RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1409
(320 letters)
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37,
MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C
2f66_C
Length = 192
Score = 54.8 bits (131), Expect = 3e-09
Identities = 28/151 (18%), Positives = 58/151 (38%), Gaps = 3/151 (1%)
Query: 99 NNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQL 158
N +S+ ++ L+QT ++E I + + + E L E+K ++
Sbjct: 36 NLLSSKEIIDLIQTHRHQLELYVTKFNPLTDFAGKIHAFRDQFKQLEENFEDLHEQKDKV 95
Query: 159 LDLNEQLTQLSKSVESKVELIKSHKN-NVSTDTVLALLQTAASEIEEESEKVPEEFLN-- 215
L E L + + S + + L+ +++EES ++ +
Sbjct: 96 QALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLETTTRSID 155
Query: 216 GTIDVDKFLETFTPKRILMHLRRIKADKMAE 246
D+D+F++ + R HLRR K +
Sbjct: 156 SADDLDQFIKNYLDIRTQYHLRREKLATWDK 186
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 1e-08
Identities = 42/253 (16%), Positives = 84/253 (33%), Gaps = 64/253 (25%)
Query: 37 LTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVE---- 92
+ E+ E + K + E+A ++ D + + + KS+ SK E
Sbjct: 7 MDFETGEHQY----QYKDILSVF---EDAFVDN----FDCKD-VQDMPKSILSKEEIDHI 54
Query: 93 ---------------LIKSHKNNVSTDTVLALLQT----AASEIEEES-----ETTESNE 128
+ S + + V +L+ S I+ E T E
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 129 QKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQL------------TQLSKSVESKV 176
Q++ L N+ A+YN+S+ + L+ + LL+L T ++ V
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 177 ELIKSHKNNV---------STDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETF 227
++ + S +TVL +LQ +I+ + N + +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH---SIQ 231
Query: 228 TPKRILMHLRRIK 240
R L+ + +
Sbjct: 232 AELRRLLKSKPYE 244
Score = 55.2 bits (132), Expect = 1e-08
Identities = 49/305 (16%), Positives = 98/305 (32%), Gaps = 78/305 (25%)
Query: 7 LLEHLDISELKELVNDEETFN-NFTKEATAT-------LTTESNEQKEMLIASNKSLAEY 58
L +++ V + N F T +T EQ++ L N+ A+Y
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 59 NLSQEEALLEKKSQLLDLNEQL------------TQLSKSVESKVELIKSHKNNV----- 101
N+S+ + L+ + LL+L T ++ V ++ +
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 102 ----STDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQ 157
S +TVL +LQ +I+ + + L + L + LL+ K
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL---RIHSIQAELRR---LLKSKPY 243
Query: 158 ---LLDL-----------------------NEQLTQLSKSVESKVELIKSHKNNVSTDTV 191
LL L +Q+T + + + H ++ D V
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 192 LALLQTAASEIEEESEKVPEE------FLNGTI--DVDKFLETFTPKRILMHLRRIKADK 243
+LL ++ + +P E I + L T+ + + + DK
Sbjct: 304 KSLL---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD------NWKHVNCDK 354
Query: 244 MAEML 248
+ ++
Sbjct: 355 LTTII 359
Score = 52.5 bits (125), Expect = 8e-08
Identities = 42/235 (17%), Positives = 84/235 (35%), Gaps = 38/235 (16%)
Query: 4 LESLLEHLDISELKELVNDEETFNNFTKEATATLT---TESNEQKEMLIAS---NKSLAE 57
+ES L L+ +E +++ + F T L+ + + M++ + SL E
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 58 YNLSQEEALLEKKSQLLDL---NEQLTQLSKSVESKVELIKS-HKNNVSTDTV------- 106
+E+ + S L+L E L +S+ + K+ +++ +
Sbjct: 419 KQ--PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 107 LA--LLQTAASEIEEESETTESN----EQK--EMLIASNKSLAEYNLSQEEALLEK-KSQ 157
+ L E + EQK A N S + N Q+ L+ K
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ---LKFYKPY 533
Query: 158 LLDLNEQLTQLSKSVESKVELIKSHKNNV----STDTVLALLQTAASEIEEESEK 208
+ D + + +L ++ + + + N+ TD + L I EE+ K
Sbjct: 534 ICDNDPKYERLVNAIL---DFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 49.4 bits (118), Expect = 9e-07
Identities = 34/197 (17%), Positives = 77/197 (39%), Gaps = 18/197 (9%)
Query: 12 DISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKS 71
+ +L+E + +EE + T + + ++ ++ + L++E LLE++
Sbjct: 956 QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK--LTKERKLLEERV 1013
Query: 72 QLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESETTESNEQKE 131
DL L + + ++ +L H++ +S + +EE E + K
Sbjct: 1014 S--DLTTNLAEEEEKAKNLTKLKNKHESMIS--------ELEVRLKKEEKSRQELEKIKR 1063
Query: 132 MLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTV 191
L + L E + + E K+QL E+L +E + + +
Sbjct: 1064 KLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRE--- 1120
