.0043 29.4 9.0 52 134-185 7-60 (455)
59 1ses_A Seryl-tRNA synthetase; 36.5 1.2E+02 0.0041 29.1 8.7 33 155-187 27-59 (421)
60 1deq_A Fibrinogen (alpha chain 35.8 1.6E+02 0.0056 28.2 9.1 31 123-153 150-180 (390)
61 2wvr_A Geminin; DNA replicatio 35.0 1.4E+02 0.0049 26.2 7.9 55 42-100 107-161 (209)
62 1wlq_A Geminin; coiled-coil; 2 34.8 1.5E+02 0.005 22.4 7.2 51 42-96 30-80 (83)
63 2yy0_A C-MYC-binding protein; 34.5 89 0.003 21.4 5.3 29 44-72 20-48 (53)
64 3trt_A Vimentin; cytoskeleton, 34.2 1.3E+02 0.0044 21.6 8.7 53 125-179 13-65 (77)
65 3swk_A Vimentin; cytoskeleton, 33.9 1.5E+02 0.005 22.2 8.8 57 124-180 3-59 (86)
66 3nmd_A CGMP dependent protein 33.6 1.4E+02 0.0048 21.9 7.3 30 66-95 21-50 (72)
67 2vwa_A Putative uncharacterize 33.3 31 0.0011 26.6 3.0 31 5-35 36-66 (101)
68 2ccm_A Calexcitin; EF hand, ca 32.5 1.9E+02 0.0063 22.9 8.7 132 96-228 25-170 (191)
69 2yy0_A C-MYC-binding protein; 31.5 68 0.0023 22.0 4.3 32 64-95 19-50 (53)
70 1xaw_A Occludin; coiled-coil, 30.7 2.3E+02 0.0078 23.4 9.4 84 152-250 48-134 (140)
71 3n22_A Protein S100-A2; EF-han 30.4 1.7E+02 0.0057 21.8 8.4 53 185-237 29-90 (98)
72 2xdj_A Uncharacterized protein 30.2 1.7E+02 0.0059 21.8 9.0 48 52-99 22-69 (83)
73 3kl4_A SRP54, signal recogniti 30.1 31 0.001 33.6 3.2 50 184-233 281-343 (433)
74 1k2h_A S100A1, S-100 protein, 30.1 1.1E+02 0.0036 21.5 5.6 52 185-236 27-87 (93)
75 2zjr_V 50S ribosomal protein L 29.6 1.5E+02 0.0052 21.1 6.8 56 6-82 4-59 (67)
76 1xk4_C Calgranulin B; S100 fam 29.3 1.8E+02 0.0062 21.8 7.2 50 185-234 30-89 (113)
77 1qls_A S100C protein, calgizza 28.9 1.2E+02 0.0042 21.5 5.8 52 185-236 31-91 (99)
78 1tu3_F RAB GTPase binding effe 28.1 1.2E+02 0.0043 22.4 5.4 65 49-113 4-68 (79)
79 1vp7_A Exodeoxyribonuclease VI 28.0 2.1E+02 0.0072 22.2 7.2 39 204-242 37-75 (100)
80 1sjj_A Actinin; 3-helix bundle 27.5 5.1E+02 0.018 26.5 17.3 32 219-250 639-673 (863)
81 3twe_A Alpha4H; unknown functi 27.4 75 0.0026 18.5 3.3 21 75-95 5-25 (27)
82 1uii_A Geminin; human, DNA rep 27.0 1.9E+02 0.0065 21.8 6.4 32 42-73 38-69 (83)
83 3bbo_Z Ribosomal protein L29; 25.7 1.9E+02 0.0064 24.7 6.9 40 45-84 86-125 (173)
84 2zxx_A Geminin; coiled-coil, c 25.7 2.1E+02 0.0071 21.3 6.4 31 42-72 26-56 (79)
85 4e61_A Protein BIM1; EB1-like 25.4 1.3E+02 0.0043 23.8 5.4 37 59-95 6-42 (106)
86 2wuj_A Septum site-determining 25.3 1E+02 0.0035 21.3 4.4 33 22-62 21-53 (57)
87 3v2d_2 50S ribosomal protein L 24.5 2E+02 0.0069 20.8 6.8 39 45-83 29-67 (72)
88 2pjw_V Vacuolar protein sortin 24.5 2.3E+02 0.008 21.5 7.1 48 52-99 35-82 (91)
89 1psr_A Psoriasin, S100A7; EF-h 24.5 1.3E+02 0.0045 22.2 5.4 53 184-236 24-87 (100)
90 4gkw_A Spindle assembly abnorm 24.2 3E+02 0.01 22.6 17.2 118 51-188 47-166 (167)
91 1evs_A Oncostatin M; 4-helix b 23.6 2.8E+02 0.0096 23.5 7.5 28 187-214 66-93 (187)
92 3m9b_A Proteasome-associated A 23.5 96 0.0033 28.1 5.0 40 45-84 56-95 (251)
93 3nso_A Protein S100-A3; EF-han 23.2 1E+02 0.0036 23.3 4.6 53 184-236 27-88 (101)
94 3rkg_A Magnesium transporter M 23.1 2.6E+02 0.0089 25.2 7.9 84 4-92 154-248 (261)
95 3qne_A Seryl-tRNA synthetase, 22.9 1.6E+02 0.0056 29.0 7.0 29 71-99 33-61 (485)
96 3j21_W 50S ribosomal protein L 22.6 2.2E+02 0.0076 20.5 7.5 39 45-83 22-61 (72)
97 3ohw_B Phycobilisome LCM core- 22.4 1.3E+02 0.0043 25.2 5.2 23 206-228 50-72 (148)
98 1s94_A S-syntaxin; three helix 22.3 3.3E+02 0.011 22.4 11.8 67 24-92 36-102 (180)
99 3mq9_A Bone marrow stromal ant 21.6 5.1E+02 0.017 24.3 12.0 31 51-81 360-390 (471)
100 4emc_A Monopolin complex subun 21.4 2E+02 0.0068 25.0 6.3 65 24-89 2-66 (190)
101 1eq1_A Apolp-III, apolipophori 21.3 3.5E+02 0.012 22.3 9.3 45 191-236 104-161 (166)
102 3zwh_A Protein S100-A4; Ca-bin 21.2 2.7E+02 0.0091 20.9 7.5 52 185-236 31-91 (104)
103 2p22_A Suppressor protein STP2 20.9 3.9E+02 0.013 22.7 15.9 43 197-239 122-165 (174)
104 2y5i_A S100Z, S100 calcium bin 20.8 2.3E+02 0.0077 20.9 6.0 54 185-238 28-90 (99)
105 1r73_A TM1492, 50S ribosomal p 20.8 2.3E+02 0.0079 20.0 7.8 56 7-83 5-60 (66)
106 2w83_C C-JUN-amino-terminal ki 20.5 2.7E+02 0.0091 20.7 9.0 72 123-207 4-75 (77)
107 3nph_B Phycobilisome 32.1 kDa 20.3 59 0.002 27.2 2.7 44 185-228 9-60 (148)
108 3dd4_A KV channel-interacting 20.2 2.5E+02 0.0087 23.4 7.0 147 66-230 52-215 (229)
109 3iz5_c 60S ribosomal protein L 20.2 3.4E+02 0.012 21.8 8.6 39 45-83 27-65 (124)
110 1m1j_A Fibrinogen alpha subuni 20.1 5.2E+02 0.018 25.4 9.7 39 57-95 111-149 (491)
No 1
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=99.93 E-value=8.7e-26 Score=201.40 Aligned_cols=147 Identities=18% Similarity=0.172 Sum_probs=138.3
Q ss_pred hhhcCCHHHHHHHHHHH-H---HHHHhhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 97 HKNNVSTDTVLALLQTA-A---SEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSV 172 (320)
Q Consensus 97 ~~~~~Sp~~Ll~lLq~a-~---~~~eeesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~ 172 (320)
....+|.+.|..+|++. . ..+.+.+.+++++.+++++ +++|+.++++++++++.|.++..++.+++.|+.+|
T Consensus 34 ~L~~LS~~eL~~LL~~~~dlL~~~v~~l~~~q~~~~~~e~l----~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~ 109 (192)
T 2p22_C 34 GINLLSSKEIIDLIQTHRHQLELYVTKFNPLTDFAGKIHAF----RDQFKQLEENFEDLHEQKDKVQALLENARILESKY 109 (192)
T ss_dssp GGGSCTTHHHHHHHHHCHHHHHHHGGGGSCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhChHHHHHHHHHhchhHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677899999999997 4 6777888999999999999 88999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHhhcCCHHHHHHHHHHHHHHHHHHHhHHHHHHhcC--CCCHHHHHHHhhHHHHHHHHhHHHHHHHHHH
Q psy1409 173 ESKVELIK-SHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNG--TIDVDKFLETFTPKRILMHLRRIKADKMAEM 247 (320)
Q Consensus 173 ~~k~~kl~-~~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~FL~G--~idv~~Fl~~f~~~R~~~h~Rk~K~e~l~~~ 247 (320)
..|+++++ .++++|||++|+++|++++.++|++|++|+++|++| +++|++||.+|++.|++||+||.|.++|.+.
T Consensus 110 ~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~~F~~~~~e~dv~~Fl~~y~~~R~~yH~RreK~~rw~e~ 187 (192)
T 2p22_C 110 VASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKNYLDIRTQYHLRREKLATWDKQ 187 (192)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999995 799999999999999999999999999999999998 8999999999999999999999999999863
No 2
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=99.83 E-value=1e-19 Score=162.21 Aligned_cols=151 Identities=13% Similarity=0.076 Sum_probs=142.6
Q ss_pred HHHhccCCHHHHHhhhcCH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q psy1409 5 ESLLEHLDISELKELVNDE-ETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQL 83 (320)
Q Consensus 5 ~~~L~~lS~eEL~~Ll~d~-d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l 83 (320)
...|++||.+||.+|++|+ +.++.|+.+++ .+++++..++++ +++|+.|+.++|+|+++|+.|..++.+++.|
T Consensus 32 P~~L~~LS~~eL~~LL~~~~dlL~~~v~~l~--~~q~~~~~~e~l----~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L 105 (192)
T 2p22_C 32 PEGINLLSSKEIIDLIQTHRHQLELYVTKFN--PLTDFAGKIHAF----RDQFKQLEENFEDLHEQKDKVQALLENARIL 105 (192)
T ss_dssp SSGGGSCTTHHHHHHHHHCHHHHHHHGGGGS--CCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhCCHHHHHHHHhChHHHHHHHHHhch--hHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999 99999999998 699999999999 8999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHhhhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHhhhh--hHHHHHHHHHHHH
Q psy1409 84 SKSVESKVELI-KSHKNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYNLSQ--EEALLEKKSQLLD 160 (320)
Q Consensus 84 ~~~~~~~~~~~-~~~~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~~LAe~NL~~--ep~Leelr~ql~~ 160 (320)
..+|..+.+.+ +.+++.|||++|+.+|+.+++++|++|+. |++.|+.+ +.++++|. .
