BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14091
(694 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 108/390 (27%), Positives = 167/390 (42%), Gaps = 59/390 (15%)
Query: 38 GGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHT 97
G + VAL+ V +WG G LG+G + P P + + SV CG HT
Sbjct: 12 GASHSVALLSGDIVCSWGRGEDGQLGHGDAEDR---PSPTQLSALDGHQIVSVTCGADHT 68
Query: 98 LVLTSSG--VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQG 155
+ + SG VY+WG +G+LG G P I AL IR+ I+ G H LA+T +G
Sbjct: 69 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEG 128
Query: 156 KLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSG 215
++ +WG +GQLGL ED PQ ++A E I G H+ A+T+ G ++ +G G
Sbjct: 129 EVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWG 188
Query: 216 IFGQLGTGSNTKHKVPIELYGLP-EPISMIATGYFHNLALGTSNRLYTWGSSPQVLRSQS 274
+G LG G T VP + E +SM+A G+ H +++ S LYT+G S
Sbjct: 189 RYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY------ 242
Query: 275 QAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASEKNETAEYASFM 334
Q+ + L + HL P A + ++ +
Sbjct: 243 ------------GQLGHGDLED----------------HLIPHKLEALSNSFISQISGGF 274
Query: 335 QSFLSSADDG------------------MAHMSPTLVDTSHVKAPILQICCGCHHSMLLS 376
+ ++ DG + SP V ++Q+ CG H++ ++
Sbjct: 275 RHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPD-DQKVVQVSCGWRHTLAVT 333
Query: 377 REGRVYTWGRNVDGQLGNGSRKEVHTPTAI 406
V+ WGR +GQLG G + + P I
Sbjct: 334 ERNNVFAWGRGTNGQLGIGESVDRNFPKII 363
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 101/392 (25%), Positives = 165/392 (42%), Gaps = 50/392 (12%)
Query: 90 VACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHS 148
++ G H++ L S V +WG + GQLG G + P P + AL ++VS++ G H+
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 149 LAITSQG-KLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAG 207
+A + G ++Y+WGWG G+LG D+ P +KAL I G +H +A+T G
Sbjct: 69 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEG 128
Query: 208 RVWAFGSGIFGQLGTGSNTKHKVPIELYGLPE-PISMIATGYFHNLALGTSNRLYTWGSS 266
V ++G GQLG G VP ++ I M+A G H A+ LY WG
Sbjct: 129 EVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWG-- 186
Query: 267 PQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASEKNE 326
+ N L + + + P+ T +
Sbjct: 187 -------------------WGRYGNLGLGDRTDRLV-PERVTSTGGEKMSMVACGWRHTI 226
Query: 327 TAEYASFMQSFLSSA------DDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGR 380
+ Y+ + ++ S D H+ P ++ + + I QI G H+M L+ +G+
Sbjct: 227 SVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQISGGFRHTMALTSDGK 285
Query: 381 VYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVXXXXXXXXXXXXIKHITCGGDFS 440
+Y WG N GQ+G G+ + +P + + ++CG +
Sbjct: 286 LYGWGWNKFGQVGVGNNLDQCSPVQVRF----------------PDDQKVVQVSCGWRHT 329
Query: 441 LAMDESGKVWAWGTNVQGQVPRYIGELLFYKF 472
LA+ E V+AWG GQ+ IGE + F
Sbjct: 330 LAVTERNNVFAWGRGTNGQLG--IGESVDRNF 359
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 143/332 (43%), Gaps = 34/332 (10%)
Query: 362 ILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVXXXX 421
+L I G HS+ L V +WGR DGQLG+G ++ +PT +S
Sbjct: 6 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLS-------------- 51
Query: 422 XXXXXXXXIKHITCGGDFSLAMDESG-KVWAWGTNVQGQVPRYIGELLFYKFNFDPV-GP 479
I +TCG D ++A +SG +V++WG G++ LF + G
Sbjct: 52 --ALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGI 109
Query: 480 LVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSLHIIPVLSIIQNSEPSQSNVAWSL 539
+K I D A+T + SW + L ++S Q A+
Sbjct: 110 RIKQIACGD---SHCLAVTMEGEVQSWGRNQNGQLGL------GDTEDSLVPQKIQAFEG 160
Query: 540 NDITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRI------DVSSVAC 593
I ++ ++ W + + +++ R+ +S VAC
Sbjct: 161 IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC 220
Query: 594 GRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAI 652
G HT+ ++ SG +Y +G S+YGQLG G ++ P + AL+N + IS G H++A+
Sbjct: 221 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMAL 280
Query: 653 TSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVK 684
TS GKLY WGW GQ+G+ D P V+
Sbjct: 281 TSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVR 312
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 140/330 (42%), Gaps = 43/330 (13%)
Query: 137 RVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGG 196
+V+ ISAG HS+A+ S + +WG G GQLG ED P + AL+ I+S G
Sbjct: 5 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 64
Query: 197 HAHSIALTKAG-RVWAFGSGIFGQLGTGSNTKHKVPIELYGLPE-PISMIATGYFHNLAL 254
H++A +++G V+++G G FG+LG G+++ P+ + L I IA G H LA+
Sbjct: 65 ADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAV 124
Query: 255 GTSNRLYTWGSSPQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHL 314
+ +WG NQ L + + I +
Sbjct: 125 TMEGEVQSWG---------------------RNQNGQLGLGDTEDSLVPQKIQAFEGIRI 163
Query: 315 APSPSSASEKNETAEYAS-FMQSFLSSADDGMAHMSPTLVD---TSHVKAPILQICCGCH 370
+ A E + + + G+ + LV TS + + CG
Sbjct: 164 KMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWR 223
Query: 371 HSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVXXXXXXXXXXXXI 430
H++ +S G +YT+G + GQLG+G ++ P + +++S I
Sbjct: 224 HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLE---ALSNS-------------FI 267
Query: 431 KHITCGGDFSLAMDESGKVWAWGTNVQGQV 460
I+ G ++A+ GK++ WG N GQV
Sbjct: 268 SQISGGFRHTMALTSDGKLYGWGWNKFGQV 297
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 586 IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISA 644
I + +ACG H L +T G V +WG +Q GQLG+G + S P+ I A IR+ ++A
Sbjct: 109 IRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAA 168
Query: 645 GQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEISSLV 694
G H+ A+T G LY WGWG +G LGL D P+ V + E S+V
Sbjct: 169 GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMV 218
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 4/136 (2%)
Query: 51 VHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSG-VYAWG 109
++T+G S YG LG+G + P + N+ I S ++ G HT+ LTS G +Y WG
Sbjct: 234 LYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFI--SQISGGFRHTMALTSDGKLYGWG 290
Query: 110 SSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLG 169
+++GQ+G+G P + + +VV +S G H+LA+T + ++ WG G +GQLG
Sbjct: 291 WNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 350
Query: 170 LNTVEDMSEPQLVKAL 185
+ D + P++++AL
Sbjct: 351 IGESVDRNFPKIIEAL 366
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Query: 588 VSSVACGRLHTLVLTSSG--VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAG 645
+ SV CG HT+ + SG VY+WG +G+LG G P I AL IR+ I+ G
Sbjct: 58 IVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 117
Query: 646 QYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALE 687
H LA+T +G++ +WG +GQLGL ED PQ ++A E
Sbjct: 118 DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE 159
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Query: 588 VSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQ 646
+S ++ G HT+ LTS G +Y WG +++GQ+G+G P + + +VV +S G
Sbjct: 267 ISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGW 326
Query: 647 YHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKAL 686
H+LA+T + ++ WG G +GQLG+ D + P++++AL
Sbjct: 327 RHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 109/292 (37%), Gaps = 53/292 (18%)
Query: 362 ILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVXXXX 421
I QI CG H + ++ EG V +WGRN +GQLG G ++ P I
Sbjct: 111 IKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ-------------- 156
Query: 422 XXXXXXXXIKHITCGGDFSLAMDESGKVWAWGTNVQGQ----------VPRYIGELLFYK 471
IK + G + + A+ E G ++ WG G VP + K
Sbjct: 157 --AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEK 214
Query: 472 FNFDPVGPLVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSLHIIP-VLSIIQNSEP 530
+ G W S + + + + + D H+IP L + NS
Sbjct: 215 MSMVACG-------WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFI 267
Query: 531 SQSNVAWSLNDITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRI---- 586
SQ ++ L+ GK W N + + Q +++
Sbjct: 268 SQ--ISGGFRHTMALTSDGK----------LYGWGWNKFGQVGVGNNLDQCSPVQVRFPD 315
Query: 587 --DVSSVACGRLHTLVLTS-SGVYAWGSSQYGQLGIGLIDQSPHPRIIPALA 635
V V+CG HTL +T + V+AWG GQLGIG P+II AL+
Sbjct: 316 DQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 367
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 586 IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISA 644
I + VA G HT +T G +Y WG +YG LG+G P + + ++ ++
Sbjct: 161 IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC 220
Query: 645 GQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEISSLV 694
G H+++++ G LYT+GW +GQLG +ED P ++AL + S +
Sbjct: 221 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQI 270
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 591 VACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHS 649
++ G H++ L S V +WG + GQLG G + P P + AL ++VS++ G H+
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 650 LAITSQG-KLYTWGWGVHGQLGLNTVEDMSEPQLVKAL 686
+A + G ++Y+WGWG G+LG D+ P +KAL
Sbjct: 69 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKAL 106
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 38 GGFYH-VALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLH 96
GGF H +AL + +++ WG + +G +G G + Q S P V + + K V V+CG H
Sbjct: 272 GGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS-PVQVRFPDDQK--VVQVSCGWRH 328
Query: 97 TLVLTS-SGVYAWGSSQYGQLGIGLIDQSPHPRIIPALA 134
TL +T + V+AWG GQLGIG P+II AL+
Sbjct: 329 TLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 367
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 638 RVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALE-HEISSLV 694
+V+ ISAG HS+A+ S + +WG G GQLG ED P + AL+ H+I S+
Sbjct: 5 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVT 62
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/390 (27%), Positives = 168/390 (43%), Gaps = 59/390 (15%)
Query: 38 GGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHT 97
G + VAL+ V +WG G LG+G + P P + + SV CG HT
Sbjct: 12 GASHSVALLSGDIVCSWGRGEDGQLGHGDAEDR---PSPTQLSALDGHQIVSVTCGADHT 68
Query: 98 LVLTSSG--VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQG 155
+ + SG VY+WG +G+LG G P I AL IR+ I+ G H LA+T +G
Sbjct: 69 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEG 128
Query: 156 KLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSG 215