Query: 192 LALLQTAASEIEEESEK 208
L++ S+++E+ E
Sbjct: 1121 ---LESHISDLQEDLES 1134
Score = 34.4 bits (79), Expect = 0.055
Identities = 32/211 (15%), Positives = 74/211 (35%), Gaps = 19/211 (9%)
Query: 13 ISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEK--- 69
+ KE E ++ L E N +E L A + AE + +K
Sbjct: 866 LQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQEL 925
Query: 70 KSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESETTESNEQ 129
+ L ++ ++ + + + K + + L+ E E + + +
Sbjct: 926 EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD------LEEQLEEEEAARQKLQ--LE 977
Query: 130 KEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKS-----HKN 184
K K + + L E+ + + L E+++ L+ ++ + E K+ +K+
Sbjct: 978 KVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKH 1037
Query: 185 NVSTDTV---LALLQTAASEIEEESEKVPEE 212
+ L + + E+E+ K+ E
Sbjct: 1038 ESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 44.7 bits (106), Expect = 3e-05
Identities = 35/175 (20%), Positives = 68/175 (38%), Gaps = 18/175 (10%)
Query: 1 MENLESLLEHLD--ISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEY 58
+E + L L+ I +L+ ++++ E L + + E L +S E
Sbjct: 916 VERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL----RSDVER 971
Query: 59 NLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKS-----HKNNVSTDTVLALLQTA 113
EE +++L L E++ +L K + K+ K T+ +++ L+
Sbjct: 972 LRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQ 1031
Query: 114 ASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQL 168
+ ++ E E E N + E L +E LE LDLN++ +
Sbjct: 1032 NTLLKTEKE--ELNRRIHDQAKEITETMEKKLVEETKQLE-----LDLNDERLRY 1079
Score = 30.5 bits (69), Expect = 0.83
Identities = 10/93 (10%), Positives = 32/93 (34%), Gaps = 1/93 (1%)
Query: 118 EEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVE 177
E+ E E+ L + + E S E L + + + ++ L + + +
Sbjct: 939 EQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRK 998
Query: 178 LI-KSHKNNVSTDTVLALLQTAASEIEEESEKV 209
+ ++ + + + ++ E ++
Sbjct: 999 ELHQTQTEKKTIEEWADKYKHETEQLVSELKEQ 1031
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 3e-05
Identities = 42/281 (14%), Positives = 83/281 (29%), Gaps = 85/281 (30%)
Query: 5 ESLLEHLDISELKELVND---EETFN-----------NFTKEATATLTTESNEQKEMLIA 50
+ S + ++V + T + N++ T+ + +++
Sbjct: 1651 NHFKDTYGFS-ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE 1709
Query: 51 SNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQ-----LSKSVESKVELIKSHKNNVSTDT 105
N+ Y E+ LL Q TQ + K+ E +KS K + D
Sbjct: 1710 INEHSTSYTFRSEKGLLSAT--------QFTQPALTLMEKAA---FEDLKS-KGLIPADA 1757
Query: 106 VL---------AL--------LQTAAS-------EIEEESETTESNEQKEMLIASNKSLA 141
AL +++ ++ E +IA N
Sbjct: 1758 TFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV 1817
Query: 142 EYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKN-NVSTDTV-----LALL 195
+ SQE L + ++ K VE++ N NV L L
Sbjct: 1818 AASFSQE-----------ALQYVVERVGKRTGWLVEIV----NYNVENQQYVAAGDLRAL 1862
Query: 196 QTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHL 236
T + + + ID+ + ++ + + + HL
Sbjct: 1863 DTVTNVLNFIKLQ--------KIDIIELQKSLSLEEVEGHL 1895
Score = 36.2 bits (83), Expect = 0.017
Identities = 61/384 (15%), Positives = 107/384 (27%), Gaps = 144/384 (37%)
Query: 3 NLESLLEHLDISELKELVNDEETF-NNFTKEATATLTTESNEQKEMLIASNKSLAE-YNL 60
N + E EL++L + K + TL+ + + K + N+
Sbjct: 165 NTDDYFE-----ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD----AEKVFTQGLNI 215
Query: 61 SQEEALLEKKSQLLD------------LNEQLTQLSK-SVESKV------ELIKS----- 96
LE S D L + QL+ V +K+ EL
Sbjct: 216 ---LEWLENPSNTPDKDYLLSIPISCPLI-GVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 97 -HKNNV-------STDT----------VLALL-------QTAASEIE-EESETTESNEQK 130
H + TD+ + +L A S +S E
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 131 E-----MLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNN 185
E ML S++ Q + + K + L +Q+ ++S L+ KN
Sbjct: 332 EGVPSPML-----SISNLTQEQVQDYVNKTNSHLPAGKQV-EIS--------LVNGAKNL 377
Query: 186 VST----------------------------------------DTVLA-----LLQTAAS 200
V + V + LL A+
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASD 437
Query: 201 EIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRIKAD---KMAEMLT------KR 251