T Consensus 106 ~~~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~----------------l~~~F~~~~~e~dv~~Fl----~ 165 (192)
T 2p22_C 106 ESKYVASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQ----------------LETTTRSIDSADDLDQFI----K 165 (192)
T ss_dssp HHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHH----------------HHHSCSCCCCHHHHHHHH----H
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHH----------------HHHHHcCCcccchHHHHH----H
Confidence 99999998888 58999999999999999999999999999 99999998 89999998 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1409 161 LNEQLTQLSKSVESKVELIKS 181 (320)
Q Consensus 161 ~y~el~~L~~~~~~k~~kl~~ 181 (320)
+|.+.|+++|.+++|..+.++
T Consensus 166 ~y~~~R~~yH~RreK~~rw~e 186 (192)
T 2p22_C 166 NYLDIRTQYHLRREKLATWDK 186 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 888899999999999988765
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.28 E-value=3 Score=37.70 Aligned_cols=94 Identities=11% Similarity=0.096 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q psy1409 124 TESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIE 203 (320)
Q Consensus 124 k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~eaE 203 (320)
..+..+++.+-..+..+-+.-+.....++.++..+ ..+...+..+...+..+.. ..+...+.+........
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l-------~~~~~~l~~~~~~l~~~~~--~~~~~~~e~~~e~~~l~ 163 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQ-------EDLKKEMLELEKLALELES--LVENEVKNIKETQQIIF 163 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 34444444443333334344444444444444333 3333334333333333311 12333444555555555
Q ss_pred HHHhHHHHHHhcCCCCHHHHHHHhhHHHH
Q psy1409 204 EESEKVPEEFLNGTIDVDKFLETFTPKRI 232 (320)
Q Consensus 204 eeSE~lae~FL~G~idv~~Fl~~f~~~R~ 232 (320)
...+.++. .|+ .+.|..|...|+
T Consensus 164 ~~r~~l~~-----~i~-~~lL~~Yerir~ 186 (256)
T 3na7_A 164 KKKEDLVE-----KTE-PKIYSFYERIRR 186 (256)
T ss_dssp HHHHHHHH-----TSC-HHHHHHHHHHHH
T ss_pred HHHHHHHh-----cCC-HHHHHHHHHHHH
Confidence 55555444 445 567777777664
No 4
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=92.20 E-value=0.28 Score=47.06 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=22.7
Q ss_pred HHhHHHHHHhcCCCCHHHHHHHhhHHHHHHH
Q psy1409 205 ESEKVPEEFLNGTIDVDKFLETFTPKRILMH 235 (320)
Q Consensus 205 eSE~lae~FL~G~idv~~Fl~~f~~~R~~~h 235 (320)
.-......++.|.+++++.|+.+.+.-+-.-
T Consensus 342 ~~~~~~~~~~~G~~~~eeal~~~~~~~~~i~ 372 (449)
T 3iot_A 342 AVRTAVINAASGRQTVDAALAAAQTNAAAMA 372 (449)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3344455778999999999999988764433
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.46 E-value=4.7 Score=39.97 Aligned_cols=67 Identities=9% Similarity=0.087 Sum_probs=31.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1409 140 LAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEE 212 (320)
Q Consensus 140 LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~ 212 (320)
+.+..-..+..+..+++++.++-.+++.++.+....+++.++.... +..|+........+-..+.+.
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~------~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 514 LKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAK------QAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhH------HHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444445555555555555554444222 244444555555555555444
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=89.37 E-value=5.3 Score=43.55 Aligned_cols=30 Identities=10% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 55 LAEYNLSQEEALLEKKSQLLDLNEQLTQLS 84 (320)
Q Consensus 55 LAe~NL~~ep~L~elr~~l~~~~~el~~l~ 84 (320)
+.+.|..++.+|.++...|.+.-.+...|.
T Consensus 919 l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~ 948 (1080)
T 2dfs_A 919 YKKLHIGLENKIMQLQRKIDEQNKEYKSLL 948 (1080)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666555554444444443
No 7
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=88.26 E-value=4.8 Score=30.57 Aligned_cols=55 Identities=18% Similarity=0.113 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1409 39 TESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNN 100 (320)
Q Consensus 39 k~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~ 100 (320)
.-++.+.++|...|..|+..|=. +|+....+-.+..+|++.......+++.+.++
T Consensus 23 ~lLqmEieELKekN~~L~~e~~e-------~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 23 TLLQMEIEELKEKNNSLSQEVQN-------AQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455666666666666665544 44444444444444444444445555554443
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=86.42 E-value=18 Score=32.44 Aligned_cols=147 Identities=12% Similarity=0.071 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH-hh
Q psy1409 42 NEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIE-EE 120 (320)
Q Consensus 42 ~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~~e-ee 120 (320)
..+.+.+-.....+...=-..+..+..++.++...-.++..+..+.....+++......--.++|..-+......+. -+
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE 110 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQAN 110 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445666777777777777777777777777777777665544444455444444432222 23
Q ss_pred hhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHH
Q psy1409 121 SETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTV 191 (320)
Q Consensus 121 sE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l 191 (320)
.+..++...++.+-..-..+...--..+..+...+.++... +..+......+..+...+.....++.+
T Consensus 111 ~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~---~~e~~~e~~~l~~~r~~l~~~i~~~lL 178 (256)
T 3na7_A 111 REIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENE---VKNIKETQQIIFKKKEDLVEKTEPKIY 178 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 33344444444443333333333334444555555444333 334445555566666667777766543
No 9
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=86.35 E-value=9.1 Score=29.00 Aligned_cols=10 Identities=10% Similarity=-0.137 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy1409 86 SVESKVELIK 95 (320)
Q Consensus 86 ~~~~~~~~~~ 95 (320)
..+.+...+.
T Consensus 56 en~qLk~E~~ 65 (81)
T 2jee_A 56 ENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 10
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=86.25 E-value=3.4 Score=31.99 Aligned_cols=82 Identities=12% Similarity=0.122 Sum_probs=41.2
Q ss_pred HHhccCCHHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHH----HHHHHHH--HHhhccHHHHHHHHHHHHHHHHH
Q psy1409 6 SLLEHLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLI----ASNKSLA--EYNLSQEEALLEKKSQLLDLNEQ 79 (320)
Q Consensus 6 ~~L~~lS~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll----~~N~~LA--e~NL~~ep~L~elr~~l~~~~~e 79 (320)
++|-++|+.||..+|. .++.++|..+.+.|-.+. +.|..-= .+...++.....+..++.....|
T Consensus 1 deLv~msVreLN~~L~----------gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e 70 (90)
T 2wt7_B 1 DQLVSMSVRELNRHLR----------GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQE 70 (90)
T ss_dssp CHHHHSCHHHHHTTCT----------TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHc----------CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999883 344445665555443332 1111110 12233344444444444444555
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy1409 80 LTQLSKSVESKVELIKSH 97 (320)
Q Consensus 80 l~~l~~~~~~~~~~~~~~ 97 (320)
...+....+....+++.+
T Consensus 71 ~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 71 VSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 555555555555554443
No 11
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=85.27 E-value=18 Score=31.51 Aligned_cols=82 Identities=24% Similarity=0.195 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHH
Q psy1409 63 EEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNV-STDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLA 141 (320)
Q Consensus 63 ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~-Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~~LA 141 (320)
...|.+.|..|...++++++|++.++....-...+..+| +.+.+ .+-+.+-..+..|+.+-++|.
T Consensus 103 r~sL~~K~~~L~~Q~EDAkeLKe~ldRRe~~V~~iL~~~L~~eql--------------~DY~~fv~mKa~Ll~eqReLd 168 (190)
T 3thf_A 103 RGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGLLAKNLSADMC--------------ADYDYFINMKAKLIADARDLA 168 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH--------------HHHHHHHHHHHHHHHHHHhHH
Confidence 456888888899999999999999998888777665443 33332 223444455566666667777
Q ss_pred HHhhhhhHHHHHHHHHH
Q psy1409 142 EYNLSQEEALLEKKSQL 158 (320)
Q Consensus 142 e~NL~~ep~Leelr~ql 158 (320)
++---++..|..+++.+
T Consensus 169 dkIklgeEQL~~L~~sL 185 (190)
T 3thf_A 169 VRIKGSEEQLSSLSDAL 185 (190)
T ss_dssp HHHHHHHHHHHHHTTC-
T ss_pred HHHHhhHHHHHHHHHhh
Confidence 66666666666665544
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=84.56 E-value=67 Score=39.15 Aligned_cols=10 Identities=20% Similarity=0.009 Sum_probs=5.8
Q ss_pred HHHHHHHHhc
Q psy1409 241 ADKMAEMLTK 250 (320)
Q Consensus 241 ~e~l~~~~~~ 250 (320)
.+.|...++.
T Consensus 2129 ~~~W~~~l~~ 2138 (3245)
T 3vkg_A 2129 MRKWMIRLDS 2138 (3245)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3456666654
No 13
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=83.82 E-value=6.1 Score=30.38 Aligned_cols=70 Identities=9% Similarity=0.088 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHH-----HHHhhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 102 STDTVLALLQTAAS-----EIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKV 176 (320)
Q Consensus 102 Sp~~Ll~lLq~a~~-----~~eeesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~ 176 (320)
..+.|+++|+.... .+-+++|+ ..|-..-+...|.|..+.....++++++..|...+-...
T Consensus 11 ~vd~Ll~~L~~~~p~~~~~~~~~d~ei--------------q~LY~~v~~lRPkL~~li~kysqKk~eL~~Ln~kl~~a~ 76 (88)
T 2pjw_H 11 TIDQLHNSLNAASKTGNSNEVLQDPHI--------------GDMYGSVTPLRPQVTRMLGKYAKEKEDMLSLRQVLANAE 76 (88)
T ss_dssp HHHHHHHHHHHHHTTCCTHHHHSCHHH--------------HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCCCchhhhcccHHH--------------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888887632 55566666 337778899999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q psy1409 177 ELIKSHKNN 185 (320)
Q Consensus 177 ~kl~~~~~~ 185 (320)
.-++++.+.
T Consensus 77 ~~Yd~lle~ 85 (88)
T 2pjw_H 77 RSYNQLMDR 85 (88)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 988887654
No 14
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=83.49 E-value=23 Score=35.48 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=11.4
Q ss_pred HHhhccHHHHHHHHHHHHHH
Q psy1409 57 EYNLSQEEALLEKKSQLLDL 76 (320)
Q Consensus 57 e~NL~~ep~L~elr~~l~~~ 76 (320)
++|.....+|.++|+++.+.
T Consensus 57 kqErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 57 EVNQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHHHHTHH
T ss_pred hhcCcHHHHHHHHHHHHHHH
Confidence 44445555676666665543
No 15
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=83.26 E-value=18 Score=29.83 Aligned_cols=103 Identities=10% Similarity=0.089 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh--hhcCCHHHHH--HHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHH
Q psy1409 78 EQLTQLSKSVESKVELIKSH--KNNVSTDTVL--ALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLE 153 (320)
Q Consensus 78 ~el~~l~~~~~~~~~~~~~~--~~~~Sp~~Ll--~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Lee 153 (320)
+-+..+..-++.+.+..... ...++.+.+. +-|..+...+....+...+..+.+.+-..+.+|=+...+.+..++.
T Consensus 28 e~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~ 107 (138)
T 3hnw_A 28 EYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAES 107 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677777777744 6777766554 4455555555555555666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 154 KKSQLLDLNEQLTQLSKSVESKVELIK 180 (320)
Q Consensus 154 lr~ql~~~y~el~~L~~~~~~k~~kl~ 180 (320)
++.++...-.+...|..+...++..+.
T Consensus 108 ~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 108 SAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665555555555555555554443
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.20 E-value=24 Score=34.85 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=5.9
Q ss_pred cHHHHHHHHHHHHHH
Q psy1409 62 QEEALLEKKSQLLDL 76 (320)
Q Consensus 62 ~ep~L~elr~~l~~~ 76 (320)
.+..+.+++..+...