++ +WG +GQLGL ED PQ ++A E I G H+ A+T+ G ++ +G G
Sbjct: 129 EVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWG 188
Query: 216 IFGQLGTGSNTKHKVPIELYGLP-EPISMIATGYFHNLALGTSNRLYTWGSSPQVLRSQS 274
+G LG G T VP + E +SM+A G+ H +++ S LYT+G S
Sbjct: 189 RYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY------ 242
Query: 275 QAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASEKNETAEYASFM 334
Q+ + L + HL P A + ++ +
Sbjct: 243 ------------GQLGHGDLED----------------HLIPHKLEALSNSFISQISGGW 274
Query: 335 QSFLSSADDG------------------MAHMSPTLVDTSHVKAPILQICCGCHHSMLLS 376
+ ++ DG + SP V + ++Q+ CG H++ ++
Sbjct: 275 RHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ-KVVQVSCGWRHTLAVT 333
Query: 377 REGRVYTWGRNVDGQLGNGSRKEVHTPTAI 406
V+ WGR +GQLG G + + P I
Sbjct: 334 ERNNVFAWGRGTNGQLGIGESVDRNFPKII 363
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 101/392 (25%), Positives = 165/392 (42%), Gaps = 50/392 (12%)
Query: 90 VACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHS 148
++ G H++ L S V +WG + GQLG G + P P + AL ++VS++ G H+
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 149 LAITSQG-KLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAG 207
+A + G ++Y+WGWG G+LG D+ P +KAL I G +H +A+T G
Sbjct: 69 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEG 128
Query: 208 RVWAFGSGIFGQLGTGSNTKHKVPIELYGLPE-PISMIATGYFHNLALGTSNRLYTWGSS 266
V ++G GQLG G VP ++ I M+A G H A+ LY WG
Sbjct: 129 EVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWG-- 186
Query: 267 PQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASEKNE 326
+ N L + + + P+ T +
Sbjct: 187 -------------------WGRYGNLGLGDRTDRLV-PERVTSTGGEKMSMVACGWRHTI 226
Query: 327 TAEYASFMQSFLSSA------DDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGR 380
+ Y+ + ++ S D H+ P ++ + + I QI G H+M L+ +G+
Sbjct: 227 SVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQISGGWRHTMALTSDGK 285
Query: 381 VYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVXXXXXXXXXXXXIKHITCGGDFS 440
+Y WG N GQ+G G+ + +P + + ++CG +
Sbjct: 286 LYGWGWNKFGQVGVGNNLDQCSPVQVRF----------------PDDQKVVQVSCGWRHT 329
Query: 441 LAMDESGKVWAWGTNVQGQVPRYIGELLFYKF 472
LA+ E V+AWG GQ+ IGE + F
Sbjct: 330 LAVTERNNVFAWGRGTNGQLG--IGESVDRNF 359
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 143/332 (43%), Gaps = 34/332 (10%)
Query: 362 ILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVXXXX 421
+L I G HS+ L V +WGR DGQLG+G ++ +PT +S
Sbjct: 6 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLS-------------- 51
Query: 422 XXXXXXXXIKHITCGGDFSLAMDESG-KVWAWGTNVQGQVPRYIGELLFYKFNFDPV-GP 479
I +TCG D ++A +SG +V++WG G++ LF + G
Sbjct: 52 --ALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGI 109
Query: 480 LVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSLHIIPVLSIIQNSEPSQSNVAWSL 539
+K I D A+T + SW + L ++S Q A+
Sbjct: 110 RIKQIACGD---SHCLAVTMEGEVQSWGRNQNGQLGL------GDTEDSLVPQKIQAFEG 160
Query: 540 NDITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRI------DVSSVAC 593
I ++ ++ W + + +++ R+ +S VAC
Sbjct: 161 IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC 220
Query: 594 GRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAI 652
G HT+ ++ SG +Y +G S+YGQLG G ++ P + AL+N + IS G H++A+
Sbjct: 221 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMAL 280
Query: 653 TSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVK 684
TS GKLY WGW GQ+G+ D P V+
Sbjct: 281 TSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVR 312
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 140/330 (42%), Gaps = 43/330 (13%)
Query: 137 RVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGG 196
+V+ ISAG HS+A+ S + +WG G GQLG ED P + AL+ I+S G
Sbjct: 5 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 64
Query: 197 HAHSIALTKAG-RVWAFGSGIFGQLGTGSNTKHKVPIELYGLPE-PISMIATGYFHNLAL 254
H++A +++G V+++G G FG+LG G+++ P+ + L I IA G H LA+
Sbjct: 65 ADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAV 124
Query: 255 GTSNRLYTWGSSPQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHL 314
+ +WG NQ L + + I +
Sbjct: 125 TMEGEVQSWG---------------------RNQNGQLGLGDTEDSLVPQKIQAFEGIRI 163
Query: 315 APSPSSASEKNETAEYAS-FMQSFLSSADDGMAHMSPTLVD---TSHVKAPILQICCGCH 370
+ A E + + + G+ + LV TS + + CG
Sbjct: 164 KMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWR 223
Query: 371 HSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVXXXXXXXXXXXXI 430
H++ +S G +YT+G + GQLG+G ++ P + +++S I
Sbjct: 224 HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLE---ALSNS-------------FI 267
Query: 431 KHITCGGDFSLAMDESGKVWAWGTNVQGQV 460
I+ G ++A+ GK++ WG N GQV
Sbjct: 268 SQISGGWRHTMALTSDGKLYGWGWNKFGQV 297
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 586 IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISA 644
I + +ACG H L +T G V +WG +Q GQLG+G + S P+ I A IR+ ++A
Sbjct: 109 IRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAA 168
Query: 645 GQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEISSLV 694
G H+ A+T G LY WGWG +G LGL D P+ V + E S+V
Sbjct: 169 GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMV 218
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 4/136 (2%)
Query: 51 VHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSG-VYAWG 109
++T+G S YG LG+G + P + N+ I S ++ G HT+ LTS G +Y WG
Sbjct: 234 LYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFI--SQISGGWRHTMALTSDGKLYGWG 290
Query: 110 SSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLG 169
+++GQ+G+G P + + +VV +S G H+LA+T + ++ WG G +GQLG
Sbjct: 291 WNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 350
Query: 170 LNTVEDMSEPQLVKAL 185
+ D + P++++AL
Sbjct: 351 IGESVDRNFPKIIEAL 366
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Query: 588 VSSVACGRLHTLVLTSSG--VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAG 645
+ SV CG HT+ + SG VY+WG +G+LG G P I AL IR+ I+ G
Sbjct: 58 IVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 117
Query: 646 QYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALE 687
H LA+T +G++ +WG +GQLGL ED PQ ++A E
Sbjct: 118 DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE 159
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Query: 588 VSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQ 646
+S ++ G HT+ LTS G +Y WG +++GQ+G+G P + + +VV +S G
Sbjct: 267 ISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGW 326
Query: 647 YHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKAL 686
H+LA+T + ++ WG G +GQLG+ D + P++++AL
Sbjct: 327 RHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 109/292 (37%), Gaps = 53/292 (18%)
Query: 362 ILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVXXXX 421
I QI CG H + ++ EG V +WGRN +GQLG G ++ P I
Sbjct: 111 IKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ-------------- 156
Query: 422 XXXXXXXXIKHITCGGDFSLAMDESGKVWAWGTNVQGQ----------VPRYIGELLFYK 471
IK + G + + A+ E G ++ WG G VP + K
Sbjct: 157 --AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEK 214
Query: 472 FNFDPVGPLVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSLHIIP-VLSIIQNSEP 530
+ G W S + + + + + D H+IP L + NS
Sbjct: 215 MSMVACG-------WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFI 267
Query: 531 SQSNVAWSLNDITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRI---- 586
SQ + W L+ GK W N + + Q +++
Sbjct: 268 SQISGGW--RHTMALTSDGK----------LYGWGWNKFGQVGVGNNLDQCSPVQVRFPD 315
Query: 587 --DVSSVACGRLHTLVLTS-SGVYAWGSSQYGQLGIGLIDQSPHPRIIPALA 635
V V+CG HTL +T + V+AWG GQLGIG P+II AL+
Sbjct: 316 DQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 367
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 586 IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISA 644
I + VA G HT +T G +Y WG +YG LG+G P + + ++ ++
Sbjct: 161 IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC 220
Query: 645 GQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEISSLV 694
G H+++++ G LYT+GW +GQLG +ED P ++AL + S +
Sbjct: 221 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQI 270
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 591 VACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHS 649
++ G H++ L S V +WG + GQLG G + P P + AL ++VS++ G H+
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 650 LAITSQG-KLYTWGWGVHGQLGLNTVEDMSEPQLVKAL 686
+A + G ++Y+WGWG G+LG D+ P +KAL
Sbjct: 69 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKAL 106
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 38 GGFYH-VALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLH 96
GG+ H +AL + +++ WG + +G +G G + Q S P V + + K V V+CG H
Sbjct: 272 GGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS-PVQVRFPDDQK--VVQVSCGWRH 328
Query: 97 TLVLTS-SGVYAWGSSQYGQLGIGLIDQSPHPRIIPALA 134
TL +T + V+AWG GQLGIG P+II AL+
Sbjct: 329 TLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 367
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 638 RVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALE-HEISSLV 694
+V+ ISAG HS+A+ S + +WG G GQLG ED P + AL+ H+I S+
Sbjct: 5 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVT 62
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 168/375 (44%), Gaps = 29/375 (7%)
Query: 38 GGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHT 97
G + VAL+ V +WG G LG+G + P P + + SV CG HT
Sbjct: 14 GASHSVALLSGDIVCSWGRGEDGQLGHGDAEDR---PSPTQLSALDGHQIVSVTCGADHT 70
Query: 98 LVLTSSG--VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQG 155
+ + SG VY+WG +G+LG G P I AL IR+ I+ G H LA+T +G
Sbjct: 71 VAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTXEG 130
Query: 156 KLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSG 215
++ +WG +GQLGL ED PQ ++A E I G H+ A+T+ G ++ +G G
Sbjct: 131 EVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWG 190
Query: 216 IFGQLGTGSNTKHKVPIELYGL-PEPISMIATGYFHNLALGTSNRLYTWGSSPQVLRSQS 274
+G LG G T VP + E S +A G+ H +++ S LYT+G S
Sbjct: 191 RYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSKYGQLGHG 250
Query: 275 QAQKRA---RMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASEKNETAEYA 331
+ ++ SN F S++ S A + + ++ K +
Sbjct: 251 DLEDHLIPHKLEALSN--------SFISQI-SGGARHTXAL-------TSDGKLYGWGWN 294
Query: 332 SFMQSFLSSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQ 391
F Q + + D + + D V +Q+ CG H++ ++ V+ WGR +GQ
Sbjct: 295 KFGQVGVGNNLDQCSPVQVRFPDDQKV----VQVSCGWRHTLAVTERNNVFAWGRGTNGQ 350
