RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14091
(694 letters)
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1
domain-containing proteins [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 476
Score = 118 bits (297), Expect = 3e-28
Identities = 100/429 (23%), Positives = 161/429 (37%), Gaps = 87/429 (20%)
Query: 72 SEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPH-PRII 130
S P P + + +I H LV +S VY+WGS+ +LG+G + P++
Sbjct: 43 SIPIPWIIRKVAQIINKH-----THLLVKMAS-VYSWGSNGMNELGLGNDETKVDRPQLN 96
Query: 131 PALA--NIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDM------------ 176
P ++ I+ G HSL + G LY+WG G LG + +D+
Sbjct: 97 PFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDD 156
Query: 177 ----SEPQLV----KALEHEVIISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNT-- 226
S P V A H ++ G S+ LT GRV+++G+ G+LG GS
Sbjct: 157 YELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNS 216
Query: 227 -KHKVPIELYGLPEP-ISMIATGYFHNLALGTSNRLYTWGSSPQVLRSQSQAQKRARMMC 284
K + +P+ I +A G H +AL ++Y WGS+ +
Sbjct: 217 QKTSIQFTPLKVPKKAIVQLAAGADHLIALTNEGKVYGWGSNQK---------------- 260
Query: 285 YSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASEKN------ETAEYASFMQSFL 338
Q+ V D + A K+ E E ++ +
Sbjct: 261 --GQLGRPTSERLKLVVLVGDP-----FAIRNIKYVACGKDHSLALDEDGEIYAWGVNIF 313
Query: 339 SSADDGMAHMSPTLVDTSHVKAP-----ILQICCGCHHSMLLSREGRVYTWGRNVDGQLG 393
G L + K I I G HS++L ++G +Y +GR GQLG
Sbjct: 314 GQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLG 373
Query: 394 NGSRK--EVHTPTAISINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWA 451
+V TPT +S+ I ++ + CG ++A + G V++
Sbjct: 374 IQEEITIDVSTPTKLSVAI------------------KLEQVACGTHHNIARTDDGSVYS 415
Query: 452 WGTNVQGQV 460
WG G +
Sbjct: 416 WGWGEHGNL 424
Score = 116 bits (291), Expect = 2e-27
Identities = 78/304 (25%), Positives = 129/304 (42%), Gaps = 32/304 (10%)
Query: 37 SGGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNK------------ 84
GG + + L + +++WG + GALG + ++ F + +
Sbjct: 111 CGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGS 170
Query: 85 -----IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANI-- 136
+ V +ACG +++LT+ G VY+WG+ + G+LG G S I +
Sbjct: 171 SAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPK 230
Query: 137 -RVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEH-EVIISAK 194
+V ++AG H +A+T++GK+Y WG GQLG T E + LV I
Sbjct: 231 KAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVA 290
Query: 195 GGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIELYGLPEP-----ISMIATGYF 249
G HS+AL + G ++A+G IFGQLG GS+ + + I I+ G
Sbjct: 291 CGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGES 350
Query: 250 HNLALGTSNRLYTWGSSPQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNE 309
H+L L LY +G R Q Q+ + + ++A +V +N
Sbjct: 351 HSLILRKDGTLYAFGRG---DRGQLGIQEEITIDV--STPTKLSVAIKLEQVACGTHHNI 405
Query: 310 TKIH 313
+
Sbjct: 406 ARTD 409
Score = 114 bits (286), Expect = 8e-27
Identities = 94/397 (23%), Positives = 156/397 (39%), Gaps = 67/397 (16%)
Query: 44 ALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSS 103
LV+ V++WGS+ LG G +++ P+ + R +K + +ACG H+L L
Sbjct: 63 LLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHD 122
Query: 104 G-VYAWGSSQYGQLG----------------IGLIDQSPHPRIIP----ALANIRVVSIS 142
G +Y+WG + G LG + P +P A +++RVV ++
Sbjct: 123 GNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLA 182