T Consensus 454 l~~e~~~~~~~i~~l 468 (597)
T 3oja_B 454 LEAEVNELRAEVQQL 468 (597)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444433333
No 17
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=71.51 E-value=12 Score=25.76 Aligned_cols=38 Identities=39% Similarity=0.397 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q psy1409 46 EMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQL 83 (320)
Q Consensus 46 e~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l 83 (320)
.++-..|..|+.+|-.+..-|.+.|.+|....+++..|
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777888888888888888988888888888877765
No 18
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=71.08 E-value=1.2e+02 Score=32.90 Aligned_cols=20 Identities=10% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhccHHHHHH
Q psy1409 49 IASNKSLAEYNLSQEEALLE 68 (320)
Q Consensus 49 l~~N~~LAe~NL~~ep~L~e 68 (320)
...|..|-..-.+++-+|++
T Consensus 920 ~~~~~~LE~kl~eLq~rL~~ 939 (1080)
T 2dfs_A 920 KKLHIGLENKIMQLQRKIDE 939 (1080)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 19
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=70.54 E-value=8.9 Score=36.42 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=14.3
Q ss_pred HHHHH-HhhcCCHHHHHHHHHHHHHHH
Q psy1409 177 ELIKS-HKNNVSTDTVLALLQTAASEI 202 (320)
Q Consensus 177 ~kl~~-~~~~~sp~~l~~~Lq~a~~ea 202 (320)
..+.. +.+..+++..+..++..+.++
T Consensus 345 ~~~~~~~~G~~~~eeal~~~~~~~~~i 371 (449)
T 3iot_A 345 TAVINAASGRQTVDAALAAAQTNAAAM 371 (449)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 33444 455567777666555555443
No 20
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.16 E-value=79 Score=30.33 Aligned_cols=47 Identities=21% Similarity=0.114 Sum_probs=26.4
Q ss_pred hHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 126 SNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSV 172 (320)
Q Consensus 126 l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~ 172 (320)
+..+.+..-..+..+.+.|-..++.++++..++.+.+..++.+..+-
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVRE 479 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHH
Confidence 44444445555555666666666666666666655555555554443
No 21
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=68.99 E-value=84 Score=30.22 Aligned_cols=16 Identities=6% Similarity=0.133 Sum_probs=8.0
Q ss_pred hccHHHHHHHHHHHHH
Q psy1409 60 LSQEEALLEKKSQLLD 75 (320)
Q Consensus 60 L~~ep~L~elr~~l~~ 75 (320)
-....+|+.||+.|..
T Consensus 63 r~~~~rIe~L~~~L~~ 78 (390)
T 1deq_A 63 QDFTSRINKLRDSLFN 78 (390)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3344555555555544
No 22
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=68.73 E-value=60 Score=33.42 Aligned_cols=46 Identities=28% Similarity=0.369 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH--HHhcCCCCHHHHHHHhhHHH-HHHHHh
Q psy1409 189 DTVLALLQTAASEIEEESEKVPE--EFLNGTIDVDKFLETFTPKR-ILMHLR 237 (320)
Q Consensus 189 ~~l~~~Lq~a~~eaEeeSE~lae--~FL~G~idv~~Fl~~f~~~R-~~~h~R 237 (320)
+..+..|..|...-.+-...|.+ +|-+ ++...|..|+.+. ++++.|
T Consensus 656 e~~~~~l~~ay~~y~el~~~l~eG~~FY~---~L~~~~~~~~~~~~df~~~R 704 (704)
T 2xs1_A 656 EEVLKNLATAYDNFVELVANLKEGTKFYN---ELTEILVRFQNKCSDIVFAR 704 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHhcC
Confidence 56677888888888888887754 7777 4778888888877 777766
No 23
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=66.18 E-value=66 Score=27.94 Aligned_cols=28 Identities=18% Similarity=0.010 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy1409 44 QKEMLIASNKSLAEYNLSQEEALLEKKS 71 (320)
Q Consensus 44 ~re~ll~~N~~LAe~NL~~ep~L~elr~ 71 (320)
+.+.+=..|+.|-..|..+.-.++..|.
T Consensus 50 eL~~~Ek~~~~L~~~~~~L~~E~e~~k~ 77 (189)
T 2v71_A 50 QLVQAEQRNRDLQADNQRLKYEVEALKE 77 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 24
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=65.39 E-value=2.1e+02 Score=35.09 Aligned_cols=11 Identities=0% Similarity=0.169 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q psy1409 164 QLTQLSKSVES 174 (320)
Q Consensus 164 el~~L~~~~~~ 174 (320)
++..|+.+|++
T Consensus 2043 ~l~~L~~~~~~ 2053 (3245)
T 3vkg_A 2043 SIATYKEEYAT 2053 (3245)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 25
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=64.56 E-value=35 Score=24.72 Aligned_cols=52 Identities=19% Similarity=0.072 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1409 44 QKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSH 97 (320)
Q Consensus 44 ~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~ 97 (320)
.-|.+...|+.=|+. -++.++++++..+....+++...+....++....+.+
T Consensus 17 QYE~ia~knr~EaE~--~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L 68 (77)
T 3trt_A 17 QYESVAAKNLQEAEE--WYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSL 68 (77)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443332 2566777887777777777777776666666555543
No 26
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=59.28 E-value=42 Score=25.42 Aligned_cols=52 Identities=13% Similarity=0.196 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 126 SNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKS 181 (320)
Q Consensus 126 l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~ 181 (320)
-+...++.+.+|+.|.+..-.++.+|..++ ....+++.|....+.+-.-.+.
T Consensus 29 Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk----~en~~L~elA~~~q~la~~i~~ 80 (83)
T 1wlq_A 29 RRKALYEALKENEKLHKEIEQKDSEIARLR----KENKDLAEVAEHVQYMAEVIER 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999998888888888888 4445577777766555544443
No 27
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=55.51 E-value=49 Score=29.14 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy1409 126 SNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNN 185 (320)
Q Consensus 126 l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~ 185 (320)
-+..++..|.+|+.|.+..-.++.+|..++ ....+++.|....+.+..-++.+.+.
T Consensus 106 RR~AL~eaLeEN~~Lh~~ie~l~eEi~~Lk----eEn~eLkeLae~~q~la~vi~~l~~~ 161 (209)
T 2wvr_A 106 RRKALYEALKENEKLHKEIEQKDNEIARLK----KENKELAEVAEHVQYMAELIERLNGE 161 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455678889999999999988888888888 55556888888888887777777655
No 28
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=54.64 E-value=39 Score=23.24 Aligned_cols=37 Identities=41% Similarity=0.404 Sum_probs=25.4
Q ss_pred HHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy1409 132 MLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQL 168 (320)
Q Consensus 132 ~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L 168 (320)
.+-..|..|+.+|-.....|.+.|.++.....++..|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777777777777777776666655544
No 29
>1v74_B Colicin D immunity protein; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: a.24.20.1 PDB: 1tfk_B* 1tfo_B
Probab=54.63 E-value=9.7 Score=29.22 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.4
Q ss_pred HHHHHHhcCCCCHHHHHHHhhHHH
Q psy1409 208 KVPEEFLNGTIDVDKFLETFTPKR 231 (320)
Q Consensus 208 ~lae~FL~G~idv~~Fl~~f~~~R 231 (320)
.+|..|++|.|+.+.|.+.|+..+
T Consensus 8 ~la~~Fv~~~IsA~~F~ee~wr~e 31 (87)
T 1v74_B 8 DLAKLFLASKITAIEFSERICVER 31 (87)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHH
Confidence 479999999999999999887766
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=53.98 E-value=90 Score=25.54 Aligned_cols=48 Identities=6% Similarity=0.077 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 45 KEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVE 92 (320)
Q Consensus 45 re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~ 92 (320)
.+.+......+-+..-++.-.|..++-++.....++..+++.+..+..
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333
No 31
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=53.64 E-value=1.2e+02 Score=28.36 Aligned_cols=20 Identities=5% Similarity=-0.006 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy1409 164 QLTQLSKSVESKVELIKSHK 183 (320)
Q Consensus 164 el~~L~~~~~~k~~kl~~~~ 183 (320)
.++.++..|+....+++...
T Consensus 125 ~~ke~kk~fek~~~~yd~al 144 (385)
T 2q13_A 125 EILTLKEVFQIASNDHDAAI 144 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555433
No 32
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=51.98 E-value=60 Score=24.76 Aligned_cols=48 Identities=4% Similarity=-0.014 Sum_probs=40.1
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1409 53 KSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNN 100 (320)
Q Consensus 53 ~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~ 100 (320)
..|-..-++.+|+|..+=..-..+++++..|.++|-...+-++++.+.
T Consensus 38 q~LY~~v~~lRPkL~~li~kysqKk~eL~~Ln~kl~~a~~~Yd~lle~ 85 (88)
T 2pjw_H 38 GDMYGSVTPLRPQVTRMLGKYAKEKEDMLSLRQVLANAERSYNQLMDR 85 (88)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788899999999999999999999999998888888887653
No 33
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=50.08 E-value=1.1e+02 Score=25.58 Aligned_cols=60 Identities=7% Similarity=-0.067 Sum_probs=29.3
Q ss_pred hhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 123 TTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSH 182 (320)
Q Consensus 123 ~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~ 182 (320)
+..+..++..+...+..+.+..-.+.-.++.++.++...-.++..+......+++.-+.+
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555444444444455555555444444455555444444444444
No 34
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=49.97 E-value=1.2e+02 Score=25.83 Aligned_cols=39 Identities=21% Similarity=0.112 Sum_probs=20.5
Q ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 57 EYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIK 95 (320)
Q Consensus 57 e~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~ 95 (320)
+.+..++-.|.++...|..-.+....++....++.+...
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~ 44 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSIS 44 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666555555444433
No 35
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=49.10 E-value=1.2e+02 Score=28.40 Aligned_cols=22 Identities=5% Similarity=-0.093 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q psy1409 165 LTQLSKSVESKVELIKSHKNNV 186 (320)
Q Consensus 165 l~~L~~~~~~k~~kl~~~~~~~ 186 (320)
++.++..|+...++++....+|
T Consensus 149 ~ke~kK~Fek~~~~Yd~~l~Ky 170 (407)
T 4h8s_A 149 VSTLKDLFGLASNEHDLSMAKY 170 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555444433
No 36
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=46.25 E-value=78 Score=23.95 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 126 SNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSV 172 (320)
Q Consensus 126 l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~ 172 (320)
-+..++..+.+|+.|.+..-.++.++..+| ...++++.|....