I ++ K F I + + +TF LR + ++ + + +
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVY-DTFDGS----DLRVLSGSISERIVDCIIRLPVKWET 492
Query: 252 NSFGSPTHNGVGGHNGGSSSFGGM 275
+ TH G GG+S G +
Sbjct: 493 TTQFKATHILDFG-PGGASGLGVL 515
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 39.3 bits (91), Expect = 9e-04
Identities = 16/82 (19%), Positives = 24/82 (29%), Gaps = 3/82 (3%)
Query: 237 RRIKADKMAEMLTKRNSFGSPTHNGVGGHNG-GSSSFGGMYPPVPVPPMGPGYPVSGGGM 295
+ + + + S G +G G + G P G G G +
Sbjct: 140 QNPVVTPVNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAV 199
Query: 296 PLPHIQMTPYPQLPQMPTPSYP 317
P P P P P P +P
Sbjct: 200 PGG--DRFPGPAGPGGPPPPFP 219
Score = 33.5 bits (76), Expect = 0.062
Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 9/111 (8%)
Query: 203 EEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLR-RIKADKMAEMLTKRNSFGSPTHNG 261
E S+K+ + + + T K+ L + + + ++ G P +
Sbjct: 122 EASSKKLMDLLPKRELHGQNPVVTPVNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSS 181
Query: 262 VGGHNGGSSSFGGMYPPVPVPPMGPGYPVSGGGMPLPHIQMTPYPQLPQMP 312
G G VP PG G G P P P+P Q
Sbjct: 182 RAAFPQGGRGRGRFPGAVPGGDRFPGPA--GPGGPPP-----PFPA-GQTH 224
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 37.7 bits (87), Expect = 0.002
Identities = 15/63 (23%), Positives = 18/63 (28%), Gaps = 3/63 (4%)
Query: 255 GSPTHNGVGGHNGGSSSFGGMYPPVPVPPMGPGYPVSGGGMPLPHIQMTPYPQLPQMPTP 314
+ G+ + P PPMG G P G P P P P M P
Sbjct: 150 VAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPP---GMRPPMGPPMGIP 206
Query: 315 SYP 317
Sbjct: 207 PGR 209
Score = 35.4 bits (81), Expect = 0.016
Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Query: 252 NSFGSPTHNGVGGHNGGSSSFGGMYPPVPVPPM-GPGYPVSGGGMPLPHIQMTPYPQLPQ 310
+P G +++ P PP G P G G P P + P P
Sbjct: 139 QQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPP 198
Query: 311 MPTP 314
M P
Sbjct: 199 MGPP 202
Score = 34.6 bits (79), Expect = 0.025
Identities = 12/60 (20%), Positives = 14/60 (23%), Gaps = 1/60 (1%)
Query: 255 GSPTHNGVGGHNGGSSSFGGMYPPVPVPPMGPGYPVSGGGMPLPHIQMTPYPQLPQMPTP 314
S G M P PP G P P + + P P P
Sbjct: 159 ASIAGAPTQYPPGRGGPPPPMGRGAP-PPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPP 217
Score = 33.9 bits (77), Expect = 0.051
Identities = 10/79 (12%), Positives = 15/79 (18%)
Query: 239 IKADKMAEMLTKRNSFGSPTHNGVGGHNGGSSSFGGMYPPVPVPPMGPGYPVSGGGMPLP 298
K +A + + G G + P G G P P
Sbjct: 87 PKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 299 HIQMTPYPQLPQMPTPSYP 317
+ P
Sbjct: 147 RGTVAAAAAAATASIAGAP 165
Score = 33.9 bits (77), Expect = 0.051
Identities = 14/63 (22%), Positives = 17/63 (26%)
Query: 255 GSPTHNGVGGHNGGSSSFGGMYPPVPVPPMGPGYPVSGGGMPLPHIQMTPYPQLPQMPTP 314
+ T + G GG PP+ PG GM P P P
Sbjct: 155 AAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMG 214
Query: 315 SYP 317
P
Sbjct: 215 MPP 217
Score = 32.7 bits (74), Expect = 0.12
Identities = 13/50 (26%), Positives = 17/50 (34%)
Query: 255 GSPTHNGVGGHNGGSSSFGGMYPPVPVPPMGPGYPVSGGGMPLPHIQMTP 304
P G GM PP+ P P + GMP P ++ P
Sbjct: 175 PPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPP 224
Score = 32.7 bits (74), Expect = 0.12
Identities = 7/63 (11%), Positives = 9/63 (14%)
Query: 255 GSPTHNGVGGHNGGSSSFGGMYPPVPVPPMGPGYPVSGGGMPLPHIQMTPYPQLPQMPTP 314
G G + G P P + P
Sbjct: 129 GPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGM 188
Query: 315 SYP 317
P
Sbjct: 189 MGP 191
Score = 32.3 bits (73), Expect = 0.14
Identities = 10/67 (14%), Positives = 15/67 (22%), Gaps = 4/67 (5%)
Query: 255 GSPTHNGVGGHNGGSSSFGGMYPPVPVP----PMGPGYPVSGGGMPLPHIQMTPYPQLPQ 310
G P+ + G+ + + PG M P
Sbjct: 135 GGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPG 194
Query: 311 MPTPSYP 317
M P P
Sbjct: 195 MRPPMGP 201
Score = 31.9 bits (72), Expect = 0.21
Identities = 14/62 (22%), Positives = 17/62 (27%), Gaps = 2/62 (3%)
Query: 255 GSPTHNGVGGHNGGSSSFGGMYPPVPV--PPMGPGYPVSGGGMPLPHIQMTPYPQLPQMP 312
G+PT G G PP + PP G+P P P
Sbjct: 163 GAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRP 222
Query: 313 TP 314
P
Sbjct: 223 PP 224
Score = 30.4 bits (68), Expect = 0.66
Identities = 12/78 (15%), Positives = 18/78 (23%)
Query: 240 KADKMAEMLTKRNSFGSPTHNGVGGHNGGSSSFGGMYPPVPVPPMGPGYPVSGGGMPLPH 299