Query: 392 LGNGSRKEVHTPTAI 406
LG G + + P I
Sbjct: 351 LGIGESVDRNFPKII 365
Score = 109 bits (272), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 99/392 (25%), Positives = 163/392 (41%), Gaps = 50/392 (12%)
Query: 90 VACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHS 148
++ G H++ L S V +WG + GQLG G + P P + AL ++VS++ G H+
Sbjct: 11 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 70
Query: 149 LAITSQG-KLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAG 207
+A + G ++Y+WGWG G+LG D+ P +KAL I G +H +A+T G
Sbjct: 71 VAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTXEG 130
Query: 208 RVWAFGSGIFGQLGTGSNTKHKVPIELYGLPE-PISMIATGYFHNLALGTSNRLYTWGSS 266
V ++G GQLG G VP ++ I +A G H A+ LY WG
Sbjct: 131 EVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWG-- 188
Query: 267 PQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASEKNE 326
+ N L + + + P+ T +
Sbjct: 189 -------------------WGRYGNLGLGDRTDRLV-PERVTSTGGEKXSXVACGWRHTI 228
Query: 327 TAEYASFMQSFLSSA------DDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGR 380
+ Y+ + ++ S D H+ P ++ + + I QI G H+ L+ +G+
Sbjct: 229 SVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQISGGARHTXALTSDGK 287
Query: 381 VYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVXXXXXXXXXXXXIKHITCGGDFS 440
+Y WG N GQ+G G+ + +P + + ++CG +
Sbjct: 288 LYGWGWNKFGQVGVGNNLDQCSPVQVRF----------------PDDQKVVQVSCGWRHT 331
Query: 441 LAMDESGKVWAWGTNVQGQVPRYIGELLFYKF 472
LA+ E V+AWG GQ+ IGE + F
Sbjct: 332 LAVTERNNVFAWGRGTNGQLG--IGESVDRNF 361
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 144/339 (42%), Gaps = 37/339 (10%)
Query: 358 VKAP---ILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTS 414
V AP +L I G HS+ L V +WGR DGQLG+G ++ +PT +S
Sbjct: 1 VTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLS------- 53
Query: 415 SEVXXXXXXXXXXXXIKHITCGGDFSLAMDESG-KVWAWGTNVQGQVPRYIGELLFYKFN 473
I +TCG D ++A +SG +V++WG G++ LF
Sbjct: 54 ---------ALDGHQIVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLP 104
Query: 474 FDPV-GPLVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSLHIIPVLSIIQNSEPSQ 532
+ G +K I D A+T + SW + L ++S Q
Sbjct: 105 IKALHGIRIKQIACGD---SHCLAVTXEGEVQSWGRNQNGQLGL------GDTEDSLVPQ 155
Query: 533 SNVAWSLNDITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRI------ 586
A+ I ++ ++ W + + +++ R+
Sbjct: 156 KIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGE 215
Query: 587 DVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAG 645
S VACG HT+ ++ SG +Y +G S+YGQLG G ++ P + AL+N + IS G
Sbjct: 216 KXSXVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG 275
Query: 646 QYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVK 684
H+ A+TS GKLY WGW GQ+G+ D P V+
Sbjct: 276 ARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVR 314
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 586 IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISA 644
I + +ACG H L +T G V +WG +Q GQLG+G + S P+ I A IR+ ++A
Sbjct: 111 IRIKQIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAA 170
Query: 645 GQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEISSLV 694
G H+ A+T G LY WGWG +G LGL D P+ V + E S V
Sbjct: 171 GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXV 220
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 77/136 (56%), Gaps = 4/136 (2%)
Query: 51 VHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSG-VYAWG 109
++T+G S YG LG+G + P + N+ I S ++ G HT LTS G +Y WG
Sbjct: 236 LYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFI--SQISGGARHTXALTSDGKLYGWG 292
Query: 110 SSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLG 169
+++GQ+G+G P + + +VV +S G H+LA+T + ++ WG G +GQLG
Sbjct: 293 WNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 352
Query: 170 LNTVEDMSEPQLVKAL 185
+ D + P++++AL
Sbjct: 353 IGESVDRNFPKIIEAL 368
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Query: 588 VSSVACGRLHTLVLTSSG--VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAG 645
+ SV CG HT+ + SG VY+WG +G+LG G P I AL IR+ I+ G
Sbjct: 60 IVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 119
Query: 646 QYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALE 687
H LA+T +G++ +WG +GQLGL ED PQ ++A E
Sbjct: 120 DSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE 161
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 588 VSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQ 646
+S ++ G HT LTS G +Y WG +++GQ+G+G P + + +VV +S G
Sbjct: 269 ISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGW 328
Query: 647 YHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKAL 686
H+LA+T + ++ WG G +GQLG+ D + P++++AL
Sbjct: 329 RHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 368
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 586 IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISA 644
I + VA G HT +T G +Y WG +YG LG+G P + + + ++
Sbjct: 163 IRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVAC 222
Query: 645 GQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEISSLV 694
G H+++++ G LYT+GW +GQLG +ED P ++AL + S +
Sbjct: 223 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQI 272
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 109/292 (37%), Gaps = 53/292 (18%)
Query: 362 ILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVXXXX 421
I QI CG H + ++ EG V +WGRN +GQLG G ++ P I
Sbjct: 113 IKQIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ-------------- 158
Query: 422 XXXXXXXXIKHITCGGDFSLAMDESGKVWAWGTNVQGQ----------VPRYIGELLFYK 471
IK + G + + A+ E G ++ WG G VP + K
Sbjct: 159 --AFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEK 216
Query: 472 FNFDPVGPLVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSLHIIP-VLSIIQNSEP 530
+ G W S + + + + + D H+IP L + NS
Sbjct: 217 XSXVACG-------WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFI 269
Query: 531 SQSNVAWSLNDITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRI---- 586
SQ ++ L+ GK W N + + Q +++
Sbjct: 270 SQ--ISGGARHTXALTSDGK----------LYGWGWNKFGQVGVGNNLDQCSPVQVRFPD 317
Query: 587 --DVSSVACGRLHTLVLTS-SGVYAWGSSQYGQLGIGLIDQSPHPRIIPALA 635
V V+CG HTL +T + V+AWG GQLGIG P+II AL+
Sbjct: 318 DQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 369
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 591 VACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHS 649
++ G H++ L S V +WG + GQLG G + P P + AL ++VS++ G H+
Sbjct: 11 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 70
Query: 650 LAITSQG-KLYTWGWGVHGQLGLNTVEDMSEPQLVKAL 686
+A + G ++Y+WGWG G+LG D+ P +KAL
Sbjct: 71 VAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKAL 108
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 38 GGFYHV-ALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLH 96
GG H AL + +++ WG + +G +G G + Q S P V + + K V V+CG H
Sbjct: 274 GGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCS-PVQVRFPDDQK--VVQVSCGWRH 330
Query: 97 TLVLTS-SGVYAWGSSQYGQLGIGLIDQSPHPRIIPALA 134
TL +T + V+AWG GQLGIG P+II AL+
Sbjct: 331 TLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 369
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 638 RVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALE-HEISSLV 694
+V+ ISAG HS+A+ S + +WG G GQLG ED P + AL+ H+I S+
Sbjct: 7 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVT 64
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 118/217 (54%), Gaps = 5/217 (2%)
Query: 50 RVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSG-VYAW 108
V++WG +G LG+G + S + P P+ I + +ACG H L +T G V +W
Sbjct: 89 EVYSWGWGDFGRLGHGNS-SDLFTPLPIKALHG--IRIKQIACGDSHCLAVTMEGEVQSW 145
Query: 109 GSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQL 168
G +Q GQLG+G + S P+ I A IR+ ++AG H+ A+T G LY WGWG +G L
Sbjct: 146 GRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNL 205
Query: 169 GLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKH 228
GL D P+ V + E + G H+I+++ +G ++ +G +GQLG G H
Sbjct: 206 GLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDH 265
Query: 229 KVPIELYGLPEP-ISMIATGYFHNLALGTSNRLYTWG 264
+P +L L IS I+ G+ H +AL + +LY WG
Sbjct: 266 LIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWG 302
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 107/390 (27%), Positives = 165/390 (42%), Gaps = 59/390 (15%)
Query: 38 GGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHT 97
G + VAL+ V +WG G LG+G + P P + + SV CG HT
Sbjct: 24 GASHSVALLSGDIVCSWGRGEDGQLGHGDAEDR---PSPTQLSALDGHQIVSVTCGADHT 80
Query: 98 LVLTSSG--VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQG 155
+ + SG VY+WG +G+LG G P I AL IR+ I+ G H LA+T +G
Sbjct: 81 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEG 140
Query: 156 KLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSG 215
++ +WG +GQLGL ED PQ ++A E I G H+ A+T+ G ++ +G G
Sbjct: 141 EVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWG 200
Query: 216 IFGQLGTGSNTKHKVPIELYGLP-EPISMIATGYFHNLALGTSNRLYTWGSSPQVLRSQS 274
+G LG G T VP + E +SM+A G+ H +++ S LYT+G S
Sbjct: 201 RYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY------ 254
Query: 275 QAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASEKNETAEYASFM 334
Q+ + L + HL P A + ++ +
Sbjct: 255 ------------GQLGHGDLED----------------HLIPHKLEALSNSFISQISGGW 286
Query: 335 QSFLSSADDG------------------MAHMSPTLVDTSHVKAPILQICCGCHHSMLLS 376
+ ++ DG + SP V + + C G H++ ++
Sbjct: 287 RHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSC-GWRHTLAVT 345
Query: 377 REGRVYTWGRNVDGQLGNGSRKEVHTPTAI 406
V+ WGR +GQLG G + + P I
Sbjct: 346 ERNNVFAWGRGTNGQLGIGESVDRNFPKII 375
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 101/392 (25%), Positives = 165/392 (42%), Gaps = 50/392 (12%)
Query: 90 VACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHS 148
++ G H++ L S V +WG + GQLG G + P P + AL ++VS++ G H+
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 80
Query: 149 LAITSQG-KLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAG 207
+A + G ++Y+WGWG G+LG D+ P +KAL I G +H +A+T G
Sbjct: 81 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEG 140
Query: 208 RVWAFGSGIFGQLGTGSNTKHKVPIELYGLPE-PISMIATGYFHNLALGTSNRLYTWGSS 266
V ++G GQLG G VP ++ I M+A G H A+ LY WG
Sbjct: 141 EVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWG-- 198