T Consensus 37 RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk----~en~eL~elae~~ 79 (83)
T 1uii_A 37 RRKALYEALKENEKLHKEIEQKDNEIARLK----KENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 345677788899999999888888888877 4444455555443
No 37
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=45.71 E-value=30 Score=25.27 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=35.7
Q ss_pred cCCHHHHHHHHHHH------HHHHHHHHhHHHHHH---hcCCCCHHHHHHHhhHHHHHHHHhH
Q psy1409 185 NVSTDTVLALLQTA------ASEIEEESEKVPEEF---LNGTIDVDKFLETFTPKRILMHLRR 238 (320)
Q Consensus 185 ~~sp~~l~~~Lq~a------~~eaEeeSE~lae~F---L~G~idv~~Fl~~f~~~R~~~h~Rk 238 (320)
..+.+-+...|+.. ..-.+++.+.+-..+ -+|.|+.++|+.-+......||..-
T Consensus 27 ~Is~~EL~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~I~f~EF~~~~~~l~~~~~~~~ 89 (92)
T 3rm1_A 27 KLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFVAMITTACHEFF 89 (92)
T ss_dssp SBCHHHHHHHHHHHCTTTSCCCCSHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHHHGGGGC
T ss_pred eECHHHHHHHHHHHhhhhccCcccHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 45566666655541 112345555665554 3689999999999988888888643
No 38
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=44.35 E-value=65 Score=21.17 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy1409 38 TTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLL 74 (320)
Q Consensus 38 vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~ 74 (320)
|-++..+...+-.+|+.|-+.||-+..-|.-+..+++
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeia 41 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIA 41 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHH
Confidence 5566778888999999999999988766654444433
No 39
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=44.16 E-value=1.1e+02 Score=29.46 Aligned_cols=55 Identities=13% Similarity=0.213 Sum_probs=37.4
Q ss_pred HHHhhHHHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy1409 133 LIASNKSLAEYNLSQEEAL-LEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVS 187 (320)
Q Consensus 133 ll~~N~~LAe~NL~~ep~L-eelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~s 187 (320)
++.+|-...+.||.+.-.- .+...++.....+.+++..+.+.+..+.+.++....
T Consensus 6 ~~r~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~ 61 (425)
T 2dq3_A 6 LIREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIG 61 (425)
T ss_dssp HHHHCHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455766777777655321 223456668888888888888888888888776654
No 40
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=43.43 E-value=26 Score=34.31 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=24.0
Q ss_pred HhHHHHHHhcCCCCHHHHHHHhhHHHHH
Q psy1409 206 SEKVPEEFLNGTIDVDKFLETFTPKRIL 233 (320)
Q Consensus 206 SE~lae~FL~G~idv~~Fl~~f~~~R~~ 233 (320)
.+ +++++..|+.+++||+.+++..++.
T Consensus 317 ~~-~~~k~~~~~f~l~d~~~q~~~~~km 343 (443)
T 3dm5_A 317 EE-DIERFLRGKFTLKDMYAQLEAMRKM 343 (443)
T ss_dssp HH-HHHHHHTTCCCHHHHHHHHHHHHTT
T ss_pred HH-HHHHHhhCCcCHHHHHHHHHHHHhc
Confidence 44 9999999999999999999997764
No 41
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II, calcium/phospholipid binding protein, calcium-phospholipid protein complex; 2.25A {Homo sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Probab=43.26 E-value=96 Score=22.78 Aligned_cols=52 Identities=10% Similarity=0.210 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHHHHH------HHHHHHhHHHHHH---hcCCCCHHHHHHHhhHHHHHHHH
Q psy1409 185 NVSTDTVLALLQTAAS------EIEEESEKVPEEF---LNGTIDVDKFLETFTPKRILMHL 236 (320)
Q Consensus 185 ~~sp~~l~~~Lq~a~~------eaEeeSE~lae~F---L~G~idv~~Fl~~f~~~R~~~h~ 236 (320)
..+.+-+...|+.... -.+++.+.|-..+ -+|.|+.++|+.-.......||.
T Consensus 24 ~Is~~El~~~l~~~~~~~lg~~~~~~ev~~l~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~ 84 (96)
T 1a4p_A 24 YLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGLTIACND 84 (96)
T ss_dssp SBCHHHHHHHHHHHCHHHHHHSCCTTHHHHHHHHHCTTSSSCBCHHHHHHHHHHHHHHHHH
T ss_pred eECHHHHHHHHHHHcccccccccCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 5677778777765321 1344556665555 26889999999887765565553
No 42
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=42.80 E-value=82 Score=22.69 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=23.0
Q ss_pred HHHHHHhHHHHHHhcCCCCHHHHHHHhhHHH
Q psy1409 201 EIEEESEKVPEEFLNGTIDVDKFLETFTPKR 231 (320)
Q Consensus 201 eaEeeSE~lae~FL~G~idv~~Fl~~f~~~R 231 (320)
..|+--..|.+.+-.|.|+++.|++..+..-
T Consensus 17 AieDaiy~L~~aL~~g~I~l~~ylK~vR~La 47 (65)
T 2f6m_A 17 ALTDTIEALSRMLHRGTIPLDTFVKQGRELA 47 (65)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3455556666777789999999999865543
No 43
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=41.52 E-value=1.9 Score=34.48 Aligned_cols=30 Identities=10% Similarity=0.191 Sum_probs=19.4
Q ss_pred HHhccCCHHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHH
Q psy1409 6 SLLEHLDISELKELVNDEETFNNFTKEATATLTTESNEQK 45 (320)
Q Consensus 6 ~~L~~lS~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~r 45 (320)
++|-++|+.||..+|. .++.+++..+...|
T Consensus 11 ~~Lv~m~v~elN~~L~----------~Ls~~e~~~lK~~R 40 (107)
T 3a5t_A 11 EELVTMSVRELNQHLR----------GLSKEEIIQLKQRR 40 (107)
T ss_dssp HHHHHSCHHHHHHTTT----------TCCHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHh----------CCCHHHHHHHHHHH
Confidence 4678889999988873 34444555554433
No 44
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=40.61 E-value=1.2e+02 Score=29.45 Aligned_cols=30 Identities=10% Similarity=0.086 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1409 71 SQLLDLNEQLTQLSKSVESKVELIKSHKNN 100 (320)
Q Consensus 71 ~~l~~~~~el~~l~~~~~~~~~~~~~~~~~ 100 (320)
.++....++.+++..+.+.+..+.+.++..
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~ 60 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVE 60 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777766553
No 45
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=40.51 E-value=1.6e+02 Score=24.62 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHHHhHHHHHHhc
Q psy1409 150 ALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNV-STDTVLALLQTAASEIEEESEKVPEEFLN 215 (320)
Q Consensus 150 ~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~-sp~~l~~~Lq~a~~eaEeeSE~lae~FL~ 215 (320)
.|..++.++...-.+++.+...++.|.+-.+.+.+-+ +...-+..+.......+.|-+.|.++|+.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555444433322 22222345555556666666666666653
No 46
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=40.25 E-value=1.3e+02 Score=24.00 Aligned_cols=10 Identities=20% Similarity=0.345 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy1409 195 LQTAASEIEE 204 (320)
Q Consensus 195 Lq~a~~eaEe 204 (320)
|..+...+-.
T Consensus 87 lE~eL~~~r~ 96 (129)
T 3tnu_B 87 LEEALQKAKQ 96 (129)
T ss_dssp HHHHHHHHHH
T ss_pred HHHhHHHHHH
Confidence 3333333333
No 47
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=40.13 E-value=2.6e+02 Score=26.96 Aligned_cols=132 Identities=12% Similarity=0.135 Sum_probs=60.0
Q ss_pred hcCCHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHhhHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 99 NNVSTDTVLALLQTAASEIEEESET-TESNEQKEMLIASNKSLAEYNL-SQEEALLEKKSQLLDLNEQLTQLSKSVESKV 176 (320)
Q Consensus 99 ~~~Sp~~Ll~lLq~a~~~~eeesE~-k~l~~~~e~ll~~N~~LAe~NL-~~ep~Leelr~ql~~~y~el~~L~~~~~~k~ 176 (320)
..+|.++-..+|++-..-+.|.++| ++++...+. +..|..-+...| .+......+.+.+.....+.+ .+.+-.
T Consensus 226 ~~~s~~e~~elleVv~~Da~EL~~V~~eL~~~~~~-i~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~----~~~e~l 300 (413)
T 4hpq_C 226 RSVSPEDAQNLFEIVERDDKDLAAINSLLQDAAID-VASFVRKVNMLLDERDADKAKMQATLSKLLTELR----KHEEYI 300 (413)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred cCCChHhHHHHHHHHHcchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHH
Confidence 6667776667777666666676666 344433333 444444344444 234444444433333333322 111111
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCHHHHHHHhhHHHHHHHHhHHHHHHHHHHH
Q psy1409 177 ELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRIKADKMAEML 248 (320)
Q Consensus 177 ~kl~~~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~FL~G~idv~~Fl~~f~~~R~~~h~Rk~K~e~l~~~~ 248 (320)
.-++.+.+.+ ...++....-..+-+.|-.- .+.|...|...-.-.+.||.-.+++..++
T Consensus 301 ~i~~~i~e~l------~~fk~~~~~~~~~~~~L~~~-------Y~~f~~aY~~lL~Ev~RRr~~~~~~~~i~ 359 (413)
T 4hpq_C 301 SVFEGISALI------QKFKASCLEDIRQTRNLLDF-------YANFERSYHNLLKEVKRRKETAAKLSQIL 359 (413)
T ss_dssp HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222221 12222222222223333222 35666677666666666666555555444
No 48
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=39.96 E-value=64 Score=31.14 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy1409 71 SQLLDLNEQLTQLSKSVESKVELIKSHKNNVS 102 (320)
Q Consensus 71 ~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~S 102 (320)
.++....++.+++..+++.+..+.++++....
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~ 59 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888888888888887776543
No 49
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=39.08 E-value=1.2e+02 Score=23.62 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=14.3
Q ss_pred hhhhhhHHHHHHHHHhhHHHHHHh
Q psy1409 121 SETTESNEQKEMLIASNKSLAEYN 144 (320)
Q Consensus 121 sE~k~l~~~~e~ll~~N~~LAe~N 144 (320)
..+++|..+.+.|.++|..|-..|
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666665554
No 50
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=38.40 E-value=1.1e+02 Score=22.93 Aligned_cols=32 Identities=6% Similarity=0.064 Sum_probs=23.7
Q ss_pred hHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHH
Q psy1409 126 SNEQKEMLIASNKSLAEYNLSQEEALLEKKSQ 157 (320)
Q Consensus 126 l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~q 157 (320)
-+...++.+.+|+.|.+..-.++..|..++.+
T Consensus 25 RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeE 56 (79)
T 2zxx_A 25 RRKALYEALKENEKLHKEIEQKDSEIARLRKE 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888777777777777744
No 51
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=38.35 E-value=3e+02 Score=27.12 Aligned_cols=71 Identities=10% Similarity=0.134 Sum_probs=45.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCC
Q psy1409 140 LAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTID 219 (320)
Q Consensus 140 LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~FL~G~id 219 (320)
+-+.+-+++-++..++..+...+..++.|+.-.+....+.+ +|..++...=+-|..=..+.++-+||
T Consensus 109 ~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQ-------------RLE~dI~~q~~~Cr~pC~r~~~y~VD 175 (491)
T 1m1j_A 109 YGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMK-------------RLEVDIDIKIRACKGSCARSFDYQVD 175 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHTTTTTBSSCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhcchhhhhHHhhhc
Confidence 55556667777888887777777777777776665554443 44555555555555555566777777
Q ss_pred HHHH
Q psy1409 220 VDKF 223 (320)
Q Consensus 220 v~~F 223 (320)
++.+
T Consensus 176 ~~~Y 179 (491)
T 1m1j_A 176 KEGY 179 (491)
T ss_dssp TTTT
T ss_pred HHHH
Confidence 6644
No 52
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Probab=38.23 E-value=1.2e+02 Score=22.32 Aligned_cols=53 Identities=9% Similarity=0.142 Sum_probs=37.9
Q ss_pred hcCCHHHHHHHHHHHHH------HHHHHHhHHHHHH---hcCCCCHHHHHHHhhHHHHHHHH
Q psy1409 184 NNVSTDTVLALLQTAAS------EIEEESEKVPEEF---LNGTIDVDKFLETFTPKRILMHL 236 (320)
Q Consensus 184 ~~~sp~~l~~~Lq~a~~------eaEeeSE~lae~F---L~G~idv~~Fl~~f~~~R~~~h~ 236 (320)
+..|.+-+...|+.... ..+++.+.+-..+ -+|.|+.++|+.-....-..||.
