RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1409
         (320 letters)



>d2bvla1 c.68.1.22 (A:1-542) Toxin B {Clostridium difficile [TaxId:
           1496]}
          Length = 542

 Score = 28.4 bits (63), Expect = 1.5
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 17/99 (17%)

Query: 126 SNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNN 185
              Q++  +A   +L EY+   E  ++EK  +L D+N                I ++K +
Sbjct: 17  FRTQEDEYVAILDALEEYHNMSENTVVEKYLKLKDINSLTD----------ICIDTYKKS 66

Query: 186 VSTDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFL 224
                +    +   +E+        E   N    V+K L
Sbjct: 67  GRNKALKKFKEYLVTEVL-------ELKNNNLTPVEKNL 98



 Score = 27.6 bits (61), Expect = 2.1
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 41 SNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVES 89
             Q++  +A   +L EY+   E  ++EK  +L D+N        + + 
Sbjct: 17 FRTQEDEYVAILDALEEYHNMSENTVVEKYLKLKDINSLTDICIDTYKK 65


>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 388

 Score = 27.8 bits (62), Expect = 1.9
 Identities = 9/71 (12%), Positives = 23/71 (32%), Gaps = 16/71 (22%)

Query: 157 QLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNG 216
            L+  +E+L+++   + +                 +  +      + E S          
Sbjct: 56  TLIVESEELSKVDNQIGA----------------SIGKIIEILQGLNETSTNAYRTLPIN 99

Query: 217 TIDVDKFLETF 227
            + V ++LE F
Sbjct: 100 NMPVPEYLENF 110


>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 144

 Score = 26.8 bits (59), Expect = 2.2
 Identities = 9/44 (20%), Positives = 12/44 (27%), Gaps = 1/44 (2%)

Query: 272 FGGMYPPVPVPPMGPGYP-VSGGGMPLPHIQMTPYPQLPQMPTP 314
            G      P     P Y   +G   P  H+   P   + Q    
Sbjct: 3   LGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVH 46


>d1pv5a_ d.251.1.1 (A:) Hypothetical protein YwqG {Bacillus subtilis
           [TaxId: 1423]}
          Length = 261

 Score = 26.5 bits (58), Expect = 3.7
 Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 4/47 (8%)

Query: 268 GSSSFGGMYPPVPVPPMGPGYPVSGGGMPLPHIQMTPYPQLPQMPTP 314
             S   G     P  P    YP    G P+  +    +  +PQ+   
Sbjct: 35  YDSKIAGD----PYFPKHETYPTDENGQPMKLLAQINFSHIPQLDGY 77


>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4
          (Tug) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 76

 Score = 25.0 bits (55), Expect = 4.2
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 52 NKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHK 98
            +    + +  E  L+ +  +LDL+ Q    +    +K+E++   +
Sbjct: 28 EDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSR 74



 Score = 25.0 bits (55), Expect = 4.2
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 137 NKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHK 183
             +    + +  E  L+ +  +LDL+ Q    +    +K+E++   +
Sbjct: 28  EDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSR 74


>d1dqaa4 d.179.1.1 (A:462-586,A:704-870) Substrate-binding domain of
           HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]}
          Length = 292

 Score = 26.4 bits (58), Expect = 4.7
 Identities = 10/46 (21%), Positives = 22/46 (47%)

Query: 225 ETFTPKRILMHLRRIKADKMAEMLTKRNSFGSPTHNGVGGHNGGSS 270
           E   P +++  + +   + M E+   +N  GS     +GG+N  ++
Sbjct: 131 EAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAA 176


>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating)
           subunit 1 {Thermus thermophilus [TaxId: 274]}
          Length = 437

 Score = 25.5 bits (55), Expect = 8.9
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 14/96 (14%)

Query: 199 ASEIEEESEKVPEEFLNGTIDVDKFL-ETFTPKRILMHLRRIKADKMAEMLTKRNSF--- 254
           A+ +E+    +P+E L+  ID+ + L E     ++L  LRR+ A +         +F   
Sbjct: 20  AASLEDLFAHLPKEILSPPIDLPEPLPEW----KVLEELRRL-AAQNLPAHK---AFLGG 71

Query: 255 GSPTH--NGVGGHNGGSSSFGGMYPPVPVPPMGPGY 288
           G  +H    V         F   Y P          
Sbjct: 72  GVRSHHVPPVVQALAARGEFLTAYTPYQPEVSQGVL 107


>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated
           protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 65

 Score = 23.9 bits (51), Expect = 9.9
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 187 STDTVLALLQTAASEIEEESEKVPEEF--LNGTIDVDKFLETFTPKRILMHLRRIK 240
               +   L+    +++EES ++      ++   D+D+F++ +   R   HLRR K
Sbjct: 5   GDIALKKKLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKNYLDIRTQYHLRREK 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.305    0.124    0.327 

Gapped
Lambda     K      H
   0.267   0.0645    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,049,028
Number of extensions: 47100
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 23
Length of query: 320
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 235
Effective length of database: 1,240,546
Effective search space: 291528310
Effective search space used: 291528310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 53 (24.4 bits)