Query: 267 PQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASEKNE 326
+ N L + + + P+ T +
Sbjct: 199 -------------------WGRYGNLGLGDRTDRLV-PERVTSTGGEKMSMVACGWRHTI 238
Query: 327 TAEYASFMQSFLSSA------DDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGR 380
+ Y+ + ++ S D H+ P ++ + + I QI G H+M L+ +G+
Sbjct: 239 SVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQISGGWRHTMALTSDGK 297
Query: 381 VYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVXXXXXXXXXXXXIKHITCGGDFS 440
+Y WG N GQ+G G+ + +P + + ++CG +
Sbjct: 298 LYGWGWNKFGQVGVGNNLDQCSPVQVRF----------------PDDQKVVQVSCGWRHT 341
Query: 441 LAMDESGKVWAWGTNVQGQVPRYIGELLFYKF 472
LA+ E V+AWG GQ+ IGE + F
Sbjct: 342 LAVTERNNVFAWGRGTNGQLG--IGESVDRNF 371
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 146/341 (42%), Gaps = 37/341 (10%)
Query: 356 SHVKAP---ILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVM 412
V AP +L I G HS+ L V +WGR DGQLG+G ++ +PT +S
Sbjct: 9 DEVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLS----- 63
Query: 413 TSSEVXXXXXXXXXXXXIKHITCGGDFSLAMDESG-KVWAWGTNVQGQVPRYIGELLFYK 471
I +TCG D ++A +SG +V++WG G++ LF
Sbjct: 64 -----------ALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTP 112
Query: 472 FNFDPV-GPLVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSLHIIPVLSIIQNSEP 530
+ G +K I D A+T + SW + L ++S
Sbjct: 113 LPIKALHGIRIKQIACGD---SHCLAVTMEGEVQSWGRNQNGQLGL------GDTEDSLV 163
Query: 531 SQSNVAWSLNDITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRI---- 586
Q A+ I ++ ++ W + + +++ R+
Sbjct: 164 PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG 223
Query: 587 --DVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSIS 643
+S VACG HT+ ++ SG +Y +G S+YGQLG G ++ P + AL+N + IS
Sbjct: 224 GEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQIS 283
Query: 644 AGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVK 684
G H++A+TS GKLY WGW GQ+G+ D P V+
Sbjct: 284 GGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVR 324
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 140/330 (42%), Gaps = 43/330 (13%)
Query: 137 RVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGG 196
+V+ ISAG HS+A+ S + +WG G GQLG ED P + AL+ I+S G
Sbjct: 17 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 76
Query: 197 HAHSIALTKAG-RVWAFGSGIFGQLGTGSNTKHKVPIELYGLPE-PISMIATGYFHNLAL 254
H++A +++G V+++G G FG+LG G+++ P+ + L I IA G H LA+
Sbjct: 77 ADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAV 136
Query: 255 GTSNRLYTWGSSPQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHL 314
+ +WG NQ L + + I +
Sbjct: 137 TMEGEVQSWG---------------------RNQNGQLGLGDTEDSLVPQKIQAFEGIRI 175
Query: 315 APSPSSASEKNETAEYAS-FMQSFLSSADDGMAHMSPTLVD---TSHVKAPILQICCGCH 370
+ A E + + + G+ + LV TS + + CG
Sbjct: 176 KMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWR 235
Query: 371 HSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVXXXXXXXXXXXXI 430
H++ +S G +YT+G + GQLG+G ++ P + +++S I
Sbjct: 236 HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLE---ALSNS-------------FI 279
Query: 431 KHITCGGDFSLAMDESGKVWAWGTNVQGQV 460
I+ G ++A+ GK++ WG N GQV
Sbjct: 280 SQISGGWRHTMALTSDGKLYGWGWNKFGQV 309
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 586 IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISA 644
I + +ACG H L +T G V +WG +Q GQLG+G + S P+ I A IR+ ++A
Sbjct: 121 IRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAA 180
Query: 645 GQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEISSLV 694
G H+ A+T G LY WGWG +G LGL D P+ V + E S+V
Sbjct: 181 GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMV 230
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 88/162 (54%), Gaps = 8/162 (4%)
Query: 51 VHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSG-VYAWG 109
++T+G S YG LG+G + P + N+ I S ++ G HT+ LTS G +Y WG
Sbjct: 246 LYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFI--SQISGGWRHTMALTSDGKLYGWG 302
Query: 110 SSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLG 169
+++GQ+G+G P + + +VV +S G H+LA+T + ++ WG G +GQLG
Sbjct: 303 WNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 362
Query: 170 LNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALT-KAGRVW 210
+ D + P++++AL + A G H S + +G+ W
Sbjct: 363 IGESVDRNFPKIIEALS---VDGASGQHIESSNIDPSSGKSW 401
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Query: 588 VSSVACGRLHTLVLTSSG--VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAG 645
+ SV CG HT+ + SG VY+WG +G+LG G P I AL IR+ I+ G
Sbjct: 70 IVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 129
Query: 646 QYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALE 687
H LA+T +G++ +WG +GQLGL ED PQ ++A E
Sbjct: 130 DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE 171
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Query: 588 VSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQ 646
+S ++ G HT+ LTS G +Y WG +++GQ+G+G P + + +VV +S G
Sbjct: 279 ISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGW 338
Query: 647 YHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKAL 686
H+LA+T + ++ WG G +GQLG+ D + P++++AL
Sbjct: 339 RHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 378
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 115/304 (37%), Gaps = 57/304 (18%)
Query: 362 ILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVXXXX 421
I QI CG H + ++ EG V +WGRN +GQLG G ++ P I
Sbjct: 123 IKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ-------------- 168
Query: 422 XXXXXXXXIKHITCGGDFSLAMDESGKVWAWGTNVQGQ----------VPRYIGELLFYK 471
IK + G + + A+ E G ++ WG G VP + K
Sbjct: 169 --AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEK 226
Query: 472 FNFDPVGPLVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSLHIIP-VLSIIQNSEP 530
+ G W S + + + + + D H+IP L + NS
Sbjct: 227 MSMVACG-------WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFI 279
Query: 531 SQSNVAWSLNDITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRI---- 586
SQ + W L+ GK W N + + Q +++
Sbjct: 280 SQISGGW--RHTMALTSDGK----------LYGWGWNKFGQVGVGNNLDQCSPVQVRFPD 327
Query: 587 --DVSSVACGRLHTLVLTS-SGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSIS 643
V V+CG HTL +T + V+AWG GQLGIG P+II AL+ V +
Sbjct: 328 DQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS----VDGA 383
Query: 644 AGQY 647
+GQ+
Sbjct: 384 SGQH 387
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 586 IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISA 644
I + VA G HT +T G +Y WG +YG LG+G P + + ++ ++
Sbjct: 173 IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC 232
Query: 645 GQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEISSLV 694
G H+++++ G LYT+GW +GQLG +ED P ++AL + S +
Sbjct: 233 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQI 282
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 591 VACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHS 649
++ G H++ L S V +WG + GQLG G + P P + AL ++VS++ G H+
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 80
Query: 650 LAITSQG-KLYTWGWGVHGQLGLNTVEDMSEPQLVKAL 686
+A + G ++Y+WGWG G+LG D+ P +KAL
Sbjct: 81 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKAL 118
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 638 RVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALE-HEISSLV 694
+V+ ISAG HS+A+ S + +WG G GQLG ED P + AL+ H+I S+
Sbjct: 17 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVT 74
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 114/198 (57%), Gaps = 4/198 (2%)
Query: 71 ISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRI 129
+S P + ++ I +V G H L L+S G VY+WG ++ G+LG G PR+
Sbjct: 93 VSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRV 152
Query: 130 IPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALE-HE 188
I +L I VV ++AG HS +T+ G LYTWG G +G+LG + ED +P+LV+AL+ H
Sbjct: 153 IESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHR 212
Query: 189 VI-ISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIELYGLPE-PISMIAT 246
V+ I+ G A ++ LT VW++G G +G+LG G + KVP+++ L + +
Sbjct: 213 VVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC 272
Query: 247 GYFHNLALGTSNRLYTWG 264
G ++AL S +YTWG
Sbjct: 273 GSQFSVALTKSGAVYTWG 290
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 131/252 (51%), Gaps = 9/252 (3%)
Query: 38 GGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHT 97
GG + +AL V++WG + G LG+G S P + R I+V VA G H+
Sbjct: 115 GGKHCLALSSEGEVYSWGEAEDGKLGHG-NRSPCDRPRVIESLRG--IEVVDVAAGGAHS 171
Query: 98 LVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSIS--AGQYHSLAITSQ 154
+T++G +Y WG +YG+LG + P+++ AL RVV I+ +G +L +T
Sbjct: 172 ACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDD 231
Query: 155 GKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGS 214
+++WG G +G+LG + P + +L ++ + G S+ALTK+G V+ +G
Sbjct: 232 DTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGK 291
Query: 215 GIFGQLGTGSNTKHKVPIELYGLP-EPISMIATGYFHNLALGTSNRLYTWGSSP--QVLR 271
G + +LG GS+ + P ++ GL + + IATG H + +YTWG + Q+
Sbjct: 292 GDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGD 351
Query: 272 SQSQAQKRARMM 283
+ A +R R++
Sbjct: 352 GTTNAIQRPRLV 363
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 3/223 (1%)
Query: 38 GGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHT 97
GG + + ++TWG YG LG+ + Q+ +P+ V + +++ + G T
Sbjct: 167 GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQL-KPKLVEALQGHRVVDIACGSGDAQT 225
Query: 98 LVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGK 156
L LT V++WG YG+LG G D P I +L + VV + G S+A+T G
Sbjct: 226 LCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGA 285
Query: 157 LYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSGI 216
+YTWG G + +LG + + + P+ V+ L+ + +I+ G H + T+ G V+ +G
Sbjct: 286 VYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDND 345
Query: 217 FGQLGTGSNTKHKVPIELYGLP-EPISMIATGYFHNLALGTSN 258
GQLG G+ + P + L + ++ +A G H LA TS
Sbjct: 346 EGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWSTSK 388
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 99/398 (24%), Positives = 168/398 (42%), Gaps = 52/398 (13%)
Query: 93 GRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAIT 152
GR + S +Y WG + GQLG + P ALA +R V + G+ A+T
Sbjct: 10 GRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 69