T Consensus 27 G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~~~~~~~~~~~ 88 (93)
T 4eto_A 27 FKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNE 88 (93)
T ss_dssp TSBCHHHHHHHHHHHCGGGC---CCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHHHHHH
T ss_pred CeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 35677777777765321 2456666666655 36899999999988887788885
No 53
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=38.15 E-value=1.7e+02 Score=28.96 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1409 71 SQLLDLNEQLTQLSKSVESKVELIKSHKNN 100 (320)
Q Consensus 71 ~~l~~~~~el~~l~~~~~~~~~~~~~~~~~ 100 (320)
.++....++.+++..+.+.+..+.++++..
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~ 99 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEA 99 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777766553
No 54
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.91 E-value=1.8e+02 Score=27.76 Aligned_cols=44 Identities=23% Similarity=0.132 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 44 QKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSV 87 (320)
Q Consensus 44 ~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~ 87 (320)
+.+.....+..|.+.|-..++.|.++..++.+.+..++.+..+-
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
T 3oja_A 436 DWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVRE 479 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHH
Confidence 34444455555556666666666666666666666665555443
No 55
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=37.73 E-value=1.3e+02 Score=22.58 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=27.5
Q ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1409 58 YNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKN 99 (320)
Q Consensus 58 ~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~ 99 (320)
-++.+...|+.++.++......+.++.-..+.+.+++++++.
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~ 62 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILL 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777776666666666666666666666554
No 56
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=37.40 E-value=1.6e+02 Score=23.51 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 149 EALLEKKSQLLDLNEQLTQLSKSVESKVELIKS 181 (320)
Q Consensus 149 p~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~ 181 (320)
.++++.-..........+.+...+..+.++++.
T Consensus 90 ~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 90 KRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444443
No 57
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=37.21 E-value=1.5e+02 Score=23.35 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHhhHHHHHHhhhhhHHHHHHH
Q psy1409 125 ESNEQKEMLIASNKSLAEYNLSQEEALLEKK 155 (320)
Q Consensus 125 ~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr 155 (320)
++....+.+...|..|--..-..+..+++||
T Consensus 24 ~LR~qid~~~~e~a~l~leldn~~~~~edfk 54 (119)
T 3ol1_A 24 ELRRQVDQLTNDKARVEVERDNLAEDIMRLR 54 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333333344444444
No 58
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=36.87 E-value=1.3e+02 Score=29.40 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=30.7
Q ss_pred HHhhHHHHHHhhhhhHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy1409 134 IASNKSLAEYNLSQEEA-L-LEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNN 185 (320)
Q Consensus 134 l~~N~~LAe~NL~~ep~-L-eelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~ 185 (320)
+..|-...+.||.+.-. - .+...++.....+.+++..+.+.+..+.+.++..
T Consensus 7 ~r~n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~ 60 (455)
T 2dq0_A 7 IRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVE 60 (455)
T ss_dssp HHHCHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554421 0 1223455577777888888887777777776554
No 59
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=36.52 E-value=1.2e+02 Score=29.15 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy1409 155 KSQLLDLNEQLTQLSKSVESKVELIKSHKNNVS 187 (320)
Q Consensus 155 r~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~s 187 (320)
..++.....+.+++..+.+.+..+.+.++....
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~ 59 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345558889999999999999999998887765
No 60
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=35.81 E-value=1.6e+02 Score=28.24 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=13.7
Q ss_pred hhhhHHHHHHHHHhhHHHHHHhhhhhHHHHH
Q psy1409 123 TTESNEQKEMLIASNKSLAEYNLSQEEALLE 153 (320)
Q Consensus 123 ~k~l~~~~e~ll~~N~~LAe~NL~~ep~Lee 153 (320)
.|.|...++-.+..-..-....++.+.+++.
T Consensus 150 iqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ 180 (390)
T 1deq_A 150 MKRLEVDIDIKIRSCKGSCSRALEHKVDLED 180 (390)
T ss_pred HHHHHHHHHHHhcccccccchhhhhhccHHH
Confidence 3444444444444444334444444444433
No 61
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=34.97 E-value=1.4e+02 Score=26.16 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1409 42 NEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNN 100 (320)
Q Consensus 42 ~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~ 100 (320)
....++.+.+|+.|.+..-.++..|..+|.+. .+|++|.+..+.+..-++.+.+.
T Consensus 107 R~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn----~eLkeLae~~q~la~vi~~l~~~ 161 (209)
T 2wvr_A 107 RKALYEALKENEKLHKEIEQKDNEIARLKKEN----KELAEVAEHVQYMAELIERLNGE 161 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcC
Confidence 45678889999999988777777775555544 56677777777777777777664
No 62
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=34.77 E-value=1.5e+02 Score=22.42 Aligned_cols=51 Identities=12% Similarity=0.183 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 42 NEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKS 96 (320)
Q Consensus 42 ~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~ 96 (320)
....++.+.+|+.|-+..-.++..|..+|.+. .+|+.|.+....+..-.+.
T Consensus 30 r~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en----~~L~elA~~~q~la~~i~~ 80 (83)
T 1wlq_A 30 RKALYEALKENEKLHKEIEQKDSEIARLRKEN----KDLAEVAEHVQYMAEVIER 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 55678889999999887666666665554443 4455555554444444433
No 63
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=34.53 E-value=89 Score=21.41 Aligned_cols=29 Identities=17% Similarity=0.046 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy1409 44 QKEMLIASNKSLAEYNLSQEEALLEKKSQ 72 (320)
Q Consensus 44 ~re~ll~~N~~LAe~NL~~ep~L~elr~~ 72 (320)
+.|.|..+|..|-.++-.+.-++.+++++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544444444444444444443
No 64
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=34.18 E-value=1.3e+02 Score=21.56 Aligned_cols=53 Identities=17% Similarity=0.091 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 125 ESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELI 179 (320)
Q Consensus 125 ~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl 179 (320)
++....|.+...|+.=|+.-- ...++++.......-..++..+.+..++...+
T Consensus 13 eiRaQYE~ia~knr~EaE~~y--~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~i 65 (77)
T 3trt_A 13 DVRQQYESVAAKNLQEAEEWY--KSKFADLSEAANRNNDALRQAKQESTEYRRQV 65 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344444555555554444322 33455555555544444444444444444333
No 65
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=33.91 E-value=1.5e+02 Score=22.19 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=27.4
Q ss_pred hhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 124 TESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIK 180 (320)
Q Consensus 124 k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~ 180 (320)
.+|+...+.+...|-.|.-.--..+..+++||.....-...-..+...+..+.+.++
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD 59 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD 59 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 455556666666665554444445556666663333333333333333333333333
No 66
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=33.58 E-value=1.4e+02 Score=21.90 Aligned_cols=30 Identities=17% Similarity=0.106 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 66 LLEKKSQLLDLNEQLTQLSKSVESKVELIK 95 (320)
Q Consensus 66 L~elr~~l~~~~~el~~l~~~~~~~~~~~~ 95 (320)
|.+|+..|..+.+++++..+..+++.+++.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ 50 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELD 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443
No 67
>2vwa_A Putative uncharacterized protein PF13_0012; unknown function; HET: PTY; 2.5A {Plasmodium falciparum}
Probab=33.33 E-value=31 Score=26.59 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=28.0
Q ss_pred HHHhccCCHHHHHhhhcCHHHHHHHHHhccH
Q psy1409 5 ESLLEHLDISELKELVNDEETFNNFTKEATA 35 (320)
Q Consensus 5 ~~~L~~lS~eEL~~Ll~d~d~l~~f~~~l~~ 35 (320)
...+.+||.++=.-+++|-|++..|+.+|++
T Consensus 36 qhHF~~LSn~Qq~y~ind~dY~rkiVQ~L~E 66 (101)
T 2vwa_A 36 QKHFEHLSNDQKDSHVNNMEYMQKFVQGLQE 66 (101)
T ss_dssp HHHHHHSCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHhchHHHHHHHHHHHHh
Confidence 4568899999999999999999999999864
No 68
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=32.50 E-value=1.9e+02 Score=22.93 Aligned_cols=132 Identities=8% Similarity=0.074 Sum_probs=63.8
Q ss_pred HhhhcCCHHHHHHHHHHHHHHHH---hhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHH-------H
Q psy1409 96 SHKNNVSTDTVLALLQTAASEIE---EESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQ-------L 165 (320)
Q Consensus 96 ~~~~~~Sp~~Ll~lLq~a~~~~e---eesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~e-------l 165 (320)
.-.+..+.+++...|..-..... ...+++.+..........--..+..|-.+....+++..-+...... .
T Consensus 25 d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~~~~~~~~~~~~~~ 104 (191)
T 2ccm_A 25 NHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLP 104 (191)
T ss_dssp TCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCCeeeHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeECHHHHHHHHHHHhccccchhhch
Confidence 34677788888877765532211 1112222221111111111123344445566677776444332110 0
Q ss_pred HHHHHHHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHHHHHhHHHHHH---hcCCCCHHHHHHHhh
Q psy1409 166 TQLSKSVESKVELIKS-HKNNVSTDTVLALLQTAASEIEEESEKVPEEF---LNGTIDVDKFLETFT 228 (320)
Q Consensus 166 ~~L~~~~~~k~~kl~~-~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~F---L~G~idv~~Fl~~f~ 228 (320)
......+....+.++. -.+..+.+-+...|+... -.+++.+.+-..| -+|.|+.++|+.-+.
T Consensus 105 ~~~~~~~~~~F~~~D~d~dG~I~~~E~~~~l~~~g-~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~ 170 (191)
T 2ccm_A 105 EWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYG-IPKSDCDAAFDTLSDGGKTMVTREIFARLWT 170 (191)
T ss_dssp HHHHHHHHHHHHHHCTTCSSBCCHHHHHHHHHTTT-CCHHHHHHHHHHHTTTTTSCCBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC-CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Confidence 1112223333344433 345567777766664432 3345556666655 368899999987654
No 69
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=31.51 E-value=68 Score=22.00 Aligned_cols=32 Identities=6% Similarity=0.102 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 64 EALLEKKSQLLDLNEQLTQLSKSVESKVELIK 95 (320)
Q Consensus 64 p~L~elr~~l~~~~~el~~l~~~~~~~~~~~~ 95 (320)
...+.||.++.+...++..|.++.+++++++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666666666666666666554
No 70
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=30.67 E-value=2.3e+02 Score=23.38 Aligned_cols=84 Identities=11% Similarity=0.078 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhHHHHHHhc---CCCCHHHHHHHhh
Q psy1409 152 LEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLN---GTIDVDKFLETFT 228 (320)
Q Consensus 152 eelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~FL~---G~idv~~Fl~~f~ 228 (320)
..-+..|...|.+++.|...+....+++.++... +..|.... .+...|++.|-. -+.+ -.|+
T Consensus 48 ~rYK~~F~~dy~EYk~Lhaev~~v~~~F~~Ld~~------L~~l~~~s----~e~~~i~~EY~r~k~~K~d-----p~y~ 112 (140)
T 1xaw_A 48 QLYKRNFDTGLQEYKSLQSVLDEINKELSRLDKE------LDDYREES----EEYMAAADEYNRLKQVKGS-----ADYK 112 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHSCTTS----HHHHHHHHHHHHHHHHHTS-----HHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------HHhCCCCC----HHHHHHHHHHHHHHHhcCC-----cHHH
Confidence 3455667778888888888887777766665322 11111111 111123333211 0111 2378
Q ss_pred HHHHHHHHhHHHHHHHHHHHhc
Q psy1409 229 PKRILMHLRRIKADKMAEMLTK 250 (320)
Q Consensus 229 ~~R~~~h~Rk~K~e~l~~~~~~ 250 (320)
+++..|+--+-|+.+++.++..