Query: 143 AGQYHSLAITSQGKLYTWGWGVHGQLGL----NTVEDMSEPQLVKALEHEVIISAKGGHA 198
G S+ +T+ G++Y+WG G+LG N+ + + +K + ++ A G
Sbjct: 183 CGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAIVQLAAGAD- 241
Query: 199 HSIALTKAGRVWAFGSGIFGQLG--TGSNTKHKVPIELYGLPEPISMIATGYFHNLALGT 256
H IALT G+V+ +GS GQLG T K V + I +A G H+LAL
Sbjct: 242 HLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDE 301
Query: 257 SNRLYTWGSSPQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAP 316
+Y WG N TK +
Sbjct: 302 DGEIYAWG---------------------VNIFGQLGAGSDGEIGA-----LTTKPNYKQ 335
Query: 317 SPSSASEKNETAEYASFM-----QSFLSSADDGMAHMSPTLVDTSHVKAP--------IL 363
S + + +A + + + + + T V P +
Sbjct: 336 LLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIKLE 395
Query: 364 QICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEV 400
Q+ CG HH++ + +G VY+WG G LGNG ++
Sbjct: 396 QVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEAD 432
Score = 104 bits (262), Expect = 9e-24
Identities = 72/238 (30%), Positives = 106/238 (44%), Gaps = 23/238 (9%)
Query: 37 SGGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWF---RNNKIDVSSVACG 93
+G + +AL +V+ WGS+ G LG PT ++ V RN K VACG
Sbjct: 238 AGADHLIALTNEGKVYGWGSNQKGQLGR-PTSERLKLVVLVGDPFAIRNIK----YVACG 292
Query: 94 RLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSP----HPRIIPALANIRVVSISAGQYHS 148
+ H+L L G +YAWG + +GQLG G + P L+ + + SISAG+ HS
Sbjct: 293 KDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHS 352
Query: 149 LAITSQGKLYTWGWGVHGQLGLNT--VEDMSEPQLVKALEHEVIISAKGGHAHSIALTKA 206
L + G LY +G G GQLG+ D+S P + ++ G H+IA T
Sbjct: 353 LILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIKLEQVAC--GTHHNIARTDD 410
Query: 207 GRVWAFGSGIFGQLGTGSNT-----KHKVPIELYGLPEPISMIATGYFHNLALGTSNR 259
G V+++G G G LG G + L I + G ++ T +
Sbjct: 411 GSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGH-NIILAGYGNQFSVIEETMDT 467
Score = 100 bits (250), Expect = 3e-22
Identities = 87/346 (25%), Positives = 135/346 (39%), Gaps = 70/346 (20%)
Query: 343 DGMAHMSPTLVDT-SHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVH 401
D P L KA I++I CG +HS+ L +G +Y+WG N DG LG K++
Sbjct: 86 DETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDIC 145
Query: 402 TPTAISINIVMTSSEVSSDERSPLLSSSIKH-----ITCGGDFSLAMDESGKVWAWGTNV 456
I+ E + + P SS+ H + CG + S+ + G+V++WGT
Sbjct: 146 DQNNDIIDFDDYELESTPF-KVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFR 204
Query: 457 QGQVPRYIGELLFYKFNFDPVGPLVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSL 516
G + +S+K + + L V
Sbjct: 205 CG-----------------------ELGQGSYKNSQKTSIQF------TPLKV------- 228
Query: 517 HIIPVLSIIQNSEPSQSNVAWSLNDITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIV- 575
P +I+Q +A + + L+ +GK + L T +V
Sbjct: 229 ---PKKAIVQ--------LAAGADHLIALTNEGKVYGWGSNQKGQL--GRPTSERLKLVV 275
Query: 576 ---RSHHQMLIMRIDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSP----H 627
I + ACG+ H+L L G +YAWG + +GQLG G +
Sbjct: 276 LVGDPFAIRNIKYV-----ACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTK 330
Query: 628 PRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNT 673
P L+ + + SISAG+ HSL + G LY +G G GQLG+
Sbjct: 331 PNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQE 376
Score = 98.8 bits (246), Expect = 1e-21
Identities = 120/549 (21%), Positives = 181/549 (32%), Gaps = 147/549 (26%)