Query: 153 SQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVI--ISAKGGHAHSIALTKAGRVW 210
+ GKLY G+G G+LG+ E +S P L+++++H I ++ G H +AL+ G V+
Sbjct: 70 ADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVY 129
Query: 211 AFGSGIFGQLGTGSNT---KHKVPIELYGLPEPISMIATGYFHNLALGTSNRLYTWGSSP 267
++G G+LG G+ + + +V L G+ + +A G H+ + + LYTWG
Sbjct: 130 SWGEAEDGKLGHGNRSPCDRPRVIESLRGI--EVVDVAAGGAHSACVTAAGDLYTWGKGR 187
Query: 268 --QVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASEKN 325
++ S S+ Q + +++ A ++ + +T L +
Sbjct: 188 YGRLGHSDSEDQLKPKLV-------EALQGHRVVDIACGSGDAQT---LCLTDDDTVWSW 237
Query: 326 ETAEYASFMQSFLSSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWG 385
+Y + DG P +D S ++++ CG S+ L++ G VYTWG
Sbjct: 238 GDGDYGKLGR----GGSDGC--KVPMKID-SLTGLGVVKVECGSQFSVALTKSGAVYTWG 290
Query: 386 RNVDGQLGNGSRKEVHTPTAISINIVMTSSEVXXXXXXXXXXXXIKHITCGGDFSLAMDE 445
+ +LG+GS V P + + I G + E
Sbjct: 291 KGDYHRLGHGSDDHVRRPRQVQ----------------GLQGKKVIAIATGSLHCVCCTE 334
Query: 446 SGKVWAWGTNVQGQV----------PRYIGELLFYKFN 473
G+V+ WG N +GQ+ PR + L K N
Sbjct: 335 DGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVN 372
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 71/115 (61%), Gaps = 4/115 (3%)
Query: 574 IVRSHHQMLIMRIDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIP 632
++ S + I ++ V+S G H L L+S G VY+WG ++ G+LG G PR+I
Sbjct: 98 LLESIQHVFIKKVAVNS---GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIE 154
Query: 633 ALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALE 687
+L I VV ++AG HS +T+ G LYTWG G +G+LG + ED +P+LV+AL+
Sbjct: 155 SLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ 209
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 58/111 (52%), Gaps = 7/111 (6%)
Query: 584 MRID------VSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALAN 636
M+ID V V CG ++ LT SG VY WG Y +LG G D PR + L
Sbjct: 257 MKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQG 316
Query: 637 IRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALE 687
+V++I+ G H + T G++YTWG GQLG T + P+LV AL+
Sbjct: 317 KKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQ 367
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 588 VSSVACG--RLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISA 644
V +ACG TL LT V++WG YG+LG G D P I +L + VV +
Sbjct: 213 VVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC 272
Query: 645 GQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALE 687
G S+A+T G +YTWG G + +LG + + + P+ V+ L+
Sbjct: 273 GSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQ 315
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 586 IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSIS- 643
I+V VA G H+ +T++G +Y WG +YG+LG + P+++ AL RVV I+
Sbjct: 159 IEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIAC 218
Query: 644 -AGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKAL 686
+G +L +T +++WG G +G+LG + P + +L
Sbjct: 219 GSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL 262
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 571 DKDIVRSHHQMLIMRIDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPR 629
D + R + V ++A G LH + T G VY WG + GQLG G + PR
Sbjct: 302 DDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPR 361
Query: 630 IIPALANIRVVSISAGQYHSLA 651
++ AL +V ++ G H+LA
Sbjct: 362 LVAALQGKKVNRVACGSAHTLA 383
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%)
Query: 594 GRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAIT 653
GR + S +Y WG + GQLG + P ALA +R V + G+ A+T
Sbjct: 10 GRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 69
Query: 654 SQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEH 688
+ GKLY G+G G+LG+ E +S P L+++++H
Sbjct: 70 ADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQH 104
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 599 LVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALAN--IRVVSISAGQYHSLAITSQ 655
+T+ G +YA G G+LGIG + P ++ ++ + I+ V++++G H LA++S+
Sbjct: 66 FAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSE 125
Query: 656 GKLYTWGWGVHGQLGLNTVEDMSEPQLVKALE 687
G++Y+WG G+LG P+++++L
Sbjct: 126 GEVYSWGEAEDGKLGHGNRSPCDRPRVIESLR 157
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 100/378 (26%), Positives = 152/378 (40%), Gaps = 66/378 (17%)
Query: 105 VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGV 164
V G+ GQLG+G D R+ P V ISAG H+L +T G +Y++G
Sbjct: 45 VLVCGNGDVGQLGLGE-DILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCND 103
Query: 165 HGQLGLNTVEDMSE--PQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGS--GIFGQL 220
G LG +T ED SE P L+ + ISA G +HS L + GRV+A+GS G +
Sbjct: 104 EGALGRDTSEDGSESKPDLIDLPGKALCISA--GDSHSACLLEDGRVFAWGSFRDSHGNM 161
Query: 221 GTGSNTKHKVPIELYGLPEPISMIATGYFHNLALGTSNRLYTWGSSPQVLRSQSQAQKRA 280
G + + PI+L S IA+G H + L T+ +++T G + Q
Sbjct: 162 GLTIDGNKRTPIDLMEGTVCCS-IASGADHLVILTTAGKVFTVGCAEQ------------ 208
Query: 281 RMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSP-----SSASEKNETAEYASFM- 334
L S S + + L P+ + E Y +FM
Sbjct: 209 -----------GQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMR 257
Query: 335 ----QSFLSSADDGMAHMSPTLVDTSHVKAP-------ILQICCGCHHSMLLSREGRVYT 383
Q ++ + ++ P I I G HH+++L+ + +
Sbjct: 258 ESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSV 317
Query: 384 WGRNVDGQLGNGSRKE-VHTPTAISINIVMTSSEVXXXXXXXXXXXXIKHITCGGDFSLA 442
GR G+LG G K+ V PT IV +E I + CG S A
Sbjct: 318 VGRPEYGRLGLGDVKDVVEKPT-----IVKKLTE------------KIVSVGCGEVCSYA 360
Query: 443 MDESGKVWAWGTNVQGQV 460
+ GK+++WG+ V Q+
Sbjct: 361 VTIDGKLYSWGSGVNNQL 378
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 94/393 (23%), Positives = 153/393 (38%), Gaps = 58/393 (14%)
Query: 41 YHVALVRNR----RVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLH 96
+H+ L + R V G+ G LG G + + PV D ++ G +H
Sbjct: 31 FHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP----DAVDISAGGMH 86
Query: 97 TLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANI--RVVSISAGQYHSLAITS 153
LVLT SG +Y++G + G LG + + P L ++ + + ISAG HS +
Sbjct: 87 NLVLTKSGDIYSFGCNDEGALGRDTSEDGSESK--PDLIDLPGKALCISAGDSHSACLLE 144
Query: 154 QGKLYTWG--WGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWA 211
G+++ WG HG +GL + P + +E V S G H + LT AG+V+
Sbjct: 145 DGRVFAWGSFRDSHGNMGLTIDGNKRTP--IDLMEGTVCCSIASGADHLVILTTAGKVFT 202
Query: 212 FGSGIFGQLG-------TGSNTKHKVPIELYGLPEPISMIATGYFHNLALGTSNRLYTWG 264
G GQLG +G + K L P +I T A+ W
Sbjct: 203 VGCAEQGQLGRLSERSISGEGRRGK-----RDLLRPTQLIITRAKPFEAI--------WA 249
Query: 265 SSPQVLRSQSQAQ-------KRARMMCYSNQVKNAALAEFSSEVTS----PDANNETKIH 313
++ +SQ Q + + + + K AL +E+ + T I
Sbjct: 250 TNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVIL 309
Query: 314 LAPSPSSASEKNETAEYASFMQSFLSSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSM 373
S + E L D + PT+V + I+ + CG S
Sbjct: 310 TTDLKCSVVGRPEYGRLG------LGDVKDVVE--KPTIV--KKLTEKIVSVGCGEVCSY 359
Query: 374 LLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAI 406
++ +G++Y+WG V+ QLG G + P +
Sbjct: 360 AVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVV 392
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
Query: 86 DVSSVACGRLHTLVLTSS-GVYAWGSSQYGQLGIGLI-DQSPHPRIIPALANIRVVSISA 143
D+ +A G+ HT++LT+ G +YG+LG+G + D P I+ L ++VS+
Sbjct: 295 DIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGC 353
Query: 144 GQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLV--KALEHEVIISAKGGHAHSI 201
G+ S A+T GKLY+WG GV+ QLG+ +D EP +V K + + ++ A GG H+I
Sbjct: 354 GEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAI 413
Query: 202 ALTKAGR 208
L KA +
Sbjct: 414 FLVKADK 420
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 143/351 (40%), Gaps = 74/351 (21%)
Query: 339 SSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWG--RNVDGQLGNGS 396
+++DG + P L+D + L I G HS L +GRV+ WG R+ G +G
Sbjct: 110 DTSEDG-SESKPDLID---LPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTI 165
Query: 397 RKEVHTPTAISINIVMTSSEVXXXXXXXXXXXXIKHITCGGDFSLAMDESGKVWAWGTNV 456
TP + V S I G D + + +GKV+ G
Sbjct: 166 DGNKRTPIDLMEGTVCCS------------------IASGADHLVILTTAGKVFTVGCAE 207
Query: 457 QGQVPRYIGELLFYKFNFDPVGPLVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSL 516
QGQ+ R + E L++ +K AI W A+ C+
Sbjct: 208 QGQLGR-LSERSISGEGRRGKRDLLRPTQLIITRAKPFEAI--------W---ATNYCTF 255
Query: 517 HIIPVLSIIQNSEPSQSNVAWS--LNDITTLSIQGKNVNCENLTPCCLCWWENTLCDKDI 574
SQ+ V W+ LN+ L+ + K LTP
Sbjct: 256 M-----------RESQTQVIWATGLNNFKQLAHETKGKEFA-LTP--------------- 288
Query: 575 VRSHHQMLIMRIDVSSVACGRLHTLVLTSS-GVYAWGSSQYGQLGIGLI-DQSPHPRIIP 632
+++ + D+ +A G+ HT++LT+ G +YG+LG+G + D P I+
Sbjct: 289 IKTELK------DIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVK 342
Query: 633 ALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLV 683
L ++VS+ G+ S A+T GKLY+WG GV+ QLG+ +D EP +V
Sbjct: 343 KLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVV 392
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 38 GGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHT 97
GG +++ L ++ ++++G + GALG T SE +P + K ++ G H+
Sbjct: 83 GGMHNLVLTKSGDIYSFGCNDEGALGR-DTSEDGSESKPDLIDLPGK--ALCISAGDSHS 139
Query: 98 LVLTSSG-VYAWGS--SQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQ 154
L G V+AWGS +G +G+ + P I + SI++G H + +T+
Sbjct: 140 ACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTP--IDLMEGTVCCSIASGADHLVILTTA 197
Query: 155 GKLYTWGWGVHGQLG 169
GK++T G GQLG
Sbjct: 198 GKVFTVGCAEQGQLG 212
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 606 VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGV 665
V G+ GQLG+G D R+ P V ISAG H+L +T G +Y++G
Sbjct: 45 VLVCGNGDVGQLGLGE-DILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCND 103
Query: 666 HGQLGLNTVEDMSE--PQLV 683
G LG +T ED SE P L+
Sbjct: 104 EGALGRDTSEDGSESKPDLI 123
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 587 DVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANI--RVVSIS 643
D ++ G +H LVLT SG +Y++G + G LG + + P L ++ + + IS
Sbjct: 76 DAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESK--PDLIDLPGKALCIS 133
Query: 644 AGQYHSLAITSQGKLYTWG--WGVHGQLGL 671
AG HS + G+++ WG HG +GL
Sbjct: 134 AGDSHSACLLEDGRVFAWGSFRDSHGNMGL 163
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 102/400 (25%), Positives = 165/400 (41%), Gaps = 65/400 (16%)
Query: 81 RNNKIDVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANI--RV 138