T Consensus 113 ekK~Rc~yL~~KLsHIK~lI~~ 134 (140)
T 1xaw_A 113 SKKNHCKQLKSKLSHIKKMVGD 134 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888777788888887764
No 71
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=30.40 E-value=1.7e+02 Score=21.75 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=37.8
Q ss_pred cCCHHHHHHHHHHHHHH------HHHHHhHHHHHH---hcCCCCHHHHHHHhhHHHHHHHHh
Q psy1409 185 NVSTDTVLALLQTAASE------IEEESEKVPEEF---LNGTIDVDKFLETFTPKRILMHLR 237 (320)
Q Consensus 185 ~~sp~~l~~~Lq~a~~e------aEeeSE~lae~F---L~G~idv~~Fl~~f~~~R~~~h~R 237 (320)
..|.+-+...|+..... .+++.+.+-..+ -+|.|+.++|+.-....-..||..
T Consensus 29 ~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~~~~~~~~~~~~ 90 (98)
T 3n22_A 29 KLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFLALITVMSNDF 90 (98)
T ss_dssp SBCHHHHHHHHHHHCHHHHCSSCCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHHHHHHC
T ss_pred eECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 56777777777653221 356666666665 468999999999888777888863
No 72
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=30.20 E-value=1.7e+02 Score=21.83 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=33.8
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1409 52 NKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKN 99 (320)
Q Consensus 52 N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~ 99 (320)
.-.|..+.-.++..+..||.++....-++..++++..+....++....
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~ 69 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSS 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556666778888888888888888888888877766666654433
No 73
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=30.10 E-value=31 Score=33.62 Aligned_cols=50 Identities=8% Similarity=0.197 Sum_probs=23.9
Q ss_pred hcCCHHHHHHHH----------HHHHHHH-HHHHhHHHHHHhcC--CCCHHHHHHHhhHHHHH
Q psy1409 184 NNVSTDTVLALL----------QTAASEI-EEESEKVPEEFLNG--TIDVDKFLETFTPKRIL 233 (320)
Q Consensus 184 ~~~sp~~l~~~L----------q~a~~ea-EeeSE~lae~FL~G--~idv~~Fl~~f~~~R~~ 233 (320)
..|+|+.+..+| ..+.... +++.+++++++++| +.++++|+.+++..++.
T Consensus 281 ~~f~p~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~km 343 (433)
T 3kl4_A 281 ETFNAKRFVSRILGMGDIESILEKVKGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKM 343 (433)
T ss_dssp EECCHHHHHHHHHCSSHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHhcCCchHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Confidence 578888777642 2222222 23458899999999 89999999999987764
No 74
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=30.08 E-value=1.1e+02 Score=21.52 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=33.6
Q ss_pred cCCHHHHHHHHHHH-----H-HHHHHHHhHHHHHH---hcCCCCHHHHHHHhhHHHHHHHH
Q psy1409 185 NVSTDTVLALLQTA-----A-SEIEEESEKVPEEF---LNGTIDVDKFLETFTPKRILMHL 236 (320)
Q Consensus 185 ~~sp~~l~~~Lq~a-----~-~eaEeeSE~lae~F---L~G~idv~~Fl~~f~~~R~~~h~ 236 (320)
..+..-+...|+.. . .-.+++.+.+...+ -+|.|+.++|+.-+......||.
T Consensus 27 ~I~~~el~~~l~~~~~~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~~~~~~~ 87 (93)
T 1k2h_A 27 KLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVACNN 87 (93)
T ss_dssp SCCHHHHHHHHHHHTHHHHHCCCCHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHTCC
T ss_pred ccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 56677777666642 1 12345555665555 36889999999988776666653
No 75
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=29.63 E-value=1.5e+02 Score=21.07 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=37.9
Q ss_pred HHhccCCHHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Q psy1409 6 SLLEHLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQ 82 (320)
Q Consensus 6 ~~L~~lS~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~ 82 (320)
.+|+++|.+||.+.+.+- +.+++.=--..|-.-|+.-.+|...|..++...+-+++
T Consensus 4 ~elr~~s~~EL~~~l~el---------------------k~ELf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl~e 59 (67)
T 2zjr_V 4 SEMRNLQATDFAKEIDAR---------------------KKELMELRFQAAAGQLAQPHRVRQLRREVAQLNTVKAE 59 (67)
T ss_dssp TTTTTSCHHHHHHHHHTH---------------------HHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH---------------------HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 467888888888655443 22233333344567788888999999988887776654
No 76
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1irj_A*
Probab=29.30 E-value=1.8e+02 Score=21.83 Aligned_cols=50 Identities=10% Similarity=0.191 Sum_probs=32.4
Q ss_pred cCCHHHHHHHHHHHHH-------HHHHHHhHHHHHH---hcCCCCHHHHHHHhhHHHHHH
Q psy1409 185 NVSTDTVLALLQTAAS-------EIEEESEKVPEEF---LNGTIDVDKFLETFTPKRILM 234 (320)
Q Consensus 185 ~~sp~~l~~~Lq~a~~-------eaEeeSE~lae~F---L~G~idv~~Fl~~f~~~R~~~ 234 (320)
..+.+-+...|+.... -.+.+.+.|-..+ -+|.|+.++|+.-+......|
T Consensus 30 ~Is~~El~~~l~~~lg~~~~~~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~~~~~ 89 (113)
T 1xk4_C 30 TLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLMARLTWAS 89 (113)
T ss_dssp SBCHHHHHHHHHHHTTTTTTTGGGCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHhhhhhcccccCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHHHHHHH
Confidence 5677778777763322 1355666666665 268899999998775544333
No 77
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100 family, EF-hand protein, complex (ligand/annexin), ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2 PDB: 1nsh_A
Probab=28.94 E-value=1.2e+02 Score=21.48 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=33.2
Q ss_pred cCCHHHHHHHHHHHH------HHHHHHHhHHHHHH---hcCCCCHHHHHHHhhHHHHHHHH
Q psy1409 185 NVSTDTVLALLQTAA------SEIEEESEKVPEEF---LNGTIDVDKFLETFTPKRILMHL 236 (320)
Q Consensus 185 ~~sp~~l~~~Lq~a~------~eaEeeSE~lae~F---L~G~idv~~Fl~~f~~~R~~~h~ 236 (320)
..+.+-+...|+... .-.+.+.+.+-..+ -+|.|+.++|+.-+......||.
T Consensus 31 ~I~~~el~~~l~~~~~~~~~~~~~~~~~~~l~~~~D~~~dg~I~~~EF~~~~~~~~~~~~~ 91 (99)
T 1qls_A 31 KISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLIGGLAIACHD 91 (99)
T ss_dssp CBCHHHHHHHHTTTSHHHHHHCCCTHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHcchhccccCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 456666666655211 12344555555554 36889999999988877777775
No 78
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=28.13 E-value=1.2e+02 Score=22.41 Aligned_cols=65 Identities=8% Similarity=0.083 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q psy1409 49 IASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTA 113 (320)
Q Consensus 49 l~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a 113 (320)
..+|..|.+.|.+.+.++..|+++|...-.=-+.-..-...++-+++++-..-+.+.+...|.+.
T Consensus 4 ~~~k~~Le~~~~e~k~kv~~LQ~eLdtsE~VQrDFVkLSQsLQvqLE~IRqadt~~qvr~Il~e~ 68 (79)
T 1tu3_F 4 GSAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADSLERIRAILNDT 68 (79)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTC--
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHccC
Confidence 45666777777777777777777665531111111111223444556666666777776666543
No 79
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=28.03 E-value=2.1e+02 Score=22.19 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=28.8
Q ss_pred HHHhHHHHHHhcCCCCHHHHHHHhhHHHHHHHHhHHHHH
Q psy1409 204 EESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRIKAD 242 (320)
Q Consensus 204 eeSE~lae~FL~G~idv~~Fl~~f~~~R~~~h~Rk~K~e 242 (320)
.+-|.|+.+.-+|++++++-+..|.+-..+.-..+.+.+
T Consensus 37 ~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~~~L~ 75 (100)
T 1vp7_A 37 AELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLA 75 (100)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667788778999999999999988866555444433
No 80
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=27.50 E-value=5.1e+02 Score=26.46 Aligned_cols=32 Identities=3% Similarity=0.016 Sum_probs=17.2
Q ss_pred CHHHHHHHhhHHHHHHHHhHH---HHHHHHHHHhc
Q psy1409 219 DVDKFLETFTPKRILMHLRRI---KADKMAEMLTK 250 (320)
Q Consensus 219 dv~~Fl~~f~~~R~~~h~Rk~---K~e~l~~~~~~ 250 (320)
++.+.+.+|.....-.-.++. ..+.+...+.+
T Consensus 639 ~le~~l~~~~~~~~el~~~~~~i~~l~~l~~~L~~ 673 (863)
T 1sjj_A 639 TLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQE 673 (863)
T ss_dssp SSHHHHHHHHHHHHHHHTTGGGHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 577777777776544333333 34444455554
No 81
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=27.43 E-value=75 Score=18.47 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1409 75 DLNEQLTQLSKSVESKVELIK 95 (320)
Q Consensus 75 ~~~~el~~l~~~~~~~~~~~~ 95 (320)
+.|.|+..|+++...+.+++.
T Consensus 5 elykeledlqerlrklrkklr 25 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 457777777777766666553
No 82
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.04 E-value=1.9e+02 Score=21.79 Aligned_cols=32 Identities=9% Similarity=0.047 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy1409 42 NEQKEMLIASNKSLAEYNLSQEEALLEKKSQL 73 (320)
Q Consensus 42 ~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l 73 (320)
....++.+.+|+.|-+..-.++..+..+|..+
T Consensus 38 R~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en 69 (83)
T 1uii_A 38 RKALYEALKENEKLHKEIEQKDNEIARLKKEN 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55778889999999887666666665555443
No 83
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=25.74 E-value=1.9e+02 Score=24.73 Aligned_cols=40 Identities=13% Similarity=-0.008 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 45 KEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLS 84 (320)
Q Consensus 45 re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~ 84 (320)
+.+|+.=--+.|-..|++-.+|...|..++...+.+++-.
T Consensus 86 KkELFnLRfQkATGQLeNpsrIR~VRRdIARIkTVLrEre 125 (173)
T 3bbo_Z 86 KGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTVKRERE 125 (173)
T ss_dssp TTHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 4445544455677778999999999999999877776543
No 84
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=25.70 E-value=2.1e+02 Score=21.34 Aligned_cols=31 Identities=6% Similarity=0.068 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy1409 42 NEQKEMLIASNKSLAEYNLSQEEALLEKKSQ 72 (320)
Q Consensus 42 ~~~re~ll~~N~~LAe~NL~~ep~L~elr~~ 72 (320)
....++.+.+|+.|-+.--.++..|..+|.+
T Consensus 26 R~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeE 56 (79)
T 2zxx_A 26 RKALYEALKENEKLHKEIEQKDSEIARLRKE 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888899998888555555555544443
No 85
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.43 E-value=1.3e+02 Score=23.80 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=0.0
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 59 NLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIK 95 (320)
Q Consensus 59 NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~ 95 (320)
|++.+-.|...+.++.+...++..|+..++.+.+..+
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 86
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=25.27 E-value=1e+02 Score=21.25 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=17.3
Q ss_pred CHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy1409 22 DEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQ 62 (320)
Q Consensus 22 d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ 62 (320)
|++..++|+..+ ..+.+.+..+|..|-+++-..