Query: 125 PHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSE-PQLVK 183
P P II +A I H+ + +Y+WG +LGL E + PQL
Sbjct: 45 PIPWIIRKVAQIINK-------HTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNP 97
Query: 184 ALEHE--VIISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIELYGLPEPI 241
+ II G HS+ L G ++++G G LG
Sbjct: 98 FGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALG-------------------- 137
Query: 242 SMIATGYFHNLALGTSNRLYTWGSSPQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEV 301
I Y S+P + S A+ R+ VK A E S +
Sbjct: 138 RDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRV------VKLACGWEISVIL 191
Query: 302 TSPDANNETKIHLAPSPSSASEKNETAEYASFM-----QSFLSSADDGMAHMSPTLVDTS 356
T+ + +F Q ++ +P V
Sbjct: 192 TA--------------------DGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-- 229
Query: 357 HVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSE 416
K I+Q+ G H + L+ EG+VY WG N GQLG + + + +
Sbjct: 230 --KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVG--------- 278
Query: 417 VSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQVPRYIGELLFYKFNFDP 476
P +IK++ CG D SLA+DE G+++AWG N+ GQ+ G D
Sbjct: 279 ------DPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLG--AGS--------DG 322
Query: 477 VGPLVKWIPWFDDSSKKINAITFQSSSASW--LLVASYDCSLHIIPVLSIIQNSEPSQSN 534
+ P + + +T S SA L+ D +L+
Sbjct: 323 EIGALTTKPNYKQLL---SGVTICSISAGESHSLILRKDGTLY----------------- 362
Query: 535 VAWSLNDITTLSIQ-GKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRIDVSSVAC 593
A+ D L IQ ++ T L + I + VAC
Sbjct: 363 -AFGRGDRGQLGIQEEITIDVSTPTK----------------------LSVAIKLEQVAC 399
Query: 594 GRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAI 652
G H + T G VY+WG ++G LG G P + IR +S G I
Sbjct: 400 GTHHNIARTDDGSVYSWGWGEHGNLGNG-----PKEADVLVPTLIRQPLLS-GHN----I 449
Query: 653 TSQGKLYTW 661
G +
Sbjct: 450 ILAGYGNQF 458
Score = 96.1 bits (239), Expect = 6e-21
Identities = 74/304 (24%), Positives = 117/304 (38%), Gaps = 48/304 (15%)
Query: 371 HSMLLSREGRVYTWGRNVDGQLG-NGSRKEVHTPTAISINIVMTSSEVSSDERSPLLSSS 429
H+ LL + VY+WG N +LG +V P D+ S
Sbjct: 60 HTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFG--------RIDKAS------ 105
Query: 430 IKHITCGGDFSLAMDESGKVWAWGTNVQGQVPRYIGELLFYKFNFDPVGPLVKWIPWFDD 489
I I CGG+ SL +D G +++WG N G + R I + + ++
Sbjct: 106 IIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDI------HKDICDQNNDIIDFDDYEL 159
Query: 490 SSKKINAITFQSSSASWLLVASYDCSLHIIPVLSIIQNSEPSQSNVAWSLNDITTLSIQG 549
S + SS+ S L V C I S+I ++ + G
Sbjct: 160 ESTPFK-VPGGSSAKSHLRVVKLACGWEI----SVILTADG-------------RVYSWG 201
Query: 550 KNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRIDVSSVACGRLHTLVLTSSG-VYA 608
C L K + + + + + +A G H + LT+ G VY
Sbjct: 202 TF-RCGELGQ-----GSYKNSQKTSI-QFTPLKVPKKAIVQLAAGADHLIALTNEGKVYG 254
Query: 609 WGSSQYGQLGIGLIDQSPHPRIIPALANIRVV-SISAGQYHSLAITSQGKLYTWGWGVHG 667
WGS+Q GQLG ++ ++ IR + ++ G+ HSLA+ G++Y WG + G
Sbjct: 255 WGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFG 314
Query: 668 QLGL 671
QLG
Sbjct: 315 QLGA 318
Score = 79.1 bits (195), Expect = 2e-15
Identities = 57/252 (22%), Positives = 94/252 (37%), Gaps = 47/252 (18%)
Query: 447 GKVWAWGTNVQGQVPRYIGELLFYKFNFDPVGPLVKWIPWFDDSSKKINAITFQSSSASW 506
V++WG+N ++ +G P + P+ K + I
Sbjct: 68 ASVYSWGSNGMNELG--LGNDETKVD--RP-----QLNPFGR--IDKASIIKIACGGNHS 116
Query: 507 LLVASYDCSLHIIPVLSIIQNSEPSQSNVAWSLNDITTLS-IQGKNVNCENLTPCCLCWW 565