+ + G+ G+G G G P P GP V G +
Sbjct: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMT 143
Query: 300 IQMTPYPQLPQMPTPSYP 317
Q +
Sbjct: 144 PQGRGTVAAAAAAATASI 161
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 38.3 bits (89), Expect = 0.004
Identities = 39/228 (17%), Positives = 75/228 (32%), Gaps = 44/228 (19%)
Query: 66 LLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESETTE 125
L K + L + Q+ VE+++E +K + ++ L EI E+E+
Sbjct: 1243 NLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQL 1302
Query: 126 SNEQKEM----------LIASNKSLAEYNLSQEEALLEKKS----QLLDLNEQLTQLSKS 171
Q++ + +LA Y L+ ++ + + D NE +
Sbjct: 1303 RAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNE--SATINE 1360
Query: 172 VESKVELIKSHKNNV---STDTVLALLQTAASEIEE-------ESEKVPEEFLNGTIDVD 221
+ L +S N V + + AA S +P G + D
Sbjct: 1361 MMK--HLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIP-----GNRNAD 1413
Query: 222 KFLETFTPKRILMHLRR-IKADKM-AEMLTKRNSFGSPTHNGVGGHNG 267
+ +++ + +K D + A + SFG G G
Sbjct: 1414 NVDKILEQFEYVLYPSKTLKTDGVRAVSI---TSFG------FGQKGG 1452
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB:
1dx1_A 1qlx_A 1qlz_A
Length = 219
Score = 37.1 bits (85), Expect = 0.004
Identities = 15/63 (23%), Positives = 16/63 (25%), Gaps = 1/63 (1%)
Query: 255 GSPTHNGVGGHNGGSSSFGGMYPPVPVPPMGPGYPVSGGGMPLPHIQMTPYPQLPQMPTP 314
G + G G G G G G P GGG PH P P
Sbjct: 15 GGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQP-HGGGWGQPHGGGWGQPHGGGWGQP 73
Query: 315 SYP 317
Sbjct: 74 HGG 76
Score = 36.0 bits (82), Expect = 0.008
Identities = 14/54 (25%), Positives = 17/54 (31%)
Query: 266 NGGSSSFGGMYPPVPVPPMGPGYPVSGGGMPLPHIQMTPYPQLPQMPTPSYPFY 319
GG ++ G YP P P GGG PH P P +
Sbjct: 9 GGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGW 62
Score = 32.9 bits (74), Expect = 0.085
Identities = 20/70 (28%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 253 SFGSPTHNGVGGHNGGSSSFGGMYPPVP-VPPMGPGY--PVSGGGMPLPHIQMTPYPQLP 309
S P G G + GGS G P PP G G GGG PH P
Sbjct: 2 SKKRPKPGG-GWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGG 60
Query: 310 QMPTPSYPFY 319
P +
Sbjct: 61 GWGQPHGGGW 70
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo
sapiens}
Length = 302
Score = 37.3 bits (87), Expect = 0.005
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 243 KMAEMLTKRNSFGSPTHNG----VGGHNGGSS 270
+A M +R++ G+ NG VGG +G +
Sbjct: 91 SVANMRDRRSTLGAAVLNGLLYAVGGFDGSTG 122
Score = 31.5 bits (72), Expect = 0.34
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 12/54 (22%)
Query: 243 KMAEMLTKRNSFGSPTHNG----VGGHNGGSSSFGG---MYPPV-----PVPPM 284
+A M T+R+S G G VGG++ S Y + M
Sbjct: 138 HVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEM 191
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural
genomics, structur genomics consortium, SGC, kelch
repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Length = 306
Score = 36.9 bits (86), Expect = 0.006
Identities = 11/53 (20%), Positives = 15/53 (28%), Gaps = 11/53 (20%)
Query: 243 KMAEMLTKRNSFGSPTHNG----VGGHNGGSSSFGG--MYPPV-----PVPPM 284
T R+S + G GG G+S+ Y P M
Sbjct: 84 SKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSM 136
Score = 36.1 bits (84), Expect = 0.009
Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 16/67 (23%)
Query: 243 KMAEMLTKRNSFGSPTHNG----VGGHNGGSSSFGGM-----YPPV-----PVPPMGPGY 288
MLT+R S G NG GG G + S + Y P + PM
Sbjct: 132 TKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPM--IE 189
Query: 289 PVSGGGM 295
G+
Sbjct: 190 ARKNHGL 196
Score = 30.4 bits (69), Expect = 0.63
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 4/31 (12%)
Query: 244 MAEMLTKRNSFGSPTHNG----VGGHNGGSS 270
+ M+ R + G VGG NG
Sbjct: 184 LCPMIEARKNHGLVFVKDKIFAVGGQNGLGG 214
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway,
protein-binding, UBI degradation, UBL conjugation
pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Length = 301
Score = 36.5 bits (85), Expect = 0.008
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 243 KMAEMLTKRNSFGSPTHNG----VGGHNGGSS 270
+A M +R G+ T GG +G
Sbjct: 95 SVAPMNVRRGLAGATTLGDMIYVSGGFDGSRR 126
Score = 31.1 bits (71), Expect = 0.45
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 244 MAEMLTKRNSFGSPTHNG----VGGHNGGS 269