T Consensus 21 ~~~EVD~FLd~v--------~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 21 DEDEVNEFLAQV--------RKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp EHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 455566665543 334555566666665554433
No 87
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=24.50 E-value=2e+02 Score=20.76 Aligned_cols=39 Identities=23% Similarity=0.161 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q psy1409 45 KEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQL 83 (320)
Q Consensus 45 re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l 83 (320)
+.+++.=--..|-..|+.-.+|...|..++...+.+++-
T Consensus 29 k~ELf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl~er 67 (72)
T 3v2d_2 29 KRELMELRFQASIGQLSQNHKIRDLKRQIARLLTVLNEK 67 (72)
T ss_dssp HHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 334444444456667788888888888888877766653
No 88
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=24.49 E-value=2.3e+02 Score=21.50 Aligned_cols=48 Identities=8% Similarity=0.079 Sum_probs=36.8
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1409 52 NKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKN 99 (320)
Q Consensus 52 N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~ 99 (320)
...|...=...+|+|...=..-..||+++..+.+++-...+-++.+.+
T Consensus 35 LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~a~rlYD~lLE 82 (91)
T 2pjw_V 35 LQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISEIMNIYDRLLE 82 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667788888888888888888888888888887777776644
No 89
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100 protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Probab=24.46 E-value=1.3e+02 Score=22.18 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=33.5
Q ss_pred hcCCHHHHHHHHHHH----H----HHHHHHHhHHHHHH---hcCCCCHHHHHHHhhHHHHHHHH
Q psy1409 184 NNVSTDTVLALLQTA----A----SEIEEESEKVPEEF---LNGTIDVDKFLETFTPKRILMHL 236 (320)
Q Consensus 184 ~~~sp~~l~~~Lq~a----~----~eaEeeSE~lae~F---L~G~idv~~Fl~~f~~~R~~~h~ 236 (320)
+..+.+-+...|+.. . .-.+++.+.+-..+ -+|.|+.++|+.-.......||.
T Consensus 24 g~Is~~El~~~l~~~~~~~lg~~~~~~~~ev~~l~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~ 87 (100)
T 1psr_A 24 DKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFLSLLGDIATDYHK 87 (100)
T ss_dssp SCBCHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHCTTCSSCBCHHHHHHHHHHHHHHHHH
T ss_pred CeECHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 456777787777652 1 12344555565554 26889999999877655455553
No 90
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=24.17 E-value=3e+02 Score=22.61 Aligned_cols=118 Identities=15% Similarity=0.127 Sum_probs=55.5
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q psy1409 51 SNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHK-NNVSTDTVLALLQTAASEIEEESETTESNEQ 129 (320)
Q Consensus 51 ~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~-~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~ 129 (320)
..-.|-+.|..-+-.|-.+|+++...-.-+.....-......++..-| ..--...|.+=|...++..+...+.
T Consensus 47 KVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~T------ 120 (167)
T 4gkw_A 47 KVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTET------ 120 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHH------
T ss_pred hHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHHH------
Confidence 345677888888888888888865543333322222222111111110 0001122233333333444443333
Q ss_pred HHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCH
Q psy1409 130 KEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKS-HKNNVST 188 (320)
Q Consensus 130 ~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~-~~~~~sp 188 (320)
.=...-+|++-|-.+.+....+..|+-..+...+++.- -..+|||
T Consensus 121 --------------iG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR~QRfsp 166 (167)
T 4gkw_A 121 --------------IGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYRAQRFSP 166 (167)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC--
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhccCC
Confidence 11222334444444555566666677777776666665 3356766
No 91
>1evs_A Oncostatin M; 4-helix bundle, GP130 binding cytokine; 2.20A {Homo sapiens} SCOP: a.26.1.1
Probab=23.65 E-value=2.8e+02 Score=23.47 Aligned_cols=28 Identities=7% Similarity=0.075 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q psy1409 187 STDTVLALLQTAASEIEEESEKVPEEFL 214 (320)
Q Consensus 187 sp~~l~~~Lq~a~~eaEeeSE~lae~FL 214 (320)
|-...+..|.+-....-..-.++.++|-
T Consensus 66 sr~~fL~Tl~ttLg~vlhrL~al~Q~~p 93 (187)
T 1evs_A 66 GRRGFLQTLNATLGCVLHRLADLEQRLP 93 (187)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 4444444555555444455555555554
No 92
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.50 E-value=96 Score=28.12 Aligned_cols=40 Identities=38% Similarity=0.363 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 45 KEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLS 84 (320)
Q Consensus 45 re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~ 84 (320)
...+..++..|+.+|--+...|.++|.++....+|+..|+
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456677777777776666677777777777666666654
No 93
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=23.23 E-value=1e+02 Score=23.28 Aligned_cols=53 Identities=13% Similarity=0.133 Sum_probs=35.6
Q ss_pred hcCCHHHHHHHHHHHH------HHHHHHHhHHHHHH---hcCCCCHHHHHHHhhHHHHHHHH
Q psy1409 184 NNVSTDTVLALLQTAA------SEIEEESEKVPEEF---LNGTIDVDKFLETFTPKRILMHL 236 (320)
Q Consensus 184 ~~~sp~~l~~~Lq~a~------~eaEeeSE~lae~F---L~G~idv~~Fl~~f~~~R~~~h~ 236 (320)
+..|.+-|...|.... .-.+++.+.|-..+ -+|.|+.++|+.-....-..||.
T Consensus 27 G~Is~~EL~~~l~~~l~~~lg~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~~~~~~~~~~~ 88 (101)
T 3nso_A 27 YKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLACLCLYCHE 88 (101)
T ss_dssp TEECHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHCCCSCEEHHHHHHHHHHHHHHHCG
T ss_pred CEECHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4556777777666532 22355566665554 37899999999877777788875
No 94
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=23.13 E-value=2.6e+02 Score=25.20 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHhccCCHHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH-----------HHHHHHH
Q psy1409 4 LESLLEHLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEA-----------LLEKKSQ 72 (320)
Q Consensus 4 ~~~~L~~lS~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~-----------L~elr~~ 72 (320)
+.++=...|.+-|+.|+.-...+..|... ++.+....++++...+.+|.-.|...++ ||.--.+
T Consensus 154 L~~L~~~i~~~~L~~Ll~~~k~L~~~~~k-----v~~vr~~leelLddDeDm~~myLT~k~~~~~d~eElEmLLE~Y~~q 228 (261)
T 3rkg_A 154 LNDLENEVNRLKLRHLLIKSKDLTLFYQK-----TLLIRDLLDELLENDDDLANMYLTVKKSPKDNFSDLEMLIETYYTQ 228 (261)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHTCHHHHHHTCCSSCCCTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHcCHHHHHHhhccCCCCCccchHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1409 73 LLDLNEQLTQLSKSVESKVE 92 (320)
Q Consensus 73 l~~~~~el~~l~~~~~~~~~ 92 (320)
+...+.++..|.+..+.-..
T Consensus 229 ~d~~~~~~~~L~~~I~~TEe 248 (261)
T 3rkg_A 229 CDEYVQQSESLIQDIKSTEE 248 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 95
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=22.90 E-value=1.6e+02 Score=29.03 Aligned_cols=29 Identities=7% Similarity=0.189 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1409 71 SQLLDLNEQLTQLSKSVESKVELIKSHKN 99 (320)
Q Consensus 71 ~~l~~~~~el~~l~~~~~~~~~~~~~~~~ 99 (320)
.++....++.+++..+.+.+..+...++.
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk 61 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQK 61 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777776654
No 96
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.64 E-value=2.2e+02 Score=20.55 Aligned_cols=39 Identities=10% Similarity=0.014 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHH
Q psy1409 45 KEMLIASNKSLAEYN-LSQEEALLEKKSQLLDLNEQLTQL 83 (320)
Q Consensus 45 re~ll~~N~~LAe~N-L~~ep~L~elr~~l~~~~~el~~l 83 (320)
+.+++.=--..|-.. |+.-.+|...|..++...+.+++-
T Consensus 22 k~ELf~LR~q~atgq~l~n~~~ir~vRr~IARi~Tvl~er 61 (72)
T 3j21_W 22 RLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKEK 61 (72)
T ss_dssp HHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 444454455557677 889999999999999887777654
No 97
>3ohw_B Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.70A {Synechocystis SP}
Probab=22.42 E-value=1.3e+02 Score=25.16 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=19.1
Q ss_pred HhHHHHHHhcCCCCHHHHHHHhh
Q psy1409 206 SEKVPEEFLNGTIDVDKFLETFT 228 (320)
Q Consensus 206 SE~lae~FL~G~idv~~Fl~~f~ 228 (320)
.-.++.+|.+|+|+|-+|++.--
T Consensus 50 ~~~lESqlrnG~IsVReFVR~La 72 (148)
T 3ohw_B 50 FTALESKLSNNEINVKEFIEGLG 72 (148)
T ss_dssp THHHHHHHHTTSSCHHHHHHHHH
T ss_pred cccHHHHHHcCCcCHHHHHHHHH
Confidence 35778899999999999998643
No 98
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=22.31 E-value=3.3e+02 Score=22.41 Aligned_cols=67 Identities=13% Similarity=0.104 Sum_probs=25.7
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 24 ETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVE 92 (320)
Q Consensus 24 d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~ 92 (320)
+.++.||.... .++.........+.....+=+.-|.--.....+|.+|.....+...+...+..+.+
T Consensus 36 ~~m~~F~~~v~--~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk 102 (180)
T 1s94_A 36 GFMEEFFEQVE--EIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLK 102 (180)
T ss_dssp CHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455655532 23333333333333333333333332223334455555555555555444443333
No 99
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=21.56 E-value=5.1e+02 Score=24.34 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=16.3
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Q psy1409 51 SNKSLAEYNLSQEEALLEKKSQLLDLNEQLT 81 (320)
Q Consensus 51 ~N~~LAe~NL~~ep~L~elr~~l~~~~~el~ 81 (320)
....+...+.+-+.-|.....++.....+..