++ K+ VS + LVLT G GQLG+G ++ R PAL +I V
Sbjct: 11 KSKKVKVSHRSHSTEPGLVLT------LGQGDVGQLGLG---ENVMERKKPALVSIPEDV 61
Query: 139 VSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHA 198
V AG H++ ++ G++Y++G G LG +T + SE K E ++ G +
Sbjct: 62 VQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDS 121
Query: 199 HSIALTKAGRVWAFGS-----GIFGQLGTGSNTKHKVPIELYGLPEPISMIATGYFHNLA 253
H+ ALT GRV+ +GS G+ G L K VP+++ L P+ +A+G H +
Sbjct: 122 HTAALTDDGRVFLWGSFRDNNGVIGLLEP--MKKSMVPVQVQ-LDVPVVKVASGNDHLVM 178
Query: 254 LGTSNRLYTWGSS--------PQVLRSQSQAQKRARMM---CYSNQVKNAALAEFSSEVT 302
L LYT G P++ ++ Q R++ C + + + V
Sbjct: 179 LTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGS-----RGHVR 233
Query: 303 SPDANNETKIHLAPSPSSASEKNETAEYASFMQSF--LSSADDGMAHMSPTLVDTSHVKA 360
DA A S +E Y + ++ L + + L +
Sbjct: 234 FQDAFCGAYFTFAIS-------HEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTK 286
Query: 361 PILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHT-PTAISINIVMTSSEVXX 419
+ G HH++ + EG+ Y+ GR G+LG G E + PT IS ++S
Sbjct: 287 SWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSS----- 341
Query: 420 XXXXXXXXXXIKHITCGGDFSLAMDESGKVWAW--GTNVQ 457
+ CG A+ + G+V+AW GTN Q
Sbjct: 342 -------------VACGASVGYAVTKDGRVFAWGMGTNYQ 368
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 77/149 (51%), Gaps = 6/149 (4%)
Query: 92 CGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRV--VSISAGQYHS 148
CG T ++ G VY +G S Y QLG + P+ + + N V S GQ+H+
Sbjct: 239 CGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHT 298
Query: 149 LAITSQGKLYTWGWGVHGQLGLNT-VEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAG 207
+ + S+GK Y+ G +G+LGL E+ S P L+ L + S G + A+TK G
Sbjct: 299 VCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKDG 356
Query: 208 RVWAFGSGIFGQLGTGSNTKHKVPIELYG 236
RV+A+G G QLGTG + P+E+ G
Sbjct: 357 RVFAWGMGTNYQLGTGQDEDAWSPVEMMG 385
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 93/382 (24%), Positives = 159/382 (41%), Gaps = 53/382 (13%)
Query: 51 VHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSG-VYAWG 109
V T G G LG G + + +P V + DV G +HT+ L+ SG VY++G
Sbjct: 29 VLTLGQGDVGQLGLGENVMERKKPALV----SIPEDVVQAEAGGMHTVCLSKSGQVYSFG 84
Query: 110 SSQYGQLGIGLIDQSPH-PRIIPALANI--RVVSISAGQYHSLAITSQGKLYTWG--WGV 164
+ G LG D S ++P + +VV +SAG H+ A+T G+++ WG
Sbjct: 85 CNDEGALGR---DTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDN 141
Query: 165 HGQLGLNTVEDMSEPQLVKALEHEV-IISAKGGHAHSIALTKAGRVWAFGSGIFGQLGT- 222
+G +GL +E M + + ++ +V ++ G+ H + LT G ++ G G GQLG
Sbjct: 142 NGVIGL--LEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRV 199
Query: 223 ---GSNTKHKVPIELYGLPEPISMIATG--------------YFHNLALGTSNRLYTWGS 265
+N + +E +P+ + + + G YF A+ +Y +G
Sbjct: 200 PELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYF-TFAISHEGHVYGFG- 257
Query: 266 SPQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASEKN 325
L + Q C+ Q L F + S + + H S +
Sbjct: 258 ----LSNYHQLGTPGTESCFIPQ----NLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYS 309
Query: 326 -ETAEYASFMQSFLSSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTW 384
AEY L + PTL+ S + A + + CG ++++GRV+ W
Sbjct: 310 LGRAEYGR-----LGLGEGAEEKSIPTLI--SRLPA-VSSVACGASVGYAVTKDGRVFAW 361
Query: 385 GRNVDGQLGNGSRKEVHTPTAI 406
G + QLG G ++ +P +
Sbjct: 362 GMGTNYQLGTGQDEDAWSPVEM 383
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 109/251 (43%), Gaps = 26/251 (10%)
Query: 38 GGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHT 97
GG + V L ++ +V+++G + GALG T + SE P K V V+ G HT
Sbjct: 67 GGMHTVCLSKSGQVYSFGCNDEGALGR-DTSVEGSEMVPGKVELQEK--VVQVSAGDSHT 123
Query: 98 LVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRI-IPALANIRVVSISAGQYHSLAITSQG 155
LT G V+ WGS + IGL++ + + ++ VV +++G H + +T+ G
Sbjct: 124 AALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADG 183
Query: 156 KLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHE-----VIISAKGGHAH----------- 199
LYT G G GQLG E + + LE V++ ++G H
Sbjct: 184 DLYTLGCGEQGQLG-RVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAY 242
Query: 200 -SIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIELYGLPEPISM---IATGYFHNLALG 255
+ A++ G V+ FG + QLGT +P L + G H + +
Sbjct: 243 FTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMD 302
Query: 256 TSNRLYTWGSS 266
+ + Y+ G +
Sbjct: 303 SEGKAYSLGRA 313
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 106/249 (42%), Gaps = 27/249 (10%)
Query: 38 GGFYHVALVRNRRVHTWGS--SSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRL 95
G + AL + RV WGS + G +G M + P V + V VA G
Sbjct: 119 GDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQL----DVPVVKVASGND 174
Query: 96 HTLVLTSSG-VYAWGSSQYGQLGIG----------------LIDQSPHPRIIPALANIRV 138
H ++LT+ G +Y G + GQLG L+ + + + ++R
Sbjct: 175 HLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRF 234
Query: 139 VSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVI--ISAKGG 196
G Y + AI+ +G +Y +G + QLG E PQ + + ++ + GG
Sbjct: 235 QDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGG 294
Query: 197 HAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHK-VPIELYGLPEPISMIATGYFHNLALG 255
H++ + G+ ++ G +G+LG G + K +P + LP +S +A G A+
Sbjct: 295 QHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP-AVSSVACGASVGYAVT 353
Query: 256 TSNRLYTWG 264
R++ WG
Sbjct: 354 KDGRVFAWG 362
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/354 (21%), Positives = 132/354 (37%), Gaps = 62/354 (17%)
Query: 338 LSSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSR 397
L ++ M P LV + ++Q G H++ LS+ G+VY++G N +G LG +
Sbjct: 40 LGLGENVMERKKPALVS---IPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTS 96
Query: 398 KEVHTPTAISINIVMTSSEVXXXXXXXXXXXXIKHITCGGDFSLAMDESGKVWAWGTNVQ 457
E + + + ++ G + A+ + G+V+ WG+
Sbjct: 97 VEGSEMVPGKVEL----------------QEKVVQVSAGDSHTAALTDDGRVFLWGSFRD 140
Query: 458 GQVPRYIGELLFYKFNFDPVGPLVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSLH 517
IG L K + PV + +P +S + + + + L L
Sbjct: 141 NN--GVIGLLEPMKKSMVPVQVQLD-VPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLG 197
Query: 518 IIPVLSIIQNSEPSQSNVAWSLNDITTLSIQGKNVNCENL-TPCCLCWWENTLCDKDIVR 576
+P L + +G E L P C+ + R
Sbjct: 198 RVPEL----------------------FANRGGRQGLERLLVPKCV------MLKSRGSR 229
Query: 577 SHHQMLIMRIDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALA 635
H + CG T ++ G VY +G S Y QLG + P+ + +
Sbjct: 230 GH-------VRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFK 282
Query: 636 NIRV--VSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNT-VEDMSEPQLVKAL 686
N V S GQ+H++ + S+GK Y+ G +G+LGL E+ S P L+ L
Sbjct: 283 NSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL 336
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 594 GRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANI--RVVSISAGQYHSL 650
G+ HT+ + S G Y+ G ++YG+LG+G + + IP L + V S++ G
Sbjct: 294 GQHHTVCMDSEGKAYSLGRAEYGRLGLG---EGAEEKSIPTLISRLPAVSSVACGASVGY 350
Query: 651 AITSQGKLYTWGWGVHGQLGLNTVEDMSEP--QLVKALEHEI 690
A+T G+++ WG G + QLG ED P + K LE+ +
Sbjct: 351 AVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRV 392
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 17/128 (13%)
Query: 584 MRIDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIG----------------LIDQSP 626
+ + V VA G H ++LT+ G +Y G + GQLG L+ +
Sbjct: 162 LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCV 221
Query: 627 HPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKAL 686
+ + ++R G Y + AI+ +G +Y +G + QLG E PQ + +
Sbjct: 222 MLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSF 281
Query: 687 EHEISSLV 694
++ S V
Sbjct: 282 KNSTKSWV 289
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 96/376 (25%), Positives = 155/376 (41%), Gaps = 59/376 (15%)
Query: 105 VYAWGSSQYGQLGIGLIDQSPHPRIIPALANI--RVVSISAGQYHSLAITSQGKLYTWGW 162
V G GQLG+G ++ R PAL +I VV AG H++ ++ G++Y++G
Sbjct: 18 VLTLGQGDVGQLGLG---ENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGC 74
Query: 163 GVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGS-----GIF 217
G LG +T + SE K E ++ G +H+ ALT GRV+ +GS G+
Sbjct: 75 NDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVI 134
Query: 218 GQLGTGSNTKHKVPIELYGLPEPISMIATGYFHNLALGTSNRLYTWGSS--------PQV 269
G L K VP+++ L P+ +A+G H + L LYT G P++
Sbjct: 135 GLL--EPMKKSMVPVQVQ-LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPEL 191
Query: 270 LRSQSQAQKRARMM---CYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASEKNE 326
++ Q R++ C + + + V DA A S +E
Sbjct: 192 FANRGGRQGLERLLVPKCVMLKSRGS-----RGHVRFQDAFCGAYFTFAIS-------HE 239
Query: 327 TAEYASFMQSF--LSSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTW 384
Y + ++ L + + L + + G HH++ + EG+ Y+
Sbjct: 240 GHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSL 299
Query: 385 GRNVDGQLGNGSRKEVHT-PTAISINIVMTSSEVXXXXXXXXXXXXIKHITCGGDFSLAM 443
GR G+LG G E + PT IS ++S + CG A+
Sbjct: 300 GRAEYGRLGLGEGAEEKSIPTLISRLPAVSS------------------VACGASVGYAV 341
Query: 444 DESGKVWAW--GTNVQ 457
+ G+V+AW GTN Q
Sbjct: 342 TKDGRVFAWGMGTNYQ 357
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 77/149 (51%), Gaps = 6/149 (4%)
Query: 92 CGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRV--VSISAGQYHS 148
CG T ++ G VY +G S Y QLG + P+ + + N V S GQ+H+
Sbjct: 228 CGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHT 287
Query: 149 LAITSQGKLYTWGWGVHGQLGLNT-VEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAG 207
+ + S+GK Y+ G +G+LGL E+ S P L+ L + S G + A+TK G
Sbjct: 288 VCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKDG 345
Query: 208 RVWAFGSGIFGQLGTGSNTKHKVPIELYG 236
RV+A+G G QLGTG + P+E+ G
Sbjct: 346 RVFAWGMGTNYQLGTGQDEDAWSPVEMMG 374
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 106/249 (42%), Gaps = 27/249 (10%)
Query: 38 GGFYHVALVRNRRVHTWGS--SSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRL 95
G + AL + RV WGS + G +G M + P V + V VA G
Sbjct: 108 GDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQL----DVPVVKVASGND 163
Query: 96 HTLVLTSSG-VYAWGSSQYGQLGIG----------------LIDQSPHPRIIPALANIRV 138
H ++LT+ G +Y G + GQLG L+ + + + ++R
Sbjct: 164 HLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRF 223
Query: 139 VSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVI--ISAKGG 196
G Y + AI+ +G +Y +G + QLG E PQ + + ++ + GG