+ +M T R G +G +GG++G +
Sbjct: 143 LGDMQTAREGAGLVVASGVIYCLGGYDGLN 172
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat
motif, protein binding; HET: MSE; 1.35A {Homo sapiens}
SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A
2z32_A 3ade_A
Length = 308
Score = 35.8 bits (83), Expect = 0.012
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 243 KMAEMLTKRNSFGSPTHNG----VGGHNGGSS 270
A M RN G +G VGG +G
Sbjct: 104 PCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIH 135
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding,
cytoskeleton; 1.78A {Homo sapiens}
Length = 315
Score = 34.7 bits (80), Expect = 0.031
Identities = 8/53 (15%), Positives = 13/53 (24%), Gaps = 11/53 (20%)
Query: 243 KMAEMLTKRNSFGSPTHNG----VGGHNGGSSSFGGM--YPPV-----PVPPM 284
+ + +H +GG M Y P + PM
Sbjct: 131 ESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPM 183
Score = 32.3 bits (74), Expect = 0.18
Identities = 12/65 (18%), Positives = 16/65 (24%), Gaps = 15/65 (23%)
Query: 243 KMAEMLTKRNSFGSPTHNG----VGGHNGGSSSFGG----MYPPV-----PVPPMGPGYP 289
M + + R FG VGG Y + P+ Y
Sbjct: 81 GMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL--PYV 138
Query: 290 VSGGG 294
V G
Sbjct: 139 VYGHT 143
Score = 31.6 bits (72), Expect = 0.33
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 243 KMAEMLTKRNSFGSPTHNG----VGGHNGGS 269
++A M T R+ FG+ H+G G
Sbjct: 179 ELAPMQTARSLFGATVHDGRIIVAAGVTDTG 209
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding,
invasion and metastasis, UBL conjugation pathway, UBL
protein folding; 2.00A {Rattus norvegicus}
Length = 318
Score = 34.6 bits (80), Expect = 0.036
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 13/63 (20%)
Query: 244 MAEMLTKRNSFGSPTHNG----VGGHNGGSSSFGGM--YPPV-----PVPPMGPGYPVSG 292
+ + K +HNG +GG + Y P + PM P S
Sbjct: 142 VKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPM--KTPRSM 199
Query: 293 GGM 295
G+
Sbjct: 200 FGV 202
Score = 33.9 bits (78), Expect = 0.058
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 14/64 (21%)
Query: 243 KMAEMLTKRNSFGSPTHNG----VGGHNGGSSSFGG---MYPPV-----PVPPMGPGYPV 290
+ + + R FG + V G + + + Y PV V + V
Sbjct: 92 GLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL--PIKV 149
Query: 291 SGGG 294
G
Sbjct: 150 YGHN 153
Score = 31.5 bits (72), Expect = 0.29
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 243 KMAEMLTKRNSFGSPTHNG----VGGHNGGS 269
+A M T R+ FG H G GG
Sbjct: 189 DLAPMKTPRSMFGVAIHKGKIVIAGGVTEDG 219
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.6 bits (76), Expect = 0.048
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 114 ASEIEEESETTESNEQKEMLIAS-NKSLAEYNLSQEEALLEKKSQLLDLNEQLTQ 167
++E S ++ K L E+N Q E + + K ++ Q
Sbjct: 95 RKRLQELDA--ASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQ 147
Score = 32.1 bits (72), Expect = 0.14
Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 26/103 (25%)
Query: 49 IASNKSLAEYNLSQEEALLE-KKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVL 107
IA L + + E++ + ++ Q ++L +L + + + +
Sbjct: 74 IAQADRLTQ----EPESIRKWREEQ----RKRLQELDAASKVMEQEWR------------ 113
Query: 108 ALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEA 150
+ A ++EE ++ +EQ E +N+ + Q +A
Sbjct: 114 ---EKAKKDLEEWNQRQ--SEQVEKNKINNRIADKAFYQQPDA 151
Score = 30.9 bits (69), Expect = 0.37
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 13 ISELKELVNDEETFNNFTKEATATLT---TESNEQKEMLIAS-NKSLAEYNLSQEEALLE 68
I++ L + E+ + +E L S ++ K L E+N Q E + +
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 69 KKSQLLDLNEQLTQ 82
K ++ Q
Sbjct: 134 NKINNRIADKAFYQ 147
Score = 29.7 bits (66), Expect = 0.99
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 2 ENLESLLEHLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLS 61
E L+ LD + +E K+ +EQ E +N+ +
Sbjct: 92 EEQRKRLQELDAASKVME---QEWREKAKKDLEE-WNQRQSEQVEKNKINNRIADKAFYQ 147
Query: 62 QEEA 65
Q +A
Sbjct: 148 QPDA 151
>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase,
cholesterol, biocynthesis, HMG-COA, NADPH, statin,
alternative splicing; HET: RIE; 1.70A {Homo sapiens}
PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A*
3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A*
1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A*
...