T Consensus 360 ~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~ 390 (471)
T 3mq9_A 360 AVINAASGRQTVDEALKDAQTRITAARDGLR 390 (471)
T ss_dssp HHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhhH
Confidence 3333444455556666666666655544443
No 100
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.44 E-value=2e+02 Score=24.97 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 24 ETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVES 89 (320)
Q Consensus 24 d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~ 89 (320)
|.|..+=..+.+ ++-.-......|..+|..|.+++-.+..+++.++.+|...-...+....+..+
T Consensus 2 d~~~~YK~~~q~-ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~ 66 (190)
T 4emc_A 2 DPLTVYKNSVKQ-QIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQ 66 (190)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
No 101
>1eq1_A Apolp-III, apolipophorin-III; five helix-bundle, "helix-short helix-helix" recognition motif, lipid binding protein; NMR {Manduca sexta} SCOP: a.63.1.1
Probab=21.33 E-value=3.5e+02 Score=22.35 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcCCCC-------------HHHHHHHhhHHHHHHHH
Q psy1409 191 VLALLQTAASEIEEESEKVPEEFLNGTID-------------VDKFLETFTPKRILMHL 236 (320)
Q Consensus 191 l~~~Lq~a~~eaEeeSE~lae~FL~G~id-------------v~~Fl~~f~~~R~~~h~ 236 (320)
+..+||+|+..+-.+|..|+...- .+++ .++|+++-.+..+..|-
T Consensus 104 lrdkLqaAVQ~t~qesqkLaKeVa-sn~eetN~KLaPkiK~Ay~dF~K~aeevqKK~he 161 (166)
T 1eq1_A 104 FKDKLQAAVQTTVQESQKLAKEVA-SNMEETNKKLAPKIKQAYDDFVKHAEEVQKKLHE 161 (166)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH-SCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH-hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 668899999999999999988753 2222 67888888887776664
No 102
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens}
Probab=21.25 E-value=2.7e+02 Score=20.94 Aligned_cols=52 Identities=10% Similarity=0.183 Sum_probs=37.1
Q ss_pred cCCHHHHHHHHHHHHH------HHHHHHhHHHHHH---hcCCCCHHHHHHHhhHHHHHHHH
Q psy1409 185 NVSTDTVLALLQTAAS------EIEEESEKVPEEF---LNGTIDVDKFLETFTPKRILMHL 236 (320)
Q Consensus 185 ~~sp~~l~~~Lq~a~~------eaEeeSE~lae~F---L~G~idv~~Fl~~f~~~R~~~h~ 236 (320)
..+.+-|...|+.... ..+++.+.|-..+ -+|.|+.++|+.-....-..||.
T Consensus 31 ~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~m~~~~~~~~~ 91 (104)
T 3zwh_A 31 KLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSSIAMMSNE 91 (104)
T ss_dssp SBCHHHHHHHHHHHCGGGSCSSCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHHHH
T ss_pred eECHHHHHHHHHHHcchhccCCCCHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 5677777777765321 1356666766665 47899999999988777788886
No 103
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=20.90 E-value=3.9e+02 Score=22.70 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhHHHHHHhcCCCCHHHHHHHhhHHH-HHHHHhHH
Q psy1409 197 TAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKR-ILMHLRRI 239 (320)
Q Consensus 197 ~a~~eaEeeSE~lae~FL~G~idv~~Fl~~f~~~R-~~~h~Rk~ 239 (320)
+.-..+|.--..|...|-.|.|+++.||+..+..- ..+..|.+
T Consensus 122 Aed~AieDaIy~L~~al~~g~I~ld~ylK~vR~LaReQF~~ral 165 (174)
T 2p22_A 122 AQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQFLVRWH 165 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666667778889999999999999977654 44444433
No 104
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio}
Probab=20.82 E-value=2.3e+02 Score=20.85 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=35.7
Q ss_pred cCCHHHHHHHHHHHHH------HHHHHHhHHHHHH---hcCCCCHHHHHHHhhHHHHHHHHhH
Q psy1409 185 NVSTDTVLALLQTAAS------EIEEESEKVPEEF---LNGTIDVDKFLETFTPKRILMHLRR 238 (320)
Q Consensus 185 ~~sp~~l~~~Lq~a~~------eaEeeSE~lae~F---L~G~idv~~Fl~~f~~~R~~~h~Rk 238 (320)
..+.+-+...|+.... -.+++.+.+-..+ -+|.|+.++|+.-.......||.--
T Consensus 28 ~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~ 90 (99)
T 2y5i_A 28 KLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLVAALTVACNDFF 90 (99)
T ss_dssp EECHHHHHHHHHHHSGGGGTTSCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 4577777777764211 1345566666555 2688999999988877667777633
No 105
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=20.79 E-value=2.3e+02 Score=20.04 Aligned_cols=56 Identities=21% Similarity=0.233 Sum_probs=37.4
Q ss_pred HhccCCHHHHHhhhcCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q psy1409 7 LLEHLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQL 83 (320)
Q Consensus 7 ~L~~lS~eEL~~Ll~d~d~l~~f~~~l~~~~vk~~~~~re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l 83 (320)
+|+++|.+||.+.+.+ .+.+++.=--..|-..|+.-.+|...|..++...+-+++-
T Consensus 5 elr~~s~~EL~~~l~e---------------------lk~ELf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl~er 60 (66)
T 1r73_A 5 ELRNYTDEELKNLLEE---------------------KKRQLMELRFQLAMGQLKNTSLIKLTKRDIARIKTILRER 60 (66)
T ss_dssp HHHHSCHHHHHHHHHH---------------------HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHH---------------------HHHHHHHHHHHHHccCccCcHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777654322 2333444444556678889999999999998877766654
No 106
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=20.54 E-value=2.7e+02 Score=20.67 Aligned_cols=72 Identities=24% Similarity=0.217 Sum_probs=38.1
Q ss_pred hhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q psy1409 123 TTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEI 202 (320)
Q Consensus 123 ~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~~~~~~sp~~l~~~Lq~a~~ea 202 (320)
+..+-.+.+.|+.+|..| ++-+..|+-.|+.|+.+.+++.- ++..+...+.. ......+++..+.+.
T Consensus 4 ~~gmgkevEnLi~EN~eL----l~TKNaLnvvk~DLI~rvdELt~---E~e~l~~El~s------~~~~~~r~~~ri~el 70 (77)
T 2w83_C 4 PEFMGREVENLILENTQL----LETKNALNIVKNDLIAKVDELTC---EKDVLQGELEA------VKQAKLKLEEKNREL 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH------HHHHHHHHHHHC---
T ss_pred hhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 445677889999999885 45566677777666665554433 33333333322 234566677777777
Q ss_pred HHHHh
Q psy1409 203 EEESE 207 (320)
Q Consensus 203 EeeSE 207 (320)
|+++.
T Consensus 71 EeElk 75 (77)
T 2w83_C 71 EEELR 75 (77)
T ss_dssp -----
T ss_pred HHHHh
Confidence 76653
No 107
>3nph_B Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 2; PFAM00427 domain, linker protein, phycobiliprotein, photosyn; 1.85A {Synechocystis SP} PDB: 2l3w_A
Probab=20.26 E-value=59 Score=27.20 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=28.0
Q ss_pred cCCHHHHHHHHHHHHHHHHH-----H---HhHHHHHHhcCCCCHHHHHHHhh
Q psy1409 185 NVSTDTVLALLQTAASEIEE-----E---SEKVPEEFLNGTIDVDKFLETFT 228 (320)
Q Consensus 185 ~~sp~~l~~~Lq~a~~eaEe-----e---SE~lae~FL~G~idv~~Fl~~f~ 228 (320)
..|.+.+-..++++-.+.=+ + .-.++.+|.+|+|+|-+|++.--
T Consensus 9 ~~s~~~~~~vI~AaYrQVfgn~~~~~seR~~~lESqLrnG~ItVReFVR~La 60 (148)
T 3nph_B 9 RSTEEEVDAVILAVYRQVLGNDHLMSQERLTSAESLLRGREISVRDFVRAVA 60 (148)
T ss_dssp SSCSHHHHHHHHHHHHHHHSCSCCCTTTSCHHHHHHHHTTSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCcccccccccccHHHHHhcCCccHHHHHHHHH
Confidence 34445555555555444332 2 33567899999999999998644
No 108
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=20.23 E-value=2.5e+02 Score=23.44 Aligned_cols=147 Identities=11% Similarity=0.143 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHhh
Q psy1409 66 LLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYNL 145 (320)
Q Consensus 66 L~elr~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~Sp~~Ll~lLq~a~~~~eeesE~k~l~~~~e~ll~~N~~LAe~NL 145 (320)
|..+.....-.-.++..+...|.. ..-.+..+.+++...|..-.........+ +.+ -.....|-
T Consensus 52 l~~l~~~~~~s~~ei~~l~~~F~~-----~d~~G~Is~~ef~~~l~~~~~~~~~~~~~-------~~l----f~~~D~d~ 115 (229)
T 3dd4_A 52 LELLEAQSKFTKKELQILYRGFKN-----ECPSGVVNEETFKEIYSQFFPQGDSTTYA-------HFL----FNAFDTDH 115 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-----TCCSCCCCHHHHHHHHHHHSCSSSHHHHH-------HHH----HHTTCSSC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHh-----hCCCCCcCHHHHHHHHHHHCCCCCcHHHH-------HHH----HHHcCCCC
Confidence 444444333334566666666544 23457789999988877531000000001 111 11122334
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCHHHHHHHHHHHH-------------HHHHHHHhHHHH
Q psy1409 146 SQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKS-HKNNVSTDTVLALLQTAA-------------SEIEEESEKVPE 211 (320)
Q Consensus 146 ~~ep~Leelr~ql~~~y~el~~L~~~~~~k~~kl~~-~~~~~sp~~l~~~Lq~a~-------------~eaEeeSE~lae 211 (320)
.+....+++..-+..... ......+....+.++. -.+..+.+-+...|.... ...+++.+.+-.
T Consensus 116 ~G~I~~~Ef~~~l~~~~~--~~~~~~l~~~F~~~D~d~dG~Is~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 193 (229)
T 3dd4_A 116 NGAVSFEDFIKGLSILLR--GTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQ 193 (229)
T ss_dssp CSSCCHHHHHHHHHHHHH--SCHHHHHHHHHHHHCTTCSSCCBHHHHHHHHHHHHHHCC-----------CCTHHHHHHH
T ss_pred CCeEeHHHHHHHHHHHcC--CChHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHHHHhccccCCCcchhhHHHHHHHHHH
Confidence 455566666644432211 0111222223333333 345567777777776542 123344555555
Q ss_pred HH---hcCCCCHHHHHHHhhHH
Q psy1409 212 EF---LNGTIDVDKFLETFTPK 230 (320)
Q Consensus 212 ~F---L~G~idv~~Fl~~f~~~ 230 (320)
.| -+|.|+.++|+.-+...
T Consensus 194 ~~D~d~dG~Is~~EF~~~~~~~ 215 (229)
T 3dd4_A 194 KMDKNKDGVVTIDEFIESCQKD 215 (229)
T ss_dssp HHCSSCSSBCCHHHHHHHHHTC
T ss_pred HhcCCCCCcEeHHHHHHHHHhC
Confidence 55 26789999999877643
No 109
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=20.17 E-value=3.4e+02 Score=21.79 Aligned_cols=39 Identities=8% Similarity=-0.044 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q psy1409 45 KEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQL 83 (320)
Q Consensus 45 re~ll~~N~~LAe~NL~~ep~L~elr~~l~~~~~el~~l 83 (320)
+.+++.=--..|-..|+.-.+|...|-.|+...+.+++-
T Consensus 27 K~ELf~LRfq~atgqlen~~rIr~vRRdIARi~Tvl~er 65 (124)
T 3iz5_c 27 KTELGQLRIQKVASSGSKLNRIHDIRKSIARVLTVINAK 65 (124)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 444444445556667777788999999888877766654
No 110
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=20.10 E-value=5.2e+02 Score=25.43 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=27.6
Q ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409 57 EYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIK 95 (320)
Q Consensus 57 e~NL~~ep~L~elr~~l~~~~~el~~l~~~~~~~~~~~~ 95 (320)
+-+-+++-+++-+|..|...++-++.|+..++....+.+
T Consensus 111 e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQ 149 (491)
T 1m1j_A 111 HVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMK 149 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567778888888888877888888777666555554
Done!