L +D +L +W ND L K++ +N +
Sbjct: 117 L-GLDHDGNL------------------YSWGDNDDGALGRDIHKDICDQNNDIIDFDDY 157
Query: 566 EN-----TLCDKDIVRSHHQMLIMRIDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGI 619
E + +SH V +ACG +++LT+ G VY+WG+ + G+LG
Sbjct: 158 ELESTPFKVPGGSSAKSHL-------RVVKLACGWEISVILTADGRVYSWGTFRCGELGQ 210
Query: 620 GLIDQSPHPRIIPALANI---RVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVED 676
G S I + +V ++AG H +A+T++GK+Y WG GQLG T E
Sbjct: 211 GSYKNSQKTSIQFTPLKVPKKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSER 270
Query: 677 MSEPQLVKALEH 688
+ LV
Sbjct: 271 LKLVVLVGDPFA 282
Score = 69.5 bits (170), Expect = 2e-12
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 588 VSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQ 646
+ S++ G H+L+L G +YA+G GQLGI I++ ++ G
Sbjct: 342 ICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIKLEQVACGT 401
Query: 647 YHSLAITSQGKLYTWGWGVHGQLG-LNTVEDMSEPQLVK 684
+H++A T G +Y+WGWG HG LG D+ P L++
Sbjct: 402 HHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIR 440
Score = 31.0 bits (70), Expect = 2.5
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 626 PHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSE-PQLVK 684
P P II +A I H+ + +Y+WG +LGL E + PQL
Sbjct: 45 PIPWIIRKVAQIINK-------HTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNP 97
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1)
repeat.
Length = 50
Score = 61.4 bits (150), Expect = 3e-12
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 105 VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAI 151
VY WG ++YGQLG+G + P+++ L+ +RVV ++ G H++A+
Sbjct: 4 VYTWGRNEYGQLGLGDEEDVLVPQLVEGLSGVRVVQVACGASHTVAL 50
Score = 61.4 bits (150), Expect = 3e-12
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 606 VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAI 652
VY WG ++YGQLG+G + P+++ L+ +RVV ++ G H++A+
Sbjct: 4 VYTWGRNEYGQLGLGDEEDVLVPQLVEGLSGVRVVQVACGASHTVAL 50
Score = 59.8 bits (146), Expect = 9e-12
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 16/65 (24%)
Query: 378 EGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVSSDERSPLLSSSIKHITCGG 437
+GRVYTWGRN GQLG G ++V P + L + + CG
Sbjct: 1 DGRVYTWGRNEYGQLGLGDEEDVLVPQLVEG----------------LSGVRVVQVACGA 44
Query: 438 DFSLA 442
++A
Sbjct: 45 SHTVA 49
Score = 59.5 bits (145), Expect = 1e-11
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 155 GKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIAL 203
G++YTWG +GQLGL ED+ PQLV+ L ++ G +H++AL
Sbjct: 2 GRVYTWGRNEYGQLGLGDEEDVLVPQLVEGLSGVRVVQVACGASHTVAL 50
Score = 50.2 bits (121), Expect = 2e-08
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 50 RVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVL 100
RV+TWG + YG LG G P+ V + V VACG HT+ L
Sbjct: 3 RVYTWGRNEYGQLGLGDEEDV-LVPQLVEGLSGVR--VVQVACGASHTVAL 50
Score = 48.7 bits (117), Expect = 9e-08
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 207 GRVWAFGSGIFGQLGTGSNTKHKVPIELYGLP-EPISMIATGYFHNLAL 254
GRV+ +G +GQLG G VP + GL + +A G H +AL
Sbjct: 2 GRVYTWGRNEYGQLGLGDEEDVLVPQLVEGLSGVRVVQVACGASHTVAL 50
Score = 46.0 bits (110), Expect = 7e-07
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 656 GKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHE 689
G++YTWG +GQLGL ED+ PQLV+ L
Sbjct: 2 GRVYTWGRNEYGQLGLGDEEDVLVPQLVEGLSGV 35
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1)
repeat.