Length = 441
Score = 31.9 bits (72), Expect = 0.28
Identities = 16/111 (14%), Positives = 41/111 (36%), Gaps = 15/111 (13%)
Query: 176 VELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDK------------- 222
+ + + + + + A S++ E ++ ++G DK
Sbjct: 211 IRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGK 270
Query: 223 --FLETFTPKRILMHLRRIKADKMAEMLTKRNSFGSPTHNGVGGHNGGSSS 271
E P +++ + + + M E+ +N GS +GG+N +++
Sbjct: 271 SVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAAN 321
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 31.0 bits (69), Expect = 0.55
Identities = 41/260 (15%), Positives = 82/260 (31%), Gaps = 16/260 (6%)
Query: 64 EALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHK--NNVSTDTVLALLQTAASEIEEES 121
+ L+++ Q D ++ +L S+ K+ K N ++ + V + A ++
Sbjct: 55 KGLIDEVDQ--DFTSRINKLRDSLF---NYQKNSKDSNTLTKNIVELMRGDFAKANNNDN 109
Query: 122 ETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKS 181
+ NE I + L + Q + + + + D + +L ++ K+ K
Sbjct: 110 TFKQINEDLRSRI---EILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKG 166
Query: 182 HKNNVSTDTV----LALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLR 237
+ V Q ++ + + I + P+ L+
Sbjct: 167 SCSRALEHKVDLEDYKNQQKQLEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQ 226
Query: 238 RIKADKMAEMLTKRNSFGSPTHNGVGGHNGGSSSFGGMYPPVPVPPMGPGYPVSGGGMPL 297
+ A + ++ T G G G S S G P P PG G P
Sbjct: 227 EAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGT--GLAPGSPRKPGTSSIGNVNPG 284
Query: 298 PHIQMTPYPQLPQMPTPSYP 317
+ + P P P
Sbjct: 285 SYGPGSSGTWNPGRPEPGSA 304
Score = 27.9 bits (61), Expect = 5.4
Identities = 16/64 (25%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Query: 255 GSPTHNGVGGHNGGSSSFGGMYPPVPVPPMGPGYPVSGG-GMPLPHIQMTPYPQLPQMPT 313
G P G N G G P P PG + G P P T P P+ +
Sbjct: 297 GRPEPGSAGTWNPGRPEPGSAGTWNPGRP-EPGSAGTWNPGRPEPGSAGTWNPGRPEPGS 355
Query: 314 PSYP 317
Sbjct: 356 AGTW 359
Score = 27.5 bits (60), Expect = 6.6
Identities = 12/60 (20%), Positives = 14/60 (23%), Gaps = 1/60 (1%)
Query: 255 GSPTHNGVGGHNGGSSSFGGMYPPVPVPPMGPGYPVSGGGMPLPHIQMTPYPQLPQMPTP 314
GS G GS+ P P SG P + P P
Sbjct: 328 GSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSFRPDSSGHGNIR-PSSPDW 386
Score = 27.1 bits (59), Expect = 9.3
Identities = 14/63 (22%), Positives = 17/63 (26%), Gaps = 8/63 (12%)
Query: 255 GSPTHNGVGGHNGGSSSFGGMYPPVPVPPMGPGYPVSGGGMPLPHIQMTPYPQLPQMPTP 314
GS G GS+ G + P P G G P + P P P
Sbjct: 289 GSSGTWNPGRPEPGSA---GTWNPGRPEPGSAGTWNPGRPEP-----GSAGTWNPGRPEP 340
Query: 315 SYP 317
Sbjct: 341 GSA 343
>1pv5_A Hypothetical protein YWQG; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.75A {Bacillus subtilis} SCOP:
d.251.1.1
Length = 264
Score = 29.4 bits (65), Expect = 1.6
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 268 GSSSFGGMYPPVPVPPMGPGYPVSGGGMPLPHIQMTPYPQLPQMP 312
S G P P YP G P+ + + +PQ+
Sbjct: 38 YDSKIAGD----PYFPKHETYPTDENGQPMKLLAQINFSHIPQLD 78
>2wvq_A Small S protein; prion-binding protein, prion, prion regulatory
domain, heter incompatibility, prion- binding protein;
2.00A {Podospora anserina} PDB: 2wvn_A 2wvo_A
Length = 225
Score = 29.0 bits (64), Expect = 1.6
Identities = 20/166 (12%), Positives = 63/166 (37%), Gaps = 12/166 (7%)
Query: 51 SNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALL 110
+ + + ++ ++++E+ L + ++ ++ + V + +L+ + +
Sbjct: 72 HSDAPTDKSVQLAKSIVEEILLLFESAQKTSKRYELVADQQDLVVFEDKD---------M 122
Query: 111 QTAASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSK 170
+ + S QK+ +A + A Y+ E +++ Q+ ++L +
Sbjct: 123 KPIGRALHRRLNDLVSRRQKQTSLAKKTAWALYDGKSLEKIVD---QVARFVDELEKAFP 179
Query: 171 SVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNG 216
+L + V + L +L+ AA I+ + ++
Sbjct: 180 IEAVCHKLAEIEIEEVEDEASLTILKDAAGGIDAAMSDAAAQKIDA 225
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 29.1 bits (64), Expect = 2.5
Identities = 42/200 (21%), Positives = 74/200 (37%), Gaps = 8/200 (4%)