Sbjct: 224 QDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGG 283
Query: 197 HAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHK-VPIELYGLPEPISMIATGYFHNLALG 255
H++ + G+ ++ G +G+LG G + K +P + LP +S +A G A+
Sbjct: 284 QHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP-AVSSVACGASVGYAVT 342
Query: 256 TSNRLYTWG 264
R++ WG
Sbjct: 343 KDGRVFAWG 351
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 109/251 (43%), Gaps = 26/251 (10%)
Query: 38 GGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHT 97
GG + V L ++ +V+++G + GALG T + SE P K V V+ G HT
Sbjct: 56 GGMHTVCLSKSGQVYSFGCNDEGALGR-DTSVEGSEMVPGKVELQEK--VVQVSAGDSHT 112
Query: 98 LVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRI-IPALANIRVVSISAGQYHSLAITSQG 155
LT G V+ WGS + IGL++ + + ++ VV +++G H + +T+ G
Sbjct: 113 AALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADG 172
Query: 156 KLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHE-----VIISAKGGHAH----------- 199
LYT G G GQLG E + + LE V++ ++G H
Sbjct: 173 DLYTLGCGEQGQLG-RVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAY 231
Query: 200 -SIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIELYGLPEPISM---IATGYFHNLALG 255
+ A++ G V+ FG + QLGT +P L + G H + +
Sbjct: 232 FTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMD 291
Query: 256 TSNRLYTWGSS 266
+ + Y+ G +
Sbjct: 292 SEGKAYSLGRA 302
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 96/461 (20%), Positives = 171/461 (37%), Gaps = 78/461 (16%)
Query: 198 AHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIELYGLPEPISMIATGYFHNLALGTS 257
+H T+ G V G G GQLG G N + L +PE + G H + L S
Sbjct: 7 SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKS 66
Query: 258 NRLYTWGSSPQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPS 317
++Y++G + + + + + + M+ L E +V++ D++
Sbjct: 67 GQVYSFGCNDEGALGRDTSVEGSEMV-----PGKVELQEKVVQVSAGDSHT--------- 112
Query: 318 PSSASEKNETAEYASFMQS--FLSSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLL 375
++ ++ + SF + + + M P V + P++++ G H ++L
Sbjct: 113 -AALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV---QLDVPVVKVASGNDHLVML 168
Query: 376 SREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVXXXXXXXXXXXXIKHITC 435
+ +G +YT G GQLG + + ++ V + C
Sbjct: 169 TADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFC 228
Query: 436 GGDFSLAMDESGKVWAWGTNVQGQVPRYIGELLFYKFNFDPVGPLVKWIPWFDDSSKKIN 495
G F+ A+ G V+ +G + N+ +G P + N
Sbjct: 229 GAYFTFAISHEGHVYGFGLS-----------------NYHQLG-----TPGTESCFIPQN 266
Query: 496 AITFQSSSASWLLVASYDCSLHIIPVLSIIQNSEPSQSNVAWSLNDITTLSIQGKNVNCE 555
+F++S+ SW+ + H ++ +SE A+SL + E
Sbjct: 267 LTSFKNSTKSWV---GFSGGQH----HTVCMDSEGK----AYSLGRAEYGRLGLGEGAEE 315
Query: 556 NLTPCCLCWWENTLCDKDIVRSHHQMLIMRID-VSSVACGRLHTLVLTSSG-VYAWGSSQ 613
P LI R+ VSSVACG +T G V+AWG
Sbjct: 316 KSIP---------------------TLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGT 354
Query: 614 YGQLGIGLIDQ--SPHPRIIPALANIRVVSISAGQYHSLAI 652
QLG G + SP + L N V+S+S+G H++ +
Sbjct: 355 NYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLL 395
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 77/354 (21%), Positives = 132/354 (37%), Gaps = 62/354 (17%)
Query: 338 LSSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSR 397
L ++ M P LV + ++Q G H++ LS+ G+VY++G N +G LG +
Sbjct: 29 LGLGENVMERKKPALVS---IPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTS 85
Query: 398 KEVHTPTAISINIVMTSSEVXXXXXXXXXXXXIKHITCGGDFSLAMDESGKVWAWGTNVQ 457
E + + + ++ G + A+ + G+V+ WG+
Sbjct: 86 VEGSEMVPGKVEL----------------QEKVVQVSAGDSHTAALTDDGRVFLWGSFRD 129
Query: 458 GQVPRYIGELLFYKFNFDPVGPLVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSLH 517
IG L K + PV + +P +S + + + + L L
Sbjct: 130 NN--GVIGLLEPMKKSMVPVQVQLD-VPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLG 186
Query: 518 IIPVLSIIQNSEPSQSNVAWSLNDITTLSIQGKNVNCENL-TPCCLCWWENTLCDKDIVR 576
+P L + +G E L P C+ + R
Sbjct: 187 RVPEL----------------------FANRGGRQGLERLLVPKCV------MLKSRGSR 218
Query: 577 SHHQMLIMRIDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALA 635
H + CG T ++ G VY +G S Y QLG + P+ + +
Sbjct: 219 GH-------VRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFK 271
Query: 636 NIRV--VSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNT-VEDMSEPQLVKAL 686
N V S GQ+H++ + S+GK Y+ G +G+LGL E+ S P L+ L
Sbjct: 272 NSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL 325
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 152 TSQGKLYTWGWGVHGQLGL-NTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVW 210
T G + T G G GQLGL V + +P LV E ++ A+ G H++ L+K+G+V+
Sbjct: 13 TEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED--VVQAEAGGMHTVCLSKSGQVY 70
Query: 211 AFGSGIFGQLGTGSNTK--HKVPIELYGLPEPISMIATGYFHNLALGTSNRLYTWGS 265
+FG G LG ++ + VP ++ L E + ++ G H AL R++ WGS
Sbjct: 71 SFGCNDEGALGRDTSVEGSEMVPGKVE-LQEKVVQVSAGDSHTAALTDDGRVFLWGS 126
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 594 GRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANI--RVVSISAGQYHSL 650
G+ HT+ + S G Y+ G ++YG+LG+G + + IP L + V S++ G
Sbjct: 283 GQHHTVCMDSEGKAYSLGRAEYGRLGLG---EGAEEKSIPTLISRLPAVSSVACGASVGY 339
Query: 651 AITSQGKLYTWGWGVHGQLGLNTVEDMSEP--QLVKALEHEI 690
A+T G+++ WG G + QLG ED P + K LE+ +
Sbjct: 340 AVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRV 381
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 17/128 (13%)
Query: 584 MRIDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIG----------------LIDQSP 626
+ + V VA G H ++LT+ G +Y G + GQLG L+ +
Sbjct: 151 LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCV 210
Query: 627 HPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKAL 686
+ + ++R G Y + AI+ +G +Y +G + QLG E PQ + +
Sbjct: 211 MLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSF 270
Query: 687 EHEISSLV 694
++ S V
Sbjct: 271 KNSTKSWV 278
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 104/451 (23%), Positives = 177/451 (39%), Gaps = 71/451 (15%)
Query: 40 FYHVAL-VRNRRVHTWGSSSYGALGNGPTMS--QISEPEPVVWFRNNKIDVSSVACGRLH 96
+ H+ L V+ + WG+ S LG GP ++ P + ++ + S A G +H
Sbjct: 19 YKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMH 78
Query: 97 TLVLTS-SGVYAWGSSQYGQLG-------------------------IGLIDQSPH--PR 128
TL L S V++WG + G LG + ++ +P PR
Sbjct: 79 TLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPR 138
Query: 129 -IIPALAN-IRVVSISAGQYHSLAITSQGKLYTWGWGV--HGQLGL--NTVEDMSEPQLV 182
P LA +VV ++A S A+ S G++Y WG G LG + ++ P V
Sbjct: 139 ESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKV 198
Query: 183 KALEHEVIISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPI---ELYGLPE 239
I+ G H + L + G V+A+G+G QLG + ++ +GL
Sbjct: 199 PTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRH 258
Query: 240 PISMIATGYFHNLALGTSNRLYTWGSS-------PQVLRSQSQAQKRARMMCYSNQV-KN 291
+ IA+G H AL N+L +WG + + + + K R+ N V ++
Sbjct: 259 -VKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRS 317
Query: 292 AALAEFSSEVTSPDANNETKIHLAPSPSSASEKNETAEYASFMQSFLSSADDGMAHMSPT 351
A E S + S D + + L + N + + G A P
Sbjct: 318 IAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDN--------LPEYTYKDVHGKARAVPL 369
Query: 352 LVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIV 411
++V + G HHS+ +++ G Y+WG +G G ++ T + I
Sbjct: 370 PTKLNNVPK-FKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFED---DTEVPTRIK 425
Query: 412 MTSSEVXXXXXXXXXXXXIKHITCGGDFSLA 442
T+++ I + CGG FS++
Sbjct: 426 NTATQ----------DHNIILVGCGGQFSVS 446
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 110/267 (41%), Gaps = 43/267 (16%)
Query: 38 GGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQ------------------ISEPE---- 75
GG + +AL V +WG + GALG + ++ ++E E
Sbjct: 75 GGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPA 134
Query: 76 --PVVWF----RNNKIDVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGL----IDQSP 125
P F +K+ V A + + ++ VYAWG+ + + +G I
Sbjct: 135 KIPRESFPPLAEGHKV-VQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQK 193
Query: 126 HPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVK-- 183
P +P + +V ++ G+ H L + +G ++ WG G QLG +E L
Sbjct: 194 TPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRP 253
Query: 184 -ALEHEVIISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPI---ELYGLPE 239
L H I++ G H ALTK ++ ++G FGQ G + + + + LP+
Sbjct: 254 FGLRHVKYIAS--GENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPD 311
Query: 240 PISM--IATGYFHNLALGTSNRLYTWG 264
+ + IA G H+L L LY+ G
Sbjct: 312 NVVIRSIAAGEHHSLILSQDGDLYSCG 338
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 123/327 (37%), Gaps = 55/327 (16%)
Query: 362 ILQICCGCHHSMLLSREGRVYTWG--RNVDGQLGNGSRKEVHTPTAISINIVMTSSEVXX 419
++Q+ + S L G VY WG R +G LG K I I T +V
Sbjct: 150 VVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDK---------IKIQKTPWKVPT 200
Query: 420 XXXXXXXXXXIKHITCGGDFSLAMDESGKVWAWGTNVQGQVPRYIGELLFYKFNFDPVGP 479
I + G D L +DE G V+AWG Q Q+ R + E K DP
Sbjct: 201 FSKYN-----IVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLK-TLDPRPF 254
Query: 480 LVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSLHIIPVLSIIQNSEPSQSNVAWSL 539
++ + + A+T + SW L ++ Q V+ +
Sbjct: 255 GLRHVKYIASGENHCFALTKDNKLVSWGL-------------------NQFGQCGVSEDV 295
Query: 540 NDITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRIDVSSVACGRLHTL 599
D ++ P L +N + + I H LI+ D +CGRL
Sbjct: 296 EDGALVT-----------KPKRLALPDNVVI-RSIAAGEHHSLILSQDGDLYSCGRLDMF 343
Query: 600 VLTSSGVYAWGSSQYGQLGI-GLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKL 658
+ G+ +Y + G P P + + + S++AG +HS+A+ G
Sbjct: 344 EV---GIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFK--SVAAGSHHSVAVAQNGIA 398
Query: 659 YTWGWGVHGQLGLNTVEDMSE-PQLVK 684
Y+WG+G +GL ED +E P +K
Sbjct: 399 YSWGFGETYAVGLGPFEDDTEVPTRIK 425
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 92/217 (42%), Gaps = 32/217 (14%)
Query: 87 VSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGI------GLIDQSPHPRIIPALANIRVV 139
V +A G H LT + +WG +Q+GQ G+ G + P +P N+ +
Sbjct: 259 VKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPD--NVVIR 316
Query: 140 SISAGQYHSLAITSQGKLYTWGWGVHGQLGLN-------TVEDM-----SEPQLVKALEH 187
SI+AG++HSL ++ G LY+ G ++G+ T +D+ + P K
Sbjct: 317 SIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNV 376