Length = 30
Score = 50.2 bits (121), Expect = 2e-08
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 138 VVSISAGQYHSLAITSQGKLYTWGWGVHGQ 167
VVSI+AG YH+LA+TS G +Y WG +GQ
Sbjct: 1 VVSIAAGDYHTLALTSDGTVYCWGDNSYGQ 30
Score = 50.2 bits (121), Expect = 2e-08
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 639 VVSISAGQYHSLAITSQGKLYTWGWGVHGQ 668
VVSI+AG YH+LA+TS G +Y WG +GQ
Sbjct: 1 VVSIAAGDYHTLALTSDGTVYCWGDNSYGQ 30
Score = 45.6 bits (109), Expect = 6e-07
Identities = 18/30 (60%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 87 VSSVACGRLHTLVLTSSG-VYAWGSSQYGQ 115
V S+A G HTL LTS G VY WG + YGQ
Sbjct: 1 VVSIAAGDYHTLALTSDGTVYCWGDNSYGQ 30
Score = 45.6 bits (109), Expect = 6e-07
Identities = 18/30 (60%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 588 VSSVACGRLHTLVLTSSG-VYAWGSSQYGQ 616
V S+A G HTL LTS G VY WG + YGQ
Sbjct: 1 VVSIAAGDYHTLALTSDGTVYCWGDNSYGQ 30
Score = 44.0 bits (105), Expect = 2e-06
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 430 IKHITCGGDFSLAMDESGKVWAWGTNVQGQ 459
+ I G +LA+ G V+ WG N GQ
Sbjct: 1 VVSIAAGDYHTLALTSDGTVYCWGDNSYGQ 30
Score = 41.7 bits (99), Expect = 2e-05
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 362 ILQICCGCHHSMLLSREGRVYTWGRNVDGQ 391
++ I G +H++ L+ +G VY WG N GQ
Sbjct: 1 VVSIAAGDYHTLALTSDGTVYCWGDNSYGQ 30
Score = 34.8 bits (81), Expect = 0.005
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 241 ISMIATGYFHNLALGTSNRLYTWGS 265
+ IA G +H LAL + +Y WG
Sbjct: 1 VVSIAAGDYHTLALTSDGTVYCWGD 25
Score = 34.8 bits (81), Expect = 0.005
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 190 IISAKGGHAHSIALTKAGRVWAFGSGIFGQ 219
++S G H++ALT G V+ +G +GQ
Sbjct: 1 VVSIAAGDYHTLALTSDGTVYCWGDNSYGQ 30
Score = 29.4 bits (67), Expect = 0.39
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 36 LSGGFYH-VALVRNRRVHTWGSSSYG 60
++ G YH +AL + V+ WG +SYG
Sbjct: 4 IAAGDYHTLALTSDGTVYCWGDNSYG 29
>gnl|CDD|238390 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include pyrophosphate-dependent
phosphofructokinases. These are found in bacteria as
well as plants. These may be dimeric nonallosteric
enzymes as in bacteria or allosteric heterotetramers as
in plants.
Length = 550
Score = 33.3 bits (76), Expect = 0.51
Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 10/112 (8%)
Query: 118 IGLIDQSPHPRIIPALANI-----RVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNT 172
L+ Q P L ++ + I G + A L G +GQ +
Sbjct: 3 YSLVQQERI-NYTPKLPSVLKGDFNNIKIVEGP-ATSAAGDPDALAKLFPGTYGQPSVAF 60
Query: 173 VEDMSEPQLVKALEHEVIIS---AKGGHAHSIALTKAGRVWAFGSGIFGQLG 221
V D P L+ +++S A GGH L + A GS ++G G
Sbjct: 61 VPDQDAPSSAPKLKIGIVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKG 112
>gnl|CDD|191352 pfam05716, AKAP_110, A-kinase anchor protein 110 kDa (AKAP 110).
This family consists of several mammalian protein kinase
A anchoring protein 3 (PRKA3) or A-kinase anchor protein
110 kDa (AKAP 110) sequences. Agents that increase
intracellular cAMP are potent stimulators of sperm
motility. Anchoring inhibitor peptides, designed to
disrupt the interaction of the cAMP-dependent protein
kinase A (PKA) with A kinase-anchoring proteins (AKAPs),
are potent inhibitors of sperm motility. PKA anchoring
is a key biochemical mechanism controlling motility.
AKAP110 shares compartments with both RI and RII
isoforms of PKA and may function as a regulator of both
motility- and head-associated functions such as
capacitation and the acrosome reaction.