Query: 14 SELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQL 73
S KEL FN EA +T + ++ + + + E+ + E LE KS
Sbjct: 584 SSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGN 643
Query: 74 LDLNEQLTQLSKSVESKVELIKSHKN----NVSTDTVLALLQTAASEIEEESETTESNEQ 129
+ E Q + + LI N ++ L ++ S+ E+ +
Sbjct: 644 KNKMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFS 703
Query: 130 KEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTD 189
K N +++ EE L K + DL +SK VE+ + KN + D
Sbjct: 704 KSFDEFKNGKNKDFS-KAEETLKALKGSVKDLGINPEWISK-VENLNAALNEFKNGKNKD 761
Query: 190 TVLALLQTAASEIEEESEKV 209
+ + A S++E + V
Sbjct: 762 --FSKVTQAKSDLENSVKDV 779
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 28.6 bits (63), Expect = 3.4
Identities = 7/65 (10%), Positives = 16/65 (24%), Gaps = 4/65 (6%)
Query: 255 GSPTHNGVGGHNGGSSSFGGMYPPVP--VPPMGPGYPVSGGGMPLPHIQMTPYPQLPQMP 312
+G + + ++ + M + + + P QM
Sbjct: 49 PQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVP--VQMG 106
Query: 313 TPSYP 317
TP
Sbjct: 107 TPLQQ 111
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 28.4 bits (64), Expect = 3.6
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 274 GMYPPVPVPPMGPGYPVSGG 293
G Y P PP G+ G
Sbjct: 75 GRYDPSVKPPFDIGFEGIGE 94
>1w33_A BbcrAsp-1; complement regulator, complement regulator acquiring
surface protein, LYME borreliosis, factor H binding,
TICK; 2.7A {Borrelia burgdorferi} PDB: 1w3z_A
Length = 181
Score = 27.6 bits (61), Expect = 4.0
Identities = 31/181 (17%), Positives = 64/181 (35%), Gaps = 13/181 (7%)
Query: 13 ISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQ 72
SELK + + E A + E + Y+L E+ ++ K
Sbjct: 4 ASELKAIGKELEDQKKEENIQIAKIAKEKFDFLSTFKVGP-----YDLIDEDIQMKIKRT 58
Query: 73 L---LDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESETTESNEQ 129
L LD ++ + K + ++ KN+ + + L+ + I+ + E Q
Sbjct: 59 LYSSLDYKKENIEKLKEILEILK-----KNSEHYNIIGRLIYHISWGIQFQIEQNLELIQ 113
Query: 130 KEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTD 189
+ S + + + L K+ LNE L +++ + +++ H N D
Sbjct: 114 NGVENLSQEESKSLLMQIKSNLEIKQRLKKTLNETLKVYNQNTQDNEKILAEHFNKYYKD 173
Query: 190 T 190
Sbjct: 174 F 174
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural
genomics, MCSG, S genomics, unknown function; 2.82A
{Synechococcus SP}
Length = 150
Score = 27.3 bits (60), Expect = 4.6
Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 62 QEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEES 121
+EEA E + + + ++QL QL + ++ V+ ++ N V + ++ +
Sbjct: 27 KEEAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKR 86
Query: 122 ETTESNEQKEMLIASNKSLAEYNLSQE 148
+E EQK L+ + E + Q
Sbjct: 87 --SELEEQKRNLLQQQAQVRELEMDQI 111
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM
PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Length = 279
Score = 27.8 bits (61), Expect = 5.0
Identities = 27/191 (14%), Positives = 66/191 (34%), Gaps = 5/191 (2%)
Query: 1 MENLESLLE-HLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYN 59
+E + L L ++ E + +A + K++ + ++ E
Sbjct: 64 IEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGT 123
Query: 60 LSQEEALLE---KKSQLLDLNEQLTQLSKSVESKVELIKSH-KNNVSTDTVLALLQTAAS 115
+ ++SQ L+ + ++ K NV+ + +
Sbjct: 124 FEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQCRVVEPSLSDD 183
Query: 116 EIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESK 175
I++ E M + ++ + + + + + LL+L+E T +S V S+
Sbjct: 184 AIQKVIEHGTEGIFSGMRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQ 243
Query: 176 VELIKSHKNNV 186
E+I + +V
Sbjct: 244 GEMIDRIEFSV 254
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 27.9 bits (61), Expect = 5.2
Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Query: 118 EEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVE 177
E ++ + + E + L EA L+++ + + + L K +E K
Sbjct: 326 EHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHE--QMKKNLEAQHKELEEKRR 383
Query: 178 LIKSHKNNVSTDTVLALLQTAASEIEEESEK 208
+ K N + Q ++ +E+ +K