Query: 188 EVIISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIE-LYGLPEPISMIAT 246
S G HS+A+ + G +++G G +G G P E +P I AT
Sbjct: 377 PKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLG-------PFEDDTEVPTRIKNTAT 429
Query: 247 GYFHNLALGTSNRLYTWGSSPQVLRSQSQAQKRARMM 283
+ + +G + G V S A+KRA M
Sbjct: 430 QDHNIILVGCGGQFSVSGG---VKLSDEDAEKRADEM 463
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 113/293 (38%), Gaps = 39/293 (13%)
Query: 190 IISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTG---SNTKHKVPIELYGLPEPISMI-- 244
II+A+ + H + ++ +G+G +LG G N + K P LP + I
Sbjct: 12 IINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIIS 71
Query: 245 -ATGYFHNLALGTSNRLYTWGSSP--QVLRSQSQAQKRARMMCYS----------NQVKN 291
A G H LAL + +++WG + + R S A+++ + M N++++
Sbjct: 72 FAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELES 131
Query: 292 AALAEFSSEVTSPDANNETKIHLAPSPSSAS---EKNETAEYASFM--QSFLSSADDGMA 346
A+ E P A + LA + + + E + +F + L D +
Sbjct: 132 TP-AKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIK 190
Query: 347 HMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAI 406
+ K I+Q+ G H + L EG V+ WG QLG RK
Sbjct: 191 IQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLG---RK-------- 239
Query: 407 SINIVMTSSEVXXXXXXXXXXXXIKHITCGGDFSLAMDESGKVWAWGTNVQGQ 459
VM + +K+I G + A+ + K+ +WG N GQ
Sbjct: 240 ----VMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQ 288
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 606 VYAWGSSQYGQLGIGLIDQSPH---PRIIPALA--NIRVVSISAGQYHSLAITSQGKLYT 660
++ WG+ +LG+G + ++ PR+ P L +++S + G H+LA+ + +++
Sbjct: 31 IFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWS 90
Query: 661 WGWGVHGQLGLNT 673
WG G LG +T
Sbjct: 91 WGCNDVGALGRDT 103
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 17/85 (20%)
Query: 381 VYTWGRNVDGQLGNG---SRKEVHTPTAISINIVMTSSEVXXXXXXXXXXXXIKHITCGG 437
++ WG +LG G KEV P +N + E I GG
Sbjct: 31 IFCWGTGSMCELGLGPLAKNKEVKRP---RLNPFLPRDEAK-----------IISFAVGG 76
Query: 438 DFSLAMDESGKVWAWGTNVQGQVPR 462
+LA+DE VW+WG N G + R
Sbjct: 77 MHTLALDEESNVWSWGCNDVGALGR 101
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 114/289 (39%), Gaps = 58/289 (20%)
Query: 38 GGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHT 97
GG++H ++ +V WG++ G L TM ++ V ++A G H+
Sbjct: 31 GGYFHGLALKGGKVLGWGANLNGQL----TMPAATQS-----------GVDAIAAGNYHS 75
Query: 98 LVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKL 157
L L V AWG ++ GQ +PA A V +I+AG + S A+ GK+
Sbjct: 76 LALKDGEVIAWGGNEDGQ------------TTVPAEARSGVDAIAAGAWASYAL-KDGKV 122
Query: 158 YTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSGIF 217
WG D S+ Q E + ++A G ++ K G V A+G F
Sbjct: 123 IAWG-------------DDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYF 169
Query: 218 GQLGTGSNTKHKVPIELYGLPEPISMIATGYFHNLALGTSNRLYTWGS-----SPQVLRS 272
GQ VP E + +A G FH+LAL ++ WG + +
Sbjct: 170 GQT--------TVPAE---AQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTEA 217
Query: 273 QSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSA 321
S A YS +KN + + S T+P + + P++A
Sbjct: 218 LSGVSAIASGEWYSLALKNGKVIAWGSSRTAPSSVQSGVSSIEAGPNAA 266
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 13/81 (16%)
Query: 588 VSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQY 647
V ++A G H L L V WG++ GQL +PA V +I+AG Y
Sbjct: 26 VDAIAGGYFHGLALKGGKVLGWGANLNGQL------------TMPAATQSGVDAIAAGNY 73
Query: 648 HSLAITSQGKLYTWGWGVHGQ 668
HSLA+ G++ WG GQ
Sbjct: 74 HSLAL-KDGEVIAWGGNEDGQ 93
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 115/310 (37%), Gaps = 89/310 (28%)
Query: 356 SHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSS 415
+ ++ + I G H + L + G+V WG N++GQL P A
Sbjct: 20 AEAQSGVDAIAGGYFHGLAL-KGGKVLGWGANLNGQL--------TMPAATQ-------- 62
Query: 416 EVXXXXXXXXXXXXIKHITCGGDFSLAMDESGKVWAWGTNVQGQVPRYIGELLFYKFNFD 475
+ I G SLA+ + G+V AWG N GQ
Sbjct: 63 ------------SGVDAIAAGNYHSLALKD-GEVIAWGGNEDGQTT-------------- 95
Query: 476 PVGPLVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSLHIIPVLSIIQNSEPSQSNV 535
+P ++ ++AI ++ +W A D + S Q + P+++
Sbjct: 96 --------VP--AEARSGVDAI----AAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQS 141
Query: 536 AWSLND---ITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRIDVSSVA 592
+ D T L+++ V + W +N + V + Q V VA
Sbjct: 142 GVTALDGGVYTALAVKNGGV---------IAWGDNYFG-QTTVPAEAQS-----GVDDVA 186
Query: 593 CGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAI 652
G H+L L V AWG ++Y Q +P A V +I++G+++SLA+
Sbjct: 187 GGIFHSLALKDGKVIAWGDNRYKQ------------TTVPTEALSGVSAIASGEWYSLAL 234
Query: 653 TSQGKLYTWG 662
GK+ WG
Sbjct: 235 -KNGKVIAWG 243
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 13/81 (16%)
Query: 588 VSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQY 647
V ++A G H+L L V AWG ++ GQ +PA A V +I+AG +
Sbjct: 65 VDAIAAGNYHSLALKDGEVIAWGGNEDGQ------------TTVPAEARSGVDAIAAGAW 112
Query: 648 HSLAITSQGKLYTWGWGVHGQ 668
S A+ GK+ WG GQ
Sbjct: 113 ASYAL-KDGKVIAWGDDSDGQ 132
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 26/135 (19%)
Query: 130 IPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEV 189
+PA A V +I+ G +H LA+ GK+ WG ++GQL + A
Sbjct: 18 VPAEAQSGVDAIAGGYFHGLALKG-GKVLGWGANLNGQL------------TMPAATQSG 64
Query: 190 IISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIELYGLPEPISMIATGYF 249
+ + G+ HS+AL K G V A+G GQ VP E + IA G +
Sbjct: 65 VDAIAAGNYHSLAL-KDGEVIAWGGNEDGQT--------TVPAEAR---SGVDAIAAGAW 112
Query: 250 HNLALGTSNRLYTWG 264
+ AL ++ WG
Sbjct: 113 ASYAL-KDGKVIAWG 126
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 346 AHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQ 391
A+++ L + ++ + I G +HS+ L ++G V WG N DGQ
Sbjct: 49 ANLNGQLTMPAATQSGVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQ 93
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 631 IPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQL 669
+PA A V +I+ G +H LA+ GK+ WG ++GQL
Sbjct: 18 VPAEAQSGVDAIAGGYFHGLALKG-GKVLGWGANLNGQL 55
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 108/272 (39%), Gaps = 58/272 (21%)
Query: 38 GGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHT 97
GG++H ++ +V WG++ G L TM ++ V ++A G H+
Sbjct: 33 GGYFHGLALKGGKVLGWGANLNGQL----TMPAATQS-----------GVDAIAAGNYHS 77
Query: 98 LVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKL 157
L L V AWG ++ GQ +PA A V +I+AG + S A+ GK+
Sbjct: 78 LALKDGEVIAWGGNEDGQ------------TTVPAEARSGVDAIAAGAWASYAL-KDGKV 124
Query: 158 YTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSGIF 217
WG D S+ Q E + ++A G ++ K G V A+G F
Sbjct: 125 IAWG-------------DDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYF 171
Query: 218 GQLGTGSNTKHKVPIELYGLPEPISMIATGYFHNLALGTSNRLYTWGS-----SPQVLRS 272
GQ VP E + +A G FH+LAL ++ WG + +
Sbjct: 172 GQT--------TVPAE---AQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTEA 219
Query: 273 QSQAQKRARMMCYSNQVKNAALAEFSSEVTSP 304
S A YS +KN + + S T+P
Sbjct: 220 LSGVSAIASGEWYSLALKNGKVIAWGSSRTAP 251
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 13/81 (16%)
Query: 588 VSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQY 647
V ++A G H L L V WG++ GQL +PA V +I+AG Y
Sbjct: 28 VDAIAGGYFHGLALKGGKVLGWGANLNGQL------------TMPAATQSGVDAIAAGNY 75
Query: 648 HSLAITSQGKLYTWGWGVHGQ 668
HSLA+ G++ WG GQ
Sbjct: 76 HSLAL-KDGEVIAWGGNEDGQ 95
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 115/310 (37%), Gaps = 89/310 (28%)
Query: 356 SHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSS 415
+ ++ + I G H + L + G+V WG N++GQL P A
Sbjct: 22 AEAQSGVDAIAGGYFHGLAL-KGGKVLGWGANLNGQL--------TMPAATQ-------- 64
Query: 416 EVXXXXXXXXXXXXIKHITCGGDFSLAMDESGKVWAWGTNVQGQVPRYIGELLFYKFNFD 475
+ I G SLA+ + G+V AWG N GQ
Sbjct: 65 ------------SGVDAIAAGNYHSLALKD-GEVIAWGGNEDGQTT-------------- 97
Query: 476 PVGPLVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSLHIIPVLSIIQNSEPSQSNV 535
+P ++ ++AI ++ +W A D + S Q + P+++
Sbjct: 98 --------VP--AEARSGVDAI----AAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQS 143
Query: 536 AWSLND---ITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRIDVSSVA 592
+ D T L+++ V + W +N + V + Q V VA
Sbjct: 144 GVTALDGGVYTALAVKNGGV---------IAWGDNYFG-QTTVPAEAQS-----GVDDVA 188
Query: 593 CGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAI 652
G H+L L V AWG ++Y Q +P A V +I++G+++SLA+
Sbjct: 189 GGIFHSLALKDGKVIAWGDNRYKQ------------TTVPTEALSGVSAIASGEWYSLAL 236
Query: 653 TSQGKLYTWG 662
GK+ WG
Sbjct: 237 -KNGKVIAWG 245
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 13/81 (16%)
Query: 588 VSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQY 647
V ++A G H+L L V AWG ++ GQ +PA A V +I+AG +
Sbjct: 67 VDAIAAGNYHSLALKDGEVIAWGGNEDGQ------------TTVPAEARSGVDAIAAGAW 114
Query: 648 HSLAITSQGKLYTWGWGVHGQ 668
S A+ GK+ WG GQ
Sbjct: 115 ASYAL-KDGKVIAWGDDSDGQ 134
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 26/135 (19%)
Query: 130 IPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEV 189
+PA A V +I+ G +H LA+ GK+ WG ++GQL + A
Sbjct: 20 VPAEAQSGVDAIAGGYFHGLALKG-GKVLGWGANLNGQL------------TMPAATQSG 66
Query: 190 IISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIELYGLPEPISMIATGYF 249
+ + G+ HS+AL K G V A+G GQ VP E + IA G +
Sbjct: 67 VDAIAAGNYHSLAL-KDGEVIAWGGNEDGQT--------TVPAEAR---SGVDAIAAGAW 114
Query: 250 HNLALGTSNRLYTWG 264
+ AL ++ WG
Sbjct: 115 ASYAL-KDGKVIAWG 128
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 346 AHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQ 391
A+++ L + ++ + I G +HS+ L ++G V WG N DGQ
Sbjct: 51 ANLNGQLTMPAATQSGVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQ 95
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 631 IPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQL 669
+PA A V +I+ G +H LA+ GK+ WG ++GQL
Sbjct: 20 VPAEAQSGVDAIAGGYFHGLALKG-GKVLGWGANLNGQL 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,932,563
Number of Sequences: 62578
Number of extensions: 791870
Number of successful extensions: 1981
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1531
Number of HSP's gapped (non-prelim): 224
length of query: 694
length of database: 14,973,337
effective HSP length: 106
effective length of query: 588
effective length of database: 8,340,069
effective search space: 4903960572
effective search space used: 4903960572
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)