Length = 685
Score = 30.8 bits (69), Expect = 3.3
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 17/113 (15%)
Query: 266 SPQVLRSQSQAQKRARMMCYSNQVKNAALAE--FSSEVTSPDANNETKIH---------- 313
SP ++ Q QA+K+ N ++N L+E F E + N E++I
Sbjct: 406 SPPIVGDQEQAEKKDLSSVVFNLIRNL-LSETIFKCEDSCEGKNKESEIKEDKSTSCERP 464
Query: 314 LAPSPSSASEKNETAEYASFMQSFLSSADDGMAHMSPTLVDTSHVKAPILQIC 366
L+ SP E +ET S + +++ DG HM+ +VD H+ ++++C
Sbjct: 465 LSDSPEEQCEDDETGGALSGLTKMVANQLDG--HMNGQMVD--HLMESVMKLC 513
>gnl|CDD|236049 PRK07562, PRK07562, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 1220
Score = 30.3 bits (69), Expect = 4.6
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 48 NRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDV----SSVAC 92
RR G S Y + S+I P+ V FR I+V S VA
Sbjct: 4 ERRFTKAGQSPYADIEFRKATSEIRNPDGSVVFRLENIEVPAQWSQVAA 52
>gnl|CDD|211677 TIGR01660, narH, nitrate reductase, beta subunit. The Nitrate
reductase enzyme complex allows bacteria to use nitrate
as an electron acceptor during anaerobic growth. The
enzyme complex consists of a tetramer that has an alpha,
beta and 2 gamma subunits. The alpha and beta subunits
have catalytic activity and the gamma subunits attach
the enzyme to the membrane and is a b-type cytochrome
that receives electrons from the quinone pool and
transfers them to the beta subunit. This model is
specific for the beta subunit for nitrate reductase I
(narH) and nitrate reductase II (narY) for gram positive
and gram negative bacteria.A few thermophiles and
archaea also match the model.The seed members used in
this model are all experimentally characterized and
include the following:SP:P11349, and SP:P19318, both
E.Coli (NarH and NarY respectively), SP:P42176 from B.
Subtilis, GP:11344602 from Psuedomonas
fluorescens,GP:541762 from Paracoccus denitrificans, and
GP:18413622 from Halomonas halodenitrificans. This model
also matches PFAM pfam00037 for 4Fe-4S binding domain
[Energy metabolism, Anaerobic].
Length = 492
Score = 29.5 bits (66), Expect = 7.4
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 363 LQICCGCH------HSMLLSREGRVYTWGRNVDGQLGNGSRKE 399
L C GCH ++ SREG Y W NV+ + G G K+
Sbjct: 13 LDKCIGCHTCSVTCKNVWTSREGVEYAWFNNVETKPGIGYPKD 55
>gnl|CDD|218520 pfam05241, EBP, Emopamil binding protein. Emopamil binding protein
(EBP) is as a gene that encodes a non-glycosylated type
I integral membrane protein of endoplasmic reticulum and
shows high level expression in epithelial tissues. The
EBP protein has emopamil binding domains, including the
sterol acceptor site and the catalytic centre, which
show Delta8-Delta7 sterol isomerase activity. Human
sterol isomerase, a homologue of mouse EBP, is suggested
not only to play a role in cholesterol biosynthesis, but
also to affect lipoprotein internalisation. In humans,
mutations of EBP are known to cause the genetic disorder
of X-linked dominant chondrodysplasia punctata (CDPX2).
This syndrome of humans is lethal in most males, and
affected females display asymmetric hyperkeratotic skin
and skeletal abnormalities.
Length = 193
Score = 28.4 bits (64), Expect = 8.5
Identities = 12/53 (22%), Positives = 16/53 (30%), Gaps = 14/53 (26%)
Query: 222 TGSNTKHKVPI-----ELYG-----LPEPISMIATGYFHNLALGTSNRLYTWG 264
+H + I +LYG E G+ H T LY W
Sbjct: 111 KDKPLRHFLQIVVSVGQLYGTVLYFATE----WLDGFVHGREFSTPEPLYFWF 159
>gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III
C-methyltransferase; Provisional.
Length = 390
Score = 28.9 bits (65), Expect = 8.9
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 286 SNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASE--KNETAEYASFMQSFLS 339
SNQV N LA+ S+ + D+++E SS SE +N + + +FM +F++
Sbjct: 210 SNQVDNLRLADNDSDGSPMDSDSEE------LSSSLSEWRQNLSKSWHNFMDNFIT 259
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.131 0.405
Gapped
Lambda K H
0.267 0.0841 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 33,953,789
Number of extensions: 3190168
Number of successful extensions: 2333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2285
Number of HSP's successfully gapped: 40
Length of query: 694
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 590
Effective length of database: 6,324,786
Effective search space: 3731623740
Effective search space used: 3731623740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)