Sbjct: 384 QFEDEKANWEAQQRILEQQNSSRTLEKNKKK 414
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 27.9 bits (63), Expect = 5.2
Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 21/88 (23%)
Query: 148 EEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVL---------ALLQTA 198
L + + E++ +L KV + + K + D V+ L + A
Sbjct: 209 RHDLEKNDVVVH-TGEKVVRLEGE-NGKVARVITDKRTLDADLVILAAGVSPNTQLARDA 266
Query: 199 ASEIEEESEKVPEEFLNGTIDVDKFLET 226
E++ G I VD + T
Sbjct: 267 GLELDP----------RGAIIVDTRMRT 284
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding
protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A
1jh4_A
Length = 144
Score = 26.7 bits (58), Expect = 6.0
Identities = 6/52 (11%), Positives = 10/52 (19%)
Query: 264 GHNGGSSSFGGMYPPVPVPPMGPGYPVSGGGMPLPHIQMTPYPQLPQMPTPS 315
G ++ P P +Q Q P +
Sbjct: 4 GSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTA 55
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 27.5 bits (62), Expect = 6.0
Identities = 7/19 (36%), Positives = 7/19 (36%)
Query: 274 GMYPPVPVPPMGPGYPVSG 292
G Y P PGY G
Sbjct: 54 GAYAHRIPLPNIPGYEGVG 72
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase;
2.10A {Homo sapiens}
Length = 349
Score = 27.6 bits (62), Expect = 6.4
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 274 GMYPPVPVPPMGPGYPVSG 292
G P P+ PG+ SG
Sbjct: 52 GNIDNPPKTPLVPGFECSG 70
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 27.6 bits (62), Expect = 6.6
Identities = 5/19 (26%), Positives = 6/19 (31%)
Query: 274 GMYPPVPVPPMGPGYPVSG 292
G Y V G+ G
Sbjct: 71 GQYGQPRVKGRPAGFEGVG 89
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 27.3 bits (61), Expect = 7.8
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 160 DLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKV 209
++ QL + + VELI + ++ + + LL EI E S+KV
Sbjct: 5 NMKTQLRAYLEKLTKPVELIATLDDSAKSAEIKELLA----EIAELSDKV 50
>1or4_A Heme-based aerotactic transducer hemat; globin fold, signaling
protein; HET: HEM; 2.15A {Bacillus subtilis} SCOP:
a.1.1.2 PDB: 1or6_A*
Length = 178
Score = 26.8 bits (59), Expect = 8.2
Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 6/92 (6%)
Query: 147 QEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEES 206
QE A + QLT V+ ++++++ D L +L+ I+E
Sbjct: 9 QETAYFSDSNGQQKNRIQLTNKHADVKKQLKMVRL------GDAELYVLEQLQPLIQENI 62
Query: 207 EKVPEEFLNGTIDVDKFLETFTPKRILMHLRR 238
+ + F ++ + L++
Sbjct: 63 VNIVDAFYKNLDHESSLMDIINDHSSVDRLKQ 94
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex,
multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1
PDB: 3c98_B
Length = 267
Score = 27.0 bits (59), Expect = 8.3
Identities = 23/204 (11%), Positives = 73/204 (35%), Gaps = 10/204 (4%)
Query: 1 MENLESLLEHLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNL 60
+E ++ + ++ +E + + + + + S + N
Sbjct: 51 VEEVKRKHSAI-LASPNPDEKTKEELEELMSDIK-KTANKVRSKLKSIEQSIEQEEGLNR 108
Query: 61 SQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEE 120
S + + +K+Q L+ + ++ + + + +T SE E+
Sbjct: 109 SSADLRI-RKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELED 167
Query: 121 SETTESNEQKEMLIASNKSLAEYNLS----QEEALLEKKSQLLDLNEQLTQLSKSVES-- 174
+ + I + S+++ LS + +++ ++ + +L++ ++ VES
Sbjct: 168 MLESGNPAIFASGIIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQG 227
Query: 175 -KVELIKSHKNNVSTDTVLALLQT 197
++ I+ + + A+ T
Sbjct: 228 EMIDRIEYNVEHAVDYVERAVSDT 251
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.305 0.124 0.327
Gapped
Lambda K H
0.267 0.0462 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,426,804
Number of extensions: 258877
Number of successful extensions: 589
Number of sequences better than 10.0: 1
Number of HSP's gapped: 567
Number of HSP's successfully gapped: 97
Length of query: 320
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 226
Effective length of database: 4,077,219
Effective search space: 921451494
Effective search space used: 921451494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 57 (26.4 bits)